Query psy17706
Match_columns 154
No_of_seqs 155 out of 1089
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 20:55:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02911 Formyl_trans_C: Formy 99.9 2.9E-24 6.2E-29 152.4 5.6 82 8-94 19-100 (100)
2 COG0223 Fmt Methionyl-tRNA for 99.8 4.1E-21 8.8E-26 165.9 8.4 83 7-95 221-303 (307)
3 TIGR00460 fmt methionyl-tRNA f 99.8 1.2E-19 2.5E-24 154.7 9.8 86 8-98 221-307 (313)
4 PRK00005 fmt methionyl-tRNA fo 99.8 1.2E-18 2.7E-23 147.8 9.4 82 8-95 221-302 (309)
5 PLN02285 methionyl-tRNA formyl 99.7 8.5E-18 1.8E-22 145.3 9.3 85 8-96 238-332 (334)
6 PRK06988 putative formyltransf 99.7 2E-17 4.4E-22 141.3 9.3 85 8-95 220-308 (312)
7 PRK08125 bifunctional UDP-gluc 99.7 2.2E-17 4.9E-22 151.2 8.9 81 8-96 218-299 (660)
8 KOG3082|consensus 97.8 1.7E-05 3.8E-10 69.9 3.0 57 47-103 272-328 (338)
9 KOG2452|consensus 96.8 0.0016 3.5E-08 61.3 4.4 87 7-97 220-313 (881)
10 KOG1036|consensus 48.9 42 0.0009 30.2 5.3 58 12-73 98-159 (323)
11 KOG0647|consensus 41.9 47 0.001 30.1 4.6 49 25-77 135-184 (347)
12 KOG1240|consensus 35.4 1.3E+02 0.0028 32.0 7.0 76 2-78 1045-1129(1431)
13 KOG0315|consensus 32.3 1.1E+02 0.0023 27.4 5.2 51 25-76 103-153 (311)
14 KOG0301|consensus 29.2 69 0.0015 31.8 3.8 86 25-119 239-334 (745)
15 COG2845 Uncharacterized protei 28.6 42 0.00091 30.5 2.2 85 23-130 259-345 (354)
16 PF00718 Polyoma_coat: Polyoma 26.7 27 0.00059 31.0 0.7 33 99-131 193-240 (297)
17 KOG2845|consensus 26.6 31 0.00067 32.7 1.0 47 76-133 152-198 (505)
18 PF04712 Radial_spoke: Radial 26.3 39 0.00084 31.5 1.6 13 16-28 424-436 (491)
19 COG1508 RpoN DNA-directed RNA 25.5 38 0.00082 31.6 1.4 17 8-24 216-232 (444)
20 KOG2114|consensus 24.2 1.5E+02 0.0031 30.3 5.1 96 50-151 176-296 (933)
21 KOG1446|consensus 23.9 2.3E+02 0.005 25.5 5.9 76 5-83 97-176 (311)
22 KOG1290|consensus 23.2 35 0.00075 32.9 0.7 22 2-23 491-512 (590)
23 PHA02614 Major capsid protein 22.4 58 0.0012 29.7 1.9 33 99-131 211-258 (363)
24 PF15500 Toxin_39: Putative RN 21.7 47 0.001 25.0 1.0 20 108-127 12-31 (96)
25 PF02208 Sorb: Sorbin homologo 21.4 55 0.0012 21.8 1.1 19 119-138 7-25 (47)
No 1
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=99.90 E-value=2.9e-24 Score=152.43 Aligned_cols=82 Identities=28% Similarity=0.360 Sum_probs=69.5
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV 87 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~ 87 (154)
+++||||+||||||+.++|+++||+++++.+.. .....||+|++.. +++|.|+|+|| +|.|.+||++|||+|+|.
