BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1771
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 117 bits (293), Expect = 4e-27, Method: Composition-based stats.
Identities = 84/248 (33%), Positives = 108/248 (43%), Gaps = 52/248 (20%)
Query: 3 TVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--- 59
T ++W LGK + HAIV A+LIT +GLHAF+VPIR+ T P PG+TVGD+
Sbjct: 171 TSIKWWPGGLGKTSNHAIVLAQLITQGEC-YGLHAFVVPIREIGTHKPLPGITVGDIGPK 229
Query: 60 --------------------------------EGTYTSPFRDPGKRFGSSLGALSTGRVS 87
+GTY P + + G + R
Sbjct: 230 FGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-----LTYGTMVFVRSF 284
Query: 88 IIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSXXXXXXXXXXXXXQWRLFPHLAAVY 147
++G LSKA TIA+RY+ VRRQ KQ Q++LFP LA Y
Sbjct: 285 LVGNAAQSLSKACTIAIRYSAVRRQ-SEIKQSEPEPQILDFQTQ----QYKLFPLLATAY 339
Query: 148 MLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECR 207
Y R + G GD L E+HAL++ K W A GI+ECR
Sbjct: 340 AFHFVGRYMKETYLRINESI--GQGDLSEL----PELHALTAGLKAFTTWTANAGIEECR 393
Query: 208 EACGGHGY 215
ACGGHGY
Sbjct: 394 MACGGHGY 401
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 109/248 (43%), Gaps = 46/248 (18%)
Query: 3 TVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--- 59
T +W LGK +THA+V+ARLIT D D+G++ F+V +R + P PGVTVGD+
Sbjct: 189 TSSKWWPGGLGKVSTHAVVYARLIT-DGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMK 247
Query: 60 --EGTYTS-----------------------PFRDPGKRFGSSL------GALSTGRVSI 88
G Y S GK S + G + R SI
Sbjct: 248 FGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSI 307
Query: 89 IGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSXXXXXXXXXXXXXQWRLFPHLAAVYM 148
+ +S+A+ IA RY+ VRRQFG G ++ Q RLFP LA+ Y
Sbjct: 308 VADASLAMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKTQ-----QNRLFPLLASAYA 362
Query: 149 LRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECRE 208
R ++ +L D L E HA ++ K L DGI+ECR+
Sbjct: 363 FRFVGEWLKWLYTDVTQRL--AANDFSTL----PEAHACTAGLKSLTTSATADGIEECRK 416
Query: 209 ACGGHGYL 216
CGGHGYL
Sbjct: 417 LCGGHGYL 424
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 110/248 (44%), Gaps = 46/248 (18%)
Query: 3 TVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--- 59
T +W LGK +THA+V+ARLIT + D+G+H F+V +R + P P +TVGD+
Sbjct: 170 TASKWWPGGLGKVSTHAVVYARLIT-NGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTK 228
Query: 60 --EGTYTS---------PFRDPGKRFGSSL--------------------GALSTGRVSI 88
G Y S R P + L G + R +I
Sbjct: 229 MGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTI 288
Query: 89 IGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSXXXXXXXXXXXXXQWRLFPHLAAVYM 148
+ LS+A+ IA RY+ VRRQFG G ++ Q RLFP LA+ Y
Sbjct: 289 VADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQ-----QNRLFPLLASAYA 343
Query: 149 LRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECRE 208
R ++ + + E D+ A E HA ++ K L DGI+ECR+
Sbjct: 344 FRFVGEW----LKWLYTDVTERLAASDF--ATLPEAHACTAGLKSLTTTATADGIEECRK 397
Query: 209 ACGGHGYL 216
CGGHGYL
Sbjct: 398 LCGGHGYL 405
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 65/184 (35%), Gaps = 31/184 (16%)
Query: 7 WIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE------ 60
WI AT +VFA + G+ AFLVP +P PG+T+G E
Sbjct: 161 WITNSWEASAT--VVFAS-TDRSRQNKGISAFLVP-------MPTPGLTLGKKEDKLGIR 210
Query: 61 --GTYTSPFRD-----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYA 107
T F D PG F ++ L GR+ I + ++ AV+YA
Sbjct: 211 ASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYA 270
Query: 108 GVRRQFGPPKQGSDSXXXXXXXXXXXXXQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKL 167
R FG P + RL AA ML+ FT+E ++
Sbjct: 271 ENRHAFGAPLTKLQNIQFKLADMALALESARLLTWRAA--MLKDNKKPFTKESAMAKLAA 328
Query: 168 MEGG 171
E
Sbjct: 329 SEAA 332
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 37/125 (29%)
Query: 16 ATHAIVFARLITPDSVDHGLH-----AFLVPIRDPKTLLPYPGVTVGDLE------GTYT 64
A+ A+VFA S D L AFLVP +P PG+T+G E G+ T
Sbjct: 164 ASAAVVFA------STDRALQNKSISAFLVP-------MPTPGLTLGKKEDKLGIRGSST 210
Query: 65 SP--FRD-----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRR 111
+ F D PG F ++ L GR+ I + A+ AV YA R
Sbjct: 211 ANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRM 270
Query: 112 QFGPP 116
FG P
Sbjct: 271 AFGAP 275
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 33 HGLHAFLVPIRDPKTLLPYPGVTVGDLE--GTYTSP----FRD------------PGKRF 74
