Query psy1771
Match_columns 217
No_of_seqs 108 out of 1239
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 21:01:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 100.0 3.8E-39 8.2E-44 262.6 11.0 178 1-217 180-376 (398)
2 KOG0140|consensus 100.0 4.1E-36 8.9E-41 241.6 12.2 178 1-217 171-370 (408)
3 TIGR03203 pimD_small pimeloyl- 100.0 1.4E-32 3.1E-37 236.8 19.7 181 1-217 148-344 (378)
4 PTZ00460 acyl-CoA dehydrogenas 100.0 2.8E-30 6.1E-35 234.1 23.2 202 3-217 166-397 (646)
5 PLN02636 acyl-coenzyme A oxida 100.0 2.9E-30 6.3E-35 235.4 21.0 198 4-217 213-451 (686)
6 cd01154 AidB Proteins involved 100.0 4.3E-30 9.3E-35 224.0 19.7 191 1-217 178-384 (418)
7 PRK11561 isovaleryl CoA dehydr 100.0 9.7E-30 2.1E-34 225.8 19.9 183 1-217 209-407 (538)
8 KOG0141|consensus 100.0 5.4E-31 1.2E-35 212.4 10.4 178 1-217 187-385 (421)
9 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.1E-29 2.4E-34 218.4 19.0 179 1-217 144-340 (372)
10 PRK09463 fadE acyl-CoA dehydro 100.0 4.8E-30 1E-34 235.1 17.6 179 1-217 231-436 (777)
11 cd01150 AXO Peroxisomal acyl-C 100.0 5.7E-29 1.2E-33 225.3 22.6 202 4-217 174-410 (610)
12 PRK12341 putative acyl-CoA deh 100.0 2.2E-29 4.8E-34 217.2 19.0 179 1-217 148-344 (381)
13 PLN02312 acyl-CoA oxidase 100.0 4.8E-29 1.1E-33 227.0 22.0 194 4-217 225-453 (680)
14 cd01157 MCAD Medium chain acyl 100.0 3.9E-29 8.5E-34 215.3 19.0 178 1-217 144-343 (378)
15 COG1960 CaiA Acyl-CoA dehydrog 100.0 3.6E-29 7.9E-34 216.5 18.3 179 1-217 156-354 (393)
16 PRK13026 acyl-CoA dehydrogenas 100.0 2.8E-29 6.1E-34 229.4 17.3 176 1-217 230-435 (774)
17 cd01160 LCAD Long chain acyl-C 100.0 7.5E-29 1.6E-33 213.1 19.0 179 1-217 142-339 (372)
18 cd01162 IBD Isobutyryl-CoA deh 100.0 1E-28 2.2E-33 212.6 19.0 178 1-217 144-340 (375)
19 PRK03354 crotonobetainyl-CoA d 100.0 1E-28 2.2E-33 213.0 18.9 178 1-217 148-343 (380)
20 PTZ00456 acyl-CoA dehydrogenas 100.0 2.3E-28 5E-33 221.0 21.5 211 1-217 212-445 (622)
21 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.6E-28 3.4E-33 212.2 19.0 175 1-217 156-348 (386)
22 cd01161 VLCAD Very long chain 100.0 3.6E-28 7.8E-33 211.5 19.4 181 1-217 170-372 (409)
23 PLN02519 isovaleryl-CoA dehydr 100.0 3.8E-28 8.3E-33 211.0 19.5 178 1-217 172-368 (404)
24 cd01156 IVD Isovaleryl-CoA deh 100.0 3.6E-28 7.9E-33 209.1 18.7 178 1-217 146-342 (376)
25 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1.1E-27 2.4E-32 207.5 19.7 180 1-217 156-360 (394)
26 PTZ00461 isovaleryl-CoA dehydr 100.0 8.2E-28 1.8E-32 209.3 18.9 173 1-217 182-373 (410)
27 PLN02443 acyl-coenzyme A oxida 100.0 2.5E-27 5.4E-32 215.4 22.6 203 3-217 170-406 (664)
28 PLN02526 acyl-coenzyme A oxida 100.0 2E-27 4.4E-32 206.9 19.0 175 1-217 172-364 (412)
29 KOG0137|consensus 100.0 1.7E-28 3.6E-33 212.0 11.0 181 1-217 224-426 (634)
30 cd01158 SCAD_SBCAD Short chain 100.0 4.8E-27 1E-31 201.8 19.1 178 1-217 143-339 (373)
31 TIGR03204 pimC_large pimeloyl- 100.0 2E-27 4.2E-32 206.0 16.3 177 1-216 151-355 (395)
32 cd00567 ACAD Acyl-CoA dehydrog 100.0 9.1E-27 2E-31 196.5 19.5 180 1-217 99-297 (327)
33 cd01153 ACAD_fadE5 Putative ac 99.9 1.8E-26 3.9E-31 200.7 20.0 198 1-217 148-373 (407)
34 PLN02876 acyl-CoA dehydrogenas 99.9 9.9E-27 2.2E-31 217.6 19.0 180 1-217 581-784 (822)
35 KOG0135|consensus 99.9 2E-26 4.4E-31 197.8 16.7 199 4-216 196-429 (661)
36 cd01159 NcnH Naphthocyclinone 99.9 5.8E-26 1.3E-30 195.2 16.2 186 1-217 121-335 (370)
37 cd01163 DszC Dibenzothiophene 99.9 8.2E-26 1.8E-30 194.7 17.1 189 1-217 132-340 (377)
38 cd01152 ACAD_fadE6_17_26 Putat 99.9 4.8E-26 1E-30 196.4 14.7 174 1-217 147-338 (380)
39 KOG1469|consensus 99.9 1.4E-23 3E-28 167.0 10.0 180 1-216 144-347 (392)
40 KOG0138|consensus 99.9 4E-23 8.6E-28 166.6 12.6 174 1-216 200-391 (432)
41 PTZ00457 acyl-CoA dehydrogenas 99.9 2.1E-21 4.5E-26 171.8 15.6 155 1-208 164-336 (520)
42 PF00441 Acyl-CoA_dh_1: Acyl-C 99.8 3.8E-18 8.2E-23 128.2 13.1 117 71-217 1-117 (150)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.8 3.4E-18 7.3E-23 150.7 12.1 177 1-216 179-390 (477)
44 KOG0136|consensus 99.8 1.8E-17 3.8E-22 145.7 14.7 203 2-216 181-413 (670)
45 PF08028 Acyl-CoA_dh_2: Acyl-C 99.5 1.4E-13 3E-18 101.9 11.1 112 86-217 1-112 (134)
46 PF02770 Acyl-CoA_dh_M: Acyl-C 98.0 2.6E-06 5.7E-11 52.3 1.9 24 1-25 28-51 (52)
47 COG2368 Aromatic ring hydroxyl 97.9 0.00044 9.6E-09 60.5 13.0 173 1-212 183-394 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 97.4 0.0058 1.3E-07 54.9 13.6 70 130-212 329-398 (519)
49 PF03241 HpaB: 4-hydroxyphenyl 94.5 0.16 3.4E-06 40.3 6.8 72 129-213 44-115 (205)
50 PF11794 HpaB_N: 4-hydroxyphen 90.3 0.23 5E-06 40.9 2.6 50 1-58 174-223 (264)
51 PTZ00457 acyl-CoA dehydrogenas 88.2 6.2 0.00013 35.9 10.3 68 128-212 432-499 (520)
52 KOG0137|consensus 85.2 13 0.00029 34.0 10.5 96 86-212 508-603 (634)
53 PF04115 Ureidogly_hydro: Urei 36.1 67 0.0015 24.4 4.1 46 3-58 79-124 (165)
54 COG3768 Predicted membrane pro 32.3 2.9E+02 0.0063 23.6 7.4 110 88-215 140-250 (350)
55 PF02500 DNA_pack_N: Probable 26.3 31 0.00067 28.8 0.8 24 35-58 190-223 (284)
No 1
>KOG0139|consensus
Probab=100.00 E-value=3.8e-39 Score=262.63 Aligned_cols=178 Identities=24% Similarity=0.346 Sum_probs=167.2
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
++||.|.|||| +..|+|++|+|.+ ++..+++|+++|+||+ ++||+++..+ ..++.+.|+|
T Consensus 180 viNGsKmWItN-~~~A~~~lVfan~-d~~~~~Kgit~fiV~r-------d~~Gl~~~k~eDKLGmRaSsTcql~fedVrV 250 (398)
T KOG0139|consen 180 VINGSKMWITN-AGEADWFLVFANA-DPSKGYKGITCFIVPR-------DTPGLSLGKKEDKLGMRASSTCQLHFEDVRV 250 (398)
T ss_pred EEecceeeecC-CcccceEEEEEec-ChhhccCceeEEEeeC-------CCCCcccCCccccccccccceeeEEeccccc
Confidence 58999999999 9999999999999 7888999999999999 9999999874 4567888887
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
+|.|++..++.|+-+|+.++++.+|.++.||+.++.|+++|.+|| + +|.++|.+|++||+
T Consensus 251 pks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FG--k----------~l~d~Q~iQhqiA~ 318 (398)
T KOG0139|consen 251 PKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFG--K----------RLLDFQGLQHQIAD 318 (398)
T ss_pred cchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhc--c----------hhhhHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999 9 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+..++|++|+++|++++. .+.+.+..-+++|+|++++|.|..+++.|+|.+||.||++
T Consensus 319 ~~teiEaaRlL~ynaAr~------------------k~~G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~ 376 (398)
T KOG0139|consen 319 MATEIEAARLLVYNAARM------------------KDQGLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTK 376 (398)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHcCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccc
Confidence 999999999999997754 4578889999999999999999999999999999999985
No 2
>KOG0140|consensus
Probab=100.00 E-value=4.1e-36 Score=241.64 Aligned_cols=178 Identities=24% Similarity=0.339 Sum_probs=160.8
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCC---CCceeeeEEEEeeeCCCCCCCCCCceeeCCC--------CceeccCCC
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPD---SVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE--------GTYTSPFRD 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~---~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~--------~~~~~~~~~ 69 (217)
|+||.|.|||| +.+|+||+|+||+ |++ ++.+++++|+|+. ++||++.++.+ ++-.+.|+|
T Consensus 171 iiNGsKawItg-~G~anwyfVlaRt-d~~pk~p~~Kaft~fiVe~-------dTpGlt~GkKE~nmGqr~sdTR~itFED 241 (408)
T KOG0140|consen 171 IINGSKAWITG-AGHANWYFVLART-DPDPKTPAGKAFTAFIVEG-------DTPGLTRGKKEKNMGQRCSDTRGITFED 241 (408)
T ss_pred EEcCceeeeec-CCccceEEEEEec-CCCCCCCCCcceEEEEEeC-------CCCCcCcChhhhcccccCCCCceeeeee
Confidence 68999999999 9999999999999 555 5678999999998 99999998742 333445544
Q ss_pred -----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHH
Q psy1771 70 -----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWR 138 (217)
Q Consensus 70 -----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~ 138 (217)
+|.||.+.|..|+..|..+++.++|.+.++++++.+|+.+|++|| . ||+++|.+|+.
T Consensus 242 vrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG--~----------~iA~hQ~vqF~ 309 (408)
T KOG0140|consen 242 VRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFG--T----------PIANHQAVQFM 309 (408)
T ss_pred cccchhccccCCCccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhC--c----------ChhhhhhHHHH
Confidence 789999999999999999999999999999999999999999999 9 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 139 LFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 139 la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|+||+++++.+|++++++++++|. +.....+++|+|.++++.|.+++..++|++||.||.+
T Consensus 310 LAdMA~~le~aRL~~~~aa~evd~------------------~r~~sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~ 370 (408)
T KOG0140|consen 310 LADMAINLELARLMTRNAAWEVDN------------------GRRNSYYASIAKLFATDTANQAATNAVQIFGGNGFNK 370 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------------------CCcchHHHHHHHHHhhhhHHHHHHHHHHhhccCCccc
Confidence 999999999999999999988762 3334889999999999999999999999999999963
No 3
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.4e-32 Score=236.78 Aligned_cols=181 Identities=23% Similarity=0.250 Sum_probs=156.6
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC-----CCceeccCCC------
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL-----EGTYTSPFRD------ 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~-----~~~~~~~~~~------ 69 (217)
+|||+|+||++ +..||+++|+++++++++++.++++||||+ +.|||++.+. ...+++.|+|
T Consensus 148 ~l~G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~~-------~~~Gv~~~~~~~~~g~~~~~l~fd~v~vp~~ 219 (378)
T TIGR03203 148 VIDGEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVPA-------GAKGVTIKGYPTQDGLHAADITFTGVVVGAD 219 (378)
T ss_pred EEEeEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEEC-------CCCCceeccccccCCCceeeEEECCCcccHH
Confidence 48999999999 999999999999842223457899999998 8899998652 2346778876
Q ss_pred -----CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHH
Q psy1771 70 -----PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLA 144 (217)
Q Consensus 70 -----~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~ 144 (217)
+++|+..++..++..|+.+++.++|+++++++.+++|+++|++|| + ||.+||.||++|++|.+
T Consensus 220 ~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG--~----------pi~~~Q~vq~~lAdm~~ 287 (378)
T TIGR03203 220 AAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFG--V----------PIGSFQVLQHRAADMFV 287 (378)
T ss_pred hhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecC--c----------cchhhHHHHHHHHHHHH
Confidence 357888888999999999999999999999999999999999999 9 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 145 AVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 145 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+++++|++++++++..+. +.+.+....++++|+++++.+.++++.++|+|||.||++
T Consensus 288 ~~e~ar~l~~~aa~~~~~----------------~~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~ 344 (378)
T TIGR03203 288 AVEQARSMAMFATMASDF----------------DDAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTM 344 (378)
T ss_pred HHHHHHHHHHHHHHHhcc----------------cccchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecc
Confidence 999999999998875431 011234568899999999999999999999999999974
No 4
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=2.8e-30 Score=234.12 Aligned_cols=202 Identities=29% Similarity=0.420 Sum_probs=165.7
Q ss_pred cceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCCC----
Q psy1771 3 TVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRDP---- 70 (217)
Q Consensus 3 nG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~~---- 70 (217)
||+|+||++++..||+++|+||+. .++++.|+++||||.||.+++.+.|||++++. .+++.+.|+|.
