Query psy17708
Match_columns 893
No_of_seqs 543 out of 2718
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:58:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3539|consensus 100.0 5E-101 1E-105 829.9 23.1 454 116-629 1-508 (508)
2 KOG3539|consensus 100.0 4.9E-74 1.1E-78 620.4 14.6 206 2-207 123-329 (508)
3 PF06468 Spond_N: Spondin_N; 100.0 6.2E-66 1.4E-70 524.6 14.9 195 8-203 1-196 (196)
4 PF06468 Spond_N: Spondin_N; 100.0 1.1E-57 2.4E-62 464.2 10.4 194 300-494 1-195 (196)
5 KOG4597|consensus 99.9 3.5E-22 7.7E-27 217.6 16.9 330 517-892 150-518 (560)
6 KOG4597|consensus 99.5 5.6E-14 1.2E-18 154.1 13.4 276 508-832 200-510 (560)
7 smart00209 TSP1 Thrombospondin 99.0 3.3E-10 7.1E-15 91.6 5.1 52 830-881 1-53 (53)
8 PF00090 TSP_1: Thrombospondin 99.0 8.5E-11 1.8E-15 93.4 1.6 49 831-880 1-49 (49)
9 KOG3538|consensus 99.0 1.9E-08 4E-13 125.6 20.7 58 507-566 477-535 (845)
10 PTZ00087 thrombosponding-relat 98.8 2E-09 4.4E-14 110.6 4.0 50 828-881 231-285 (340)
11 smart00209 TSP1 Thrombospondin 98.7 1.5E-08 3.2E-13 81.9 5.3 50 580-630 1-53 (53)
12 KOG3538|consensus 98.7 3E-07 6.5E-12 115.0 19.4 56 575-631 477-535 (845)
13 PF00090 TSP_1: Thrombospondin 98.7 1.1E-08 2.4E-13 81.2 4.1 48 581-629 1-49 (49)
14 PF02014 Reeler: Reeler domain 98.6 4.5E-08 9.8E-13 94.9 5.1 63 210-273 65-132 (132)
15 cd08544 Reeler Reeler, the N-t 98.6 6.2E-08 1.3E-12 94.3 5.7 72 208-282 61-135 (135)
16 PTZ00087 thrombosponding-relat 98.5 9.9E-08 2.1E-12 98.4 4.8 51 578-630 231-285 (340)
17 smart00131 KU BPTI/Kunitz fami 98.3 4E-07 8.7E-12 73.7 3.1 52 703-754 2-53 (53)
18 cd00109 KU BPTI/Kunitz family 98.3 4.8E-07 1E-11 73.6 3.3 53 703-755 2-54 (54)
19 PF00014 Kunitz_BPTI: Kunitz/B 98.2 8E-07 1.7E-11 71.8 2.0 53 703-755 1-53 (53)
20 PTZ00441 sporozoite surface pr 98.0 3.1E-06 6.7E-11 98.6 4.4 43 831-881 241-283 (576)
21 KOG1480|consensus 98.0 4.8E-06 1E-10 97.4 4.1 59 821-882 271-330 (909)
22 PTZ00441 sporozoite surface pr 97.6 4.4E-05 9.6E-10 89.2 4.4 48 507-566 237-284 (576)
23 KOG4295|consensus 97.1 0.00028 6.1E-09 77.7 2.5 62 700-761 75-139 (295)
24 KOG1480|consensus 97.0 0.00058 1.3E-08 80.6 4.5 93 508-616 220-316 (909)
25 cd08523 Reeler_cohesin_like Do 95.4 0.049 1.1E-06 51.9 7.0 107 155-279 9-123 (124)
26 PF01091 PTN_MK_C: PTN/MK hepa 49.6 11 0.00023 31.7 1.7 45 577-625 3-47 (63)
27 PF01091 PTN_MK_C: PTN/MK hepa 48.1 11 0.00024 31.6 1.6 42 832-877 7-48 (63)
28 smart00131 KU BPTI/Kunitz fami 23.4 33 0.00072 27.3 0.5 36 772-807 18-53 (53)
29 cd00109 KU BPTI/Kunitz family 20.4 45 0.00098 26.6 0.8 37 771-807 17-53 (54)
No 1
>KOG3539|consensus
Probab=100.00 E-value=5e-101 Score=829.89 Aligned_cols=454 Identities=41% Similarity=0.830 Sum_probs=409.3
Q ss_pred EEEeeeccCCCCeEEEeCCcccccCCCcccccEEEEeecccCCCCcccccccCCCCCCCccceeecccCCCCCCCCCCCC
Q psy17708 116 ISLVSMLGPSPDWLVGVSGLNLCLPNCTWIEGQIIDLYPYDAGTDNGVSYMSINIPAVPQEKIHKITPMYPEDERAPFYD 195 (893)
Q Consensus 116 ~S~~~m~~pSpDwfvG~~~~~lc~~~~~w~~~~~~~l~p~DAGTd~g~t~~s~~~~t~p~~~i~~it~~~p~~~~~~fy~ 195 (893)
+++++|++|++ |.+|+..++|+...+.|+......|.+||+|||+|+||.
T Consensus 1 ~~~l~~~g~~~-~~~~~~~~d~~a~~~~~~~~~~~~~g~w~v~~~~~~t~~----------------------------- 50 (508)
T KOG3539|consen 1 MYFLTMMGPRT-QNVGLSAEDLEAHECGWLAKDVQSLGPWQVGTDSGVTRF----------------------------- 50 (508)
T ss_pred CceEEEecccc-cccceecccccccccchhcccccccccceeccCccceee-----------------------------
Confidence 36899999999 999999999999888899999999999999999999963
Q ss_pred CCCCccCcccccCCCCCceEecCCCCcccccccccchhhhcccCccceEEEEEeCCCCCCCceEEeeeeeeccce-ecCc
Q psy17708 196 PVNNFMYPLCDQSSSPGSLQLLPNDQLTEFDDDCTNTISEANTTLKTQVQVMWLAPPTGNGCVRIKANVLANNQL-YGDS 274 (893)
Q Consensus 196 ~~~~~~~p~~~~~~~~G~f~l~~~~~~~~~~~~c~~~~~~~~~~~k~~~~~~w~ap~~~~~c~~~~a~v~~~~~~-~~~~ 274 (893)
+.+|+|.|+++++.+||+|+|+|+||..++|||.++|+|++++++ |+|+
T Consensus 51 ------------------------------sP~c~~~V~~~~~~~kT~v~~~w~ape~~~Gci~l~A~v~e~r~~~~~dd 100 (508)
T KOG3539|consen 51 ------------------------------SPRCPNSVENANDRPKTSVDVMWVAPESPSGCITLRARVMENRIAWFTDD 100 (508)
T ss_pred ------------------------------CCCCccccccCCCCccccccceeecCCCCCcceEEeeeeccccceecccC
Confidence 345677788889999999999999999999999999999999999 9999
Q ss_pred Cccchhhhhccccccccccc---ccccCCceeEEEEeeeccCCCCCCCCCCcccccccccccccccCCCcccccCCCccC
Q psy17708 275 GKLTREICEYTENKEEKYMD---CCACDEARYKFIFEGLWRNETHPKDFPKSLWLTHFSDVVGGTHGKNFSFWGEGQIAS 351 (893)
Q Consensus 275 ~~l~~~~c~~~~~~~~~~~~---c~~c~~a~y~~~f~~~w~~~~~p~~~p~~~~~~~~s~~ig~sH~~~~~~w~~g~~as 351 (893)
++|+..+|++..++..++.. ||||+.|||+|+|+|+||+++||||||.++|++|||++||++|+++|+||.+|++|+
T Consensus 101 ~~l~~~l~~~~~~a~~p~~~~~~C~a~~~AkY~~~f~g~WS~~t~PK~yP~~r~~t~~s~~lGasH~snys~w~~g~~at 180 (508)
T KOG3539|consen 101 GNLVPDLCETKVAAIAPQEKPQTCCACDPAKYSLVFTGKWSRETHPKDYPGKRPRTRFSDALGASHSSNYSLWDIGQIAT 180 (508)
T ss_pred CCcchhhhhhhhhccCCCCCCCccccCChhheEEEEeeeecccCCccccCccchHHHHHHHhhhhcCCCcchhhcCcccc
Confidence 99999999998776666555 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCchhhhHHHHHhccccceeeeeccCccC-CCCCCCcceeeeecccCceeeeeeeccCCCCcceecCCcccc
Q psy17708 352 PGLKQLAEWGATRIIDSELRSKSRHFRSLVKATGLWY-PGVNANTSSTFRVDKRRNLISLVSMLGPSPDWLVGVSGLNLC 430 (893)
Q Consensus 352 ~g~~~~aE~G~~~~l~~e~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~vd~~~~~~S~~~m~~pspDwfvGv~~~~lc 430 (893)
+|||++||+|.+..||.|+++++..+|+||++.|++| |++.|.+++.|+||+.||||||++||+|||||||||++||||
T Consensus 181 ~G~rd~AE~G~t~~le~e~~a~~s~~rsv~~~~~~~yvP~~~g~tsa~~~Vd~~H~lvSlvt~~~PSPDW~vGv~sldLC 260 (508)
T KOG3539|consen 181 AGLRDFAESGSTMALESELKAPGSALRSVIKVFGLPYVPNVTGDTSAKFRVDSNHSLVSLVTMIVPSPDWVVGVSSLDLC 260 (508)
T ss_pred hhhhhhhhcCcHHHHHHHHhCcchhhhHHHHhhcCccccCCCCCcceEEEecCCcceEEEEEEecCCCceEEeechhhhc
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeceEEeeccCCCCCCCCcCcccCCCCCCcccceeEecCCCCCCCCCCcccCcccccccc-------------c
Q psy17708 431 LPNCTWIEGQVIDLYPYDAGTDNGVSYMSINIPAVPQEKIHKITPMYPEDERAPFYDPVSEMMDEI-------------S 497 (893)
Q Consensus 431 ~~~~~~~~~~~~~l~p~DaGtdsG~ty~s~n~~~~p~~~I~~it~~~p~d~~spFy~p~~~~~~~~-------------~ 497 (893)
+.+|+|++.++++|+|||||||+|.+|++||++++|+++|++||+.||.||++|||+|+.+.|+.+ +
T Consensus 261 ~~~csW~e~~~~~L~P~DAGTDsG~ty~spn~pteP~~~i~~ITs~~p~~P~s~FY~pks~~lpplAt~~l~r~~~~e~n 340 (508)
T KOG3539|consen 261 LGDCSWGEKKTHELYPWDAGTDSGFTYMSPNSPTEPQDVIYRITSPYPLHPASPFYDPKSKCLPPLATVQLRRKKLYELN 340 (508)
T ss_pred cCCCcchhhceeeecccccCCCCCccccCCCCCCCCCCCceEeccCCCCCCcccccCcccccCCchhhhhHHHhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999988821 1
Q ss_pred ccCC--------------ccccCCCCCCccccCCCCCCcCCCCCCeEEEEEeeecCCCCCcCccccccccccccccCCCC
Q psy17708 498 IVDN--------------EEEASRPECAVTPYTPWSNCSATCGKGLRMRSRTYVNPASARAAECDRQLVSKEMCIAENPT 563 (893)
Q Consensus 498 ~~~~--------------~e~~~~~~C~~s~Ws~WS~CS~TCG~G~r~R~R~c~~~~~~~~~~C~~~~~e~~~C~~~~~~ 563 (893)
..++ .++.++.+|.+++|+.|++|+++||+|.|+|.|.++++..+....|..++++...|+.....