T Consensus 19 ~~~vRal~p~pga~~~~~~~~i~i~~~~~~~~~---~~~~~pG~i~~~~-~~~l~V~~~dg-~l~i~~~q~~gkk~~~a~ 93 (100)
T PF02911_consen 19 YNLVRALNPYPGAFTTFNGKRIKILKAEPLEDD---SSSNPPGTIVYID-KNGLLVACGDG-ALRIRELQPEGKKPMSAK 93 (100)
T ss_dssp HHHHHHTTTTT-EEEEETTEEEEEEEEEEEETT---SSSSSTTBEEEEE-TTEEEEETSBS-EEEEEEEEETTS-EEEHH
T ss_pred HHHHhCCCCCCCEEEeeCCeEEEEEeeeecccc---cccccCceEEEEc-CCEEEEEECCc-EEEEEEEEcCCCCEEeHH
Confidence 689999999999999999999999999988543 1222399998665 46999999999 999999999999999999
Q ss_pred HHHcccC
Q psy17706 88 DFKNGYL 94 (154)
Q Consensus 88 DFLNG~~ 94 (154)
||+||++
T Consensus 94 ~f~~g~r 100 (100)
T PF02911_consen 94 DFLNGYR 100 (100)
T ss_dssp HHHHHH-
T ss_pred HHHccCC
Confidence 9999975
No 2
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.1e-21 Score=165.88 Aligned_cols=83 Identities=31% Similarity=0.325 Sum_probs=74.4
Q ss_pred ccceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706 7 SLQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA 86 (154)
Q Consensus 7 ~~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA 86 (154)
-+|+||||+||||||+.++||++|||.+++.++. ....||+|+... ++++.|+|++| .|.|.++|++|||+|++
T Consensus 221 i~n~IRa~~P~Pga~~~~~~~~iki~~a~~~~~~----~~~~pG~i~~~~-~~~l~Va~~~g-~l~l~~lQ~~gkk~~~~ 294 (307)
T COG0223 221 ILNKIRAFNPWPGAWTELGGKRIKIWEARVLEGA----SNGKPGEILAAD-KKGLLVACGDG-ALRLTELQPAGKKAMSA 294 (307)
T ss_pred HHHHHhccCCCCceEEEECCeEEEEEEEEEcccc----ccCCCcceEEec-CCcEEEEeCCc-eEEEEeeccCCCCCCCH
Confidence 3789999999999999999999999999998643 226899998554 57999999999 99999999999999999
Q ss_pred HHHHcccCC
Q psy17706 87 VDFKNGYLG 95 (154)
Q Consensus 87 ~DFLNG~~~ 95 (154)
.||+||...
T Consensus 295 ~~~l~g~~~ 303 (307)
T COG0223 295 ADFLNGRRL 303 (307)
T ss_pred HHHhccccc
Confidence 999999874
No 3
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=99.81 E-value=1.2e-19 Score=154.72 Aligned_cols=86 Identities=26% Similarity=0.297 Sum_probs=74.1
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeC-CCcEEEEceeecCCCCcCCH
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCV-DGKSILCSQITVAGKKKMTA 86 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~Vacg-DG~~L~I~eVQ~eGKK~MsA 86 (154)
+++||||+||||||+.++|+++|||++++.+.. .....||+|+... +++++|+|+ || +|.|.+||++|||+|++
T Consensus 221 ~~~iRA~~p~pga~~~~~g~~i~i~~a~~~~~~---~~~~~pG~v~~~~-~~~~~V~~~~dg-~l~i~~lq~~Gkk~~~a 295 (313)
T TIGR00460 221 LNKIRALNPWPTAWLTFEGKNIKIHKAKVIDLS---TYKAKPGEIVYHN-KKGILVACGKDG-ILLLLSLQPPGKKVMRA 295 (313)
T ss_pred HHHHhccCCCCceEEEECCEEEEEEEEEEccCC---CCCCCCCEEEEeC-CCeEEEEEcCCC-EEEEEEEeCCCCCcCcH
Confidence 689999999999999999999999999876422 1123799998654 458999999 88 99999999999999999
Q ss_pred HHHHcccCCCCc
Q psy17706 87 VDFKNGYLGKVK 98 (154)
Q Consensus 87 ~DFLNG~~~~~~ 98 (154)
.||+||+++.+.
T Consensus 296 ~~f~~g~~~~~~ 307 (313)
T TIGR00460 296 EDFYNGSRHPWY 307 (313)
T ss_pred HHHHcCCCCccc
Confidence 999999987655
No 4
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=99.77 E-value=1.2e-18 Score=147.83 Aligned_cols=82 Identities=27% Similarity=0.258 Sum_probs=71.7
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV 87 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~ 87 (154)
+++|||++||||||+.++|+++|||++++.+.. ....||+|+... ++++.|+|+|| .|.|.+||++|||+|++.