T Consensus 166 ~g~K~wi~~~g~~A~~~vV~Arl~-~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~ 244 (646)
T PTZ00460 166 EAVKFWPGELGFLCNFALVYAKLI-VNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPL 244 (646)
T ss_pred CeEEEccCCCCCCCCEEEEEEEEC-cCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECH
Confidence 499999997468899999999994 45667899999999998888889999999762 24567777761
Q ss_pred -------------C----ch-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchh
Q psy1771 71 -------------G----KR-FGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEY 132 (217)
Q Consensus 71 -------------~----~g-~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~ 132 (217)
| .| +......+..+|+.+++.++|++++|++++++|+++|++|| +. ...+.||+++
T Consensus 245 ~nlLg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg--~~----~~~E~pI~~y 318 (646)
T PTZ00460 245 DSLLARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFT--ND----NKQENSVLEY 318 (646)
T ss_pred HHhCCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC--CC----CCCCCcHhhh
Confidence 2 13 56677888899999999999999999999999999999999 31 1236799999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q psy1771 133 ELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGG 212 (217)
Q Consensus 133 ~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~ 212 (217)
|.+|++|+++.+++++++.+++++.+.+++.....+..+ .....+....++++|.++++.+.+++++|+|+|||
T Consensus 319 Q~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG 392 (646)
T PTZ00460 319 QTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKND------FSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGG 392 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998876433221100 00123457789999999999999999999999999
Q ss_pred CCCCC
Q psy1771 213 HGYLK 217 (217)
Q Consensus 213 ~g~~~ 217 (217)
+||++
T Consensus 393 ~Gy~~ 397 (646)
T PTZ00460 393 HGYAH 397 (646)
T ss_pred ccccc
Confidence 99974
No 5
>PLN02636 acyl-coenzyme A oxidase
Probab=99.97 E-value=2.9e-30 Score=235.39 Aligned_cols=198 Identities=36% Similarity=0.608 Sum_probs=158.4
Q ss_pred ceeeeccCCCC-CCcEEEEEEEeeeCC-----CCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC
Q psy1771 4 VLQWIVYKLGK-CATHAIVFARLITPD-----SVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD 69 (217)
Q Consensus 4 G~K~~is~~~~-~A~~~~v~ar~~~~~-----~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~ 69 (217)
|+|+||+| +. .||+++|+||+..+. +++.|+++||||+|+.+++.+.|||++.+. .+++.+.|+|
T Consensus 213 g~K~wI~n-a~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~Fdn 291 (686)
T PLN02636 213 AIKWWIGN-AAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRS 291 (686)
T ss_pred eEEEeecC-CcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEee
Confidence 99999999 65 499999999984221 136799999999999888999999999862 2355666665
Q ss_pred ---------------------------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCC
Q psy1771 70 ---------------------------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDS 122 (217)
Q Consensus 70 ---------------------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~ 122 (217)
+++||...+..+..+|+.+++.++|++++|++++++|++.|++|| +++
T Consensus 292 VrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg--~p~--- 366 (686)
T PLN02636 292 VRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFG--PPK--- 366 (686)
T ss_pred EEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCC--CCC---
Confidence 146888889999999999999999999999999999999999999 511
Q ss_pred CCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHH
Q psy1771 123 EPEELPVLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDG 202 (217)
Q Consensus 123 ~~~~~~l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~ 202 (217)
..++||+++|.+|++|++|.+++++++...+.+.+.+....... + .....+...+++++|.++++.+.++
T Consensus 367 -~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~---~------~~~~~~~~~~as~aK~~~t~~a~~~ 436 (686)
T PLN02636 367 -QPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTH---D------DQLVADVHALSAGLKAYITSYTAKA 436 (686)
T ss_pred -CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C------cccchhhHHHHHHHHHHHHHHHHHH
Confidence 12445999999999999999999997766655554443221110 0 0012357789999999999999999
Q ss_pred HHHHHHHhcCCCCCC
Q psy1771 203 IQECREACGGHGYLK 217 (217)
Q Consensus 203 ~~~~~~~~G~~g~~~ 217 (217)
+++|+|+|||+||++
T Consensus 437 ~~~~rq~~GG~Gy~~ 451 (686)
T PLN02636 437 LSTCREACGGHGYAA 451 (686)
T ss_pred HHHHHHHhcCCcccC
Confidence 999999999999974
No 6
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.97 E-value=4.3e-30 Score=224.04 Aligned_cols=191 Identities=25% Similarity=0.246 Sum_probs=158.2
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|+|+|+ + +||+++|+||++...+++.++++||||++.++ ...|||++.+. .+++++.|+|
T Consensus 178 ~LnG~K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~--~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~~ 253 (418)
T cd01154 178 RLNGHKWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPRLLED--GTRNGYRIRRLKDKLGTRSVATGEVEFDDAEA 253 (418)
T ss_pred EEEEEEEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCC--CCCCCeEecccccccCCCCCCeEEEEecCcCc
Confidence 48999999999 8 99999999999433345689999999984321 12359998763 2467888887
Q ss_pred -----CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHH
Q psy1771 70 -----PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLA 144 (217)
Q Consensus 70 -----~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~ 144 (217)
+++|+..++..++.+|+.+++.++|+++++++.+++|+++|++|| + |++++|.+|++|+++.+
T Consensus 254 ~~lG~~g~G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg--~----------~l~~~~~v~~~La~~~~ 321 (418)
T cd01154 254 YLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFG--K----------PLIDHPLMRRDLAEMEV 321 (418)
T ss_pred cccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC--C----------chhhhHHHHHHHHHHHH
Confidence 578999889999999999999999999999999999999999999 9 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 145 AVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 145 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+++++|++++++++.++.... ............++++|+++++.+.++++.++|++||.||++
T Consensus 322 ~~eaar~l~~~aa~~~~~~~~----------~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~ 384 (418)
T cd01154 322 DVEAATALTFRAARAFDRAAA----------DKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLE 384 (418)
T ss_pred HHHHHHHHHHHHHHHhhcccc----------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcC
Confidence 999999999999987653100 000001123457889999999999999999999999999964
No 7
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.97 E-value=9.7e-30 Score=225.81 Aligned_cols=183 Identities=20% Similarity=0.173 Sum_probs=154.3
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|+|+|+ +.||+++|+||+ + .|+++|+||+..+ +...+||++.+. ..++++.|+|
T Consensus 209 ~LnG~K~fiSa--~~AD~~lVlArt-~-----~Gls~FlVp~~~p--~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~~ 278 (538)
T PRK11561 209 RLVGHKWFFSV--PQSDAHLVLAQA-K-----GGLSCFFVPRFLP--DGQRNAIRLERLKDKLGNRSNASSEVEFQDAIG 278 (538)
T ss_pred EEEEEEEEEEc--hhhCEEEEEEEE-C-----CceEEEEEECCCC--CCCCCceEEecccccccCCCCceeEEEECCHHH
Confidence 48999999996 679999999999 2 3699999998321 011337998652 2457888886
Q ss_pred -----CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHH
Q psy1771 70 -----PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLA 144 (217)
Q Consensus 70 -----~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~ 144 (217)
+++|+..++..++..|+.+++.++|+++++++.+++|+++|++|| + ||+++|.+|++|++|.+
T Consensus 279 ~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG--~----------~L~~~q~vq~~LAdm~~ 346 (538)
T PRK11561 279 WLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFG--K----------PLIEQPLMRQVLSRMAL 346 (538)
T ss_pred HHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCC--C----------ccccCHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999 9 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 145 AVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 145 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
++++++++++++++.+|.. . ...........++++|+++++.+.+++++++|++||.||++
T Consensus 347 ~ieaar~l~~~aa~~~d~~-----------~-~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~e 407 (538)
T PRK11561 347 QLEGQTALLFRLARAWDRR-----------A-DAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCE 407 (538)
T ss_pred HHHHHHHHHHHHHHHHhCC-----------C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 9999999999999887630 0 00112235678889999999999999999999999999975
No 8
>KOG0141|consensus
Probab=99.97 E-value=5.4e-31 Score=212.36 Aligned_cols=178 Identities=21% Similarity=0.262 Sum_probs=162.7
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCC--CCceeeeEEEEeeeCCCCCCCCCCceeeC--------CCCceeccCCC-
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPD--SVDHGLHAFLVPIRDPKTLLPYPGVTVGD--------LEGTYTSPFRD- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~--~~~~~l~~flVp~~~~~~~~~~~Gv~i~~--------~~~~~~~~~~~- 69 (217)
||||.|.|||| |+.||..+|.|+++ .. ++..||++|+|+. +.||++..+ ..++++++|+|
T Consensus 187 iLNGsK~witN-G~~advliVyAkTd-~~a~~~~hGIt~FiVEk-------gm~GFs~~~KLdKlGmrgsdTcELvFed~ 257 (421)
T KOG0141|consen 187 ILNGSKFWITN-GPDADVLIVYAKTD-HSAVPPSHGITAFIVEK-------GMPGFSTAQKLDKLGMRGSDTCELVFEDC 257 (421)
T ss_pred EecCcEEEEec-CCCCcEEEEEEecC-CCCCCCcCceEEEEEcC-------CCcccccchhhHhhcCCCCcchheehhhc
Confidence 69999999999 99999999999994 45 5689999999999 999999887 35788999987
Q ss_pred ----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHh
Q psy1771 70 ----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRL 139 (217)
Q Consensus 70 ----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~l 139 (217)
++.|+-.+|.-|+.+|+.+++..+|+++.+++.++.|+++|++|| + ++.+||.+|.++
T Consensus 258 ~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afg--k----------~ig~fQ~~Qgkl 325 (421)
T KOG0141|consen 258 KVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFG--K----------KIGHFQLLQGKL 325 (421)
T ss_pred cCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhC--C----------chhHHHHHHhHH
Confidence 578998899999999999999999999999999999999999999 9 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 140 FPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 140 a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+||+..+.++|.+++..++..| .+....-.++++++|++|.+.+++-.|+|++||.||+.
T Consensus 326 AdmyT~l~a~Rsyvy~va~~~d------------------~g~~~~kdcag~il~aaE~~tqVald~iQ~~GGnGYin 385 (421)
T KOG0141|consen 326 ADMYTTLCASRSYVYNVARACD------------------AGNVDPKDCAGVILYAAEKATQVALDAIQCLGGNGYIN 385 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------------------cCCCChhhhhhhhhhHhhhhHHHHHHHHhhccCccccc
Confidence 9999999999999999887654 33455567899999999999999999999999999973
No 9
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.97 E-value=1.1e-29 Score=218.36 Aligned_cols=179 Identities=24% Similarity=0.253 Sum_probs=153.2
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeC-------CCCceeccCCC----
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGD-------LEGTYTSPFRD---- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~-------~~~~~~~~~~~---- 69 (217)
+|||+|.|||+ +.+|||++|++++++++.+..++++|+||+ +.|||++.+ ..+++++.|+|
T Consensus 144 ~lnG~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~-------~~~gv~~~~~~~~G~r~~~~~~v~f~~v~Vp 215 (372)
T TIGR03207 144 VLNGEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVPM-------DLPGITRNRFDCHGQRAIGRGSIFFENVRVP 215 (372)
T ss_pred EEEEEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEcC-------CCCCeecCcchhccCCCCCeeEEEECceecc
Confidence 48999999999 899999999999842223345789999998 789998753 23457788877
Q ss_pred -------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 70 -------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 70 -------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
++.|+...+..++..|+.+++.++|+++++|+.+++|+++|++|| + |+.++|.||++|++|
T Consensus 216 ~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg--~----------~i~~~q~v~~~la~~ 283 (372)
T TIGR03207 216 ADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFG--K----------PLSAFQGVSHPLADA 283 (372)
T ss_pred HHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--C----------chhhhHhHHHHHHHH
Confidence 356787778889999999999999999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
.++++++|++++++++.++. +......++++|+++++.+.++++.++|++||.||++
T Consensus 284 ~~~~~~ar~l~~~aa~~~~~------------------~~~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~ 340 (372)
T TIGR03207 284 ETQVEAARLLCLQTLWLKDH------------------GLPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDR 340 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhC------------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 99999999999999876541 1112346789999999999999999999999999974
No 10
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.97 E-value=4.8e-30 Score=235.10 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=154.4
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCC-----CCceeeeEEEEeeeCCCCCCCCCCceeeCCC-------CceeccCC
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPD-----SVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE-------GTYTSPFR 68 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~-----~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~-------~~~~~~~~ 68 (217)
+|||+|+|||+ ++.||+++|++++.+++ +++.|+++||||+ +.|||++.+.. .+.++.|+
T Consensus 231 vLNG~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~-------d~pGV~ig~~~~~lG~r~~~g~v~fd 302 (777)
T PRK09463 231 RLTWNKRYITL-APIATVLGLAFKLYDPDGLLGDKEDLGITCALIPT-------DTPGVEIGRRHFPLNVPFQNGPTRGK 302 (777)
T ss_pred EEEEEEEeeCC-CCccCEEEEEEEecCcccccCCCCCCceEEEEEEC-------CCCCeEecccccccCcccccceEEee
Confidence 48999999999 99999999999964443 2357899999998 89999997632 23455555
Q ss_pred C--------------CCchhHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhH
Q psy1771 69 D--------------PGKRFGSSLGALSTGR-VSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYE 133 (217)
Q Consensus 69 ~--------------~~~g~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~ 133 (217)
| +++||..++..++.+| +.+++.++|+++.+++.+++|+++|++|| + ||+++|
T Consensus 303 dV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG--~----------pIg~fQ 370 (777)
T PRK09463 303 DVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFK--L----------PIGKFE 370 (777)
T ss_pred eeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--C----------ChhhcH
Confidence 5 2789999999999999 89999999999999999999999999999 9 999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC
Q psy1771 134 LLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGH 213 (217)
Q Consensus 134 ~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~ 213 (217)
.||++|++|.+++++++++.+.+++.+| .+......++++|++++|.+.++++.++|+|||.