T Consensus 341 c~edd~~~~~~~~~~~~~~~~e~p~eC~vs~ws~Ws~C~~sCGkg~r~R~R~yv~p~~a~~~~~~pe~~e~~~Cva~~c~ 420 (508)
T KOG3539|consen 341 CNEDDEQAEKCMNPTHLSAEHETPLECEVSEWSQWSECSKSCGKGIRIRIRAYVNPIPASNGSCCPELVEEKKCVAKKCE 420 (508)
T ss_pred cCcchHHHhhhcCccccccccCCcccceecccccchhhhhccCCCceEEEEEEecccccccCCCCcchhhhhhccccccc
Confidence 1111 11237889999999999999999999999999999999999999999999999999977666
Q ss_pred CCCC-------Cccee------------ecccccCCcccCCCCCCCcccCCCeEeeEEeecCCCCCCCCCCCCccc---e
Q psy17708 564 CPGE-------EEEEQ------------VEGKECKVGEWEAWSECSVSCGQGLRTRVRRFPDKKTAKKCPHVELVE---R 621 (893)
Q Consensus 564 C~~~-------~~~~~------------c~~~~C~~s~Ws~WS~CS~tCG~G~r~R~r~C~~~~~~~~C~~~~~~e---~ 621 (893)
|... +..+. ...+.|.++.|++||+||++||.|++.|.|..+++...+.|+...... +
T Consensus 421 ~a~~~~~~~~~e~~e~~~~~~a~~~~~s~~~~~Cr~s~Ws~WseCs~sCG~G~~~R~rt~~n~~~r~~c~~~t~~k~~~~ 500 (508)
T KOG3539|consen 421 CAPSIQKLRNREAAESRRSENARKPSDSEQFPGCRVSPWSEWSECSKSCGGGIMERYRTVLNHFKRKQCPQFTSCKKKKT 500 (508)
T ss_pred ccchhhhhhhhhhhhccchhhccCCCCcccCCCCcccccchhhhhhhhcCCcceehhhhhhcccccccCcchhhhhhccc
Confidence 6322 00000 123469999999999999999999999999999988888898653222 2
Q ss_pred eeccCCCC
Q psy17708 622 EPCIESPC 629 (893)
Q Consensus 622 ~~C~~~~C 629 (893)
..|+..+|
T Consensus 501 ~rC~~~~c 508 (508)
T KOG3539|consen 501 IRCNGHDC 508 (508)
T ss_pred ccccCCCC
Confidence 22666554
No 2
>KOG3539|consensus
Probab=100.00 E-value=4.9e-74 Score=620.44 Aligned_cols=206 Identities=50% Similarity=0.947 Sum_probs=203.3
Q ss_pred CccCCCCceEEEEEEeeecCcCCCCCCCCCCcCCCccceeeeecCCCcccccCCCCCCHHHHHHHhcCChHHHHHHHHhc
Q psy17708 2 DCCACDEARYKFIFEGLWRNETHPKDFPKSLWLTHFSDVVGGTHGKNFSFWGEGQIASPGLKQLAEWGATRIIDSELRSK 81 (893)
Q Consensus 2 ~c~a~~~a~y~~~f~g~ws~~~~p~~~p~~~~~~~~s~~~g~~H~~~~~l~~~g~~As~gl~~~AE~G~~~~l~~e~~~~ 81 (893)
.||||++|||+|+|+|+||+++||||||.++|++|||++||++|+++|.||++|++|++||++|||+|.+..||.|+.++
T Consensus 123 ~C~a~~~AkY~~~f~g~WS~~t~PK~yP~~r~~t~~s~~lGasH~snys~w~~g~~at~G~rd~AE~G~t~~le~e~~a~ 202 (508)
T KOG3539|consen 123 TCCACDPAKYSLVFTGKWSRETHPKDYPGKRPRTRFSDALGASHSSNYSLWDIGQIATAGLRDFAESGSTMALESELKAP 202 (508)
T ss_pred ccccCChhheEEEEeeeecccCCccccCccchHHHHHHHhhhhcCCCcchhhcCcccchhhhhhhhcCcHHHHHHHHhCc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeEeeccccC-CCCCCceEEEEEEcCCCceEEEeeeccCCCCeEEEeCCcccccCCCcccccEEEEeecccCCCC
Q psy17708 82 SRHFRSLVKATGLWY-PGVNANTSSTFRVDKRRNLISLVSMLGPSPDWLVGVSGLNLCLPNCTWIEGQIIDLYPYDAGTD 160 (893)
Q Consensus 82 ~~~~~~~~~~~g~~~-p~~~~~~~~~~~v~~~~~~~S~~~m~~pSpDwfvG~~~~~lc~~~~~w~~~~~~~l~p~DAGTd 160 (893)
+..++++++..|+++ |.+++.+++.|+||++|++|||++||+||||||||||+||||+.+|+|+++++++|+|||||||
T Consensus 203 ~s~~rsv~~~~~~~yvP~~~g~tsa~~~Vd~~H~lvSlvt~~~PSPDW~vGv~sldLC~~~csW~e~~~~~L~P~DAGTD 282 (508)
T KOG3539|consen 203 GSALRSVIKVFGLPYVPNVTGDTSAKFRVDSNHSLVSLVTMIVPSPDWVVGVSSLDLCLGDCSWGEKKTHELYPWDAGTD 282 (508)
T ss_pred chhhhHHHHhhcCccccCCCCCcceEEEecCCcceEEEEEEecCCCceEEeechhhhccCCCcchhhceeeecccccCCC
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCccceeecccCCCCCCCCCCCCCCCCccCccccc
Q psy17708 161 NGVSYMSINIPAVPQEKIHKITPMYPEDERAPFYDPVNNFMYPLCDQ 207 (893)
Q Consensus 161 ~g~t~~s~~~~t~p~~~i~~it~~~p~~~~~~fy~~~~~~~~p~~~~ 207 (893)
||+||||||+||+||+.|++||+.+|+||++|||||....|+|+|++
T Consensus 283 sG~ty~spn~pteP~~~i~~ITs~~p~~P~s~FY~pks~~lpplAt~ 329 (508)
T KOG3539|consen 283 SGFTYMSPNSPTEPQDVIYRITSPYPLHPASPFYDPKSKCLPPLATV 329 (508)
T ss_pred CCccccCCCCCCCCCCCceEeccCCCCCCcccccCcccccCCchhhh
Confidence 99999999999999999999999999999999999999999999874
No 3
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=100.00 E-value=6.2e-66 Score=524.62 Aligned_cols=195 Identities=42% Similarity=0.774 Sum_probs=147.2
Q ss_pred CceEEEEEEeeecCcCCCCCCCCCCcCCCccceeeeecCCCcccccCCCCCCHHHHHHHhcCChHHHHHHHHhcccccce
Q psy17708 8 EARYKFIFEGLWRNETHPKDFPKSLWLTHFSDVVGGTHGKNFSFWGEGQIASPGLKQLAEWGATRIIDSELRSKSRHFRS 87 (893)
Q Consensus 8 ~a~y~~~f~g~ws~~~~p~~~p~~~~~~~~s~~~g~~H~~~~~l~~~g~~As~gl~~~AE~G~~~~l~~e~~~~~~~~~~ 87 (893)
||||+|||+|+||+++||||||.++|++|||+|||++|+++|+||++|++||+|||+|||+|+++.|++|+++++..+++
T Consensus 1 ~A~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpligasH~~~~~lf~~G~~AS~gle~lAE~G~~~~L~~e~~~~~~~~~~ 80 (196)
T PF06468_consen 1 TATYEVTFEGIWSRNTHPKDYPSNRPPAHFSPLIGASHNSDYTLFEYGEPASEGLERLAEDGDPSGLEAEIGSAGGNVRT 80 (196)
T ss_dssp EEEEEEEEEEE-STTTS-TT--CTSSCSEEEEEEEEEE-TT--S--TTS---HHHHHHHHH---HHHHHHHHHHHHHCCE
T ss_pred CceEEEEEEEEECCccCcccccccccccccchhhhhhccCcccccccCCcccHHHHHHHhcCCHHHHHHHHhhcccccce
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998777899
Q ss_pred eEeecc-ccCCCCCCceEEEEEEcCCCceEEEeeeccCCCCeEEEeCCcccccCCCcccccEEEEeecccCCCCcccccc
Q psy17708 88 LVKATG-LWYPGVNANTSSTFRVDKRRNLISLVSMLGPSPDWLVGVSGLNLCLPNCTWIEGQIIDLYPYDAGTDNGVSYM 166 (893)
Q Consensus 88 ~~~~~g-~~~p~~~~~~~~~~~v~~~~~~~S~~~m~~pSpDwfvG~~~~~lc~~~~~w~~~~~~~l~p~DAGTd~g~t~~ 166 (893)
