Query psy17706
Match_columns 154
No_of_seqs 155 out of 1089
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 20:55:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfo_A Methionyl-tRNA formyltr 99.8 6.7E-22 2.3E-26 168.2 6.4 83 8-96 225-308 (317)
2 3q0i_A Methionyl-tRNA formyltr 99.8 8.7E-22 3E-26 167.6 6.5 81 8-94 228-308 (318)
3 3tqq_A Methionyl-tRNA formyltr 99.8 9.8E-22 3.3E-26 166.9 6.2 81 8-94 223-303 (314)
4 1fmt_A Methionyl-tRNA FMet for 99.8 2E-21 7E-26 164.7 6.8 81 8-94 224-304 (314)
5 2bln_A Protein YFBG; transfera 99.8 6.2E-20 2.1E-24 154.9 6.7 80 8-95 218-298 (305)
6 2bw0_A 10-FTHFDH, 10-formyltet 99.7 1.3E-18 4.6E-23 148.3 5.8 80 8-91 243-329 (329)
7 1z7e_A Protein aRNA; rossmann 99.7 1.1E-17 3.9E-22 149.5 6.4 80 8-95 218-298 (660)
8 1zgh_A Methionyl-tRNA formyltr 98.0 2.1E-06 7.1E-11 71.7 1.8 30 8-37 212-243 (260)
9 3hsh_A Endostatin, collagen al 63.2 4.3 0.00015 26.7 2.2 30 46-79 20-49 (56)
10 3n3f_A Collagen alpha-1(XV) ch 60.7 7.8 0.00027 25.2 3.1 30 45-78 17-46 (54)
11 1sva_1 Simian virus 40; virus 40.0 12 0.0004 32.8 1.8 32 100-131 215-261 (361)
12 1sid_A Polyomavirus coat prote 38.9 13 0.00043 32.8 1.8 33 99-131 233-280 (383)
13 3lag_A Uncharacterized protein 37.8 36 0.0012 23.0 3.7 24 17-40 5-28 (98)
14 1vps_A Polyomavirus VP1 pentam 36.0 14 0.00047 31.4 1.6 32 100-131 203-249 (289)
15 2ozi_A Hypothetical protein RP 35.1 42 0.0014 22.9 3.7 28 13-40 1-28 (98)
16 2fqp_A Hypothetical protein BP 34.8 92 0.0032 20.1 5.4 26 15-40 4-29 (97)
17 2jqo_A Hypothetical protein YO 24.5 74 0.0025 23.4 3.6 21 25-53 73-93 (108)
18 3s7v_A Major capsid protein VP 24.1 34 0.0012 28.9 2.0 33 99-131 198-245 (277)
19 3iys_A Major capsid protein VP 22.6 36 0.0012 29.5 1.8 33 99-131 205-252 (343)
20 3nxg_A Major capsid protein VP 22.5 29 0.00099 29.3 1.2 33 99-131 189-236 (272)
21 4fmh_A VP1; viral capsid prote 21.5 31 0.0011 29.3 1.2 32 100-131 207-253 (289)
No 1
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=99.85 E-value=6.7e-22 Score=168.23 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=73.6
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcE-EEEceeecCCCCcCCH
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKS-ILCSQITVAGKKKMTA 86 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~-L~I~eVQ~eGKK~MsA 86 (154)
+++||||+||||||+.++|+++|||++++.+.. ....||+|+... ++++.|+|+|| . |.|.+||++|||+|++
T Consensus 225 ~~~iRa~~p~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~i~~~~-~~~l~V~~~dg-~~l~i~~lq~~gkk~m~a 298 (317)
T 3rfo_A 225 YNHIRGLNPWPVAYTTLAGQVVKVWWGEKVPVT----KSAEAGTIVAIE-EDGFVVATGNE-TGVKITELQPSGKKRMSC 298 (317)
T ss_dssp HHHHHHTTTTTCCEEEETTEEEEEEEEEEEECS----SCCCTTBEEEEC-SSCEEECCSSS-EEEEEEEEEETTSCCEEH
T ss_pred HHHHhccCCCCceEEEECCeEEEEEEEEEecCC----CCCCCcEEEEec-CCeEEEEeCCC-CEEEEEEEEcCCCCccCH
Confidence 689999999999999999999999999887533 346799998544 57899999999 8 9999999999999999
Q ss_pred HHHHcccCCC
Q psy17706 87 VDFKNGYLGK 96 (154)
Q Consensus 87 ~DFLNG~~~~ 96 (154)
.||+||+...