T Consensus 371 aVQ~~LAdma~~~~a~eaar~~~a~~~D------------------~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~ 432 (777)
T PRK09463 371 GIEEPLARIAGNAYLMDAARTLTTAAVD------------------LGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGK 432 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 9999999999999999988888776554 1223356789999999999999999999999999
Q ss_pred CCCC
Q psy1771 214 GYLK 217 (217)
Q Consensus 214 g~~~ 217 (217)
||++
T Consensus 433 G~~~ 436 (777)
T PRK09463 433 GICL 436 (777)
T ss_pred heeC
Confidence 9974
No 11
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.97 E-value=5.7e-29 Score=225.31 Aligned_cols=202 Identities=50% Similarity=0.840 Sum_probs=161.9
Q ss_pred ceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC------
Q psy1771 4 VLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD------ 69 (217)
Q Consensus 4 G~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~------ 69 (217)
|+|+||++++..|++++|+|++. .++++.|+++||||.||.+++++.|||++.+. .+++.+.|+|
T Consensus 174 g~K~wi~~~~~~a~~~vV~Arl~-~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~ 252 (610)
T cd01150 174 ATKWWPGNLGKTATHAVVFAQLI-TPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRE 252 (610)
T ss_pred ceEECccCcccCCCEEEEEEEec-cCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHH
Confidence 99999999445699999999994 34556899999999999888889999999762 2344555554
Q ss_pred ---------------------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCc
Q psy1771 70 ---------------------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELP 128 (217)
Q Consensus 70 ---------------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~ 128 (217)
++.|+..++..+..+|+.+++.++|.+++|++++++|++.|++|| .+ ....++|
T Consensus 253 nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg--~~---~~~~e~~ 327 (610)
T cd01150 253 NLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFG--PK---PSDPEVQ 327 (610)
T ss_pred HhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecC--CC---CCCCcch
Confidence 356777888899999999999999999999999999999999999 41 1133557
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy1771 129 VLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECRE 208 (217)
Q Consensus 129 l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~ 208 (217)
|+++|.+|++|+++.+..++.+.....+...+.......+... .....+....++++|.++++.+.++++.|+|
T Consensus 328 I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~------~~~~~~~~~~aa~~K~~~t~~a~~~~~~~rq 401 (610)
T cd01150 328 ILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGN------SELLAELHALSAGLKAVATWTAAQGIQECRE 401 (610)
T ss_pred hhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777776665543222221110 1123467789999999999999999999999
Q ss_pred HhcCCCCCC
Q psy1771 209 ACGGHGYLK 217 (217)
Q Consensus 209 ~~G~~g~~~ 217 (217)
+|||+||++
T Consensus 402 ~~GG~Gy~~ 410 (610)
T cd01150 402 ACGGHGYLA 410 (610)
T ss_pred HhcCccchh
Confidence 999999974
No 12
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=2.2e-29 Score=217.16 Aligned_cols=179 Identities=20% Similarity=0.232 Sum_probs=153.7
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeC-------CCCceeccCCC----
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGD-------LEGTYTSPFRD---- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~-------~~~~~~~~~~~---- 69 (217)
+|||+|+|+|+ +.+||+++|+|+++++.++..++++|+||+ +.|||++.+ ..++.++.|+|
T Consensus 148 ~lnG~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~-------~~~gv~~~~~~~~G~~~~~~~~v~~~~v~Vp 219 (381)
T PRK12341 148 YLNGQKTFITG-AKEYPYMLVLARDPQPKDPKKAFTLWWVDS-------SKPGIKINPLHKIGWHMLSTCEVYLDNVEVE 219 (381)
T ss_pred EEEeEEEEEcC-CccCCEEEEEEEcCCCCCCCCceEEEEEeC-------CCCceeecccccccCCCCCceEEEECcEEec
Confidence 48999999999 999999999999842223345789999998 789998854 23556777776
Q ss_pred -------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 70 -------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 70 -------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
++.|+..++..++.+|+.+++.++|+++++++.+++|+++|.++| + |+.++|.+|++|+++
T Consensus 220 ~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g--~----------~i~~~~~v~~~la~~ 287 (381)
T PRK12341 220 ESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFG--K----------PIGHNQLIQEKLTLM 287 (381)
T ss_pred HHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC--c----------cHHHhHHHHHHHHHH
Confidence 466887777788899999999999999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
.++++++|++++++++.+++ +......++++|+++++.+.++++.++|++||.||.+
T Consensus 288 ~~~~~aar~~~~~a~~~~d~------------------~~~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~ 344 (381)
T PRK12341 288 AIKIENMRNMVYKVAWQADN------------------GQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTD 344 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhC------------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 99999999999998876541 1223457899999999999999999999999999974
No 13
>PLN02312 acyl-CoA oxidase
Probab=99.97 E-value=4.8e-29 Score=227.03 Aligned_cols=194 Identities=31% Similarity=0.476 Sum_probs=157.6
Q ss_pred ceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC------
Q psy1771 4 VLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD------ 69 (217)
Q Consensus 4 G~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~------ 69 (217)
|+|+||++++..|++++|+||+. .++++.|+++|+||.||.+ +.+.|||++++. .++..+.|+|
T Consensus 225 g~K~wig~a~~~A~~~vV~Arl~-~~~~~~Gv~~FlV~ird~~-~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~ 302 (680)
T PLN02312 225 AQKYWIGGAANHATHTIVFSQLH-INGKNEGVHAFIAQIRDQD-GNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRE 302 (680)
T ss_pred eEEECccCCcccCCEEEEEEEEC-CCCCCCCeEEEEEeecCCC-CCCCCCEEeccCCCcccccCCCceEEEEccEEECHH
Confidence 79999999337999999999994 4566789999999987753 366999999762 2345566665
Q ss_pred ---------------------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCc
Q psy1771 70 ---------------------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELP 128 (217)
Q Consensus 70 ---------------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~ 128 (217)
+++||..++..+..+|+.+++.++|++++|++.+++|++.|+|||... ...+.|
T Consensus 303 nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~-----~~~E~~ 377 (680)
T PLN02312 303 NLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTP-----NGPEVL 377 (680)
T ss_pred HhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCC-----CCccch
Confidence 256788888999999999999999999999999999999999999211 112446
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy1771 129 VLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECRE 208 (217)
Q Consensus 129 l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~ 208 (217)
|+++|.+|++|+++.+++++++....++.+.++.. ..+.+.+...+++++|.++++.+.+++++|+|
T Consensus 378 I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~-------------~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq 444 (680)
T PLN02312 378 LLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR-------------TPESNKAIHVVSSGFKAVLTWHNMRTLQECRE 444 (680)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888777766655420 01123456789999999999999999999999
Q ss_pred HhcCCCCCC
Q psy1771 209 ACGGHGYLK 217 (217)
Q Consensus 209 ~~G~~g~~~ 217 (217)
+|||+||+.
T Consensus 445 ~~GG~Gy~~ 453 (680)
T PLN02312 445 ACGGQGLKT 453 (680)
T ss_pred HhcCccccc
Confidence 999999974
No 14
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.97 E-value=3.9e-29 Score=215.30 Aligned_cols=178 Identities=24% Similarity=0.315 Sum_probs=153.5
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCC---CceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDS---VDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~---~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~ 69 (217)
+|||+|+|+|+ +.+|||++|+++++ +++ +..++++|+||+ +.||+++.+. .+++++.|+|
T Consensus 144 ~l~G~k~~vs~-~~~ad~~lv~a~~~-~~~~~~~~~~~~~~lv~~-------~~~gv~~~~~~~~~G~~~~~s~~~~~~~ 214 (378)
T cd01157 144 IINGQKMWITN-GGKANWYFLLARSD-PDPKCPASKAFTGFIVEA-------DTPGIQPGRKELNMGQRCSDTRGITFED 214 (378)
T ss_pred EEeeEEEeecC-CccCCEEEEEEEeC-CcccCCCCCceEEEEEcC-------CCCCeeccCcccccCCCCCCceEEEecc
Confidence 48999999999 89999999999983 332 245789999998 7899998763 2356788877
Q ss_pred -----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHH
Q psy1771 70 -----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWR 138 (217)
Q Consensus 70 -----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~ 138 (217)
++.|+..+...++..|+.+++.++|+++++++.+++|+++|.+|| + |+.++|.+|++
T Consensus 215 v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg--~----------~i~~~q~vq~~ 282 (378)
T cd01157 215 VRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFG--K----------LIAEHQAVSFM 282 (378)
T ss_pred EEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccC--c----------cHHHhHHHHHH
Confidence 357888778888899999999999999999999999999999999 9 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 139 LFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 139 la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|++|.++++++|++++++++.++. +.......+++|+++++.+.++++.++|++||.||++
T Consensus 283 la~~~~~~~aar~~~~~aa~~~d~------------------~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 343 (378)
T cd01157 283 LADMAMKVELARLAYQRAAWEVDS------------------GRRNTYYASIAKAFAADIANQLATDAVQIFGGNGFNS 343 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 999999999999999999876541 1122346789999999999999999999999999974
No 15
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=3.6e-29 Score=216.52 Aligned_cols=179 Identities=26% Similarity=0.366 Sum_probs=157.8
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCC-CCCceeeCC--------CCceeccCCC--
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLP-YPGVTVGDL--------EGTYTSPFRD-- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~-~~Gv~i~~~--------~~~~~~~~~~-- 69 (217)
+|||+|+|||+ +++|||++|+|+++.+.++++++++|+||+ + .||+++.+. ..++++.|+|
T Consensus 156 ~lnG~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~flV~~-------~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~ 227 (393)
T COG1960 156 VLNGQKIWISN-APVADWLLVLARTDPAPGKHKGISLFLVPK-------DLTPGVSVGPILKKMGLRGSATGEVFFDDVR 227 (393)
T ss_pred EEEeEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEEEEeC-------CCCCCeeeccccCcCCcCCCCeeEEEECCee
Confidence 48999999999 999999999999943225678999999998 7 599999763 2356777876
Q ss_pred ---------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhH
Q psy1771 70 ---------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLF 140 (217)
Q Consensus 70 ---------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la 140 (217)
++.||..++..++.+|+.+++.++|+++++++.+++|+++|++|+ + |++++|.+|++|+
T Consensus 228 vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg--~----------~i~~~~~vq~~la 295 (393)
T COG1960 228 VPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFG--R----------PIADFQLVQFKLA 295 (393)
T ss_pred ccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC--C----------chhhcHHHHHHHH
Confidence 468999999999999999999999999999999999999999999 9 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 141 PHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 141 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+|.++++++|++++++++..+. +......++++|+++++.+.++++.++|++||.||++
T Consensus 296 ~~~~~~~a~r~~~~~aa~~~~~------------------~~~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~ 354 (393)
T COG1960 296 DMAAELEAARLLVLRAAELADA------------------GDDAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTE 354 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 9999999999999997766541 1122288999999999999999999999999999974
No 16
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.96 E-value=2.8e-29 Score=229.42 Aligned_cols=176 Identities=24% Similarity=0.263 Sum_probs=149.9
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCC-----CCceeeeEEEEeeeCCCCCCCCCCceeeCCCC-------ceeccCC
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPD-----SVDHGLHAFLVPIRDPKTLLPYPGVTVGDLEG-------TYTSPFR 68 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~-----~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~~-------~~~~~~~ 68 (217)
+|||+|+|||+ ++.||+++|.+++.+++ +++.|+++||||+ +.|||++.+... +.++.|+
T Consensus 230 vLNG~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~-------d~pGV~ig~~~~~lG~~~~~g~v~fd 301 (774)
T PRK13026 230 RLTWDKRYITL-APVATVLGLAFKLRDPDGLLGDKKELGITCALIPT-------DHPGVEIGRRHNPLGMAFMNGTTRGK 301 (774)
T ss_pred EEEEEEEeecC-ccccCEEEEEEEeeCccccccCCCCCceEEEEEEC-------CCCCeEeeccccccccCcccceEEEe
Confidence 48999999999 99999998888753443 2457899999998 899999976321 2344455
Q ss_pred C--------------CCchhHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhH
Q psy1771 69 D--------------PGKRFGSSLGALSTGR-VSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYE 133 (217)
Q Consensus 69 ~--------------~~~g~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~ 133 (217)
| +|+||..++..++.+| +.+++.++|+++.+++.+++|+++|++|| + ||+++|
T Consensus 302 DV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG--~----------pIg~fQ 369 (774)
T PRK13026 302 DVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFG--M----------PIGQFE 369 (774)
T ss_pred eeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C----------CccccH
Confidence 4 2679999999999999 89999999999999999999999999999 9 999999
Q ss_pred HHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q psy1771 134 LLQWRLFPHLA---AVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREAC 210 (217)
Q Consensus 134 ~vq~~la~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~ 210 (217)
.||++|++|.+ .++++|.+++++++ .+......++++|+++++.+.++++.++|+|
T Consensus 370 ~Vq~~LAdma~~~y~lEaaR~l~~~a~D---------------------~G~~~~~~aA~AK~~atE~a~~va~~AmQIh 428 (774)
T PRK13026 370 GVQEALARIAGNTYLLEAARRLTTTGLD---------------------LGVKPSVVTAIAKYHMTELARDVVNDAMDIH 428 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 78999999887531 1223457889999999999999999999999
Q ss_pred cCCCCCC
Q psy1771 211 GGHGYLK 217 (217)
Q Consensus 211 G~~g~~~ 217 (217)
||.||++
T Consensus 429 GG~Gy~~ 435 (774)
T PRK13026 429 AGKGIQL 435 (774)
T ss_pred chheeeC
Confidence 9999974
No 17
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.96 E-value=7.5e-29 Score=213.08 Aligned_cols=179 Identities=23% Similarity=0.251 Sum_probs=153.8
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|.|+|+ +.+||+++|++++.+.++.+.++++|+||+ +.||+++.+. .+++++.|+|
T Consensus 142 ~l~G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~~-------~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~V 213 (372)
T cd01160 142 VLNGSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVER-------GTPGFSRGRKLKKMGWKAQDTAELFFDDCRV 213 (372)