++++.+ .++|.+.+.++++|+||++||+||||+||+|||||||||++++||+.+ +|+++++++|+|||||||+|++|+
T Consensus 81 v~~~~~~~~~~~~~~~t~~~f~vd~~~~~lS~~sMl~PSnDwFvGv~s~~L~~~~-~w~~~~t~~l~~yDAGTe~g~e~~ 159 (196)
T PF06468_consen 81 VIKAFGAPGPPPGTGSTSATFTVDRNHHLLSFASMLVPSNDWFVGVDSLELCDED-SWIDSVTINLYPYDAGTESGDEYT 159 (196)
T ss_dssp EEEEEEC--BTTTCEEEEEEEEEETTC-EEEEEEEEES-SSEEEEEEEEE-EETT-CE-SEEEEEE--EE-SSB---STT
T ss_pred eEeccCcccCCCCCCceeEEEEEcCCCCEEEEEEeecCCCCeeEeccccccccCC-CccceeEecccceeccccCCCcee
Confidence 999887 556788889999999999999999999999999999999999999977 999999999999999999999999
Q ss_pred cCCCCCCCccceeecccCCCCCCCCCCCCCCCCccCc
Q psy17708 167 SINIPAVPQEKIHKITPMYPEDERAPFYDPVNNFMYP 203 (893)
Q Consensus 167 s~~~~t~p~~~i~~it~~~p~~~~~~fy~~~~~~~~p 203 (893)
|||+|++|+++|++||+.+|+||++|||+|.+..|+|
T Consensus 160 s~~~~~~P~~~I~~it~~~p~~p~spFy~~~~~~~~p 196 (196)
T PF06468_consen 160 SPNSPTEPQQPIRRITSSYPNHPASPFYYPRGKPLPP 196 (196)
T ss_dssp ----B-SS----EE--TSSTSSTTSTT--TTSSS---
T ss_pred CCCCCCCCCcceEeccCCCCCCCCCCCcCCCCCcCCC
Confidence 9999999999999999999999999999999999987
No 4
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=100.00 E-value=1.1e-57 Score=464.23 Aligned_cols=194 Identities=42% Similarity=0.773 Sum_probs=147.6
Q ss_pred CceeEEEEeeeccCCCCCCCCCCcccccccccccccccCCCcccccCCCccChhhHHHHhcCchhhhHHHHHhcccccee
Q psy17708 300 EARYKFIFEGLWRNETHPKDFPKSLWLTHFSDVVGGTHGKNFSFWGEGQIASPGLKQLAEWGATRIIDSELRSKSRHFRS 379 (893)
Q Consensus 300 ~a~y~~~f~~~w~~~~~p~~~p~~~~~~~~s~~ig~sH~~~~~~w~~g~~as~g~~~~aE~G~~~~l~~e~~~~~~~~~~ 379 (893)
+|+|+|||+|+||+++||||||.++|.+|||+|||++|+++|+||++|++||+|||+|||+|++..|++|+++++..+++
T Consensus 1 ~A~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpligasH~~~~~lf~~G~~AS~gle~lAE~G~~~~L~~e~~~~~~~~~~ 80 (196)
T PF06468_consen 1 TATYEVTFEGIWSRNTHPKDYPSNRPPAHFSPLIGASHNSDYTLFEYGEPASEGLERLAEDGDPSGLEAEIGSAGGNVRT 80 (196)
T ss_dssp EEEEEEEEEEE-STTTS-TT--CTSSCSEEEEEEEEEE-TT--S--TTS---HHHHHHHHH---HHHHHHHHHHHHHCCE
T ss_pred CceEEEEEEEEECCccCcccccccccccccchhhhhhccCcccccccCCcccHHHHHHHhcCCHHHHHHHHhhcccccce
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred eeeccC-ccCCCCCCCcceeeeecccCceeeeeeeccCCCCcceecCCcccccCCCeeeeceEEeeccCCCCCCCCcCcc
Q psy17708 380 LVKATG-LWYPGVNANTSSTFRVDKRRNLISLVSMLGPSPDWLVGVSGLNLCLPNCTWIEGQVIDLYPYDAGTDNGVSYM 458 (893)
Q Consensus 380 ~~~~~~-~~~p~~~~~~~~~~~vd~~~~~~S~~~m~~pspDwfvGv~~~~lc~~~~~~~~~~~~~l~p~DaGtdsG~ty~ 458 (893)
++++.+ ..+|...+.+++.|+||++||+||||+||+|||||||||++++||..+ .|+++++++++|||||||+|.+|.
T Consensus 81 v~~~~~~~~~~~~~~~t~~~f~vd~~~~~lS~~sMl~PSnDwFvGv~s~~L~~~~-~w~~~~t~~l~~yDAGTe~g~e~~ 159 (196)
T PF06468_consen 81 VIKAFGAPGPPPGTGSTSATFTVDRNHHLLSFASMLVPSNDWFVGVDSLELCDED-SWIDSVTINLYPYDAGTESGDEYT 159 (196)
T ss_dssp EEEEEEC--BTTTCEEEEEEEEEETTC-EEEEEEEEES-SSEEEEEEEEE-EETT-CE-SEEEEEE--EE-SSB---STT
T ss_pred eEeccCcccCCCCCCceeEEEEEcCCCCEEEEEEeecCCCCeeEeccccccccCC-CccceeEecccceeccccCCCcee
Confidence 999887 456788899999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred cCCCCCCcccceeEecCCCCCCCCCCcccCcccccc
Q psy17708 459 SINIPAVPQEKIHKITPMYPEDERAPFYDPVSEMMD 494 (893)
Q Consensus 459 s~n~~~~p~~~I~~it~~~p~d~~spFy~p~~~~~~ 494 (893)
|+|++++|+++|++|++.+|+|+++|||+++++.|+
T Consensus 160 s~~~~~~P~~~I~~it~~~p~~p~spFy~~~~~~~~ 195 (196)
T PF06468_consen 160 SPNSPTEPQQPIRRITSSYPNHPASPFYYPRGKPLP 195 (196)
T ss_dssp ----B-SS----EE--TSSTSSTTSTT--TTSSS--
T ss_pred CCCCCCCCCcceEeccCCCCCCCCCCCcCCCCCcCC
Confidence 999999999999999999999999999999998875
No 5
>KOG4597|consensus
Probab=99.88 E-value=3.5e-22 Score=217.57 Aligned_cols=330 Identities=24% Similarity=0.443 Sum_probs=217.9
Q ss_pred CCCCCcCCCCCCeEEEEEeeecCCCCCcCccccccccccccccCCCCCCCCCcceeecccccCCccc--CCCCCCCcccC
Q psy17708 517 PWSNCSATCGKGLRMRSRTYVNPASARAAECDRQLVSKEMCIAENPTCPGEEEEEQVEGKECKVGEW--EAWSECSVSCG 594 (893)
Q Consensus 517 ~WS~CS~TCG~G~r~R~R~c~~~~~~~~~~C~~~~~e~~~C~~~~~~C~~~~~~~~c~~~~C~~s~W--s~WS~CS~tCG 594 (893)
.|..||.+||+|+|.|...|+..... ..++...|...+.+-+. .+..|..-+|+. +| +.|+.||.+||
T Consensus 150 n~t~cs~aCgKG~q~~iv~C~~~~t~-------~~~~~~~cettm~ptpe--~e~~c~l~~cpa-~w~vg~wetcS~tCg 219 (560)
T KOG4597|consen 150 NCTMCSEACGKGVQLRIVYCIHGKTW-------PRVSPDPCETTMAPTPE--FEPSCALVDCPA-EWFVGDWETCSSTCG 219 (560)
T ss_pred ceEehhhhhcCCceeeeEEEeccccC-------CCCCCCccccccCCCCC--CCCCcccccCcc-hhhcccchhhccccc
Confidence 39999999999999999999965321 12334444444444332 222255667775 78 99999999999
Q ss_pred -CCeEeeEEeecCCCCC------CCCCCC-CccceeeccCCCCCCCcCCCCCCCCcC---CcCCCCCcccCCceEEEEEE
Q psy17708 595 -QGLRTRVRRFPDKKTA------KKCPHV-ELVEREPCIESPCTESVVDPLCPVTDW---SDWSPCNASCGYGFKIHTRF 663 (893)
Q Consensus 595 -~G~r~R~r~C~~~~~~------~~C~~~-~~~e~~~C~~~~Cp~~~~~~~C~~s~W---S~WS~CS~tCG~G~q~R~R~ 663 (893)
.|.+.|.++|...... ..+... .++-+..|+..-|+ +| ..|+.||+-||.|+++|.+.