T Consensus 221 ~~~iRA~~p~pga~~~~~g~~v~i~~a~~~~~~----~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~l~~~g~k~~~~~ 294 (309)
T PRK00005 221 ENHIRGFNPWPGAWTELDGQRLKILEAELVEAS----GSGAPGTILAID-KDGIVVATGEG-ALRLTQLQPPGKKPMSAA 294 (309)
T ss_pred HHHHhcCCCCCceEEEECCEEEEEEEEEEccCC----CCCCCCEEEEec-CCeEEEEECCe-eEEEEEEECCCCCcccHH
Confidence 589999999999999999999999999876421 234699998544 46899999999 999999999999999999
Q ss_pred HHHcccCC
Q psy17706 88 DFKNGYLG 95 (154)
Q Consensus 88 DFLNG~~~ 95 (154)
+|+||++.
T Consensus 295 ~f~~g~~~ 302 (309)
T PRK00005 295 DFLNGRRL 302 (309)
T ss_pred HHhcCCCC
Confidence 99999754
No 5
>PLN02285 methionyl-tRNA formyltransferase
Probab=99.73 E-value=8.5e-18 Score=145.26 Aligned_cols=85 Identities=28% Similarity=0.307 Sum_probs=68.4
Q ss_pred cceeeccCCCCceeeeeC------Cc----eeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceee
Q psy17706 8 LQHFRDTSSKPPSETKEP------PE----RSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQIT 77 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~------Gk----rlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ 77 (154)
+++|||++||||||+.++ |+ ++|||++++.+.. ......||++.+ . ++++.|+|+||.+|.|.+||
T Consensus 238 ~~~iRa~~p~Pga~~~~~~~~~~~~~~~~~~iki~~~~~~~~~--~~~~~~~g~~~~-~-~~~l~V~c~dg~~l~i~~lq 313 (334)
T PLN02285 238 HNKVRAFAGWPGTRAKFQLVDDGDGEREVLELKIITTRVCEAG--GEQTGSADAVTF-K-KDSLLVPCGGGTWLEVLEVQ 313 (334)
T ss_pred HHHHhcCCCCCcEEEEEccccccCCcccceeEEEEEEEEeccc--cccCCCCcEEEE-e-CCeEEEEeCCCCEEEEEEEE
Confidence 689999999999999995 53 9999999876421 001235787643 3 46899999999459999999
Q ss_pred cCCCCcCCHHHHHcccCCC
Q psy17706 78 VAGKKKMTAVDFKNGYLGK 96 (154)
Q Consensus 78 ~eGKK~MsA~DFLNG~~~~ 96 (154)
++|||+|++.||+||++.+
T Consensus 314 ~~Gkk~m~~~~f~~G~~~~ 332 (334)
T PLN02285 314 PPGKKVMKAKDFWNGLRGQ 332 (334)
T ss_pred CCCCCCCcHHHHhcCCCCC
Confidence 9999999999999998764
No 6
>PRK06988 putative formyltransferase; Provisional
Probab=99.72 E-value=2e-17 Score=141.29 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=69.9
Q ss_pred cceeeccC-CCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCc---EEEEceeecCCCCc
Q psy17706 8 LQHFRDTS-SKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGK---SILCSQITVAGKKK 83 (154)
Q Consensus 8 ~~~IRgl~-PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~---~L~I~eVQ~eGKK~ 83 (154)
+++||||+ ||||||+.++|+++|||++++............||+|+ . ++++.|+|+||. .+.|.++|++|||+
T Consensus 220 ~~~iRA~~~p~pga~~~~~g~~v~i~~a~~~~~~~~~~~~~~pG~i~-~--~~~l~V~c~dg~~v~~l~i~~~q~~gkk~ 296 (312)
T PRK06988 220 YNLIRAVAPPYPGAFTDLGGTRFVVARARLAAPGAAAARDLPPGLHV-S--DNALFGVCGDGRAVSILELRRQQDGGETV 296 (312)
T ss_pred HHHhccCCCCCCeeEEEECCEEEEEEEEEEccCCcccccCCCCCEEE-E--CCCEEEECCCCCCcceEEEEEEEcCCCCc
Confidence 68999996 99999999999999999998764220001124699986 3 468999999994 58999999999999
Q ss_pred CCHHHHHcccCC
Q psy17706 84 MTAVDFKNGYLG 95 (154)
Q Consensus 84 MsA~DFLNG~~~ 95 (154)
|+++||+||+..