T Consensus 299 ~~f~~g~~~~ 308 (317)
T 3rfo_A 299 SQFLRGTKPE 308 (317)
T ss_dssp HHHHHHCCCC
T ss_pred HHHhccCCCC
Confidence 9999998753
No 2
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=99.84 E-value=8.7e-22 Score=167.62 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=73.1
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV 87 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~ 87 (154)
+++||||+||||||+.++|+++|||++++.+.. ....||+|+... ++++.|+|+|| +|.|.+||++|||+|+++
T Consensus 228 ~~~iRa~~P~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~lq~~gkk~m~a~ 301 (318)
T 3q0i_A 228 ERCIRAFNPWPMSHFEVAENSIKVWQARVETRA----VTQTPGTIIQAD-KSGIYVATGQD-VLVLESLQIPGKKALPVQ 301 (318)
T ss_dssp HHHHHHTTTTTCCEEEETTEEEEEEEEEEECCC----CCSCTTBEEEEE-TTEEEEECSBS-EEEEEEEECTTSCCEEHH
T ss_pred HHHHhccCCCCceEEEECCEEEEEEEEEEecCC----CCCCCcEEEEEc-CCEEEEEECCc-EEEEEEEEcCCCCcccHH
Confidence 689999999999999999999999999987533 346799998554 57899999999 999999999999999999
Q ss_pred HHHcccC
Q psy17706 88 DFKNGYL 94 (154)
Q Consensus 88 DFLNG~~ 94 (154)
||+||+.
T Consensus 302 ~f~~g~~ 308 (318)
T 3q0i_A 302 DILNARA 308 (318)
T ss_dssp HHHHHHT
T ss_pred HHhccCc
Confidence 9999987
No 3
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=99.84 E-value=9.8e-22 Score=166.87 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=73.0
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV 87 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~ 87 (154)
+++||||+||||||+.++|+++|||++++.+.. ....||+|+... ++++.|+|+|| +|.|.+||++|||+|+++
T Consensus 223 ~~~iRa~~P~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~v~~~~-~~~l~V~~~dg-~l~i~~lq~~gkk~m~~~ 296 (314)
T 3tqq_A 223 ARQVRAFNPTPIAFTYFEGQPMRIWRATVVDEK----TDFEPGVLVDAD-KKGISIAAGSG-ILRLHQLQLPGKRVCSAG 296 (314)
T ss_dssp HHHHHHTTTTTCCEEEETTEEEEEEEEEEECCC----CSSCTTCEEEEE-TTEEEEECSBS-EEEEEEEECTTSCCEEHH
T ss_pred HHHHhccCCCCceEEEECCEEEEEEEEEEecCC----CCCCCcEEEEec-CCEEEEEECCC-EEEEeEEEcCCCCccCHH
Confidence 689999999999999999999999999987532 346799998554 57999999999 999999999999999999
Q ss_pred HHHcccC
Q psy17706 88 DFKNGYL 94 (154)
Q Consensus 88 DFLNG~~ 94 (154)
||+||+.
T Consensus 297 ~f~~g~~ 303 (314)
T 3tqq_A 297 DFINAHG 303 (314)
T ss_dssp HHHHHHG
T ss_pred HHhccCc
Confidence 9999986
No 4
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=99.84 E-value=2e-21 Score=164.71 Aligned_cols=81 Identities=21% Similarity=0.167 Sum_probs=72.0
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV 87 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~ 87 (154)
+++||||+|||||||.++|+++|||++++.+.. ....||+|+... ++++.|+|+|| +|.|.+||++|||+|++.
T Consensus 224 ~~~iRa~~p~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~~q~~gkk~m~a~ 297 (314)
T 1fmt_A 224 ERCIRAFNPWPMSWLEIEGQPVKVWKASVIDTA----TNAAPGTILEAN-KQGIQVATGDG-ILNLLSLQPAGKKAMSAQ 297 (314)
T ss_dssp HHHHHHTTTTTCEEEEETTEEEEEEEEEEECCC----CCSCTTBEEEEE-TTEEEEECSBS-EEEEEEEEETTSCCEEHH
T ss_pred HHHHhccCCCCceEEEECCEEEEEEEEEEccCC----CCCCCceEEEec-CCEEEEEeCCC-EEEEEEEEcCCCCCCCHH
Confidence 689999999999999999999999999887422 234799998544 57899999999 999999999999999999
Q ss_pred HHHcccC
Q psy17706 88 DFKNGYL 94 (154)
Q Consensus 88 DFLNG~~ 94 (154)
||+||+.