T ss_pred EEeeEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEeC-------CCCCeecCCccccccCCCCCeEEEEecceEc
Confidence 48999999999 899999999999843223456799999998 7899998662 3456777776
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
++.|+..+...+..+|+..++.++|+++++++.+++|+++|++|| + |+.++|.+|++|++
T Consensus 214 p~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g--~----------~i~~~q~vq~~la~ 281 (372)
T cd01160 214 PAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFG--K----------TLAQLQVVRHKIAE 281 (372)
T ss_pred cHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--c----------cHHhhHHHHHHHHH
Confidence 456887788889999999999999999999999999999999999 9 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|..++++++++++++++.++. +......++++|+++++.+.++++.++|++||.||++
T Consensus 282 ~~~~~~~a~~~~~~aa~~~~~------------------~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~ 339 (372)
T cd01160 282 LATKVAVTRAFLDNCAWRHEQ------------------GRLDVAEASMAKYWATELQNRVAYECVQLHGGWGYMR 339 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecC
Confidence 999999999999998876541 1112456889999999999999999999999999974
No 18
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.96 E-value=1e-28 Score=212.63 Aligned_cols=178 Identities=24% Similarity=0.346 Sum_probs=154.2
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|+|+|+ +.+||+++|++++.+ .+..++++|+||+ +.|||++.+. .+++++.|+|
T Consensus 144 ~l~G~k~~vs~-~~~ad~~~v~a~~~~--~~~~~~~~~lv~~-------~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~V 213 (375)
T cd01162 144 VLNGSKAFISG-AGDSDVYVVMARTGG--EGPKGISCFVVEK-------GTPGLSFGANEKKMGWNAQPTRAVIFEDCRV 213 (375)
T ss_pred EEEEEEEEecC-CCCCCEEEEEEEecC--CCCCceEEEEEeC-------CCCCeecCCcccccCCCCCCeeEEEECceEe
Confidence 48999999999 899999999999842 2346688999998 7899998763 3456777876
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
++.|+......+...|+..++.++|.++++++.+++|+++|++|| + |++++|.+|+++++
T Consensus 214 p~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg--~----------~l~~~~~vq~~la~ 281 (375)
T cd01162 214 PVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFG--K----------PLADFQALQFKLAD 281 (375)
T ss_pred cHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--c----------cHHhhHHHHHHHHH
Confidence 356887777888999999999999999999999999999999999 9 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|.+++++++++++++++.+++ ..+.....++++|+++++.+.++++.++|++||.||++
T Consensus 282 ~~~~l~~a~~~~~~a~~~~~~-----------------~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~ 340 (375)
T cd01162 282 MATELVASRLMVRRAASALDR-----------------GDPDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLK 340 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-----------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999887652 01123457889999999999999999999999999974
No 19
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=1e-28 Score=212.97 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=152.1
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeC-------CCCceeccCCC----
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGD-------LEGTYTSPFRD---- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~-------~~~~~~~~~~~---- 69 (217)
+|||+|+|||+ +.+|||++|+++++ ++++..++++|+||+ +.||+++.+ ..++.++.|+|
T Consensus 148 ~lnG~K~fis~-~~~ad~~~v~a~~~-~~~~~~~~~~~lv~~-------~~~gv~~~~~~~~G~r~~~~~~v~f~~v~Vp 218 (380)
T PRK03354 148 YLNGSKCFITS-SAYTPYIVVMARDG-ASPDKPVYTEWFVDM-------SKPGIKVTKLEKLGLRMDSCCEITFDDVELD 218 (380)
T ss_pred EEeeEEEEEcC-CCcCCEEEEEEEcC-CCCCCCceeEEEEEC-------CCCceEeccccccCCCCCCeEEEEEccEEec
Confidence 48999999999 89999999999983 333345688999998 789998864 23466788876
Q ss_pred -------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 70 -------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 70 -------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
+++|+......++..|+..++.++|+++++++.+++|+++|++|| + |++++|.+|++|++|
T Consensus 219 ~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg--~----------~i~~~q~vq~~la~~ 286 (380)
T PRK03354 219 EKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFG--E----------AIGRFQLIQEKFAHM 286 (380)
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--c----------cHHHhHHHHHHHHHH
Confidence 456787777778889999999999999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
.++++++|++++++++.++. +.......+++|+++++.+.++++.++|++||.||++
T Consensus 287 ~~~~~aar~l~~~aa~~~~~------------------~~~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~ 343 (380)
T PRK03354 287 AIKLNSMKNMLYEAAWKADN------------------GTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAG 343 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhC------------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecC
Confidence 99999999999998876541 1122456789999999999999999999999999974
No 20
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.96 E-value=2.3e-28 Score=221.03 Aligned_cols=211 Identities=21% Similarity=0.157 Sum_probs=160.4
Q ss_pred CCcceeeeccCCCCCC----cEEEEEEEeeeCCCCceeeeEEEEeeeCCC-CC--CCCCCceeeC--------CCCceec
Q psy1771 1 MGTVLQWIVYKLGKCA----THAIVFARLITPDSVDHGLHAFLVPIRDPK-TL--LPYPGVTVGD--------LEGTYTS 65 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A----~~~~v~ar~~~~~~~~~~l~~flVp~~~~~-~~--~~~~Gv~i~~--------~~~~~~~ 65 (217)
+|||+|+|||+ ++++ ++++|+||++++.++.+|+++||||++.++ ++ ...+||++.+ ...++++
T Consensus 212 ~L~G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l 290 (622)
T PTZ00456 212 KITGTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQL 290 (622)
T ss_pred EEeeEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEE
Confidence 48999999999 8873 588999999533345789999999985432 12 2346787754 2356788
Q ss_pred cCCC--------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHH
Q psy1771 66 PFRD--------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQW 137 (217)
Q Consensus 66 ~~~~--------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~ 137 (217)
.|++ +++|+..++..++..|+.+++.++|+++++++.+++|+++|++|++..+..+.+....||+++|.||+
T Consensus 291 ~fd~~~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~ 370 (622)
T PTZ00456 291 SFENSVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQ 370 (622)
T ss_pred EeeChhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHH
Confidence 8887 57799888999999999999999999999999999999999997521111111122349999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 138 RLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 138 ~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+|++|.+.++++|+++++++..+|..... .+ .............+++++|.++++.+.++++.++|+|||+||++
T Consensus 371 ~L~~~~a~~eaaral~~~aA~~~D~~~~~---~~--~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~ 445 (622)
T PTZ00456 371 NILFAKAVAEGGRALLLDVGRLLDIHAAA---KD--AATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIK 445 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc--hhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccC
Confidence 99999999999999999999887642100 00 00000011234578999999999999999999999999999975
No 21
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.96 E-value=1.6e-28 Score=212.19 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=151.5
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|.|+|+ +..|||++|+++++ ++ .++++|+||+ +.|||++.+. .++.++.|+|
T Consensus 156 ~lnG~K~~is~-~~~Ad~~lv~ar~~-~~---~~~~~flVp~-------~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~V 223 (386)
T cd01151 156 KLNGSKTWITN-SPIADVFVVWARND-ET---GKIRGFILER-------GMKGLSAPKIQGKFSLRASITGEIVMDNVFV 223 (386)
T ss_pred EEEEEEEeecC-CCcCCEEEEEEEEC-CC---CcEEEEEEcC-------CCCCeecCCCCCCcCCCCCceeEEEEccEEe
Confidence 48999999999 99999999999983 22 4588999998 7899998763 2456788876
Q ss_pred -------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 70 -------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 70 -------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
.+.|+..+...++..|+.+++.++|+++++++.+++|+++|++|| + |++++|.+|++|++|
T Consensus 224 p~~~~l~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g--~----------~i~~~q~vq~~la~~ 291 (386)
T cd01151 224 PEENLLPGAEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFG--R----------PLAAFQLVQKKLADM 291 (386)
T ss_pred CHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecC--C----------chhhhHHHHHHHHHH
Confidence 245777777888999999999999999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
.++++++|++++++++.++. +.......+++|.++++.+.++++.++|++||.||++
T Consensus 292 ~~~~eaar~l~~~a~~~~d~------------------~~~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~ 348 (386)
T cd01151 292 LTEIALGLLACLRVGRLKDQ------------------GKATPEQISLLKRNNCGKALEIARTAREMLGGNGISD 348 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhC------------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999877652 1122346789999999999999999999999999974
No 22
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.96 E-value=3.6e-28 Score=211.48 Aligned_cols=181 Identities=26% Similarity=0.342 Sum_probs=155.0
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeee--CCC-CceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLIT--PDS-VDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~--~~~-~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~ 69 (217)
+|||+|+|+|+ +.+|||++|+|++.+ +++ .+.++++|+||+ +.|||++.+. .+++++.|+|
T Consensus 170 ~l~G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~-------~~~gv~~~~~~~~~G~~g~~s~~v~~~~ 241 (409)
T cd01161 170 VLNGSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFIVER-------SFGGVTNGPPEKKMGIKGSNTAEVYFED 241 (409)
T ss_pred EEEeEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeC-------CCCCcccCCcccccCCCCCCceEEEecc
Confidence 48999999999 899999999999841 122 135789999998 7899998763 3456777776
Q ss_pred -----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHH
Q psy1771 70 -----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWR 138 (217)
Q Consensus 70 -----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~ 138 (217)
++.|+..+...++..|+.+++.++|+++++++.+++|+++|++|+ + |+.++|.+|++
T Consensus 242 v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg--~----------~l~~~q~vq~~ 309 (409)
T cd01161 242 VKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFG--K----------KIHEFGLIQEK 309 (409)
T ss_pred EEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCC--c----------cHHHhHHHHHH
Confidence 467888888899999999999999999999999999999999999 9 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 139 LFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 139 la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|+++.++++++|++++++++.+++ . ...+....++++|+++++.+.++++.++|++||.||++
T Consensus 310 la~~~~~~~aar~l~~~a~~~~d~-----------~-----~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~ 372 (409)
T cd01161 310 LANMAILQYATESMAYMTSGNMDR-----------G-----LKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMR 372 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 999999999999999999877652 0 00134567899999999999999999999999999974
No 23
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.96 E-value=3.8e-28 Score=210.99 Aligned_cols=178 Identities=19% Similarity=0.272 Sum_probs=153.9
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|.|+|+ +.+|||++|+|+++ +++++.++++|+||+ +.|||++.+. .+++++.|+|
T Consensus 172 ~lnG~K~~vs~-a~~ad~~~v~a~~~-~~~~~~~~~~~lVp~-------~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~V 242 (404)
T PLN02519 172 VLNGNKMWCTN-GPVAQTLVVYAKTD-VAAGSKGITAFIIEK-------GMPGFSTAQKLDKLGMRGSDTCELVFENCFV 242 (404)
T ss_pred EEEeEEEeecC-CCcCCEEEEEEEeC-CCCCCCeeEEEEEeC-------CCCCeeccCcccccCCCCCCeeEEEeCeEEe
Confidence 48999999999 99999999999983 344557899999998 7899998663 3457777876
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
++.|+......++..|+.+++.++|+++++++.+++|+++|.+|+ + |+.++|.+|++|++
T Consensus 243 p~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g--~----------pl~~~~~v~~~la~ 310 (404)
T PLN02519 243 PEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFG--R----------PIGEFQFIQGKLAD 310 (404)
T ss_pred cHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCC--c----------cHHHhHHHHHHHHH
Confidence 466777777788999999999999999999999999999999999 9 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|.+++++++++++++++.++. +.......+.+|+++++.+.++++.++|++||.||++
T Consensus 311 ~~~~l~aar~~~~~aa~~~~~------------------~~~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~ 368 (404)
T PLN02519 311 MYTSLQSSRSYVYSVARDCDN------------------GKVDRKDCAGVILCAAERATQVALQAIQCLGGNGYIN 368 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecC
Confidence 999999999999999877652 1112345677899999999999999999999999974
No 24
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.96 E-value=3.6e-28 Score=209.09 Aligned_cols=178 Identities=23% Similarity=0.317 Sum_probs=153.7
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|+|+|+ +.+|||++|+++++ ++++..++++|+||+ +.|||++.+. .++.++.|+|
T Consensus 146 ~l~G~k~~vs~-~~~a~~~lv~a~~~-~~~~~~~~~~~lv~~-------~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~V 216 (376)
T cd01156 146 VLNGSKMWITN-GPDADTLVVYAKTD-PSAGAHGITAFIVEK-------GMPGFSRAQKLDKLGMRGSNTCELVFEDCEV 216 (376)
T ss_pred EEEEEEEEecC-CCcCCEEEEEEEeC-CCCCCCceEEEEEcC-------CCCCeecCCccccccCCCCCceEEEeCceEe
Confidence 48999999999 89999999999984 344456789999998 7899988763 2456777776
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
++.|+..+...+...|+.+++.++|+++++++.+++|+++|++|| + |+.++|.+|+++++
T Consensus 217 p~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g--~----------~i~~~~~v~~~la~ 284 (376)
T cd01156 217 PEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFG--Q----------PIGEFQLVQGKLAD 284 (376)
T ss_pred cHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC--c----------chHHhHHHHHHHHH
Confidence 366787778889999999999999999999999999999999999 9 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|.++++++|++++++++.++. +.......+.+|+++++.+.++++.++|++||.||++
T Consensus 285 ~~~~l~aar~~~~~aa~~~d~------------------~~~~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~ 342 (376)
T cd01156 285 MYTRLNASRSYLYTVAKACDR------------------GNMDPKDAAGVILYAAEKATQVALDAIQILGGNGYIN 342 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999877651 1112345677899999999999999999999999974
No 25
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.96 E-value=1.1e-27 Score=207.48 Aligned_cols=180 Identities=19% Similarity=0.203 Sum_probs=153.4
Q ss_pred CCcceeeeccCCCCC--CcEEEEEEEeeeCC--CCceeeeEEEEeeeCCCCCCCCCCceeeCC----------CCceecc
Q psy1771 1 MGTVLQWIVYKLGKC--ATHAIVFARLITPD--SVDHGLHAFLVPIRDPKTLLPYPGVTVGDL----------EGTYTSP 66 (217)
Q Consensus 1 ~lnG~K~~is~~~~~--A~~~~v~ar~~~~~--~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~----------~~~~~~~ 66 (217)
+|||+|.|+|+ +.+ ++|++|+++++ ++ +++.++++|+||+ +.||+++.+. .+++++.