T Consensus 220 ~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~-----------ewq~~a~w~tCs~rcg~g~~~rdv~ 288 (560)
T KOG4597|consen 220 VQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICN-----------EWQADAGWYTCSARCGAGFLRRDVP 288 (560)
T ss_pred ccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcc-----------hhhcCCCceeeccccccceeeccce
Confidence 8999999999764321 123222 25556667766664 67 58999999999999999999
Q ss_pred EecCCCCCccccCcccccceeccCCCCCCcccccccccccccCCCCCCCCCCC----CcceeecCCCCcccCccCCCCCC
Q psy17708 664 LLADKQHEAECLQRVSLNETKRCKSPRGDCKVDMAEVKTTCMLPEDTGSCHSF----NERFRFEPMKGMCIPFSYGGCGG 739 (893)
Q Consensus 664 c~~~~~~~~~C~~~~~~~e~~~C~~~~~~C~~~~~~~~~~C~~~~~~g~C~~~----~~r~~~~p~~~~C~~f~y~GC~g 739 (893)
|......+.. .. ..+||-++..+...|.. ++.|+|.+. ..+|.++++.+.|..|...+|.+
T Consensus 289 c~s~~ge~a~-----da---------ads~p~~~~~~~~e~~~-cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~ 353 (560)
T KOG4597|consen 289 CSSVKGEGAL-----DA---------ADSCPADEQEKPAECLT-CDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKG 353 (560)
T ss_pred eeeecccccc-----cc---------cccCCcccccCchhhcC-CCCcccCCccchhhhhhhcccccCCceeeeeeeecC
Confidence 9865421111 01 23455556666666654 788899865 34578999999999999999999
Q ss_pred CCCCccccccccccccccccccc-CCCCC---CcccccccCccccccccccCCCCCCCCCCccccccccccc--------
Q psy17708 740 NKNNFYTQAECLDFCRPIINLLD-APSST---NNITNVDLGALVRMCIPFSYGGCGGNKNNFYTQAECLDFC-------- 807 (893)
Q Consensus 740 n~n~f~t~~~C~~~C~~~~~~~~-~~~~~---~~~~~~~~~~~~~~c~~~~~~wc~c~~~~~~~r~~c~~~C-------- 807 (893)
+.+.|++.+.|...|..+....+ .++.. +...+-.... |+...+.|+.+.++++.+-.+...|
T Consensus 354 s~~~~~p~E~C~~a~~sg~~pad~~pc~~GPC~~e~rW~~s~-----wsqCs~eCg~g~~~r~vica~~~a~~f~v~~p~ 428 (560)
T KOG4597|consen 354 SQGRFEPLEACLVACASGPRPADTRPCAQGPCPCEPRWAYSP-----WSQCSGECGGGGNNREVICACEQACPFEVVDPS 428 (560)
T ss_pred ccccccchhhhhhhccCCCCCccccccccCCCCCccceeecc-----hhhhccccCCCCcceeEEEeeecCCCcccCCcc
Confidence 99999999999999953332221 11111 1111111111 1111234444555666665554444
Q ss_pred --cCccCCCCCCCccCcccccCCccCCc--cCccccccccCCCeEEEEEEEEecCCCC-CCCCCC--CCcceeeCCCCCC
Q psy17708 808 --RPIINLLDAPSSTNNITNVDCVLGEW--GPWSECSVKCGRGYKMRTREVLVQAQGK-GTPCPL--VLTKRRMCRGVGC 880 (893)
Q Consensus 808 --~~~~~~~~~~~c~~~~CpvdC~~s~W--S~WS~CS~tCG~G~q~R~R~c~~~~~~g-G~~Cp~--~~~q~r~C~~~pC 880 (893)
.+..++.-.+.|+..+|- ..| ++||+|+.+||+|.|.|...|+.....+ -..|+. ++.+++.||..||
T Consensus 429 ~ca~~~r~~~~~s~~~~~c~-----~~w~sTewsec~~scgGgaqvr~~~cL~ddkm~L~~lc~~~Lkps~k~~cna~pC 503 (560)
T KOG4597|consen 429 CCACLPRPKLTQSCCRSDCT-----ITWRSTEWSECPASCGGGAQVRVVVCLKDDKMGLKFLCDEQLKPSEKQDCNACPC 503 (560)
T ss_pred cccccCCccccccccccccc-----eeeeecccccCchhcCCcceEeeeeecccCcccccccCccccChhhcCCCCCCCC
Confidence 233344444455555555 347 8899999999999999999999865333 344875 7899999999999
Q ss_pred CC---CCCCCCCCCC
Q psy17708 881 TE---PKTPIVPTRY 892 (893)
Q Consensus 881 ~~---~~~~~~~~~~ 892 (893)
+. .+.+.++.+|
T Consensus 504 p~~~dse~~~c~d~~ 518 (560)
T KOG4597|consen 504 PNCVDSEFPLCIDGS 518 (560)
T ss_pred CCcccCcCCccccCC
Confidence 82 2334555554
No 6
>KOG4597|consensus
Probab=99.53 E-value=5.6e-14 Score=154.12 Aligned_cols=276 Identities=23% Similarity=0.401 Sum_probs=169.7
Q ss_pred CCCC-ccccCCCCCCcCCCC-CCeEEEEEeeecCCCCCcCccccccccccccccCCCCCCCCCcceeecccccCCccc--
Q psy17708 508 PECA-VTPYTPWSNCSATCG-KGLRMRSRTYVNPASARAAECDRQLVSKEMCIAENPTCPGEEEEEQVEGKECKVGEW-- 583 (893)
Q Consensus 508 ~~C~-~s~Ws~WS~CS~TCG-~G~r~R~R~c~~~~~~~~~~C~~~~~e~~~C~~~~~~C~~~~~~~~c~~~~C~~s~W-- 583 (893)
.+|. .|.-+.|+.||.+|| .|.+.|.+.|......+. .++....++.... .....|+...|. +|
T Consensus 200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~-----~vv~~~nq~~e~p-----~vtstcql~ic~--ewq~ 267 (560)
T KOG4597|consen 200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRE-----NVVMRPNQTVENP-----VVTSTCQLVICN--EWQA 267 (560)
T ss_pred ccCcchhhcccchhhcccccccCCcCceeeeehhhcccc-----ceeecCccccCCc-----ceeeeeeEEEcc--hhhc
Confidence 4453 466789999999999 699999999975422111 1111111111110 111113333443 67
Q ss_pred -CCCCCCCcccCCCeEeeEEeecCCCC------CCCCCC---CCccceeeccCCCCCCCcCCCCCCCCcC--CcCC-CCC
Q psy17708 584 -EAWSECSVSCGQGLRTRVRRFPDKKT------AKKCPH---VELVEREPCIESPCTESVVDPLCPVTDW--SDWS-PCN 650 (893)
Q Consensus 584 -s~WS~CS~tCG~G~r~R~r~C~~~~~------~~~C~~---~~~~e~~~C~~~~Cp~~~~~~~C~~s~W--S~WS-~CS 650 (893)
.+|+.||+.||.|+++|.+.|....+ ...|+. .++.+...|++.||. ..| ++|+ .++
T Consensus 268 ~a~w~tCs~rcg~g~~~rdv~c~s~~ge~a~daads~p~~~~~~~~e~~~cdmgpC~----------g~~f~tew~~~~~ 337 (560)
T KOG4597|consen 268 DAGWYTCSARCGAGFLRRDVPCSSVKGEGALDAADSCPADEQEKPAECLTCDMGPCT----------GLTFVTEWSWHLD 337 (560)
T ss_pred CCCceeeccccccceeeccceeeeecccccccccccCCcccccCchhhcCCCCcccC----------Cccchhhhhhhcc
Confidence 58999999999999999999976433 123431 236677779999997 355 5887 689
Q ss_pred cccCCceEEEEEEEecCCC---CCccccCcccccceeccCCCCCCcccccccccccccCCCCCCCCCCCCcceeecCCCC
Q psy17708 651 ASCGYGFKIHTRFLLADKQ---HEAECLQRVSLNETKRCKSPRGDCKVDMAEVKTTCMLPEDTGSCHSFNERFRFEPMKG 727 (893)
Q Consensus 651 ~tCG~G~q~R~R~c~~~~~---~~~~C~~~~~~~e~~~C~~~~~~C~~~~~~~~~~C~~~~~~g~C~~~~~r~~~~p~~~ 727 (893)
+-||.|+++|.|.|..... ....|.. +|. ......|+.+...|+| ....||+|.+..