T Consensus 298 ~~~~g~~ 304 (314)
T 1fmt_A 298 DLLNSRR 304 (314)
T ss_dssp HHHHHSG
T ss_pred HHhccCC
Confidence 9999986
No 5
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=99.79 E-value=6.2e-20 Score=154.89 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=69.9
Q ss_pred cceeecc-CCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706 8 LQHFRDT-SSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA 86 (154)
Q Consensus 8 ~~~IRgl-~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA 86 (154)
+++|||| +||||||+.++|+++|||++++.+.. ....||+|+. .+ ++.|+|+|| +|.|.+||++|||+|++
T Consensus 218 ~~~iRa~~~p~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~i~~-~~--~~~V~~~dg-~l~i~~~q~~gkk~m~~ 289 (305)
T 2bln_A 218 HNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHA----SKAQPGSVIS-VA--PLLIACGDG-ALEIVTGQAGDGITMQG 289 (305)
T ss_dssp HHHHHHTCTTSCCEEEEETTEEEEEEEEEEECSC----CCSCTTBEEE-ET--TEEEECSBS-EEEEEEEEETTSCCEEH
T ss_pred HHHHhccCCCCCceEEEECCEEEEEEEEEEccCC----CCCCCCEEEE-EC--CEEEEeCCc-eEEEEEEecCCCceecH
Confidence 6899999 59999999999999999999887432 2357999974 32 499999999 99999999999999999
Q ss_pred HHHHcccCC
Q psy17706 87 VDFKNGYLG 95 (154)
Q Consensus 87 ~DFLNG~~~ 95 (154)
.||+||+..
T Consensus 290 ~~~~~g~~~ 298 (305)
T 2bln_A 290 SQLAQTLGL 298 (305)
T ss_dssp HHHHHHHTC
T ss_pred HHHHhcCCC
Confidence 999999864
No 6
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=99.74 E-value=1.3e-18 Score=148.25 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=66.4
Q ss_pred cceeeccCCCCceeeeeCCceeeeeeeEecCcCC-C------CCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCC
Q psy17706 8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETN-P------ITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAG 80 (154)
Q Consensus 8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~-~------~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eG 80 (154)
+++||||+||||||+.++|+++|||++++.+... + ......||+|. +++++|+|+||.+|.|.+||++|
T Consensus 243 ~~~iRa~~p~Pga~t~~~g~~~ki~~a~~~~~~~~~~g~~~~~~~~~~pG~i~----~~~~~V~~~dg~~l~i~~lq~~g 318 (329)
T 2bw0_A 243 HNWIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVT----KAGLILFGNDDKMLLVKNIQLED 318 (329)
T ss_dssp HHHHHTTTTTTCCEEEETTEEEEEEEEESCCTTCCCCSEEECCTTCSSCEEEE----TTEEEEECTTSCEEEEEEEECTT
T ss_pred HHHHhccCCCCceEEEECCEEEEEEEEEEecccccccccccccccCCCCeEEE----CCeEEEEeCCCCEEEEeEEECCC
Confidence 6899999999999999999999999998764320 0 00124699982 47899999999449999999999
Q ss_pred CCcCCHHHHHc
Q psy17706 81 KKKMTAVDFKN 91 (154)
Q Consensus 81 KK~MsA~DFLN 91 (154)
||+|+++||+|
T Consensus 319 kk~m~a~~~~~ 329 (329)
T 2bw0_A 319 GKMILASNFFK 329 (329)
T ss_dssp SCEEEGGGTTC
T ss_pred CCcCCHHHHhC
Confidence 99999999986
No 7
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=99.70 E-value=1.1e-17 Score=149.45 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=69.7
Q ss_pred cceeecc-CCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706 8 LQHFRDT-SSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA 86 (154)
Q Consensus 8 ~~~IRgl-~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA 86 (154)
+++|||| +||||||+.++|+++|||++++.++. ....||+|+. .+ .+.|+|+|| +|.|.+||++|||.|++
T Consensus 218 ~~~ira~~~p~p~a~~~~~~~~~~i~~~~~~~~~----~~~~pG~i~~-~~--~~~v~~~~g-~~~i~~~q~~g~~~m~a 289 (660)
T 1z7e_A 218 HNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHA----SKAQPGSVIS-VA--PLLIACGDG-ALEIVTGQAGDGITMQG 289 (660)
T ss_dssp HHHHHHTCTTSCCEEEEETTEEEEEEECCEECCC----CSSCTTSEEE-ET--TEEEECSBS-EEEECEEEETTSCCEEH
T ss_pred HHHHhccCCCCCceEEEECCEEEEEEEEEEcccc----CCCCCcEEEe-cC--cEEEEeCCC-eEEEEEeccCCCCcccH
Confidence 6899999 59999999999999999999887432 2357999984 32 399999999 99999999999999999
Q ss_pred HHHHcccCC
Q psy17706 87 VDFKNGYLG 95 (154)
Q Consensus 87 ~DFLNG~~~ 95 (154)
.||+||+..