T Consensus 156 ~LnG~k~~vs~-~~~~~a~~~~v~a~~~-~~~~~~~~~~~~flVp~-------~~~Gv~i~~~~~~~G~r~~~t~s~~v~ 226 (394)
T cd01155 156 VINGRKWWSSG-AGDPRCKIAIVMGRTD-PDGAPRHRQQSMILVPM-------DTPGVTIIRPLSVFGYDDAPHGHAEIT 226 (394)
T ss_pred EEEEEEEEEcC-CCCCCCCEEEEEEEeC-CCcCCCCCceEEEEEeC-------CCCCeEeeccccccCCCCCCCCeeEEE
Confidence 48999999999 765 78999999983 23 2345789999998 8899999762 2346788
Q ss_pred CCC-----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHH
Q psy1771 67 FRD-----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELL 135 (217)
Q Consensus 67 ~~~-----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~v 135 (217)
|+| +++|+..+...++..|+..++.++|+++++++.+++|+++|++|| + |+.++|.+
T Consensus 227 f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg--~----------~i~~~q~v 294 (394)
T cd01155 227 FDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFG--K----------KLAQHGVV 294 (394)
T ss_pred EccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCC--C----------cHhhhHHH
Confidence 886 456888888888999999999999999999999999999999999 9 99999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q psy1771 136 QWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGY 215 (217)
Q Consensus 136 q~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~ 215 (217)
|++|++|.++++++|++++++++.+++ . .........+++|+++++.+.++++.++|++||.||
T Consensus 295 q~~la~~~~~l~aar~l~~~aa~~~~~-----------~-----~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~ 358 (394)
T cd01155 295 AHWIAKSRIEIEQARLLVLKAAHMIDT-----------V-----GNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGV 358 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-----------C-----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCcee
Confidence 999999999999999999999887652 0 001234678999999999999999999999999999
Q ss_pred CC
Q psy1771 216 LK 217 (217)
Q Consensus 216 ~~ 217 (217)
++
T Consensus 359 ~~ 360 (394)
T cd01155 359 SQ 360 (394)
T ss_pred cC
Confidence 74
No 26
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.96 E-value=8.2e-28 Score=209.29 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=150.4
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|+|||+ +..|||++|+|++ + .++++|+||+ +.|||++.+. .++.++.|+|
T Consensus 182 ~L~G~K~~vs~-a~~Ad~~lv~a~~-~-----~~~~~flVp~-------~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~V 247 (410)
T PTZ00461 182 VLNGSKIWITN-GTVADVFLIYAKV-D-----GKITAFVVER-------GTKGFTQGPKIDKCGMRASHMCQLFFEDVVV 247 (410)
T ss_pred EEEeEEEeECC-CccCCEEEEEEEe-C-----CceEEEEEeC-------CCCCeecCCCCcccCCCCCceEEEEEcceec
Confidence 48999999999 9999999999997 2 2378999998 7899999763 2456778876
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
++.|+......++..|+..++.++|+++++++.+++|+++|++|| + |++++|.+|++|++
T Consensus 248 p~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg--~----------~i~~~q~vq~~la~ 315 (410)
T PTZ00461 248 PAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFG--K----------PISNFGQIQRYIAE 315 (410)
T ss_pred CHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecC--c----------CHHhhHHHHHHHHH
Confidence 466777777888999999999999999999999999999999999 9 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
|+++++++|++++++++.++. +......++++|.++++.+.++++.++|++||.||++
T Consensus 316 ~~~~l~aar~l~~~aa~~~~~------------------~~~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~ 373 (410)
T PTZ00461 316 GYADTEAAKALVYSVSHNVHP------------------GNKNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSR 373 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhcC------------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 999999999999998876431 1122356788999999999999999999999999974
No 27
>PLN02443 acyl-coenzyme A oxidase
Probab=99.96 E-value=2.5e-27 Score=215.38 Aligned_cols=203 Identities=39% Similarity=0.613 Sum_probs=160.2
Q ss_pred cceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC-----------CCceeccCCCC-
Q psy1771 3 TVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL-----------EGTYTSPFRDP- 70 (217)
Q Consensus 3 nG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~-----------~~~~~~~~~~~- 70 (217)
||+|+||++++..|++++|+|++. .++++.|+++||||.||.+++.+.|||++++. .+++.+.|+|.
T Consensus 170 ~g~K~wig~~~~~A~~~vV~Arl~-~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~Vr 248 (664)
T PLN02443 170 TSSKWWPGGLGKVSTHAVVYARLI-TNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVR 248 (664)
T ss_pred CEEEEeecCCcccCCEEEEEEEEC-CCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEE
Confidence 599999999447899999999983 45667899999999999989999999999752 23556777761
Q ss_pred ----------------Cchh------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCc
Q psy1771 71 ----------------GKRF------GSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELP 128 (217)
Q Consensus 71 ----------------~~g~------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~ 128 (217)
|..+ ......+..+|+.+++.++|++++|++++++|+..|++|| .+. ...+.+
T Consensus 249 VP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg--~~~---~~~e~q 323 (664)
T PLN02443 249 IPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFG--SQD---GGPETQ 323 (664)
T ss_pred ECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCC--CCC---Cccchh
Confidence 1111 1334678889999999999999999999999999999999 510 011346
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy1771 129 VLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECRE 208 (217)
Q Consensus 129 l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~ 208 (217)
+++++..|++|+++.+.+++++.+.+++++.+++........+ . ....+....++++|.++++.+.+++++|+|
T Consensus 324 ii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~--~----~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq 397 (664)
T PLN02443 324 VIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEAND--F----STLPEAHACTAGLKSLTTSATADGIEECRK 397 (664)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--c----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888999999999999999999999988875433221111 0 112346677999999999999999999999
Q ss_pred HhcCCCCCC
Q psy1771 209 ACGGHGYLK 217 (217)
Q Consensus 209 ~~G~~g~~~ 217 (217)
+|||+||+.
T Consensus 398 ~cGG~Gy~~ 406 (664)
T PLN02443 398 LCGGHGYLC 406 (664)
T ss_pred HccCccccc
Confidence 999999974
No 28
>PLN02526 acyl-coenzyme A oxidase
Probab=99.96 E-value=2e-27 Score=206.93 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=149.8
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCCC--------CceeccCCCC--
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE--------GTYTSPFRDP-- 70 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~--------~~~~~~~~~~-- 70 (217)
+|||+|.||++ +.+|||++|++++. ++ .++++|+||+ +.|||++.+.+ ++.++.|+|.
T Consensus 172 ~lnG~K~~vs~-~~~Ad~~lv~a~~~-~~---~~~~~flV~~-------~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~V 239 (412)
T PLN02526 172 ILNGQKRWIGN-STFADVLVIFARNT-TT---NQINGFIVKK-------GAPGLKATKIENKIGLRMVQNGDIVLKDVFV 239 (412)
T ss_pred EEEEEEeeecC-CCccCEEEEEEEeC-CC---CCeEEEEEcC-------CCCCeEcCCCCCccCcCCCCeeEEEEeeEEE
Confidence 48999999999 99999999999983 22 3588999998 78999987632 4577888871
Q ss_pred --------CchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 71 --------GKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 71 --------~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
..++..+...++.+|+..++.++|+++++++.+++|+++|.+|| + |+.++|.+|+++++|
T Consensus 240 p~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg--~----------~i~~~q~vq~~la~~ 307 (412)
T PLN02526 240 PDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG--A----------PLAAFQINQEKLVRM 307 (412)
T ss_pred CHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCC--C----------chhhhHHHHHHHHHH
Confidence 12555666788999999999999999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
.++++++|++++++++.++. +......++++|+++++.+.++++.++|+|||.||++
T Consensus 308 ~~~l~aar~~~~~aa~~~d~------------------~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~ 364 (412)
T PLN02526 308 LGNIQAMFLVGWRLCKLYES------------------GKMTPGHASLGKAWITKKARETVALGRELLGGNGILA 364 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHC------------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 99999999999998877652 1112345789999999999999999999999999974
No 29
>KOG0137|consensus
Probab=99.95 E-value=1.7e-28 Score=212.04 Aligned_cols=181 Identities=24% Similarity=0.329 Sum_probs=159.9
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCC-C--CceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPD-S--VDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~-~--~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~ 69 (217)
+|||.|.||+| ++.||+++|+|++..++ + ...++++|||++ +..|++-+++ ..+.++.|++
T Consensus 224 ~LNG~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver-------~~~Gvt~G~~e~k~GiKgsnt~~v~f~~ 295 (634)
T KOG0137|consen 224 VLNGSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFLVER-------DFGGVTNGPPEKKMGIKGSNTAEVHFEG 295 (634)
T ss_pred EEcCeeEEEec-CccceeeeeeeccccCCCCccccCceEEEEEec-------cccCccCCCchhhhcccccceeeeeecc
Confidence 58999999999 99999999999996322 1 357799999997 7788887763 3456677764
Q ss_pred -----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHH
Q psy1771 70 -----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWR 138 (217)
Q Consensus 70 -----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~ 138 (217)
+|.|++.++++++.+|+.+++.++|+++++++.+.+|+..|.|++ + +|.++..+|.+
T Consensus 296 ~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g--~----------~L~~~~l~q~k 363 (634)
T KOG0137|consen 296 VKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFG--K----------KLHDFGLIQEK 363 (634)
T ss_pred ccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecC--c----------chhhhhhHHHH
Confidence 799999999999999999999999999999999999999999999 9 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 139 LFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 139 la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+++|...+++.+.++|..+..+|+. ...+..+++++.|++++|.++.++++++|++||+||++
T Consensus 364 ~~~m~~~~Ya~ESm~yl~sg~~D~~----------------~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~ 426 (634)
T KOG0137|consen 364 VAEMASKVYATESMLYLLSGLMDEV----------------GAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMR 426 (634)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc----------------cceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccc
Confidence 9999999999999999977655420 23578899999999999999999999999999999985
No 30
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.95 E-value=4.8e-27 Score=201.79 Aligned_cols=178 Identities=27% Similarity=0.378 Sum_probs=154.0
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
.|||+|.|+|+ +.+|||++|.+++. ++++..++++|+||+ +.|||++.+. .++.++.|+|
T Consensus 143 ~l~G~k~~vsg-~~~ad~~lv~a~~~-~~~~~~~~~~~lvp~-------~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~V 213 (373)
T cd01158 143 VLNGSKMWITN-GGEADFYIVFAVTD-PSKGYRGITAFIVER-------DTPGLSVGKKEDKLGIRGSSTTELIFEDVRV 213 (373)
T ss_pred EEeeEEEEEcC-CCcCCEEEEEEEcC-CCCCCCceEEEEEcC-------CCCCeecCCcccccccCCCCceEEEeCcEEe
Confidence 48999999999 89999999999973 344456789999998 7899999863 3456777876
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
++.|+......++..|+.+++.++|+++++++.+++|+++|.+|+ . |+.++|.+|+++++
T Consensus 214 p~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g--~----------~~~~~~~v~~~la~ 281 (373)
T cd01158 214 PKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFG--K----------PIADFQGIQFKLAD 281 (373)
T ss_pred cHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccC--C----------cHHHhHHHHHHHHH
Confidence 456887777888899999999999999999999999999999999 8 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+.+.+++++++++++++.++. +.......+++|+++++.+.++++.+++++||.||++
T Consensus 282 ~~~~l~aa~~~~~~aa~~~~~------------------~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~ 339 (373)
T cd01158 282 MATEIEAARLLTYKAARLKDN------------------GEPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTK 339 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCC
Confidence 999999999999998876541 1123456789999999999999999999999999974
No 31
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.95 E-value=2e-27 Score=205.98 Aligned_cols=177 Identities=19% Similarity=0.133 Sum_probs=146.7
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCC-CCceeeeEEEEeeeCCCCCCCCCCceeeCC------CCceeccCCC----
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPD-SVDHGLHAFLVPIRDPKTLLPYPGVTVGDL------EGTYTSPFRD---- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~-~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~------~~~~~~~~~~---- 69 (217)
+|||+|.||++ +.+||+++|+++++ ++ ++..++++|+||+ +.|||++.+. ....++.|+|
T Consensus 151 ~LnG~K~~vt~-a~~Ad~~lv~a~~~-~~~~~~~g~~~flV~~-------~~~Gv~~~~~~~~~~~~~~~~v~f~~v~Vp 221 (395)
T TIGR03204 151 IINGQKTWTTL-AQHADWIFCLCRTD-PTAKKQMGISFILVDM-------KSKGITVRPIQTIDGGVEVNEVFFDDVEVP 221 (395)
T ss_pred EEeeEEEeecC-CccCCeEEEEEEeC-CCCCCCCCeEEEEEeC-------CCCCeEecChhhccCCCceeEEEEcceEEc
Confidence 48999999999 99999999999983 32 2356789999998 8899999652 2456677776
Q ss_pred -------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 70 -------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 70 -------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
+++|+...+..++..|+..++ +|+++++++.+++|+++|++|| + ||+++|.+|++|++|
T Consensus 222 ~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg--~----------~i~~~q~vq~~la~~ 287 (395)
T TIGR03204 222 YENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGG--K----------PVIEDAKFREKLAAV 287 (395)
T ss_pred HHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC--C----------ccccCHHHHHHHHHH
Confidence 357888888889999998876 8999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHH----------hcC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREA----------CGG 212 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~----------~G~ 212 (217)
.++++++|+++++++..... . +.. .....++++|+++++.+.++++.++|+ |||
T Consensus 288 ~~~~~aar~l~~~aa~~~~~-----------~----~~~-~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg 351 (395)
T TIGR03204 288 EIELKALELTQLRVVADEGK-----------H----GKG-KPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGD 351 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------c----CCC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 99999999999998742110 0 000 113479999999999999999999995 778
Q ss_pred CCCC
Q psy1771 213 HGYL 216 (217)
Q Consensus 213 ~g~~ 216 (217)
.||+
T Consensus 352 ~G~~ 355 (395)
T TIGR03204 352 DGSN 355 (395)
T ss_pred cccc
Confidence 8886
No 32
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.95 E-value=9.1e-27 Score=196.52 Aligned_cols=180 Identities=29% Similarity=0.376 Sum_probs=154.4
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCCC--------CceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE--------GTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~--------~~~~~~~~~--- 69 (217)
+|||+|+|+|+ +.+|||++|++++.+++++..++.+|+||+ +.|||++.+.+ +++++.|+|
T Consensus 99 ~l~G~k~~~s~-~~~ad~~lv~a~~~~~~~~~~~~~~~lvp~-------~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~V 170 (327)
T cd00567 99 VLNGRKIFISN-GGDADLFIVLARTDEEGPGHRGISAFLVPA-------DTPGVTVGRIWDKMGMRGSGTGELVFDDVRV 170 (327)
T ss_pred EEEEEEEEecC-CccCCEEEEEEEeCCCCCCCCceEEEEEeC-------CCCCeEeccccccccCCCCceEEEEECCEEe
Confidence 48999999999 899999999999843222456788999998 78999998732 356677776
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFP 141 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~ 141 (217)
++.++......+..+++..++.++|+++++++.+++|+++|.+|+ . |+.++|.+|++|++
T Consensus 171 p~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g--~----------~~~~~~~vq~~la~ 238 (327)
T cd00567 171 PEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFG--K----------PLAEFQAVQFKLAD 238 (327)
T ss_pred cHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--C----------ccccchHHHHHHHH
