RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17708
(893 letters)
>gnl|CDD|219042 pfam06468, Spond_N, Spondin_N. This conserved region is found at
the in the N-terminal half of several Spondin proteins.
Spondins are involved in patterning axonal growth
trajectory through either inhibiting or promoting
adhesion of embryonic nerve cells.
Length = 197
Score = 281 bits (721), Expect = 2e-89
Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 1/195 (0%)
Query: 300 EARYKFIFEGLWRNETHPKDFPKSLWLTHFSDVVGGTHGKNFSFWGEGQIASPGLKQLAE 359
EA+Y+ FEG W ETHPKD+P TH+S V+G TH ++ W G+ AS G+K+ AE
Sbjct: 1 EAKYELTFEGKWSRETHPKDYPLYRPPTHWSKVIGATHSSDYRLWEYGEYASEGVKEFAE 60
Query: 360 WGATRIIDSELRSKSRHFRSLVKATG-LWYPGVNANTSSTFRVDKRRNLISLVSMLGPSP 418
G+T ++SE+ ++ R+++KA G YP TS+ F VD R +L+S V+M+ PSP
Sbjct: 61 HGSTDTLESEIEAQGEKIRTVIKAFGAPAYPNGTGATSAEFEVDSRHHLVSFVAMIVPSP 120
Query: 419 DWLVGVSGLNLCLPNCTWIEGQVIDLYPYDAGTDNGVSYMSINIPAVPQEKIHKITPMYP 478
DW VGV GL+LC +CTW+E +DLYP+DAGTD+G +Y S N P +PQEKI +IT YP
Sbjct: 121 DWFVGVDGLDLCTGDCTWVETVTLDLYPWDAGTDSGFTYSSPNFPTIPQEKIRRITSSYP 180
Query: 479 EDERAPFYDPVSEMM 493
+PFYDP + +
Sbjct: 181 SHPASPFYDPRGKEL 195
Score = 281 bits (721), Expect = 2e-89
Identities = 94/197 (47%), Positives = 129/197 (65%), Gaps = 1/197 (0%)
Query: 8 EARYKFIFEGLWRNETHPKDFPKSLWLTHFSDVVGGTHGKNFSFWGEGQIASPGLKQLAE 67
EA+Y+ FEG W ETHPKD+P TH+S V+G TH ++ W G+ AS G+K+ AE
Sbjct: 1 EAKYELTFEGKWSRETHPKDYPLYRPPTHWSKVIGATHSSDYRLWEYGEYASEGVKEFAE 60
Query: 68 WGATRIIDSELRSKSRHFRSLVKATG-LWYPGVNANTSSTFRVDKRRNLISLVSMLGPSP 126
G+T ++SE+ ++ R+++KA G YP TS+ F VD R +L+S V+M+ PSP
Sbjct: 61 HGSTDTLESEIEAQGEKIRTVIKAFGAPAYPNGTGATSAEFEVDSRHHLVSFVAMIVPSP 120
Query: 127 DWLVGVSGLNLCLPNCTWIEGQIIDLYPYDAGTDNGVSYMSINIPAVPQEKIHKITPMYP 186
DW VGV GL+LC +CTW+E +DLYP+DAGTD+G +Y S N P +PQEKI +IT YP
Sbjct: 121 DWFVGVDGLDLCTGDCTWVETVTLDLYPWDAGTDSGFTYSSPNFPTIPQEKIRRITSSYP 180
Query: 187 EDERAPFYDPVNNFMYP 203
+PFYDP + P
Sbjct: 181 SHPASPFYDPRGKELPP 197
>gnl|CDD|200929 pfam00014, Kunitz_BPTI, Kunitz/Bovine pancreatic trypsin inhibitor
domain. Indicative of a protease inhibitor, usually a
serine protease inhibitor. Structure is a disulfide rich
alpha+beta fold. BPTI (bovine pancreatic trypsin
inhibitor) is an extensively studied model structure.
Certain family members are similar to the tick
anticoagulant peptide (TAP). This is a highly selective
inhibitor of factor Xa in the blood coagulation
pathways. TAP molecules are highly dipolar, and are
arranged to form a twisted two- stranded antiparallel
beta-sheet followed by an alpha helix.