T Consensus 290 ~d~l~g~~l 298 (660)
T 1z7e_A 290 SQLAQTLGL 298 (660)
T ss_dssp HHHHHTTTC
T ss_pred HHHHhhcCC
Confidence 999999865
No 8
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=97.96 E-value=2.1e-06 Score=71.71 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=28.3
Q ss_pred cceeeccC--CCCceeeeeCCceeeeeeeEec
Q psy17706 8 LQHFRDTS--SKPPSETKEPPERSKEPTDRLT 37 (154)
Q Consensus 8 ~~~IRgl~--PwPga~t~l~GkrlKI~~~~l~ 37 (154)
+++||||+ ||||||+.++|+++|||++++.
T Consensus 212 ~~~IRa~~~~p~PgA~t~~~g~~~ki~~a~~~ 243 (260)
T 1zgh_A 212 YDYIRMLDGEGYPRAFIKYGKYRLEFSRASMK 243 (260)
T ss_dssp HHHHHHTCSTTCCCCEEEETTEEEEEEEEEEE
T ss_pred HHHHHhhCCCCCCcEEEEECCEEEEEEEEEEc
Confidence 68999996 9999999999999999999987
No 9
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=63.23 E-value=4.3 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.4
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecC
Q psy17706 46 ELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVA 79 (154)
Q Consensus 46 ~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~e 79 (154)
..+.|+++|..++..|+|...+| .++||++
T Consensus 20 ~~~eGtL~yv~d~~eLyiRVr~G----wr~v~Lg 49 (56)
T 3hsh_A 20 EVPEGWLIFVAEQEELYVRVQNG----FRKVQLE 49 (56)
T ss_dssp GSCTTCEEEETTTTEEEEEETTE----EEEECEE
T ss_pred cCCCeeEEEEEecceEEEEEcCc----eeeeeec
Confidence 45679999988888999999999 4666663
No 10
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=60.68 E-value=7.8 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.8
Q ss_pred CCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeec
Q psy17706 45 PELTPGFVSFDRGSKLLRVRCVDGKSILCSQITV 78 (154)
Q Consensus 45 ~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~ 78 (154)
...+.|++.|..++..|+|...+| .++||+
T Consensus 17 ~~~~eGtL~yv~d~~eLyiRVr~G----wr~v~L 46 (54)
T 3n3f_A 17 HLVIEGTFIYLRDSTEFFIRVRDG----WKKLQL 46 (54)
T ss_dssp GGSCTTEEEEETTTTEEEEEETTE----EEECCC
T ss_pred ccCCCeeEEEEEecceEEEEEcCc----eeeeec
Confidence 345679999988888999999999 466776
No 11
>1sva_1 Simian virus 40; virus coat protein, icosahedral virus; 3.10A {Simian virus 40} SCOP: b.121.6.1
Probab=40.00 E-value=12 Score=32.78 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=23.0
Q ss_pred ccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 100 ESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 100 ~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
++--||||-+||= | ..||+ .|+|| |-+||.-|
T Consensus 215 NENtRYFG~~tGG~~TPPVlqftNt~TTvLLDENGVGpLCkgd~Lyl 261 (361)
T 1sva_1 215 NENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYV 261 (361)
T ss_dssp CTTEEEEEEEECCSSCCCEEEEETTCCEECCCTTSCCCBCSSSEEEE
T ss_pred CcCceeeEEecCCCCCCCeEEecCceeEEEEcCCCccccccCCcEEE
Confidence 4556999999883 2 23443 69999 99999765
No 12
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=38.87 E-value=13 Score=32.79 Aligned_cols=33 Identities=39% Similarity=0.714 Sum_probs=23.3
Q ss_pred cccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 99 NESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 99 ~~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