T Consensus 338 aqcg~~~~~rsv~C~~s~~~~~p~E~C~~---------------a~~---sg~~pad~~pc~~GPC-~~e~rW~~s~ws- 397 (560)
T KOG4597|consen 338 AQCGDCETTRSVVCKGSQGRFEPLEACLV---------------ACA---SGPRPADTRPCAQGPC-PCEPRWAYSPWS- 397 (560)
T ss_pred cccCCceeeeeeeecCccccccchhhhhh---------------hcc---CCCCCccccccccCCC-CCccceeecchh-
Confidence 9999999999999986542 1233321 110 0112234455667888 778899999987
Q ss_pred cccCccCCCCCCCCCCcccccccccccccccc-cccCCCCCCcccccccCccccccc--cccCCCCCCCCCC---ccccc
Q psy17708 728 MCIPFSYGGCGGNKNNFYTQAECLDFCRPIIN-LLDAPSSTNNITNVDLGALVRMCI--PFSYGGCGGNKNN---FYTQA 801 (893)
Q Consensus 728 ~C~~f~y~GC~gn~n~f~t~~~C~~~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~wc~c~~~~---~~~r~ 801 (893)
+|. ++|+++.|+|.....|.+.|...+. ....-...... .....-.+.|. .+.+.|+.|.+.+ ++.+.
T Consensus 398 qCs----~eCg~g~~~r~vica~~~a~~f~v~~p~~ca~~~r~~--~~~s~~~~~c~~~w~sTewsec~~scgGgaqvr~ 471 (560)
T KOG4597|consen 398 QCS----GECGGGGNNREVICACEQACPFEVVDPSCCACLPRPK--LTQSCCRSDCTITWRSTEWSECPASCGGGAQVRV 471 (560)
T ss_pred hhc----cccCCCCcceeEEEeeecCCCcccCCcccccccCCcc--ccccccccccceeeeecccccCchhcCCcceEee
Confidence 887 8999999999999999998886552 22100000000 00011112222 4458888887652 22221
Q ss_pred -ccc--------ccccCccCCCCCCCccCcccccCCccCC
Q psy17708 802 -ECL--------DFCRPIINLLDAPSSTNNITNVDCVLGE 832 (893)
Q Consensus 802 -~c~--------~~C~~~~~~~~~~~c~~~~CpvdC~~s~ 832 (893)
+|+ ..|.....+...+.|+..+|| +|+.|+
T Consensus 472 ~~cL~ddkm~L~~lc~~~Lkps~k~~cna~pCp-~~~dse 510 (560)
T KOG4597|consen 472 VVCLKDDKMGLKFLCDEQLKPSEKQDCNACPCP-NCVDSE 510 (560)
T ss_pred eeecccCcccccccCccccChhhcCCCCCCCCC-CcccCc
Confidence 222 245566677888899999998 444443
No 7
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=99.02 E-value=3.3e-10 Score=91.56 Aligned_cols=52 Identities=38% Similarity=0.799 Sum_probs=45.0
Q ss_pred cCCccCccccccccCCCeEEEEEEEEecC-CCCCCCCCCCCcceeeCCCCCCC
Q psy17708 830 LGEWGPWSECSVKCGRGYKMRTREVLVQA-QGKGTPCPLVLTKRRMCRGVGCT 881 (893)
Q Consensus 830 ~s~WS~WS~CS~tCG~G~q~R~R~c~~~~-~~gG~~Cp~~~~q~r~C~~~pC~ 881 (893)
|++|++||+||++||.|+|.|.|.|+..+ ..++..|++...+.+.|+..+|+
T Consensus 1 ~~~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~~~~~C~~~~C~ 53 (53)
T smart00209 1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53 (53)
T ss_pred CCCccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCCEEeecCCCCCc
Confidence 57899999999999999999999998754 34788999855599999999985
No 8
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=99.02 E-value=8.5e-11 Score=93.40 Aligned_cols=49 Identities=37% Similarity=0.782 Sum_probs=42.9
Q ss_pred CCccCccccccccCCCeEEEEEEEEecCCCCCCCCCCCCcceeeCCCCCC
Q psy17708 831 GEWGPWSECSVKCGRGYKMRTREVLVQAQGKGTPCPLVLTKRRMCRGVGC 880 (893)
Q Consensus 831 s~WS~WS~CS~tCG~G~q~R~R~c~~~~~~gG~~Cp~~~~q~r~C~~~pC 880 (893)
|+|++||+||++||.|+|+|+|.|+.. ..++..|++...+.+.|+.++|
T Consensus 1 s~Ws~Ws~CS~tCg~G~~~R~r~c~~~-~~~~~~C~~~~~~~~~C~~~~C 49 (49)
T PF00090_consen 1 SEWSEWSPCSATCGGGVQTRTRTCQSP-PDGGESCPGPDQETRPCNMQPC 49 (49)
T ss_dssp TSBSS--SSSSSSSSEEEEEEECSCTT-BTTSSTCHSCSEEEEEEECSSS
T ss_pred CccCcCCCCccccccCCceeEEEECcc-cCCCCCCCCCCcCcCccCcCcC
Confidence 579999999999999999999999887 6678899998888999999988
No 9
>KOG3538|consensus
Probab=98.97 E-value=1.9e-08 Score=125.64 Aligned_cols=58 Identities=33% Similarity=0.692 Sum_probs=50.3
Q ss_pred CCCCCccccCCCCCCcCCCCCCeEEEEEeeecCCCCCcC-ccccccccccccccCCCCCCC
Q psy17708 507 RPECAVTPYTPWSNCSATCGKGLRMRSRTYVNPASARAA-ECDRQLVSKEMCIAENPTCPG 566 (893)
Q Consensus 507 ~~~C~~s~Ws~WS~CS~TCG~G~r~R~R~c~~~~~~~~~-~C~~~~~e~~~C~~~~~~C~~ 566 (893)
+.++.|+.|++||+||+|||.|+++|.|.|.++.+.++. .|.+.....+.|+ ..+|+.
T Consensus 477 ~~dg~w~~w~~ws~Cs~TCg~Gv~~~~r~C~np~p~~gg~~C~g~~~~~~~c~--~~~C~~ 535 (845)
T KOG3538|consen 477 PFDGGWSSWSPWSPCSRTCGGGVQTRSRLCNNPRPANGGKYCPGERLRYRSCN--TEPCPP 535 (845)
T ss_pred CCCCCccccCCCCccccccCCceeeeeEECCCCCCCCCCccCCCCCceeeecC--CCCCCC
Confidence 457899999999999999999999999999999887544 7988877777776 678987
No 10
>PTZ00087 thrombosponding-related protein; Provisional
Probab=98.83 E-value=2e-09 Score=110.63 Aligned_cols=50 Identities=32% Similarity=0.731 Sum_probs=43.2
Q ss_pred CccCCccCccccccccC--CCeEEEEEEEEecCCCCCCCCC-CCCcceeeCCCC--CCC
Q psy17708 828 CVLGEWGPWSECSVKCG--RGYKMRTREVLVQAQGKGTPCP-LVLTKRRMCRGV--GCT 881 (893)
Q Consensus 828 C~~s~WS~WS~CS~tCG--~G~q~R~R~c~~~~~~gG~~Cp-~~~~q~r~C~~~--pC~ 881 (893)
-.||+||+||+||++|| +|+|+|+|.|..+ +| .|. |...|.+.|+.. ||+
T Consensus 231 ~~WSeWSeWS~CSkTCGgggGVQtRtRtCTNP---gG-dC~~G~s~ETr~CN~~cPPCp 285 (340)
T PTZ00087 231 MFYTEWGEWSNCSMECDHPDNVQIRERKCAHP---SG-DCFKGDLKETRPCQVPLPPCN 285 (340)
T ss_pred CCCCCCCCCCCcCcccCCCCCeEeEEEeCCCC---CC-CCCCCchhhcccccCCCCCCC
Confidence 47999999999999999 6999999999765 34 895 888999999975 774
No 11
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=98.73 E-value=1.5e-08 Score=81.86 Aligned_cols=50 Identities=38% Similarity=0.871 Sum_probs=41.6
Q ss_pred CcccCCCCCCCcccCCCeEeeEEeecCCC---CCCCCCCCCccceeeccCCCCC
Q psy17708 580 VGEWEAWSECSVSCGQGLRTRVRRFPDKK---TAKKCPHVELVEREPCIESPCT 630 (893)
Q Consensus 580 ~s~Ws~WS~CS~tCG~G~r~R~r~C~~~~---~~~~C~~~~~~e~~~C~~~~Cp 630 (893)
++.|++||+||++||.|+|.|.|.|.... ++..|.+... +.+.|+..+|+
T Consensus 1 ~~~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~-~~~~C~~~~C~ 53 (53)
T smart00209 1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDV-ETRACNEQPCP 53 (53)
T ss_pred CCCccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCC-EEeecCCCCCc
Confidence 46899999999999999999999998643 5678876533 88999988885
No 12
>KOG3538|consensus
Probab=98.73 E-value=3e-07 Score=114.95 Aligned_cols=56 Identities=30% Similarity=0.689 Sum_probs=48.6
Q ss_pred ccccCCcccCCCCCCCcccCCCeEeeEEeecCC---CCCCCCCCCCccceeeccCCCCCC
Q psy17708 575 GKECKVGEWEAWSECSVSCGQGLRTRVRRFPDK---KTAKKCPHVELVEREPCIESPCTE 631 (893)
Q Consensus 575 ~~~C~~s~Ws~WS~CS~tCG~G~r~R~r~C~~~---~~~~~C~~~~~~e~~~C~~~~Cp~ 631 (893)
..++.|+.|++||+||+|||.|+++|.|.|.++ .+++.|.+. ....+.|+..+|+.