T Consensus 297 ~~~~~f~~~~~~ 308 (312)
T PRK06988 297 VTPAQFAQFIHS 308 (312)
T ss_pred CCHHHHhhhccc
Confidence 999999999765
No 7
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.71 E-value=2.2e-17 Score=151.25 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=70.5
Q ss_pred cceeeccC-CCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706 8 LQHFRDTS-SKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA 86 (154)
Q Consensus 8 ~~~IRgl~-PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA 86 (154)
+++||||+ ||||||+.++|+++|||++++.+.. ....||+|+.. + .+.|+|+|| +|.|.+||++|||+|++
T Consensus 218 ~~~iRa~~~p~pga~~~~~g~~~~i~~a~~~~~~----~~~~pG~i~~~-~--~~~v~~~dg-~l~i~~~q~~g~~~~~~ 289 (660)
T PRK08125 218 HNLVRAVTDPWPGAFSYVGEQKFTVWSSRVLPDA----SGAQPGTVLSV-A--PLRIACGEG-ALEIVTGQAGDGLYMQG 289 (660)
T ss_pred HHHHhhcCCCCCceEEEECCEEEEEEEEEEccCC----CCCCCCEEEEe-C--CEEEEeCCc-EEEEEEEECCCCCccCH
Confidence 68999998 9999999999999999999886422 23479999843 2 499999999 99999999999999999
Q ss_pred HHHHcccCCC
Q psy17706 87 VDFKNGYLGK 96 (154)
Q Consensus 87 ~DFLNG~~~~ 96 (154)
++|+||+...
T Consensus 290 ~~~~~g~~~~ 299 (660)
T PRK08125 290 SQLAQELGLV 299 (660)
T ss_pred HHHhcCCCCC
Confidence 9999998753
No 8
>KOG3082|consensus
Probab=97.76 E-value=1.7e-05 Score=69.86 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=50.4
Q ss_pred CCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHHHHHcccCCCCcccccc
Q psy17706 47 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDK 103 (154)
Q Consensus 47 ~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~DFLNG~~~~~~~~~~~ 103 (154)
..+|++.|+.++..+.+.|++|+++.+.+++++|||.|.+.+|.||+...|.+..+.
T Consensus 272 s~~~~~~~h~kk~~l~~~ckngs~l~vl~~~l~~kk~i~a~~f~ng~~~~w~Q~~~~ 328 (338)
T KOG3082|consen 272 STSGEDWYHMKKGSLILLCKNGSLLGVLDVVLVGKKGIRASAFNNGLLVEWGQKFSS 328 (338)
T ss_pred cCcccceeeeccceEEEEecCCCceeeEEEEeccccceeeecccccccchhhhhhcc
Confidence 458999999988889999999889999999999999999999999999966655443
No 9
>KOG2452|consensus
Probab=96.77 E-value=0.0016 Score=61.31 Aligned_cols=87 Identities=22% Similarity=0.215 Sum_probs=67.7
Q ss_pred ccceeeccCCCCceeeeeCCceeeeeeeEecCc------C-CCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecC
Q psy17706 7 SLQHFRDTSSKPPSETKEPPERSKEPTDRLTEE------T-NPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVA 79 (154)
Q Consensus 7 ~~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~------~-~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~e 79 (154)
-|+.|||-.--||||+.++|+++-++...+... + .++.....||.+ . +.+|+.--.||+|+.+..||++
T Consensus 220 ~hn~irgndkvpgaw~~~~~~k~sff~s~l~~~g~~~~~da~~i~~~~~pg~v--~--~~gl~l~g~d~~~~~v~~i~~~ 295 (881)
T KOG2452|consen 220 IHNWIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVV--T--KAGLILFGNDDKMLLVKNIQLE 295 (881)
T ss_pred HHHHhhcCCCCCcHHHHhhcceeeeeccccCCCCCCCCCCcccccccCCCcee--e--ccceEEEcCCCcEEEEEeEEec
Confidence 478999999999999999999998777655321 1 234445568943 2 3567777778889999999999
Q ss_pred CCCcCCHHHHHcccCCCC
Q psy17706 80 GKKKMTAVDFKNGYLGKV 97 (154)
Q Consensus 80 GKK~MsA~DFLNG~~~~~ 97 (154)
..|.+.|..|..|...+.