++.--||||-+||= | ..||+ .|+|| |-+||.-|
T Consensus 233 kNENtRYFG~~tGG~~TPPVlqftNt~TTvLLDENGVGpLCkgd~Lyl 280 (383)
T 1sid_A 233 KNENTRYFGNYTGGTTTPPVLQFTNTLTTVLLDENGVGPLCKGEGLYL 280 (383)
T ss_dssp SSCSEEEEEEEECCSSCCCEEEEESSCEEECCCTTSCCCBCSSSEEEE
T ss_pred cCcCceeeEEecCCCCCCCeEEeccceeEEEEcCCCccccccCCcEEE
Confidence 34556999999883 2 23443 69999 99998754
No 13
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=37.78 E-value=36 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=17.9
Q ss_pred CCceeeeeCCceeeeeeeEecCcC
Q psy17706 17 KPPSETKEPPERSKEPTDRLTEET 40 (154)
Q Consensus 17 wPga~t~l~GkrlKI~~~~l~~~~ 40 (154)
-..+-..+++.++||+..++.++.
T Consensus 5 ~a~~~V~ien~~~rV~r~~i~PG~ 28 (98)
T 3lag_A 5 AAKSEIQIDNDEVRVTEWRLPPGS 28 (98)
T ss_dssp ECEEEEEEESSSEEEEEEEECTTE
T ss_pred cceeeEEEcCCeEEEEEEEECCCC
Confidence 344556789999999999887543
No 14
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=36.04 E-value=14 Score=31.45 Aligned_cols=32 Identities=41% Similarity=0.746 Sum_probs=22.0
Q ss_pred ccccccccccccce----------ecccC----CCccc-cCCCCcee
Q psy17706 100 ESDKRYKGMSTCPH----------SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 100 ~~~~~~~~~~~~~~----------~~~~~----~~~~~-~~~~~~~~ 131 (154)
++--||||-+||=. .+||+ .|+|| |-+||.-|
T Consensus 203 NENtRYFG~~tGG~~TPpvl~ftNt~TtvLldEnGvGpLCkgd~ly~ 249 (289)
T 1vps_A 203 NENTRYFGNYTGGTTTPPVLQFTNTLTTVLLDENGVGPLCKGEGLYL 249 (289)
T ss_dssp CTTEEEEEEEECCSSCCCEEEEESSCCEECCCTTSCCCEESSSEEEE
T ss_pred CcCceeeeeecCCCCCCCeEEecCceeEEEEcCCCccccccCCcEEE
Confidence 34459999988732 23333 59999 99998754
No 15
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=35.10 E-value=42 Score=22.86 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=20.2
Q ss_pred ccCCCCceeeeeCCceeeeeeeEecCcC
Q psy17706 13 DTSSKPPSETKEPPERSKEPTDRLTEET 40 (154)
Q Consensus 13 gl~PwPga~t~l~GkrlKI~~~~l~~~~ 40 (154)
|+.|--....++++.+++||..++..+.
T Consensus 1 ~~~~~~~~tv~~~~~~v~v~~~~l~PG~ 28 (98)
T 2ozi_A 1 GMTVAAKSEIQIDNDEVRVTEWRLPPGS 28 (98)
T ss_dssp CCCEECEEEEEEESSSEEEEEEEECTTE
T ss_pred CCCCcceeEEEEeCCcEEEEEEEECCCC
Confidence 3444445677788999999999988543
No 16
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=34.77 E-value=92 Score=20.12 Aligned_cols=26 Identities=15% Similarity=0.030 Sum_probs=22.4
Q ss_pred CCCCceeeeeCCceeeeeeeEecCcC
Q psy17706 15 SSKPPSETKEPPERSKEPTDRLTEET 40 (154)
Q Consensus 15 ~PwPga~t~l~GkrlKI~~~~l~~~~ 40 (154)
+||+......++.++.++.+++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Pg~ 29 (97)
T 2fqp_A 4 RPGAIPTVQIDNERVKVTEWRFPPGG 29 (97)
T ss_dssp CCBCEEEEEEESSSEEEEEEEECTTC
T ss_pred cCCCceeEEEcCCeEEEEEEEECCCC
Confidence 79999988889999999999887544
No 17
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=24.52 E-value=74 Score=23.40 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=16.8
Q ss_pred CCceeeeeeeEecCcCCCCCCCCCCcEEE
Q psy17706 25 PPERSKEPTDRLTEETNPITPELTPGFVS 53 (154)
Q Consensus 25 ~GkrlKI~~~~l~~~~~~~~~~~~PGtIv 53 (154)
.|+.+|||-.++.+. -|+.+.