Length = 53
Score = 73.9 bits (182), Expect = 2e-16
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 704 CMLPEDTGSCHSFNERFRFEPMKGMCIPFSYGGCGGNKNNFYTQAECLDFCR 755
C+LP D G C R+ + P G C PF YGGCGGN NNF + EC CR
Sbjct: 2 CLLPPDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKACR 53
Score = 52.7 bits (127), Expect = 5e-09
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 782 CIPFSYGGCGGNKNNFYTQAECLDFCR 808
C PF YGGCGGN NNF + EC CR
Sbjct: 27 CEPFIYGGCGGNANNFESLEECEKACR 53
>gnl|CDD|238057 cd00109, KU, BPTI/Kunitz family of serine protease inhibitors;
Structure is a disulfide rich alpha+beta fold. BPTI
(bovine pancreatic trypsin inhibitor) is an extensively
studied model structure.
Length = 54
Score = 73.4 bits (181), Expect = 2e-16
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 702 TTCMLPEDTGSCHSFNERFRFEPMKGMCIPFSYGGCGGNKNNFYTQAECLDFCR 755
C LP DTG C ++ R+ ++ C PF+YGGCGGN NNF T+ EC C
Sbjct: 1 DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54
Score = 54.9 bits (133), Expect = 7e-10
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 780 RMCIPFSYGGCGGNKNNFYTQAECLDFCR 808
+ C PF+YGGCGGN NNF T+ EC C
Sbjct: 26 KQCEPFTYGGCGGNANNFATKEECERTCG 54
>gnl|CDD|197529 smart00131, KU, BPTI/Kunitz family of serine protease inhibitors.
Serine protease inhibitors. One member of the family is
encoded by an alternatively-spliced form of Alzheimer's
amyloid beta-protein.
Length = 53
Score = 71.5 bits (176), Expect = 1e-15
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 702 TTCMLPEDTGSCHSFNERFRFEPMKGMCIPFSYGGCGGNKNNFYTQAECLDFC 754
C+LP DTG C R+ ++P G C PF+YGGCGGN NNF + EC C
Sbjct: 1 DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53
Score = 53.8 bits (130), Expect = 2e-09
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 780 RMCIPFSYGGCGGNKNNFYTQAECLDFC 807
C PF+YGGCGGN NNF + EC C
Sbjct: 26 GTCEPFTYGGCGGNANNFESLEECERTC 53
>gnl|CDD|216846 pfam02014, Reeler, Reeler domain.
Length = 127
Score = 65.0 bits (159), Expect = 1e-12
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 212 GSLQLLPNDQLTEFDDDCTNTISEANTTLKTQVQVMWLAPPTGNGCVRIKANVL 265
G+ QL +D+ T +C N ++ ANT KT++ V W+AP G GCV +A V+
Sbjct: 66 GTFQLADDDE-TSQLLNCPNAVTHANTNPKTEISVTWVAPAAGGGCVVFRATVV 118
>gnl|CDD|176096 cd08544, Reeler, Reeler, the N-terminal domain of reelin,
F-spondin, and a variety of other proteins. This domain
is found at the N-terminus of F-spondin, a protein
attached to the extracellular matrix, which plays roles
in neuronal development and vascular remodelling. The
F-spondin reeler domain has been reported to bind
heparin. The reeler domain is also found at the
N-terminus of reelin, an extracellular glycoprotein
involved in the development of the brain cortex, and in
a variety of other eukaryotic proteins with different
domain architectures, including the animal
ferric-chelate reductase 1 or stromal cell-derived
receptor 2, a member of the cytochrome B561 family,
which reduces ferric iron before its transport from the
endosome to the cytoplasm. Also included is the insect
putative defense protein 1, which is expressed upon
bacterial infection and appears to contain a single
reeler domain.
Length = 135
Score = 55.5 bits (134), Expect = 4e-09
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 205 CDQSSSPGSLQLLPNDQLTEFDDDCT--NTISEANTTLKTQVQVMWLAPPTGNGCVRIKA 262
+ G+ QL P+ T+ C N ++ +N + KT V W AP G+GCV +A
Sbjct: 58 ASSNEPVGTFQLPPDS-GTKLLTCCGSDNAVTHSNNSKKTSVTFTWTAPSNGSGCVTFRA 116
Query: 263 NVLANNQLYGDSGKLTREIC 282
V+ + ++ L++ +C
Sbjct: 117 TVVQSYDVFW-VDVLSKTLC 135
>gnl|CDD|215709 pfam00090, TSP_1, Thrombospondin type 1 domain.