T Consensus 296 d~k~i~as~~~~ga~~~~ 313 (881)
T KOG2452|consen 296 DGKMILASNFFKGAASSV 313 (881)
T ss_pred CCcEEehhhhccccceeE
Confidence 999999999999986544
No 10
>KOG1036|consensus
Probab=48.92 E-value=42 Score=30.21 Aligned_cols=58 Identities=16% Similarity=-0.111 Sum_probs=31.6
Q ss_pred eccCCCCceeeeeC---CceeeeeeeEecCcCCCCCCCCCCcEEEE-eeCCCeEEEEeCCCcEEEE
Q psy17706 12 RDTSSKPPSETKEP---PERSKEPTDRLTEETNPITPELTPGFVSF-DRGSKLLRVRCVDGKSILC 73 (154)
Q Consensus 12 Rgl~PwPga~t~l~---GkrlKI~~~~l~~~~~~~~~~~~PGtIv~-~~~~~gL~VacgDG~~L~I 73 (154)
|.+.--|..-..+- ++++|+|+++-.... ..-..++.|.. +..++.|+|+|.|- .+.+
T Consensus 98 ~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~---~~~d~~kkVy~~~v~g~~LvVg~~~r-~v~i 159 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV---GTFDQGKKVYCMDVSGNRLVVGTSDR-KVLI 159 (323)
T ss_pred EEEEeeccCCeEEEcccCccEEEEeccccccc---cccccCceEEEEeccCCEEEEeecCc-eEEE
Confidence 44433344444443 389999999832111 11123344432 33467899999887 4444
No 11
>KOG0647|consensus
Probab=41.86 E-value=47 Score=30.07 Aligned_cols=49 Identities=16% Similarity=0.031 Sum_probs=34.2
Q ss_pred CCceeeeeeeEecCcCCCCCCCCCCcEEEE-eeCCCeEEEEeCCCcEEEEceee
Q psy17706 25 PPERSKEPTDRLTEETNPITPELTPGFVSF-DRGSKLLRVRCVDGKSILCSQIT 77 (154)
Q Consensus 25 ~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~-~~~~~gL~VacgDG~~L~I~eVQ 77 (154)
=+|.||.||++-. + |+..-..|+.+.. +....-++|+|++. -|.+-.|+
T Consensus 135 WDKTlKfWD~R~~--~-pv~t~~LPeRvYa~Dv~~pm~vVata~r-~i~vynL~ 184 (347)
T KOG0647|consen 135 WDKTLKFWDTRSS--N-PVATLQLPERVYAADVLYPMAVVATAER-HIAVYNLE 184 (347)
T ss_pred cccceeecccCCC--C-eeeeeeccceeeehhccCceeEEEecCC-cEEEEEcC
Confidence 4689999999833 2 5555567888743 33345688999987 67777774
No 12
>KOG1240|consensus
Probab=35.42 E-value=1.3e+02 Score=32.00 Aligned_cols=76 Identities=16% Similarity=0.007 Sum_probs=48.8
Q ss_pred CcccCccceeeccCCCCceeee-eCCceeeeeeeEecCcCCC------CCC-CCCCcEEEE-eeCCCeEEEEeCCCcEEE
Q psy17706 2 FEHKGSLQHFRDTSSKPPSETK-EPPERSKEPTDRLTEETNP------ITP-ELTPGFVSF-DRGSKLLRVRCVDGKSIL 72 (154)
Q Consensus 2 ~~~~~~~~~IRgl~PwPga~t~-l~GkrlKI~~~~l~~~~~~------~~~-~~~PGtIv~-~~~~~gL~VacgDG~~L~ 72 (154)
.||.+...+++..+|--.-|.. -++..+|||+.+-..++.. .+. ....++.+. ....+.+.|++.|| .+.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG-~v~ 1123 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG-SVR 1123 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC-eEE
Confidence 5888888888777665333332 3668999999965544311 111 233455443 33457899999999 788
Q ss_pred Eceeec
Q psy17706 73 CSQITV 78 (154)
Q Consensus 73 I~eVQ~ 78 (154)
+..|--
T Consensus 1124 ~~~id~ 1129 (1431)
T KOG1240|consen 1124 VLRIDH 1129 (1431)
T ss_pred EEEccc
Confidence 887765
No 13
>KOG0315|consensus
Probab=32.32 E-value=1.1e+02 Score=27.40 Aligned_cols=51 Identities=12% Similarity=-0.085 Sum_probs=27.7
Q ss_pred CCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEcee
Q psy17706 25 PPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQI 76 (154)
Q Consensus 25 ~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eV 76 (154)
++..+|||+++...-..-...+.+.-+|+.+.....|+++..+| -|.|=.|