T Consensus 477 ~~dg~w~~w~~ws~Cs~TCg~Gv~~~~r~C~np~p~~gg~~C~g~-~~~~~~c~~~~C~~ 535 (845)
T KOG3538|consen 477 PFDGGWSSWSPWSPCSRTCGGGVQTRSRLCNNPRPANGGKYCPGE-RLRYRSCNTEPCPP 535 (845)
T ss_pred CCCCCccccCCCCccccccCCceeeeeEECCCCCCCCCCccCCCC-CceeeecCCCCCCC
Confidence 346789999999999999999999999999875 356789876 77889999999997
No 13
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=98.72 E-value=1.1e-08 Score=81.18 Aligned_cols=48 Identities=40% Similarity=0.945 Sum_probs=39.0
Q ss_pred cccCCCCCCCcccCCCeEeeEEeecCC-CCCCCCCCCCccceeeccCCCC
Q psy17708 581 GEWEAWSECSVSCGQGLRTRVRRFPDK-KTAKKCPHVELVEREPCIESPC 629 (893)
Q Consensus 581 s~Ws~WS~CS~tCG~G~r~R~r~C~~~-~~~~~C~~~~~~e~~~C~~~~C 629 (893)
++|++||+||++||.|+|+|.|.|... .++..|.+. ..+.+.|+..+|
T Consensus 1 s~Ws~Ws~CS~tCg~G~~~R~r~c~~~~~~~~~C~~~-~~~~~~C~~~~C 49 (49)
T PF00090_consen 1 SEWSEWSPCSATCGGGVQTRTRTCQSPPDGGESCPGP-DQETRPCNMQPC 49 (49)
T ss_dssp TSBSS--SSSSSSSSEEEEEEECSCTTBTTSSTCHSC-SEEEEEEECSSS
T ss_pred CccCcCCCCccccccCCceeEEEECcccCCCCCCCCC-CcCcCccCcCcC
Confidence 479999999999999999999999986 567778763 556899988876
No 14
>PF02014 Reeler: Reeler domain Schematic picture including Reeler domain; InterPro: IPR002861 Extracellular matrix (ECM) proteins play an important role in early cortical development, specifically in the formation of neural connections and in controlling the cyto-architecture of the central nervous system. The product of the reeler gene in mouse is reelin,a large extracellular protein secreted by pioneer neurons that coordinates cell positioning during neurodevelopment []. F-spondin and mindin are a family of matrix-attached adhesion molecules that share structural similarities and overlapping domains of expression. Both F-spondin and mindin promote adhesion and outgrowth of hippocampal embryonic neurons and bind to a putative receptor(s) expressed on both hippocampal and sensory neurons []. This domain of unknown function is found at the N terminus of reelin and F-spondin.; PDB: 2ZOT_B 2ZOU_B 3COO_A.
Probab=98.59 E-value=4.5e-08 Score=94.92 Aligned_cols=63 Identities=35% Similarity=0.579 Sum_probs=51.2
Q ss_pred CCCceEecCCCCcccccccc----cchhhhcccCccceEEEEEeCCCCCCCceEEeeeeeeccce-ecC
Q psy17708 210 SPGSLQLLPNDQLTEFDDDC----TNTISEANTTLKTQVQVMWLAPPTGNGCVRIKANVLANNQL-YGD 273 (893)
Q Consensus 210 ~~G~f~l~~~~~~~~~~~~c----~~~~~~~~~~~k~~~~~~w~ap~~~~~c~~~~a~v~~~~~~-~~~ 273 (893)
.+|+|++++ +..++...+| .++|+|++..+|++|+|.|+||....|||.|||+|+++.++ |.|
T Consensus 65 ~vG~f~~~~-~~~~~~~~~C~~~~~~avTH~~~~~K~~v~~~W~AP~~~~g~V~fraTvv~~~~~~w~~ 132 (132)
T PF02014_consen 65 PVGTFQLPP-DSDTTQLLDCSGGDNNAVTHSNNSPKTSVTFTWTAPADFSGCVTFRATVVQSYDTFWVD 132 (132)
T ss_dssp BSSEEEES--TTTEEEETTE----EEEEEESS-S-BSEEEEEEE--STTS-EEEEEEEEESSSCEEE-S
T ss_pred cccccCcCC-cccceEeecccccccceEEecCCCCccEEEEEEcCCCCCCceEEEEEEEEEeCcEEecC
Confidence 489999997 7667788999 79999999999999999999999999999999999999988 543
No 15
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=98.58 E-value=6.2e-08 Score=94.33 Aligned_cols=72 Identities=33% Similarity=0.680 Sum_probs=63.0
Q ss_pred CCCCCceEecCCCCccccccccc--chhhhcccCccceEEEEEeCCCCCCCceEEeeeeeeccce-ecCcCccchhhh
Q psy17708 208 SSSPGSLQLLPNDQLTEFDDDCT--NTISEANTTLKTQVQVMWLAPPTGNGCVRIKANVLANNQL-YGDSGKLTREIC 282 (893)
Q Consensus 208 ~~~~G~f~l~~~~~~~~~~~~c~--~~~~~~~~~~k~~~~~~w~ap~~~~~c~~~~a~v~~~~~~-~~~~~~l~~~~c 282 (893)
...+|+|++.+ +..+++.+.|. ++|+|++...|++|+|.|+||..++|||.|+|+|++..++ |.+ .+++.+|
T Consensus 61 ~~~vG~f~~~~-~~~tk~~~c~~~~~avtH~~~~~k~~v~~~W~AP~~~~g~V~F~aTvv~~~~~~w~~--~~s~~l~ 135 (135)
T cd08544 61 NEPVGTFQLPP-DSGTKLLTCCGSDNAVTHSNNSKKTSVTFTWTAPSNGSGCVTFRATVVQSYDVFWVD--VLSKTLC 135 (135)
T ss_pred CcceEEEEeCC-CcccEEecCCCCCCcceeCCCCCCceeEEEEECCCCCCccEEEEEEEEEecCEEEec--ccccccC
Confidence 35789999998 67899999887 9999999999999999999999999999999999999988 655 5555443
No 16
>PTZ00087 thrombosponding-related protein; Provisional
Probab=98.50 E-value=9.9e-08 Score=98.43 Aligned_cols=51 Identities=31% Similarity=0.776 Sum_probs=41.4
Q ss_pred cCCcccCCCCCCCcccC--CCeEeeEEeecCCCCCCCCCCCCccceeeccCC--CCC
Q psy17708 578 CKVGEWEAWSECSVSCG--QGLRTRVRRFPDKKTAKKCPHVELVEREPCIES--PCT 630 (893)
Q Consensus 578 C~~s~Ws~WS~CS~tCG--~G~r~R~r~C~~~~~~~~C~~~~~~e~~~C~~~--~Cp 630 (893)
-.|++||+||+||++|| +|+|+|+|.|.++. + .|......|++.|+.. ||+
T Consensus 231 ~~WSeWSeWS~CSkTCGgggGVQtRtRtCTNPg-G-dC~~G~s~ETr~CN~~cPPCp 285 (340)
T PTZ00087 231 MFYTEWGEWSNCSMECDHPDNVQIRERKCAHPS-G-DCFKGDLKETRPCQVPLPPCN 285 (340)
T ss_pred CCCCCCCCCCCcCcccCCCCCeEeEEEeCCCCC-C-CCCCCchhhcccccCCCCCCC
Confidence 36899999999999999 69999999998874 3 6842346789999974 554
No 17
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=98.31 E-value=4e-07 Score=73.72 Aligned_cols=52 Identities=50% Similarity=1.143 Sum_probs=48.9
Q ss_pred cccCCCCCCCCCCCCcceeecCCCCcccCccCCCCCCCCCCccccccccccc
Q psy17708 703 TCMLPEDTGSCHSFNERFRFEPMKGMCIPFSYGGCGGNKNNFYTQAECLDFC 754 (893)
Q Consensus 703 ~C~~~~~~g~C~~~~~r~~~~p~~~~C~~f~y~GC~gn~n~f~t~~~C~~~C 754 (893)
+|.++++.|.|.....+|+|++..+.|..|.|+||.++.|.|.+.++|.++|
T Consensus 2 ~C~~~~~~g~c~~~~~~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 2 VCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred cccCCCCCCCCCCCeeEEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 5778888899999999999999999999999999999999999999999887
No 18
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=98.30 E-value=4.8e-07 Score=73.58 Aligned_cols=53 Identities=47% Similarity=1.097 Sum_probs=49.5
Q ss_pred cccCCCCCCCCCCCCcceeecCCCCcccCccCCCCCCCCCCcccccccccccc
Q psy17708 703 TCMLPEDTGSCHSFNERFRFEPMKGMCIPFSYGGCGGNKNNFYTQAECLDFCR 755 (893)
Q Consensus 703 ~C~~~~~~g~C~~~~~r~~~~p~~~~C~~f~y~GC~gn~n~f~t~~~C~~~C~ 755 (893)
+|.++++.+.|.....+|+|++..+.|..|.|+||.++.|.|.+.++|.+.|.
