RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17706
         (154 letters)



>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet
          formyltransferase, C-terminal domain {Escherichia coli
          [TaxId: 562]}
          Length = 108

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 54 FDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
           +   + ++V   DG  +    +  AGKK M+A D  N  
Sbjct: 59 LEANKQGIQVATGDG-ILNLLSLQPAGKKAMSAQDLLNSR 97


>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA,
          domain 2 {Escherichia coli [TaxId: 562]}
          Length = 101

 Score = 31.7 bits (71), Expect = 0.009
 Identities = 5/33 (15%), Positives = 8/33 (24%), Gaps = 1/33 (3%)

Query: 61 LRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
          L + C DG ++            M         
Sbjct: 62 LLIACGDG-ALEIVTGQAGDGITMQGSQLAQTL 93


>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate
           dehydrogenase domain 2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 104

 Score = 30.9 bits (69), Expect = 0.019
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 65  CVDGKSILCSQITVAGKKKMTAVDF 89
             D K +L   I +   K + A +F
Sbjct: 78  GNDDKMLLVKNIQLEDGKMILASNF 102


>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 102

 Score = 25.0 bits (55), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 56 RGSKLLRVRCVDGKSILCSQITVAGKKK 83
           G+  +RVRC+DGK+ L     + G+ K
Sbjct: 30 LGASRVRVRCLDGKTRLGR---IPGRLK 54


>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 95

 Score = 24.4 bits (53), Expect = 4.1
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 52 VSFDRGSKLLRVRCVDGKSILCSQITVAGK 81
          V+F      L V  VDG  +    + ++G 
Sbjct: 63 VTFADSHSALSVLDVDGMKVKGRAVKISGP 92


>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1
          {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 23.8 bits (52), Expect = 4.4
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 57 GSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKV 97
           +   RV+   G  IL     ++GK +M  +    G    V
Sbjct: 18 PNATFRVKLDSGPEILA---YISGKMRMHYIRILPGDRVVV 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,497
Number of extensions: 24222
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.2 bits)