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg-~irvWDl 153 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSG-NIRVWDL 153 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCC-cEEEEEc
Confidence 45689999998653221111233445666444444566665566 5655433
No 14
>KOG0301|consensus
Probab=29.23 E-value=69 Score=31.77 Aligned_cols=86 Identities=8% Similarity=-0.014 Sum_probs=50.5
Q ss_pred CCceeeeeeeEecCcCCCCCCCCCCcE-EEE--eeCCCeEEEEeCCCcEEEEceeecCCCCcCCHHHHHcccC---CCCc
Q psy17706 25 PPERSKEPTDRLTEETNPITPELTPGF-VSF--DRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL---GKVK 98 (154)
Q Consensus 25 ~GkrlKI~~~~l~~~~~~~~~~~~PGt-Iv~--~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~DFLNG~~---~~~~ 98 (154)
.+-.++||+.....+. -..|++ |.. ....+.|+|+|.|| .|+|-.+-. .+..-.+-++-|- .-.+
T Consensus 239 EDrtlriW~~~e~~q~-----I~lPttsiWsa~~L~NgDIvvg~SDG-~VrVfT~~k---~R~As~evl~afd~~v~s~~ 309 (745)
T KOG0301|consen 239 EDRTLRIWKKDECVQV-----ITLPTTSIWSAKVLLNGDIVVGGSDG-RVRVFTVDK---DRKASDEVLKAFDAEVVSQI 309 (745)
T ss_pred CCceEEEeecCceEEE-----EecCccceEEEEEeeCCCEEEeccCc-eEEEEEecc---cccCCHHHHHHHHHHHHhhh
Confidence 4567899998532211 134773 332 22245699999999 787776654 2332233333222 2345
Q ss_pred ccccccccccc----ccceecccCC
Q psy17706 99 NESDKRYKGMS----TCPHSLTTPS 119 (154)
Q Consensus 99 ~~~~~~~~~~~----~~~~~~~~~~ 119 (154)
..+++|..++- -|+-.|+.|.
T Consensus 310 ~~kt~~~g~v~~~~lPg~e~L~spG 334 (745)
T KOG0301|consen 310 SSKTEEVGGVKKDDLPGLEILKSPG 334 (745)
T ss_pred hhhhhhhCccccccCCchhhhcCCC
Confidence 56788888776 7788887654
No 15
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.60 E-value=42 Score=30.52 Aligned_cols=85 Identities=26% Similarity=0.152 Sum_probs=52.9
Q ss_pred eeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH--HHHHcccCCCCccc
Q psy17706 23 KEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA--VDFKNGYLGKVKNE 100 (154)
Q Consensus 23 ~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA--~DFLNG~~~~~~~~ 100 (154)
+++||.+-||+.-+.+.. .+ -.=++. +.+.+-+.+..+|| |. +-.+||+.|.. ..++.-.+.
T Consensus 259 ~~~gk~i~i~d~~v~e~G----~~-f~~~~~-D~NGq~vrlR~~DG--Ih---~T~~Gkrkla~~~~k~I~~~l~----- 322 (354)
T COG2845 259 KLGGKFIDIWDGFVDEGG----KD-FVTTGV-DINGQPVRLRAKDG--IH---FTKEGKRKLAFYLEKPIRAELE----- 322 (354)
T ss_pred HhCCeEEEecccccccCC----ce-eEEecc-ccCCceEEEeccCC--ce---echhhHHHHHHHHHHHHHhhhc-----
Confidence 468999999998766422 10 011222 44456788999999 44 45799998865 234433332
Q ss_pred cccccccccccceecccCCCccccCCCCce
Q psy17706 101 SDKRYKGMSTCPHSLTTPSGIGPCSHDGMT 130 (154)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (154)
+.|=.=+.|-|.||+-|. -|||+
T Consensus 323 -~a~~~~~rt~p~sl~dp~------~dg~~ 345 (354)
T COG2845 323 -TARPGIDRTQPISLEDPA------LDGGT 345 (354)
T ss_pred -ccCccccccCcccccCcc------cCchh
Confidence 222225789999999885 46665
No 16
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=26.73 E-value=27 Score=30.98 Aligned_cols=33 Identities=39% Similarity=0.720 Sum_probs=20.5
Q ss_pred cccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 99 NESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 99 ~~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