T Consensus 2 ~C~~~~~~g~C~~~~~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C~ 54 (54)
T cd00109 2 VCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54 (54)
T ss_pred cccCCCCCCCCCCCccEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhcc
Confidence 57788888999999999999999999999999999999999999999999884
No 19
>PF00014 Kunitz_BPTI: Kunitz/Bovine pancreatic trypsin inhibitor domain; InterPro: IPR002223 The majority of the sequences having this domain belong to the MEROPS inhibitor family I2, clan IB; the Kunitz/bovine pancreatic trypsin inhibitor family, they inhibit proteases of the S1 family [] and are restricted to the metazoa with a single exception: Amsacta moorei entomopoxvirus. They are short (~50 residue) alpha/beta proteins with few secondary structures. The fold is constrained by 3 disulphide bonds. The type example for this family is aprotinin (bovine pancreatic trypsin inhibitor) [] (or basic protease inhibitor), but the family includes numerous other members [, , , ], such as snake venom basic protease; mammalian inter-alpha-trypsin inhibitors; trypstatin, a rodent mast cell inhibitor of trypsin; a domain found in an alternatively-spliced form of Alzheimer's amyloid beta-protein; domains at the C-termini of the alpha(1) and alpha(3) chains of type VII and type VI collagens; and tissue factor pathway inhibitor precursor.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1YC0_I 4DTG_K 1TFX_D 1ADZ_A 1BF0_A 3OFW_A 1SHP_A 3M7Q_B 3GYM_J 1BHC_G ....
Probab=98.17 E-value=8e-07 Score=71.78 Aligned_cols=53 Identities=47% Similarity=1.072 Sum_probs=49.4
Q ss_pred cccCCCCCCCCCCCCcceeecCCCCcccCccCCCCCCCCCCcccccccccccc
Q psy17708 703 TCMLPEDTGSCHSFNERFRFEPMKGMCIPFSYGGCGGNKNNFYTQAECLDFCR 755 (893)
Q Consensus 703 ~C~~~~~~g~C~~~~~r~~~~p~~~~C~~f~y~GC~gn~n~f~t~~~C~~~C~ 755 (893)
.|.++++.+.|.+...+|+|++..+.|..|.|.||.++.|+|.+.++|.++|.
T Consensus 1 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~~c~~~~N~F~t~~~C~~~C~ 53 (53)
T PF00014_consen 1 VCLLPPDEGPCSGNEPRWYYNPSTGRCEQFWYGGCGGNENNFPTEEECQKTCG 53 (53)
T ss_dssp GGGSTCTCTSSSSCEEEEEEETTTTEEEEEEECSSSSSSSCBSSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCCccEEEEeCCCCcEEEeEccccCCCCcCCCCHHHHHHHcC
Confidence 37778888999999999999999999999999999999999999999999884
No 20
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=98.05 E-value=3.1e-06 Score=98.58 Aligned_cols=43 Identities=35% Similarity=0.894 Sum_probs=37.4
Q ss_pred CCccCccccccccCCCeEEEEEEEEecCCCCCCCCCCCCcceeeCCCCCCC
Q psy17708 831 GEWGPWSECSVKCGRGYKMRTREVLVQAQGKGTPCPLVLTKRRMCRGVGCT 881 (893)
Q Consensus 831 s~WS~WS~CS~tCG~G~q~R~R~c~~~~~~gG~~Cp~~~~q~r~C~~~pC~ 881 (893)
+.||+||+||+|||.|+|+|+|.|.. + .|.+. ..+.|+++.|+
T Consensus 241 ~~Ws~Ws~Cs~tCg~G~~~R~R~~~~----~--~C~~~--~~~~C~~~~Cp 283 (576)
T PTZ00441 241 GPWDEWTPCSVTCGKGTHSRSRPILH----E--GCTTH--MVEECEEEECP 283 (576)
T ss_pred CCCCCCCCCccccCCCceeeeecccC----C--CCcch--hhhccccCCCC
Confidence 68999999999999999999999963 2 48764 37899999998
No 21
>KOG1480|consensus
Probab=97.97 E-value=4.8e-06 Score=97.41 Aligned_cols=59 Identities=31% Similarity=0.557 Sum_probs=49.3
Q ss_pred CcccccCCccCCccCccccccccCCCeEEEEEEEEe-cCCCCCCCCCCCCcceeeCCCCCCCC
Q psy17708 821 NNITNVDCVLGEWGPWSECSVKCGRGYKMRTREVLV-QAQGKGTPCPLVLTKRRMCRGVGCTE 882 (893)
Q Consensus 821 ~~~CpvdC~~s~WS~WS~CS~tCG~G~q~R~R~c~~-~~~~gG~~Cp~~~~q~r~C~~~pC~~ 882 (893)
...||+|..|+.|+.|+.|+-.| ...|+|.|.. +|.+||++|-+.-.+...|...-|..
T Consensus 271 ~~~c~~dg~w~~ws~ws~c~~~c---~~~r~r~ct~p~p~ngg~~c~g~~~~s~~c~~glc~~ 330 (909)
T KOG1480|consen 271 TVLCPVDGGWSSWSDWSACSSEC---HHYRTRECTAPPPMNGGKPCFGLDLMSQNCTDGLCTA 330 (909)
T ss_pred cccccccCceeehhhhhhccCcc---ccceeeeeccCCcccCCccccCccccCCCCccccccc
Confidence 56789999999999999999888 4567788887 48999999998878888887776654
No 22
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.61 E-value=4.4e-05 Score=89.15 Aligned_cols=48 Identities=38% Similarity=0.913 Sum_probs=36.3
Q ss_pred CCCCCccccCCCCCCcCCCCCCeEEEEEeeecCCCCCcCccccccccccccccCCCCCCC
Q psy17708 507 RPECAVTPYTPWSNCSATCGKGLRMRSRTYVNPASARAAECDRQLVSKEMCIAENPTCPG 566 (893)
Q Consensus 507 ~~~C~~s~Ws~WS~CS~TCG~G~r~R~R~c~~~~~~~~~~C~~~~~e~~~C~~~~~~C~~ 566 (893)
...| ++|++||+||+|||.|+|+|+|.|+.. .|.+.+ .+.|. ...|+.
T Consensus 237 ~a~c--~~Ws~Ws~Cs~tCg~G~~~R~R~~~~~------~C~~~~--~~~C~--~~~Cp~ 284 (576)
T PTZ00441 237 TASC--GPWDEWTPCSVTCGKGTHSRSRPILHE------GCTTHM--VEECE--EEECPV 284 (576)
T ss_pred cccC--CCCCCCCCCccccCCCceeeeecccCC------CCcchh--hhccc--cCCCCC
Confidence 3567 589999999999999999999999742 375543 45564 456665
No 23
>KOG4295|consensus
Probab=97.06 E-value=0.00028 Score=77.69 Aligned_cols=62 Identities=39% Similarity=0.823 Sum_probs=55.0
Q ss_pred ccccccCCCCCCCCC---CCCcceeecCCCCcccCccCCCCCCCCCCcccccccccccccccccc
Q psy17708 700 VKTTCMLPEDTGSCH---SFNERFRFEPMKGMCIPFSYGGCGGNKNNFYTQAECLDFCRPIINLL 761 (893)
Q Consensus 700 ~~~~C~~~~~~g~C~---~~~~r~~~~p~~~~C~~f~y~GC~gn~n~f~t~~~C~~~C~~~~~~~ 761 (893)
...+|.++.+.|.|. ....||||++....|..|.|+||+||.|+|.+.++|...|.......
T Consensus 75 ~~~~C~~~~~~g~~~~~~~~~~r~~~d~~t~~C~~F~y~GC~gN~N~F~s~~~C~~~C~~~~~~~ 139 (295)
T KOG4295|consen 75 KNEICDQPKDVGLCCCCGTGSPRYYFDPKTKTCQPFIYGGCGGNSNNFLSSEECERACGSADQPS 139 (295)
T ss_pred CCcccCCchhhcccccCCCceeeeEEcCCCCeEeeeeecCcCCCcCcccCHHHHHHHhcCCCccC
Confidence 456778888888887 68999999999999999999999999999999999999999766544
No 24
>KOG1480|consensus
Probab=97.01 E-value=0.00058 Score=80.56 Aligned_cols=93 Identities=32% Similarity=0.682 Sum_probs=68.6
Q ss_pred CCCCccccCCCCCCcCCCCCCeEEEEEeeecCCCCCc-CccccccccccccccCCCCCCCCCcceeecccccCCcccCCC
Q psy17708 508 PECAVTPYTPWSNCSATCGKGLRMRSRTYVNPASARA-AECDRQLVSKEMCIAENPTCPGEEEEEQVEGKECKVGEWEAW 586 (893)
Q Consensus 508 ~~C~~s~Ws~WS~CS~TCG~G~r~R~R~c~~~~~~~~-~~C~~~~~e~~~C~~~~~~C~~~~~~~~c~~~~C~~s~Ws~W 586 (893)
....|++|.+|+-|-+-||.|.+.|.|.|.++++-++ ..|.++.+.+..|. ..|+. .-.|..|+.|
T Consensus 220 v~ggwsswt~w~~c~~rc~~~~q~rtrtc~npApln~G~~c~g~s~~~~~c~---~~c~~----------dg~w~~ws~w 286 (909)
T KOG1480|consen 220 VNGGWSEWTEWSTCNVRCGRGHQKRTRTCTNPAPLNGGAFCEGESVQKISCT---VLCPV----------DGGWSSWSDW 286 (909)
T ss_pred EcCcccccccceeeeecccccccccCCCCCCccccCCcccccccccccccCc---ccccc----------cCceeehhhh
Confidence 3466899999999999999999999999999876554 47877766666664 23442 2257789999
Q ss_pred CCCCcccCCCeEeeEEeecCC---CCCCCCCCC
Q psy17708 587 SECSVSCGQGLRTRVRRFPDK---KTAKKCPHV 616 (893)
Q Consensus 587 S~CS~tCG~G~r~R~r~C~~~---~~~~~C~~~ 616 (893)
+.|+..|- .-|+|.|..+ .+++.|.+.