Confidence 345666677888999999999999999999999999999999999 8 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 142 HLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+..++++++++++++++.++. . .......++++|.++++.+.++++.+++++||.||++
T Consensus 239 ~~~~~~~~~~~~~~a~~~~~~-----------~------~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~ 297 (327)
T cd00567 239 MAAELEAARLLLYRAAWLLDQ-----------G------PDEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSR 297 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-----------C------CCcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccC
Confidence 999999999999999887652 0 1125678899999999999999999999999999974
No 33
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.95 E-value=1.8e-26 Score=200.67 Aligned_cols=198 Identities=20% Similarity=0.187 Sum_probs=153.9
Q ss_pred CCcceeeeccCCCCCC----cEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCC
Q psy1771 1 MGTVLQWIVYKLGKCA----THAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFR 68 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A----~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~ 68 (217)
+|||+|+|+|+ +.+| ++++|++++.++.+++.++++|+||++.++ ...|||++.+. .+++++.|+
T Consensus 148 ~l~G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~--~~~~gv~i~~~~~~~G~r~t~s~~v~f~ 224 (407)
T cd01153 148 RINGVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDD--GERNGVTVARIEEKMGLHGSPTCELVFD 224 (407)
T ss_pred EEeeEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcC--CCCCCeEeccchhccCCCCCCeEEEEEc
Confidence 48999999999 8886 578899998422234567899999982210 01389999763 345677777
Q ss_pred C--------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCc--------cchh
Q psy1771 69 D--------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELP--------VLEY 132 (217)
Q Consensus 69 ~--------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~--------l~~~ 132 (217)
| ++.|+..++..++.+|+.+++.++|+++++++.+++|+++|.+|+ + | +.++
T Consensus 225 ~v~Vp~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg--~----------~i~~~~~~~~~~~ 292 (407)
T cd01153 225 NAKGELIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGG--D----------LIKAAPAVTIIHH 292 (407)
T ss_pred CEEEeeeCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecC--C----------cCccccccccccC
Confidence 6 477888888899999999999999999999999999999999999 7 6 8899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q psy1771 133 ELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGG 212 (217)
Q Consensus 133 ~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~ 212 (217)
|.+|++|++|.+++++++++++++++.++..... .. ..+............++++|+++++.+.++++.+++++||
T Consensus 293 ~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg 368 (407)
T cd01153 293 PDVRRSLMTQKAYAEGSRALDLYTATVQDLAERK---AT-EGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGG 368 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---cc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999887631000 00 0000000011235678899999999999999999999999
Q ss_pred CCCCC
Q psy1771 213 HGYLK 217 (217)
Q Consensus 213 ~g~~~ 217 (217)
.||.+
T Consensus 369 ~g~~~ 373 (407)
T cd01153 369 SGYTR 373 (407)
T ss_pred ceecC
Confidence 99974
No 34
>PLN02876 acyl-CoA dehydrogenase
Probab=99.95 E-value=9.9e-27 Score=217.58 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=154.1
Q ss_pred CCcceeeeccCCC--CCCcEEEEEEEeeeCC-CCceeeeEEEEeeeCCCCCCCCCCceeeCC----------CCceeccC
Q psy1771 1 MGTVLQWIVYKLG--KCATHAIVFARLITPD-SVDHGLHAFLVPIRDPKTLLPYPGVTVGDL----------EGTYTSPF 67 (217)
Q Consensus 1 ~lnG~K~~is~~~--~~A~~~~v~ar~~~~~-~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~----------~~~~~~~~ 67 (217)
+|||+|+|||+ + ..||+++|++++ +++ +++.++++|+||+ +.|||++.+. .+++++.|
T Consensus 581 vLnG~K~~vtg-a~~~~ad~~lv~ar~-~~~~~~~~~~s~flV~~-------~~pGv~i~~~~~~~G~r~~~~~~~~v~f 651 (822)
T PLN02876 581 VINGTKWWTSG-AMDPRCRVLIVMGKT-DFNAPKHKQQSMILVDI-------QTPGVQIKRPLLVFGFDDAPHGHAEISF 651 (822)
T ss_pred EEEeEEEEecC-CCCCCCCEEEEEEec-CCCCCCCCcceEEEEeC-------CCCCceeecccceeccCCCCCCeeEEEE
Confidence 48999999999 7 469999999998 333 3346789999998 8899999752 13567888
Q ss_pred CC-----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHH
Q psy1771 68 RD-----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQ 136 (217)
Q Consensus 68 ~~-----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq 136 (217)
+| +++|+..+...++.+|+..++.++|++++|++.+++|+++|++|| + |+.++|.+|
T Consensus 652 d~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg--~----------~i~~~q~vq 719 (822)
T PLN02876 652 ENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFG--K----------LIAQHGSFL 719 (822)
T ss_pred cceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--C----------chhhCHHHH
Confidence 87 356888888889999999999999999999999999999999999 9 999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q psy1771 137 WRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYL 216 (217)
Q Consensus 137 ~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~ 216 (217)
++|++|.++++++|++++++++.++.. . .......++++|+++++.+.++++.++|++||.||+
T Consensus 720 ~~la~~~~~leaar~l~~~aa~~~d~~-----------~-----~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~ 783 (822)
T PLN02876 720 SDLAKCRVELEQTRLLVLEAADQLDRL-----------G-----NKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVS 783 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-----------C-----CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 999999999999999999998876520 0 012346799999999999999999999999999997
Q ss_pred C
Q psy1771 217 K 217 (217)
Q Consensus 217 ~ 217 (217)
+
T Consensus 784 ~ 784 (822)
T PLN02876 784 S 784 (822)
T ss_pred C
Confidence 4
No 35
>KOG0135|consensus
Probab=99.94 E-value=2e-26 Score=197.81 Aligned_cols=199 Identities=51% Similarity=0.830 Sum_probs=178.4
Q ss_pred ceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeC-------------------------
Q psy1771 4 VLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGD------------------------- 58 (217)
Q Consensus 4 G~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~------------------------- 58 (217)
..|+||.|++.+|++.+|+|++.. .+...|++.|+||.||++++...|||+|.+
T Consensus 196 A~K~WiGn~a~~athavvfa~L~~-~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRe 274 (661)
T KOG0135|consen 196 AIKCWIGNAAKHATHAVVFAQLHV-PGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRE 274 (661)
T ss_pred HHHHHhccccccceEEEEEEEeee-cCccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchH
Confidence 469999999999999999999965 578899999999999999999999999998
Q ss_pred ----------CCCceeccCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCc
Q psy1771 59 ----------LEGTYTSPFRDPGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELP 128 (217)
Q Consensus 59 ----------~~~~~~~~~~~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~ 128 (217)
+++.+..+|.++++.+...+..|..+|+.++..++|.++.++.+|++|+-.|+||||.+ +.+++|
T Consensus 275 nLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~-----~geEv~ 349 (661)
T KOG0135|consen 275 NLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTK-----NGEEVP 349 (661)
T ss_pred HHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCC-----CCCcce
Confidence 23445566677888998899999999999999999999999999999999999999765 458999
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy1771 129 VLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECRE 208 (217)
Q Consensus 129 l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~ 208 (217)
|.|+|.-|.||-.+.+..++.+-...++...+++......... ...++..+++-.|.+++|...+.+++|+|
T Consensus 350 iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~--------n~keiHALsSg~K~~~TW~~~~~LqecRE 421 (661)
T KOG0135|consen 350 ILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGV--------NSKEIHALSSGLKPVATWHNMRALQECRE 421 (661)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--------chhHHHHHHhccchhhhHhhHHHHHHHHH
Confidence 9999999999999999999999999999998887666544333 35789999999999999999999999999
Q ss_pred HhcCCCCC
Q psy1771 209 ACGGHGYL 216 (217)
Q Consensus 209 ~~G~~g~~ 216 (217)
.|||+||+
T Consensus 422 AcGGhGYl 429 (661)
T KOG0135|consen 422 ACGGHGYL 429 (661)
T ss_pred HhccchHH
Confidence 99999995
No 36
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.94 E-value=5.8e-26 Score=195.16 Aligned_cols=186 Identities=17% Similarity=0.071 Sum_probs=148.4
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCCC--
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRDP-- 70 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~~-- 70 (217)
+|||+|.|||+ +.+|||++|++++.+ +++..++++|+||+ + ||++.+. .+++++.|+|.
T Consensus 121 ~lnG~K~~it~-~~~ad~~~v~a~~~~-~~~~~~~~~~lV~~-------~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~V 189 (370)
T cd01159 121 RVSGTWPFASG-CDHADWILVGAIVED-DDGGPLPRAFVVPR-------A--EYEIVDTWHVVGLRGTGSNTVVVDDVFV 189 (370)
T ss_pred EEeccccCccC-CCcCceeEeeeECCC-CCCCCcceEEEEEh-------H--HCEEecccccccccccCCCcEEEcceEc
Confidence 48999999999 999999999999843 33457899999997 5 8888763 34567777761
Q ss_pred ------C---------chhH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCC-CCCCCCCCCCCCccch
Q psy1771 71 ------G---------KRFG---SSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGP-PKQGSDSEPEELPVLE 131 (217)
Q Consensus 71 ------~---------~g~~---~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~-~~~~~~~~~~~~~l~~ 131 (217)
+ .++. .......++|+.+++.++|+++++++.+++|+++|.++++ ++ |+++
T Consensus 190 p~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~----------~i~~ 259 (370)
T cd01159 190 PEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQYGAAV----------KMAE 259 (370)
T ss_pred CccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCcc----------cccc
Confidence 0 1211 1233566789999999999999999999999999998742 26 8999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q psy1771 132 YELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACG 211 (217)
Q Consensus 132 ~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G 211 (217)
+|.+|++|++|.++++++|++++++++.++....... .........++++|+++++.+.++++.++|++|
T Consensus 260 ~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~----------~~~~~~~~~~~~aK~~~~e~~~~~~~~a~~~~G 329 (370)
T cd01159 260 APITQLRLAEAAAELDAARAFLERATRDLWAHALAGG----------PIDVEERARIRRDAAYAAKLSAEAVDRLFHAAG 329 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998875321100 011344567889999999999999999999999
Q ss_pred CCCCCC
Q psy1771 212 GHGYLK 217 (217)
Q Consensus 212 ~~g~~~ 217 (217)
|.||.+
T Consensus 330 g~g~~~ 335 (370)
T cd01159 330 GSALYT 335 (370)
T ss_pred chhccc
Confidence 999974
No 37
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.94 E-value=8.2e-26 Score=194.65 Aligned_cols=189 Identities=15% Similarity=0.033 Sum_probs=147.2
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCC--------CCceeccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDL--------EGTYTSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~--------~~~~~~~~~~--- 69 (217)
+|||+|.|||+ +.+|||++|+++++ + .++++|+||+ +.|||++.+. .++.++.|+|
T Consensus 132 ~lnG~K~~is~-a~~Ad~~~v~a~~~--~---~~~~~~lV~~-------~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~V 198 (377)
T cd01163 132 VLNGKKFYSTG-ALFSDWVTVSALDE--E---GKLVFAAVPT-------DRPGITVVDDWDGFGQRLTASGTVTFDNVRV 198 (377)
T ss_pred EEeceEEeecC-CccceEEEEEEEcC--C---CcEEEEEEeC-------CCCceeecCCcccccCccCCcceEEEeeEEE
Confidence 48999999999 99999999999972 2 2467899998 8899999762 3456777776
Q ss_pred --------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce-ecCCCCCCCCCCCCCCccchhHHHHHHhH
Q psy1771 70 --------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRR-QFGPPKQGSDSEPEELPVLEYELLQWRLF 140 (217)
Q Consensus 70 --------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~-~~~~~~~~~~~~~~~~~l~~~~~vq~~la 140 (217)
++.++. ....+..+|+..++.++|+++++++.+++|+++|+ +++ + ....+++++|.+|++|+
T Consensus 199 p~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g--~------~~~~~~~~~~~v~~~la 269 (377)
T cd01163 199 EPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWI--H------SGAESARDDPYVQQVVG 269 (377)
T ss_pred CHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--c------CCccccccCcHHHHHHH
Confidence 234443 22345677999999999999999999999999995 666 3 00015789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 141 PHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 141 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+|.++++++|++++++++.+++...... .............++++|+++++.+.++++.++|++||.||++
T Consensus 270 ~~~~~l~aar~~~~~aa~~~d~~~~~~~------~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~ 340 (377)
T cd01163 270 DLAARLHAAEALVLQAARALDAAAAAGT------ALTAEARGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAR 340 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcc
Confidence 9999999999999999998875221100 0001112345678899999999999999999999999999974
No 38
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.94 E-value=4.8e-26 Score=196.36 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=141.5
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCC-CCceeeeEEEEeeeCCCCCCCCCCceeeCC------CCceeccCCC----
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPD-SVDHGLHAFLVPIRDPKTLLPYPGVTVGDL------EGTYTSPFRD---- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~-~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~------~~~~~~~~~~---- 69 (217)
+|||+|.|+|+ +++||+++|++++. ++ +++.++++|+||+ +.||+++.+. .+++++.|+|
T Consensus 147 ~L~G~K~~it~-~~~ad~~lv~a~~~-~~~~~~~~~~~~lVp~-------~~~Gv~~~~~~~~~g~~~~~~l~f~~v~Vp 217 (380)
T cd01152 147 VVNGQKIWTSG-AHYADWAWLLVRTD-PEAPKHRGISILLVDM-------DSPGVTVRPIRSINGGEFFNEVFLDDVRVP 217 (380)
T ss_pred EEecEEEEEcC-ccccCEEEEEEEeC-CCccCcCCeEEEEEeC-------CCCceEeeehhhccCCCCcceEEecCcCcc
Confidence 48999999999 89999999999983 33 2345789999998 7899999773 2456677776
Q ss_pred -------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 70 -------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 70 -------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
++.|+..+...++..|+.+++.+.|+ ++.+++|+++|.++| + ||+++|.+|++|++|
T Consensus 218 ~~~~lg~~~~g~~~~~~~l~~~r~~~~~~~~~~----~~~a~~~a~~r~~~g--~----------~l~~~~~vq~~la~~ 281 (380)
T cd01152 218 DANRVGEVNDGWKVAMTTLNFERVSIGGSAATF----FELLLARLLLLTRDG--R----------PLIDDPLVRQRLARL 281 (380)
T ss_pred hhcccCCCCchHHHHHHHHHhcccccchhhhHH----HHHHHHHHHHHHhcC--C----------CcccCHHHHHHHHHH
Confidence 35678777777888888766555444 456677888888888 8 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
.+++++++++++++++.+++ +......++++|+++++.+.++++.++|++||.||.+
T Consensus 282 ~~~l~~a~~l~~~aa~~~~~------------------~~~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~ 338 (380)
T cd01152 282 EAEAEALRLLVFRLASALAA------------------GKPPGAEASIAKLFGSELAQELAELALELLGTAALLR 338 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHc------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 99999999999999987652 0112345789999999999999999999999999974
No 39
>KOG1469|consensus
Probab=99.90 E-value=1.4e-23 Score=166.97 Aligned_cols=180 Identities=18% Similarity=0.219 Sum_probs=158.6
Q ss_pred CCcceeeeccCCC-CCCcEEEEEEEeeeCC--CCceeeeEEEEeeeCCCCCCCCCCceeeCC----------CCceeccC
Q psy1771 1 MGTVLQWIVYKLG-KCATHAIVFARLITPD--SVDHGLHAFLVPIRDPKTLLPYPGVTVGDL----------EGTYTSPF 67 (217)
Q Consensus 1 ~lnG~K~~is~~~-~~A~~~~v~ar~~~~~--~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~----------~~~~~~~~ 67 (217)
++||.|||+|+++ +.|.++++..++ ++. +.+...|+.|||. ++|||+|.++ .+..++.|
T Consensus 144 vINg~KWw~sga~~PkCrv~i~mGkt-~~~~~~rhkQqSmiLVpM-------~TpGvkiiRpltVfG~~DapgGH~Ei~F 215 (392)
T KOG1469|consen 144 VINGKKWWISGAGDPKCRIAIFMGKT-DNTSASRHKQQSMILVPM-------NTPGVKIIRPLTVFGYTDAPGGHFEIHF 215 (392)
T ss_pred EEecceeeecCCCCCceEEEEEeccc-CCCccchhhcccEEEEec-------CCCCeeEeeeeeeeccccCCCCcceEEE
Confidence 4799999999942 448899999999 443 4578899999999 9999999883 34556777
Q ss_pred CC-----------CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHH
Q psy1771 68 RD-----------PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQ 136 (217)
Q Consensus 68 ~~-----------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq 136 (217)
++ +|.||++....+..+|+.-++-.+|.++++++.-.+.+..|..|| + +|.++..+.