+++--||||-+||= + ..||+ .|+|| |-+||.-|
T Consensus 193 kNENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~ly~ 240 (297)
T PF00718_consen 193 KNENTRYFGSYTGGANTPPVLQFTNTVTTVLLDENGVGPLCKGDGLYL 240 (297)
T ss_dssp SSTTEEEEEEEE-SSS---EEEEESSEEEE---TTS--EEECTSEEEE
T ss_pred cCcCceeeEeecCCCCCCCeEEeccceeEEEEccCCccccccCCcEEE
Confidence 34556999998873 2 23443 69999 99998754
No 17
>KOG2845|consensus
Probab=26.61 E-value=31 Score=32.72 Aligned_cols=47 Identities=26% Similarity=0.527 Sum_probs=31.2
Q ss_pred eecCCCCcCCHHHHHcccCCCCccccccccccccccceecccCCCccccCCCCceeee
Q psy17706 76 ITVAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHSLTTPSGIGPCSHDGMTLCQ 133 (154)
Q Consensus 76 VQ~eGKK~MsA~DFLNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
|-..|+|+... +|..++.+. -..-|=-..---.|+|||.|+|--+|-
T Consensus 152 i~~~grk~C~C----Qg~kHpLi~-------NCL~CGkIVCeQEGsGPC~fCg~~V~t 198 (505)
T KOG2845|consen 152 ILLKGRKPCNC----QGRKHPLIN-------NCLGCGKIVCEQEGSGPCGFCGTPVCT 198 (505)
T ss_pred hhhcCCccccc----cCCcCchhh-------cccccceeEEEecCcccccccCCeeec
Confidence 33556777665 444444442 445555566667899999999999984
No 18
>PF04712 Radial_spoke: Radial spokehead-like protein
Probab=26.32 E-value=39 Score=31.50 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=10.9
Q ss_pred CCCceeeeeCCce
Q psy17706 16 SKPPSETKEPPER 28 (154)
Q Consensus 16 PwPga~t~l~Gkr 28 (154)
=|||||++..|++
T Consensus 424 ~WPGA~~~~~~k~ 436 (491)
T PF04712_consen 424 LWPGAVTFANGKK 436 (491)
T ss_pred CcCCEEEEEeCCe
Confidence 4999999997665
No 19
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=25.53 E-value=38 Score=31.58 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.2
Q ss_pred cceeeccCCCCceeeee
Q psy17706 8 LQHFRDTSSKPPSETKE 24 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l 24 (154)
+.+||++.||||+-+.-
T Consensus 216 l~~I~~l~PrPg~~f~~ 232 (444)
T COG1508 216 LLLIRSLDPRPGLEFSS 232 (444)
T ss_pred HHHHHccCCCCcccccc
Confidence 46799999999988763
No 20
>KOG2114|consensus
Probab=24.25 E-value=1.5e+02 Score=30.35 Aligned_cols=96 Identities=26% Similarity=0.419 Sum_probs=57.2
Q ss_pred cEEEEeeCCCeEEEEeCCCcEEEEceee--cCCCCcCCHHHHHcccCCCCcccccccccccccccee--cccCCCccccC
Q psy17706 50 GFVSFDRGSKLLRVRCVDGKSILCSQIT--VAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHS--LTTPSGIGPCS 125 (154)
Q Consensus 50 GtIv~~~~~~gL~VacgDG~~L~I~eVQ--~eGKK~MsA~DFLNG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 125 (154)
|-.+....+-.+.|+|-.. +.+=.++ .|-.+..+. ||--..|.....--|.=+-+++.. +-+++|-|||-
T Consensus 176 gL~~~~d~~s~lFv~Tt~~--V~~y~l~gr~p~~~~ld~----~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQ--VMLYSLSGRTPSLKVLDN----NGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCF 249 (933)
T ss_pred eeEEecCCceeEEEEecce--eEEEEecCCCcceeeecc----CCccceeeecCCCCccEEEecCceEEEEcCCCcceee
Confidence 5444333222256776654 3333333 222333444 777777765555555455566644 45789999994
Q ss_pred C------------C-Cceeeeeccc--------ccccccccceeecC
Q psy17706 126 H------------D-GMTLCQTTDR--------FHSTNQIRNVYELD 151 (154)
Q Consensus 126 ~------------~-~~~~~~~~~~--------~~~~~~~~~~~~~~ 151 (154)
- + |.-||-|+|+ +-|.|+|+++|.+.