T Consensus 73 ~GdKIKVW~s~iLES--------yPaK~~ 93 (108)
T 2jqo_A 73 RGEKIKVWFHTRKES--------NPPSAT 93 (108)
T ss_dssp TTEEEEEEEEEEECS--------SSCEEE
T ss_pred CCCEEEEEehhhhhh--------CCcchh
Confidence 789999999999863 377764
No 18
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=24.11 E-value=34 Score=28.89 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=23.5
Q ss_pred cccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 99 NESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 99 ~~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
+++--||||-+||= | .+||+ .|+|| |--||.-|
T Consensus 198 kNENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~Lyl 245 (277)
T 3s7v_A 198 RNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYI 245 (277)
T ss_dssp SCCSEEEEEEEECCSSCCCEEEEESSCCEECCCTTSCCEECTTSCEEE
T ss_pred cCcCceeeEEecCCCCCCCeEEecCceeEEEEcCCCccccccCCcEEE
Confidence 34556999998873 2 33444 69999 98898765
No 19
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=22.65 E-value=36 Score=29.55 Aligned_cols=33 Identities=39% Similarity=0.680 Sum_probs=23.2
Q ss_pred cccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 99 NESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 99 ~~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
+++--||||-+||= | .+||+ .|+|| |--||.-|
T Consensus 205 kNENtRYFG~~tGG~~TPPVlqftNt~TTvLLDENGVGpLCkgd~Lyl 252 (343)
T 3iys_A 205 KNENTRYYGNLTGGPETPPVLAFTNTTTTILLDENGVGPLCKGDGLFL 252 (343)
T ss_pred cCcCceeeEEecCCCCCCCeEEeccceeEEEEcCCCccccccCCcEEE
Confidence 34556999999873 2 34444 69999 88888765
No 20
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Probab=22.51 E-value=29 Score=29.26 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=22.9
Q ss_pred cccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 99 NESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 99 ~~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
+++--||||-+||= | .+||+ .|+|| |--||.-|
T Consensus 189 kNENtRYfG~~tGG~~TPPVlqftNt~TTvLLDENGVGpLCkgd~Lyl 236 (272)
T 3nxg_A 189 RNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYL 236 (272)
T ss_dssp SCTTEEEEEEEECSTTCCCEEEEESSCCEECCCTTSCCCBCGGGEEEE
T ss_pred cCcCceeEEEecCCCCCCCeEEecCceeEEEEcCCCccccccCCcEEE
Confidence 34556999998872 2 33444 59999 88888765
No 21
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=21.50 E-value=31 Score=29.33 Aligned_cols=32 Identities=38% Similarity=0.745 Sum_probs=21.8
Q ss_pred ccccccccccccc-----e-----ecccC----CCccc-cCCCCcee
Q psy17706 100 ESDKRYKGMSTCP-----H-----SLTTP----SGIGP-CSHDGMTL 131 (154)
Q Consensus 100 ~~~~~~~~~~~~~-----~-----~~~~~----~~~~~-~~~~~~~~ 131 (154)
++--||||-+||= + .+||+ .|||| |--||.-|
T Consensus 207 NENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~Lyl 253 (289)
T 4fmh_A 207 NENSRYYGSIQTGSQTPTVLQFSNTLTTVLLDENGVGPLCKGDGLFI 253 (289)
T ss_dssp CTTEEEEEEEECSSSCCCEEEEETTCCEECCCTTSCCCBCGGGEEEE
T ss_pred CcCceeeeEecCCCCCCCeEEecCceeEEEEcCCCcccceeCCcEEE
Confidence 4456999998873 2 23443 59999 88887654
Done!