T Consensus 216 ~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFg--k----------~l~q~~s~~ 283 (392)
T KOG1469|consen 216 ENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFG--K----------KLVQHGSVA 283 (392)
T ss_pred EEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--c----------hhhhcchHH
Confidence 65 688999999999999999999999999999999999999999999 9 999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q psy1771 137 WRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYL 216 (217)
Q Consensus 137 ~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~ 216 (217)
.-|++...+++.+|+++.++++.+|.+- ........+|.|+.+...+.++++.++|++||.|.+
T Consensus 284 ~diA~sRveiEqaRLLvLkAAh~mD~~G----------------~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s 347 (392)
T KOG1469|consen 284 HDIAESRVEIEQARLLVLKAAHSMDTLG----------------NKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVS 347 (392)
T ss_pred HHHHHHHhHhhhhhhhhhhhhhhhhhhc----------------chhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999887422 235567789999999999999999999999999975
No 40
>KOG0138|consensus
Probab=99.90 E-value=4e-23 Score=166.59 Aligned_cols=174 Identities=20% Similarity=0.211 Sum_probs=149.5
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCCCCce--------eccCCC---
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLEGTY--------TSPFRD--- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~~~~--------~~~~~~--- 69 (217)
+|||+|+||+| +++||+++|+||.. .++ .|--|+|.+ +.+|++....++.. .+.+++
T Consensus 200 klNGsKtWI~n-sp~aDl~vvwAr~~-t~n---~I~GFi~~k-------~~~GL~apkI~gK~sLRas~tG~Ilmd~V~V 267 (432)
T KOG0138|consen 200 KLNGSKTWITN-SPMADLFVVWARCE-TDN---KIRGFILEK-------GMRGLSAPKIEGKFSLRASATGMILMDGVEV 267 (432)
T ss_pred EECCeeeeecC-CcccceEEEEEecc-cCC---ceeeEEEec-------CCCCCcCCCcCCeeeeeecccCceeecCCcC
Confidence 48999999999 99999999999984 233 366789998 89998887755433 223333
Q ss_pred ------C-CchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHH
Q psy1771 70 ------P-GKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPH 142 (217)
Q Consensus 70 ------~-~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~ 142 (217)
| ..++.-.+.+++..|+.+|+..+|+++.+++.+.+|+..|+||| . ||+.+|.+|.+|++|
T Consensus 268 PeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG--~----------PLAanQL~Q~Kladm 335 (432)
T KOG0138|consen 268 PEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFG--R----------PLAANQLIQKKLADM 335 (432)
T ss_pred ChhhcCCCccccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhC--C----------chhHHHHHHHHHHHH
Confidence 2 24566678899999999999999999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q psy1771 143 LAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYL 216 (217)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~ 216 (217)
..++...-..++++.+..| ++......+++.|.+.+-.+.++++..++++||.|.+
T Consensus 336 ltei~lgl~~clrl~rLkd------------------~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~ 391 (432)
T KOG0138|consen 336 LTEITLGLQACLRLGRLKD------------------QGKATPEQISLLKRNNCGKALEIARQARDMLGGNGIS 391 (432)
T ss_pred HHHHHHHHHHHHHhhhhhh------------------cccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcch
Confidence 9999999999999776544 4566778899999999999999999999999999975
No 41
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.87 E-value=2.1e-21 Score=171.82 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=132.2
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeC---C-C--CceeeeEEEEeeeCCCCCCCCCCceeeCCCCceeccCCC-----
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITP---D-S--VDHGLHAFLVPIRDPKTLLPYPGVTVGDLEGTYTSPFRD----- 69 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~---~-~--~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~~~~~~~~~~----- 69 (217)
+|||+|.|+ + +..||+++|+|++++. + + ...++++|+||+ +.|||++.. .++.|+|
T Consensus 164 vLNG~K~~t-~-g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~-------dapGVtv~~----~eV~FddVP~~~ 230 (520)
T PTZ00457 164 VLTGQKRCE-F-AASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAK-------DAKGVSVNG----DSVVFENTPAAD 230 (520)
T ss_pred EEEEEEEEE-c-CchhcEEEEEeecCCcccccccccCcCceEEEEEEC-------CCCceEEec----CEEEECCCCHHH
Confidence 489999976 8 8999999999998321 1 1 135799999998 899999975 4566665
Q ss_pred ----CCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHHH
Q psy1771 70 ----PGKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLAA 145 (217)
Q Consensus 70 ----~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~~ 145 (217)
+++|++.++..++.+|+.+++.++|+++++++.+++|++ +|.+|++|++|.++
T Consensus 231 vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-----------------------~QaVq~~LAdma~~ 287 (520)
T PTZ00457 231 VVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-----------------------EEGATDTVASFACA 287 (520)
T ss_pred hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999974 26799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhh---HHHHHHHHHHHH
Q psy1771 146 VYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAG---WIARDGIQECRE 208 (217)
Q Consensus 146 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~---e~a~~~~~~~~~ 208 (217)
++++|++++++++.+|+ ...+...+++++|+|++ |.+++++++++|
T Consensus 288 ieAarsl~y~AA~~~D~-----------------g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~ 336 (520)
T PTZ00457 288 MYAMESTLYALTANLDL-----------------PTEDSLLECTLVSAFVQSTTNQLLSILETATP 336 (520)
T ss_pred HHHHHHHHHHHHHHHhC-----------------CCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc
Confidence 99999999999988762 12467899999999999 999999999877
No 42
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.78 E-value=3.8e-18 Score=128.23 Aligned_cols=117 Identities=26% Similarity=0.375 Sum_probs=108.8
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHHHHHHHH
Q psy1771 71 GKRFGSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLAAVYMLR 150 (217)
Q Consensus 71 ~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~~~~~~r 150 (217)
|+||..++..++.+|+.+++.++|.++.+++.+.+|+++|.+++ + |+.++|.+|++|+++..++++++
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g--~----------~l~~~~~v~~~la~~~~~~~a~~ 68 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFG--K----------PLAEHPAVRRRLADMAARLEAMR 68 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETT--E----------EGGGSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--C----------cccchhhhHHHHHhhccchhhhh
Confidence 68999999999999999999999999999999999999999999 9 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 151 VFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
+++++++..++. +.....+++++|+++++.+.++++.|++++|+.||++
T Consensus 69 ~~~~~~~~~~~~------------------~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~ 117 (150)
T PF00441_consen 69 ALVYRAARRLDA------------------GQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTE 117 (150)
T ss_dssp HHHHHHHHHHHT------------------TSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred cccccccccccc------------------ccccccccchhhhhcccccccchhhhhhhhhhhhhcc
Confidence 999999887652 2233888999999999999999999999999999863
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.77 E-value=3.4e-18 Score=150.67 Aligned_cols=177 Identities=16% Similarity=0.088 Sum_probs=138.4
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCc-ee--eeEEEEeeeCCCCCCCCCCceeeCC------------------
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVD-HG--LHAFLVPIRDPKTLLPYPGVTVGDL------------------ 59 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~-~~--l~~flVp~~~~~~~~~~~Gv~i~~~------------------ 59 (217)
++||.|.|+|+ + .||+++|++++.. .+++ .+ .++|+||. ++||+++...
T Consensus 179 VV~GaK~~~T~-~-~ad~~~V~~~~~~-~~~~~~~~ya~~F~VP~-------dtpGl~~i~r~~~~~~~~~~D~plssrf 248 (477)
T TIGR02309 179 IVRGARMTATF-P-IADEILIFPSTVL-KAGAEKDPYALAFAIPT-------NTPGLHFVCREALDGGDSPFDHPLSSRF 248 (477)
T ss_pred EEeCHHHhhhh-c-ccceEEEeccCCC-CCccCCCCeEEEEEeeC-------CCCceEEEeCCccCCCCCcccCcccccc
Confidence 58999999999 8 9999999999843 2222 23 68999999 9999998741
Q ss_pred -CCceeccCCCCCchhHhH--HH-------H--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCC
Q psy1771 60 -EGTYTSPFRDPGKRFGSS--LG-------A--LSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEEL 127 (217)
Q Consensus 60 -~~~~~~~~~~~~~g~~~~--~~-------~--l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~ 127 (217)
+..+.+.|||+--+|..+ .. . ....++..+..++|.+..+++.++.|++. ..++ .
T Consensus 249 de~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~--~---------- 315 (477)
T TIGR02309 249 EEMDALVIFDDVLVPWERIFILGDVELCNNAYAATGAVNHMAHQVVALKIAKTEAFLGVAAL-MAEG--I---------- 315 (477)
T ss_pred CCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh--h----------
Confidence 134567778743333332 10 0 12234677899999999999999999999 8889 8
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchH--HHHHHHhhhhhhhhHHHHHHHHH
Q psy1771 128 PVLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGA--EIHALSSAGKPLAGWIARDGIQE 205 (217)
Q Consensus 128 ~l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aK~~a~e~a~~~~~~ 205 (217)
++.++|+||++|+||.+.++++|++++++++..+. ...+. ....+++++|.++++...++. .
T Consensus 316 gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~---------------~~~G~~~P~~~~as~aKl~~~e~~~rv~-~ 379 (477)
T TIGR02309 316 GADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKE---------------NAYGLMTPDRGALDAARNLYPRLYPRLR-E 379 (477)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------------CCCCcccCCHHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999999999999999999998765321 00122 236789999999999999995 9
Q ss_pred HHHHhcCCCCC
Q psy1771 206 CREACGGHGYL 216 (217)
Q Consensus 206 ~~~~~G~~g~~ 216 (217)
++|++||.|++
T Consensus 380 alq~lGG~G~~ 390 (477)
T TIGR02309 380 ILEQLGASGLI 390 (477)
T ss_pred HHHHHhCCcEE
Confidence 99999999985
No 44
>KOG0136|consensus
Probab=99.76 E-value=1.8e-17 Score=145.70 Aligned_cols=203 Identities=36% Similarity=0.546 Sum_probs=156.7
Q ss_pred CcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCCC--------CceeccCCC----
Q psy1771 2 GTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE--------GTYTSPFRD---- 69 (217)
Q Consensus 2 lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~--------~~~~~~~~~---- 69 (217)
++..|||..++|..|+|++|+|++.. ++...|++.|+||.||++++.+.|||+|++.- ++.=+.|+|
T Consensus 181 ~ta~KWWPGgLG~ssnhAvV~AqL~~-~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIP 259 (670)
T KOG0136|consen 181 LTATKWWPGGLGKSSNHAVVVAQLIT-KGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIP 259 (670)
T ss_pred cceecccCCccccccchheeeeeeee-cccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeec
Confidence 46789999999899999999999964 77889999999999999999999999999831 222223332
Q ss_pred -----------CCchh-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccch
Q psy1771 70 -----------PGKRF-------GSSLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLE 131 (217)
Q Consensus 70 -----------~~~g~-------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~ 131 (217)
..+|. ...-..+-..|..+..-..=+...|..+|.+|+--|+|+.... ...++.+.|
T Consensus 260 R~nmLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~p-----g~~E~qIlD 334 (670)
T KOG0136|consen 260 RTNMLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRP-----GQPEVQILD 334 (670)
T ss_pred hHhhhhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----CCCCceeee
Confidence 01110 0111112223555566666677788899999999999976322 234557999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q psy1771 132 YELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACG 211 (217)
Q Consensus 132 ~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G 211 (217)
+|.-|.+|---.+..++-+.....+-+.|..+.......+ . +..++...+++-.|..+++.+-+-++.|+..||
T Consensus 335 yqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~--~----s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCG 408 (670)
T KOG0136|consen 335 YQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGN--F----SRLPELHALSAGLKAVVTWDTAQGIEQCRLACG 408 (670)
T ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--h----hhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcC
Confidence 9999999999999999999888888888877766665443 2 235789999999999999999999999999999
Q ss_pred CCCCC
Q psy1771 212 GHGYL 216 (217)
Q Consensus 212 ~~g~~ 216 (217)
|+||+
T Consensus 409 GHGYs 413 (670)
T KOG0136|consen 409 GHGYS 413 (670)
T ss_pred Cccch
Confidence 99997
No 45
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.53 E-value=1.4e-13 Score=101.93 Aligned_cols=112 Identities=20% Similarity=0.123 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1771 86 VSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQM 165 (217)
Q Consensus 86 ~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~ 165 (217)
+.+++.++|++++++++++++++.|...+... ++.+.|.+|.+|+++...+++++++++++++.+++...