T Consensus 250 af~~g~kk~~~~~~~g~~L~v~~~~~~~~~s~s~ss~~~i~~~~d~~ 296 (933)
T KOG2114|consen 250 AFEVGEKKEMLVFSFGLLLCVTTDKGTENTSLSNSSSNRIFKAYDLR 296 (933)
T ss_pred eecCCCeEEEEEEecCEEEEEEccCCCCCcccCccchhheeehhhhc
Confidence 2 2 7788987764 55569999999764
No 21
>KOG1446|consensus
Probab=23.85 E-value=2.3e+02 Score=25.46 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=45.3
Q ss_pred cCccceeeccCCCCceeeee---CCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCc-EEEEceeecCC
Q psy17706 5 KGSLQHFRDTSSKPPSETKE---PPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGK-SILCSQITVAG 80 (154)
Q Consensus 5 ~~~~~~IRgl~PwPga~t~l---~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~-~L~I~eVQ~eG 80 (154)
+|-...|-.|+--|+--+.+ .++-+++||.+...-..-.. ...+.-+.++ .+||+.|.+.++ .|.|-.+..-+
T Consensus 97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~~~~pi~AfD--p~GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-LSGRPIAAFD--PEGLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-cCCCcceeEC--CCCcEEEEecCCCeEEEEEecccC
Confidence 45667788888888887777 56899999998442110000 1112223333 356666555442 67777777766
Q ss_pred CCc
Q psy17706 81 KKK 83 (154)
Q Consensus 81 KK~ 83 (154)
|.+
T Consensus 174 kgP 176 (311)
T KOG1446|consen 174 KGP 176 (311)
T ss_pred CCC
Confidence 654
No 22
>KOG1290|consensus
Probab=23.18 E-value=35 Score=32.85 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=18.9
Q ss_pred CcccCccceeeccCCCCceeee
Q psy17706 2 FEHKGSLQHFRDTSSKPPSETK 23 (154)
Q Consensus 2 ~~~~~~~~~IRgl~PwPga~t~ 23 (154)
|...|.+||||=|.|||=.-+.
T Consensus 491 Fnr~G~LrhI~~LK~WpL~~VL 512 (590)
T KOG1290|consen 491 FNRRGELRHIRRLKPWPLYEVL 512 (590)
T ss_pred hccccceecccccCCCcHHHHH
Confidence 6778999999999999976554
No 23
>PHA02614 Major capsid protein VP1; Provisional
Probab=22.40 E-value=58 Score=29.75 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=23.2
Q ss_pred cccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 99 NESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 99 ~~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
+++--||||-+||= | ..||+ .|+|| |--||.-|
T Consensus 211 kNENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~Lyl 258 (363)
T PHA02614 211 KNENTRYFGTYTGGANTPPVLQFTNTSTTVLLDENGVGPLCKGDGLYL 258 (363)
T ss_pred cCcCceeeEeecCCCCCCCeEEecCcceEEEEcCCCcccCccCCcEEE
Confidence 34556999999882 2 33444 69999 88888755
No 24
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=21.65 E-value=47 Score=24.96 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.9
Q ss_pred ccccceecccCCCccccCCC
Q psy17706 108 MSTCPHSLTTPSGIGPCSHD 127 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~ 127 (154)
+--|=+..+||.|+|-||--
T Consensus 12 adggHdvvvTp~Gvg~CSpp 31 (96)
T PF15500_consen 12 ADGGHDVVVTPDGVGLCSPP 31 (96)
T ss_pred CCCCcceeECcccccccCCC
Confidence 44566788999999999964
No 25
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=21.41 E-value=55 Score=21.77 Aligned_cols=19 Identities=42% Similarity=0.805 Sum_probs=16.5
Q ss_pred CCccccCCCCceeeeecccc
Q psy17706 119 SGIGPCSHDGMTLCQTTDRF 138 (154)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~ 138 (154)
.||||---+||.| +++||-
T Consensus 7 ~gigp~De~giP~-~~vd~~ 25 (47)
T PF02208_consen 7 EGIGPVDESGIPL-SNVDRP 25 (47)
T ss_pred CCcCccccCCCcc-ccccch
Confidence 6999999999999 777764
Done!