Length = 48
Score = 52.4 bits (126), Expect = 5e-09
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 831 GEWGPWSECSVKCGRGYKMRTREVLVQAQGKGTPCPLVLTKRRMCRGVGC 880
W WS CSV CG+G +RTR+ + G PC + + C C
Sbjct: 1 SPWSEWSPCSVTCGKG--IRTRQRTCNSPFGGPPCTGDVQETEACMMDKC 48
Score = 47.4 bits (113), Expect = 3e-07
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 581 GEWEAWSECSVSCGQGLRTRVRRFPDKKTAKKCPHVELVEREPCIESPC 629
W WS CSV+CG+G+RTR R C ++ E E C+ C
Sbjct: 1 SPWSEWSPCSVTCGKGIRTRQRTCNSPFGGPPCT-GDVQETEACMMDKC 48
Score = 42.0 bits (99), Expect = 3e-05
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 513 TPYTPWSNCSATCGKGLRMRSRTYVNPASARAAECDRQLVSKEMC 557
+P++ WS CS TCGKG+R R RT +P C + E C
Sbjct: 1 SPWSEWSPCSVTCGKGIRTRQRTCNSPFG--GPPCTGDVQETEAC 43
Score = 32.0 bits (73), Expect = 0.087
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 641 TDWSDWSPCNASCGYGFKIHTR 662
+ WS+WSPC+ +CG G + R
Sbjct: 1 SPWSEWSPCSVTCGKGIRTRQR 22
>gnl|CDD|214559 smart00209, TSP1, Thrombospondin type 1 repeats. Type 1 repeats in
thrombospondin-1 bind and activate TGF-beta.
Length = 53
Score = 51.0 bits (122), Expect = 2e-08
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 580 VGEWEAWSECSVSCGQGLRTRVR---RFPDKKTAKKCPHVELVEREPCIESPC 629
EW WS CSV+CG G++TR R P + C E VE C E PC
Sbjct: 1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTG-EDVETRACNEQPC 52
Score = 49.9 bits (119), Expect = 5e-08
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 831 GEWGPWSECSVKCGRGYKMRTRE-VLVQAQGKGTPCPLVLTKRRMCRGVGC 880
EW WS CSV CG G + RTR Q G PC + R C C
Sbjct: 2 SEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPC 52
Score = 47.2 bits (112), Expect = 4e-07
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 512 VTPYTPWSNCSATCGKGLRMRSRTYVN-PASARAAECDRQLVSKEMCIAENPTCP 565
+ ++ WS CS TCG G++ R+R+ + P C + V C + CP
Sbjct: 1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQP--CP 53
Score = 33.3 bits (76), Expect = 0.029
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 640 VTDWSDWSPCNASCGYGFKIHTR 662
++WS+WSPC+ +CG G + TR
Sbjct: 1 WSEWSEWSPCSVTCGGGVQTRTR 23
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 40.3 bits (94), Expect = 0.005
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 572 QVEGKECKVGEWEAWSECSVSCGQGLRTRVRRFPDKKTAKKCPHVELVEREPCIESPCTE 631
+VE + G W+ W+ CSV+CG+G +R R + VE E E C P
Sbjct: 233 EVE-RTASCGPWDEWTPCSVTCGKGTHSRSRPILHEGCTTHM--VEECEEEECPVEPEPL 289
Query: 632 SVVDPLCPV 640
V P+ P
Sbjct: 290 PVPAPVPPT 298
Score = 39.6 bits (92), Expect = 0.008
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 831 GEWGPWSECSVKCGRGYKMRTREVL 855
G W W+ CSV CG+G R+R +L
Sbjct: 241 GPWDEWTPCSVTCGKGTHSRSRPIL 265
Score = 38.8 bits (90), Expect = 0.015
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 514 PYTPWSNCSATCGKGLRMRSRTYVNPASARAAECDRQLVSKEMCIAENPTCPGEEE 569
P+ W+ CS TCGKG RSR ++ C +V + E CP E E
Sbjct: 242 PWDEWTPCSVTCGKGTHSRSRPILH------EGCTTHMVEE----CEEEECPVEPE 287
Score = 36.5 bits (84), Expect = 0.062
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 623 PCIESPCTESVVDPLCPVTDWSDWSPCNASCGYGFKIHTRFLLADKQHEAECLQRVSLNE 682
P I CTE V+ W +W+PC+ +CG G +R +L HE V E
Sbjct: 225 PFIAKVCTE--VERTASCGPWDEWTPCSVTCGKGTHSRSRPIL----HEGCTTHMVEECE 278
Query: 683 TKRCKSPRGDCKVDMAEVKTTCMLPEDTGSCHSFNERFRFEPMKGMCIP 731
+ C V A V T PED + +E +G+ +P
Sbjct: 279 EEECPVEPEPLPVP-APVPPT---PEDDNPRPTDDEFAVPNFNEGLDVP 323
>gnl|CDD|185438 PTZ00087, PTZ00087, thrombosponding-related protein; Provisional.