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~----------~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~ 70 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA----------PLADDPYIQARLGEAAARLDAARALLYRAARRLWEAAD 70 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS----------BCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----------chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999988844336 99999999999999999999999999999999887655
Q ss_pred HHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q psy1771 166 KLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGGHGYLK 217 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~~g~~~ 217 (217)
.....+ ++......+.|.++.+.+.++++.+++++|+.++.+
T Consensus 71 ~g~~~~----------~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~ 112 (134)
T PF08028_consen 71 AGEELT----------PEERARLRAAKAHAARLAREAVDRLFRLAGGSALYR 112 (134)
T ss_dssp TT--------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBT
T ss_pred ccCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhc
Confidence 443333 567788888899999999999999999999998863
No 46
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=98.03 E-value=2.6e-06 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=22.9
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEe
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARL 25 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~ 25 (217)
+|||+|+||++ ++.||+++|+||+
T Consensus 28 ~L~G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 28 VLNGEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEEEEEEEEET-TTTESEEEEEEEE
T ss_pred EEeeEEEEECC-cCccCEEEEEEEE
Confidence 48999999999 9999999999998
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.85 E-value=0.00044 Score=60.46 Aligned_cols=173 Identities=17% Similarity=0.102 Sum_probs=102.4
Q ss_pred CCcceeeeccCCCCCCcEEEEE-EEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeCCC----------C--------
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVF-ARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE----------G-------- 61 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~-ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~~~----------~-------- 61 (217)
++.|-|.-+|+ +..+|..+|+ .+...+++. .--.+|.+|. ++|||++.-.. +
T Consensus 183 VVrGAK~~aT~-~a~tdei~V~Pt~~~~~~d~-dfAv~FaiP~-------dt~GvK~i~r~s~~~~~~~~~g~fd~plss 253 (493)
T COG2368 183 VVRGAKALATG-SALTDEIFVLPTRSMQEDDK-DFAVAFAIPM-------DTEGVKFICRRSYELGRGAEGGPFDYPLSS 253 (493)
T ss_pred EEEChHHHhcc-ccccceEEEeeccccCCCCC-ceEEEEEccc-------CCCceEEEecCcchhhcccCCCCCCCcccc
Confidence 46899999999 8999988887 665433222 2235799999 99999986410 1
Q ss_pred -----ceeccCCCCCchhHhHH--------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCC
Q psy1771 62 -----TYTSPFRDPGKRFGSSL--------------GAL-STGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSD 121 (217)
Q Consensus 62 -----~~~~~~~~~~~g~~~~~--------------~~l-~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~ 121 (217)
.+-+.|||+=-.|..++ ..+ .+.|...+..-.+-..-.+=.+..-++ . .
T Consensus 254 rfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~---~----~---- 322 (493)
T COG2368 254 RFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAE---T----N---- 322 (493)
T ss_pred ccccCceEEEecccccchhheeeeccHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH---h----h----
Confidence 12345555211222111 111 111221111111111111111111111 1 2
Q ss_pred CCCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHH
Q psy1771 122 SEPEELPVLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARD 201 (217)
Q Consensus 122 ~~~~~~~l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~ 201 (217)
-+.++++||.+|+||.+-.+.+.++...++..-.. +....--.....+...|.++.+.--+
T Consensus 323 ------Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~-------------~~~G~~~Pn~~~~n~~r~~~~~~~~~ 383 (493)
T COG2368 323 ------GVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQK-------------NPNGAWLPNPAYANVGRVYAPKAYPR 383 (493)
T ss_pred ------CccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------CCCCceecCHHHHhhHHHhcccchHH
Confidence 34568999999999999999999999887754211 11011134567788899999999999
Q ss_pred HHHHHHHHhcC
Q psy1771 202 GIQECREACGG 212 (217)
Q Consensus 202 ~~~~~~~~~G~ 212 (217)
+.+.+.++.||
T Consensus 384 ~~~~l~~i~gg 394 (493)
T COG2368 384 IKEILQDISGG 394 (493)
T ss_pred HHHHHHHHhcC
Confidence 99999998886
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=97.38 E-value=0.0058 Score=54.85 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=51.3
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q psy1771 130 LEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREA 209 (217)
Q Consensus 130 ~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~ 209 (217)
..+++||.+|+|+..-.+..++++..+...-. .+....-.........+|.+..+.--++++.+.+.
T Consensus 329 ~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~-------------~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~ 395 (519)
T TIGR02310 329 LEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAY-------------QWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQT 395 (519)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------cCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 35799999999999999999999877654211 00011112445667889999999999999988877
Q ss_pred hcC
Q psy1771 210 CGG 212 (217)
Q Consensus 210 ~G~ 212 (217)
+||
T Consensus 396 ~ag 398 (519)
T TIGR02310 396 VTS 398 (519)
T ss_pred ccC
Confidence 664
No 49
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=94.53 E-value=0.16 Score=40.30 Aligned_cols=72 Identities=13% Similarity=-0.047 Sum_probs=53.9
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy1771 129 VLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECRE 208 (217)
Q Consensus 129 l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~ 208 (217)
+.++|+||.+|+|+..-.+..++++..+...-. .+....-.+.......+|.+..+.--++++.+.+
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~-------------~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~ 110 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEAE-------------PDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQD 110 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-E-------------E-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------cCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344799999999999999999999987553210 0111112355677889999999999999999999
Q ss_pred HhcCC
Q psy1771 209 ACGGH 213 (217)
Q Consensus 209 ~~G~~ 213 (217)
++||.
T Consensus 111 l~gg~ 115 (205)
T PF03241_consen 111 LGGGG 115 (205)
T ss_dssp HHGGG
T ss_pred HhCCC
Confidence 99974
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=90.35 E-value=0.23 Score=40.89 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=34.4
Q ss_pred CCcceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeC
Q psy1771 1 MGTVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGD 58 (217)
Q Consensus 1 ~lnG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~ 58 (217)
+++|-|.-.|+ ++.+|.++|+--..-..+...--.+|.||. ++||+++.-
T Consensus 174 vVrGAK~~~T~-a~~adei~V~p~~~~~~~d~dyAv~FavP~-------~tpGlk~i~ 223 (264)
T PF11794_consen 174 VVRGAKMLATG-APYADEILVFPTRAMRPGDEDYAVAFAVPM-------NTPGLKIIC 223 (264)
T ss_dssp EEEEEEEEEET-GCCSSEEEE--SSSSTTCCGGG-EEEEEET-------T-TTEEEEE
T ss_pred EEeChhhhhcC-CcccccEEEeeccCCCCCCCceEEEEEccC-------CCCCEEEEe
Confidence 47899999999 999998888765421122223345899999 999999974
No 51
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=88.22 E-value=6.2 Score=35.88 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=52.8
Q ss_pred ccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHH
Q psy1771 128 PVLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECR 207 (217)
Q Consensus 128 ~l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~ 207 (217)
.|.+.|.+..||+|+.+.++++-+.+.++...+.+ ..+....+..+++.||.+...++-..+-
T Consensus 432 ~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~-----------------~~~~~~~e~~la~~fc~~a~~rv~~~~~ 494 (520)
T PTZ00457 432 QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSK-----------------GLPSAKVEGELASAFIAMAVSRARQLSE 494 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988887654321 1223333456889999998888888787
Q ss_pred HHhcC
Q psy1771 208 EACGG 212 (217)
Q Consensus 208 ~~~G~ 212 (217)
+++..
T Consensus 495 ~~~~~ 499 (520)
T PTZ00457 495 ESCNV 499 (520)
T ss_pred HHhcc
Confidence 77764
No 52
>KOG0137|consensus
Probab=85.24 E-value=13 Score=33.99 Aligned_cols=96 Identities=10% Similarity=-0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1771 86 VSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQM 165 (217)
Q Consensus 86 ~~~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~ 165 (217)
+.-++.++-.+-..|..+++-.-.+ .+ + -+.+.+.+-++||+..+.++++-+.+.++.+.+..
T Consensus 508 L~~saq~~e~~~~~~~~~Ve~ll~k--~~--k----------~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i--- 570 (634)
T KOG0137|consen 508 LQDSAQKLESSLARFQQVVEKLLTK--HG--K----------GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI--- 570 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hc--c----------chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc---
Confidence 3445555545555555555554443 24 6 88899999999999999999999999998876541
Q ss_pred HHhhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q psy1771 166 KLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGG 212 (217)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~ 212 (217)
..+....+...++.+|+|...++...+-++.++
T Consensus 571 --------------gl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 571 --------------GLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 235667888999999999999999998888776
No 53
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=36.13 E-value=67 Score=24.40 Aligned_cols=46 Identities=22% Similarity=0.106 Sum_probs=27.7
Q ss_pred cceeeeccCCCCCCcEEEEEEEeeeCCCCceeeeEEEEeeeCCCCCCCCCCceeeC
Q psy1771 3 TVLQWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGD 58 (217)
Q Consensus 3 nG~K~~is~~~~~A~~~~v~ar~~~~~~~~~~l~~flVp~~~~~~~~~~~Gv~i~~ 58 (217)
.++..|+.. +...+|++|+|.. +..+....+-+|++| ...||++.+
T Consensus 79 ~tsQ~fiPl-~~~~~~lvvVA~~-~~~Pd~~~lrAF~~~--------~gqgV~~~~ 124 (165)
T PF04115_consen 79 LTSQAFIPL-DGSPWYLVVVAPD-DDGPDPETLRAFLAP--------GGQGVNYHR 124 (165)
T ss_dssp TB-EEEEES-BS---EEEEEEES-SSS-ECCCEEEEEE---------SS-EEEE-T
T ss_pred CeeEEEEEC-CCCccEEEEEcCC-CCCCCccceEEEEEc--------CCEEEEECC
Confidence 356677777 5544478888886 334445778999999 578899887
No 54
>COG3768 Predicted membrane protein [Function unknown]
Probab=32.29 E-value=2.9e+02 Score=23.57 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCCCCCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1771 88 IIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLAAVYMLRVFSDYFTREMGRFQMKL 167 (217)
Q Consensus 88 ~aa~~~G~a~~al~~a~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~vq~~la~~~~~~~~~r~~~~~~~~~~~~~~~~~ 167 (217)
...-.++.+++++..-........... -..+..|..+-|++..=+..+++...+..-+|...+..
T Consensus 140 ~~~~~~~~gr~a~c~~~A~~ag~~~ta---------------pg~~~w~~~~~e~~d~~elv~L~e~~vl~plD~qAr~l 204 (350)
T COG3768 140 LHSHGVKAGRKAVCELLAQQAGIPETA---------------PGRQRWQESLHEIIDARELVELAEREVLPPLDAQARRL 204 (350)
T ss_pred HHhcCcchHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHhccccccHHHHHHHHHhccChhhHHHHHH
Confidence 334455666666666555554443333 12366677777777777777777777666666544433
Q ss_pred hhCCCCCcccccchHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC-CCC
Q psy1771 168 MEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQECREACGG-HGY 215 (217)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~~~~~~G~-~g~ 215 (217)
.+....-. .--......+.+--.|+.+...+-++.+-|+.|+ -||
T Consensus 205 Is~~A~e~---slv~AVSPlAlVDm~fv~wrn~RLinriAeLYGielGy 250 (350)
T COG3768 205 ISRSAKEV---SLVTAVSPLALVDMAFVAWRNLRLINRIAELYGIELGY 250 (350)
T ss_pred HHHHhhhh---heeeeechHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 32220000 0001223344455678889999999999999998 454
No 55
>PF02500 DNA_pack_N: Probable DNA packing protein, N-terminus ; InterPro: IPR003499 This family includes proteins that are probably involved in DNA packing in Herpesviridae. This domain is normally found at the N terminus of the protein.; GO: 0006323 DNA packaging
Probab=26.27 E-value=31 Score=28.75 Aligned_cols=24 Identities=42% Similarity=0.721 Sum_probs=18.1
Q ss_pred eeEEEEeeeCCCC----------CCCCCCceeeC
Q psy1771 35 LHAFLVPIRDPKT----------LLPYPGVTVGD 58 (217)
Q Consensus 35 l~~flVp~~~~~~----------~~~~~Gv~i~~ 58 (217)
-++||||||--|+ +....||+|+-
T Consensus 190 aTVFLVPRRHGKTWfvVpiIsllL~s~~gI~IGY 223 (284)
T PF02500_consen 190 ATVFLVPRRHGKTWFVVPIISLLLASFEGIKIGY 223 (284)
T ss_pred CcEEEeeccCCCcchHHHHHHHHHHHhcCceeee
Confidence 4789999988776 45667777775
Done!