T Consensus 287 s~c~~~c~---~~r~r~ct~p~p~ngg~~c~g~ 316 (909)
T KOG1480|consen 287 SACSSECH---HYRTRECTAPPPMNGGKPCFGL 316 (909)
T ss_pred hhccCccc---cceeeeeccCCcccCCccccCc
Confidence 99999884 4566777643 345666543
No 25
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=95.35 E-value=0.049 Score=51.94 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=75.1
Q ss_pred ccCCCCcccccccCCCC-CCCccceeecccCCCCCCCCCCCCCCCCccCcccccCCCCCceEecCC-CCccccccc---c
Q psy17708 155 YDAGTDNGVSYMSINIP-AVPQEKIHKITPMYPEDERAPFYDPVNNFMYPLCDQSSSPGSLQLLPN-DQLTEFDDD---C 229 (893)
Q Consensus 155 ~DAGTd~g~t~~s~~~~-t~p~~~i~~it~~~p~~~~~~fy~~~~~~~~p~~~~~~~~G~f~l~~~-~~~~~~~~~---c 229 (893)
+.+|+-.=+||..||-- +.+- ++++-..|.+- .+. +..+++.+++.+. +..+++.++ |
T Consensus 9 ~~~Gs~~~vtf~Vp~e~~~a~t---tk~~v~lp~~~-------~~~-------~~~pv~~~~~~p~pgw~~~v~k~~~~~ 71 (124)
T cd08523 9 VQVGTNLEVTLSIDEPVNFAPE---IEFTVNLKSNS-------DLF-------EEFHATAHNIDPSCDHGTMIDKNDIMR 71 (124)
T ss_pred ccCCceEEEEEECCCCccCcce---EEEEEEcCCCc-------ccc-------ccceeeEEEeecCCCceEEEEecccCc
Confidence 56899999999888843 2222 45555555541 111 2234666777661 477777776 8
Q ss_pred cchhhhcccCccceEEEEEeCCCCCCCceEEeeeeeec-cce--ecCcCccch
Q psy17708 230 TNTISEANTTLKTQVQVMWLAPPTGNGCVRIKANVLAN-NQL--YGDSGKLTR 279 (893)
Q Consensus 230 ~~~~~~~~~~~k~~~~~~w~ap~~~~~c~~~~a~v~~~-~~~--~~~~~~l~~ 279 (893)
..+|+.+.....++++|+|.||+. .|||.|+|+.... ..| |.|.|.|+|
T Consensus 72 ~vsVTWtapgqf~~f~vs~~~~P~-~~~v~~~A~Qty~dg~vv~w~~~g~~~~ 123 (124)
T cd08523 72 RVSVTWKAPSQEVRAKVSLRAEPK-AEHVYLSASSEKGDHRIAGTQDEGSGEK 123 (124)
T ss_pred ceEEEEcCCCceEEEEEEeecCCC-CCEEEEEEEEEEeCCEEEEEEecCCccC
Confidence 888888877778899999999995 8999999998444 454 999998875
No 26
>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors. These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.
Probab=49.55 E-value=11 Score=31.74 Aligned_cols=45 Identities=29% Similarity=0.629 Sum_probs=12.5
Q ss_pred ccCCcccCCCCCCCcccCCCeEeeEEeecCCCCCCCCCCCCccceeecc
Q psy17708 577 ECKVGEWEAWSECSVSCGQGLRTRVRRFPDKKTAKKCPHVELVEREPCI 625 (893)
Q Consensus 577 ~C~~s~Ws~WS~CS~tCG~G~r~R~r~C~~~~~~~~C~~~~~~e~~~C~ 625 (893)
.|.+ .+++||+|... .|+++|+...........|... ...+.+|.
T Consensus 3 ~CrY-~kg~W~eCd~~--T~~rtRt~~LKk~~~~a~C~~t-~titK~C~ 47 (63)
T PF01091_consen 3 DCRY-EKGAWSECDAT--TNTRTRTDTLKKALSDASCEPT-RTITKPCK 47 (63)
T ss_dssp -----EE----SS-SS--SSS----EE----SSSSS--SS-S-------
T ss_pred cccc-ccCCcccCcCc--CCeEEeeeeecccccCCCCccc-eEEecccC
Confidence 3554 77999999763 5788888877665456677643 33344454
No 27
>PF01091 PTN_MK_C: PTN/MK heparin-binding protein family, C-terminal domain; InterPro: IPR020090 Several extracellular heparin-binding proteins involved in regulation of growth and differentiation belong to a new family of growth factors. These growth factors are highly related proteins of about 140 amino acids that contain 10 conserved cysteines probably involved in disulphide bonds, and include pleiotrophin [] (also known as heparin-binding growth-associated molecule HB-GAM, heparin-binding growth factor 8 HBGF-8, heparin-binding neutrophic factor HBNF and osteoblast specific protein OSF-1); midkine (MK) []; retinoic acid-induced heparin-binding protein (RIHB) []; and pleiotrophic factors alpha-1and -2 and beta-1 and -2 from Xenopus laevis, the homologs of midkine and pleiotrophin respectively. Pleiotrophin is a heparin-binding protein that has neurotrophic activity and has mitogenic activity towards fibroblasts. It is highly expressed in brain and uterus tissues, but is also found in gut, muscle and skin. It is thought to possess an important brain-specific function. Midkine is a regulator of differentiation whose expression is regulated by retinoic acid, and, like pleiotrophin, is a heparin-binding growth/differentiation factor that acts on fibroblasts and nerve cells.; GO: 0008083 growth factor activity; PDB: 1MKC_A.
Probab=48.09 E-value=11 Score=31.63 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=12.0
Q ss_pred CccCccccccccCCCeEEEEEEEEecCCCCCCCCCCCCcceeeCCC
Q psy17708 832 EWGPWSECSVKCGRGYKMRTREVLVQAQGKGTPCPLVLTKRRMCRG 877 (893)
Q Consensus 832 ~WS~WS~CS~tCG~G~q~R~R~c~~~~~~gG~~Cp~~~~q~r~C~~ 877 (893)
++++||+|... .|.++|+-.... +. ....|....+..++|+.
T Consensus 7 ~kg~W~eCd~~--T~~rtRt~~LKk-~~-~~a~C~~t~titK~C~~ 48 (63)
T PF01091_consen 7 EKGAWSECDAT--TNTRTRTDTLKK-AL-SDASCEPTRTITKPCKK 48 (63)
T ss_dssp EE----SS-SS--SSS----EE-----S-SSSS--SSS--------
T ss_pred ccCCcccCcCc--CCeEEeeeeecc-cc-cCCCCccceEEecccCC
Confidence 46899999974 677888766543 21 24578876677777764
No 28
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=23.37 E-value=33 Score=27.29 Aligned_cols=36 Identities=44% Similarity=0.921 Sum_probs=29.0
Q ss_pred ccccCccccccccccCCCCCCCCCCccccccccccc
Q psy17708 772 NVDLGALVRMCIPFSYGGCGGNKNNFYTQAECLDFC 807 (893)
Q Consensus 772 ~~~~~~~~~~c~~~~~~wc~c~~~~~~~r~~c~~~C 807 (893)
+..++..+..|..+++.+|..+.|.|.+..+|...|
T Consensus 18 ~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 18 RYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred EEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 445666778899999999998999999988877654
No 29
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=20.36 E-value=45 Score=26.62 Aligned_cols=37 Identities=49% Similarity=1.000 Sum_probs=29.8
Q ss_pred cccccCccccccccccCCCCCCCCCCccccccccccc
Q psy17708 771 TNVDLGALVRMCIPFSYGGCGGNKNNFYTQAECLDFC 807 (893)
Q Consensus 771 ~~~~~~~~~~~c~~~~~~wc~c~~~~~~~r~~c~~~C 807 (893)
.+..++..+..|..+.+++|..+.|.|.+..+|...|
T Consensus 17 ~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C 53 (54)
T cd00109 17 PRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTC 53 (54)
T ss_pred cEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhc
Confidence 3455666778899888888988899999998887766
Done!