GL AF++ R+ +PG+ +LE G++ SP F D PG
Sbjct: 182 RGLSAFVIEPRN------FPGIKTSNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGA 235
Query: 75 GSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPP 116
G+L+ R+S V + A++Y RRQFG P
Sbjct: 236 RIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKP 277
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 27/123 (21%)
Query: 13 GKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE---GTYTSP--- 66
G A IVFA + +HG+ AF+ + D PG T G E G +TS
Sbjct: 164 GGAADIYIVFA-MTDKSKGNHGITAFI--LEDGT-----PGFTYGKKEDKMGIHTSQTME 215
Query: 67 --FRD-----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQF 113
F+D GK F ++ L GR+ + + A+ AV Y+ R QF
Sbjct: 216 LVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQF 275
Query: 114 GPP 116
G P
Sbjct: 276 GKP 278
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 28/130 (21%)
Query: 1 MGTVLQWIVYKLGKCATHA---IVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVG 57
+ V WI A HA +V AR + G+ AFLV P P +G
Sbjct: 148 LNGVKSWIT-----SAGHAHLYVVMAR------TEKGISAFLVEKGTPGLSFGRPEEKMG 196
Query: 58 DLEGTYTSPFR-------------DPGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAV 104
L +T+ R + G+ +L L +GRV + V A IA
Sbjct: 197 -LHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAK 255
Query: 105 RYAGVRRQFG 114
YA R QFG
Sbjct: 256 AYAEEREQFG 265
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 26/111 (23%)
Query: 25 LITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE---GTYTSPFRD------------ 69
+ PD +G+ AF+V D G TVG E G SP +
Sbjct: 184 VTDPDKGANGISAFMVHKDDE-------GFTVGPKERKLGIKGSPTTELYFENCRIPGDR 236
Query: 70 ----PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPP 116
PG F ++L L R +I V A+ A+ Y R+QFG P
Sbjct: 237 IIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRP 287
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 7 WIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLEGTYTSP 66
WI + G A +FAR G+ FLVP P P +G TS
Sbjct: 166 WITH--GGKADFYTLFART---GEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSA 220
Query: 67 FRDPGK-----RFGS-------SLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFG 114
F D + R G + AL +GR+ I A+ AV YA R FG
Sbjct: 221 FYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFG 280
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 ALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPP 116
+L+ GR S+ CV L T AV +A R QFG P
Sbjct: 221 SLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRP 257
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 41/168 (24%)
Query: 61 GTYTSPFRD-----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGV 109
GTY F D G+ F ++ L+ R+ + V +A+ A +YA
Sbjct: 207 GTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKE 266
Query: 110 RRQFGPPKQGSDSXXXXXXXXXXXXXQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLME 169
R FG P + Q++L L + R+++ Y
Sbjct: 267 REAFGEPIANFQA------------IQFKLVDMLIGIETARMYTYYAA------------ 302
Query: 170 GGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217
+L G S+ K A IA + + + GG+GY++
Sbjct: 303 ------WLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVR 344
>pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
pdb|2PG8|B Chain B, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
pdb|2PG8|C Chain C, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
Length = 417
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 52 PGVTVGDLEGTYTSPFRDPGKRF---GSSLGALSTGRVSIIGFCV 93
PGV VG L G S R GKR G +L LS G +S++ F +
Sbjct: 199 PGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLM 243
>pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
pdb|2NP9|B Chain B, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
pdb|2NP9|C Chain C, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
Length = 440
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 52 PGVTVGDLEGTYTSPFRDPGKRF---GSSLGALSTGRVSIIGFCV 93
PGV VG L G S R GKR G +L LS G +S++ F +
Sbjct: 210 PGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLM 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,852,010
Number of Sequences: 62578
Number of extensions: 271361
Number of successful extensions: 510
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 19
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)