Length = 340
Score = 33.8 bits (77), Expect = 0.34
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 573 VEGKECKVGEWEAWSECSVSCGQGLRTRVRRFPDKKTAKKCPHVELVEREPCIE--SPCT 630
+E K EW WS CS+ C ++R + C +L E PC PC
Sbjct: 226 IEKKNMFYTEWGEWSNCSMECDHPDNVQIRERKCAHPSGDCFKGDLKETRPCQVPLPPCN 285
Query: 631 E 631
Sbjct: 286 S 286
Score = 29.9 bits (67), Expect = 6.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 832 EWGPWSECSVKCGRGYKMRTRE 853
EWG WS CS++C ++ RE
Sbjct: 235 EWGEWSNCSMECDHPDNVQIRE 256
Score = 29.1 bits (65), Expect = 9.8
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 22/68 (32%)
Query: 641 TDWSDWSPCNASCGYGFKIHTRFLLADKQHEAECLQRVSLNETKRCKSPRGDC-KVDMAE 699
T+W +WS C+ C + + R ++C P GDC K D+ E
Sbjct: 234 TEWGEWSNCSMECDHPDNVQIR--------------------ERKCAHPSGDCFKGDLKE 273
Query: 700 VKTTCMLP 707
+ C +P
Sbjct: 274 TR-PCQVP 280
>gnl|CDD|200487 cd11349, AmyAc_3, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 456
Score = 31.5 bits (72), Expect = 2.4
Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 149 IIDLYPYDAGTDNGV--SYMSINIPAVPQEKIHKITPMYPEDERAPFYDPVNNFMYPLCD 206
IID P N V Y S K + D+ + +DP NNF Y L
Sbjct: 124 IIDFVP------NHVARQYHSDA-------KPEGVKDFGANDDTSKAFDPSNNFYY-LPG 169
Query: 207 QSSSPGSLQLLPNDQLTEFDDD 228
+ + +
Sbjct: 170 EPFVLPFSLNGSPATDGPYHES 191
>gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial
glycerophosphodiester phosphodiesterases. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in a group of
uncharacterized bacterial glycerophosphodiester
phosphodiesterase and similar proteins. They show high
sequence similarity to Escherichia coli
glycerophosphodiester phosphodiesterase, which catalyzes
the degradation of glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 229
Score = 29.6 bits (67), Expect = 5.5
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 29/120 (24%)
Query: 540 ASARAAECDRQLVSKEMCIAENPTCPGE------EEEEQVEGKECKVGEWEAWSECSVSC 593
A AR E D QL + G + ++ G E + E E S+
Sbjct: 25 AGARFVEFDVQL-----------SADGVPVVFHDDTLLRLTGVEGLLHELEDAELDSLRV 73
Query: 594 GQGLRTRVRRFPDKKTA---------KKCPHVEL-VE-REPCIESPCTESVVDPLCPVTD 642
+ R RF + + P V L VE + ++ E VVD +
Sbjct: 74 AEPARF-GSRFAGEPLPSLAAVVQWLAQHPQVTLFVEIKTESLDRFGLERVVDKVLRALP 132
>gnl|CDD|234061 TIGR02923, AhaC, ATP synthase A1, C subunit. The A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The C subunit is part
of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which
is the site of ATP generation and is coupled to the
membrane-embedded proton translocating A0 complex.
Length = 343
Score = 29.7 bits (67), Expect = 7.3
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 11 YKFIFEGLWRNETHPKDFPKSLWLTHF 37
+ +E L + P D L+
Sbjct: 176 DRMYYEKLLKYVGSPSDDETKLFTEFI 202
Score = 29.7 bits (67), Expect = 7.3
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 303 YKFIFEGLWRNETHPKDFPKSLWLTHF 329
+ +E L + P D L+
Sbjct: 176 DRMYYEKLLKYVGSPSDDETKLFTEFI 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.444
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,525,193
Number of extensions: 4197683
Number of successful extensions: 2760
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2756
Number of HSP's successfully gapped: 30
Length of query: 893
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 787
Effective length of database: 6,236,078
Effective search space: 4907793386
Effective search space used: 4907793386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.3 bits)