RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1771
         (217 letters)



>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
           domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 183

 Score = 85.7 bits (211), Expect = 1e-21
 Identities = 46/133 (34%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 85  RVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQWRLFPHLA 144
           R  ++G     LSKA TIA+RY+ VRRQ    +        E  +L+++  Q++LFP LA
Sbjct: 5   RSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSE-----PEPQILDFQTQQYKLFPLLA 59

Query: 145 AVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAGWIARDGIQ 204
             Y       Y      R    + +G   +        E+HAL++  K    W A  GI+
Sbjct: 60  TAYAFHFVGRYMKETYLRINESIGQGDLSE------LPELHALTAGLKAFTTWTANAGIE 113

Query: 205 ECREACGGHGYLK 217
           ECR ACGGHGY  
Sbjct: 114 ECRMACGGHGYSH 126


>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
           and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 189

 Score = 74.1 bits (181), Expect = 3e-17
 Identities = 47/141 (33%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 77  SLGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQGSDSEPEELPVLEYELLQ 136
             G +   R +I+      LS+A+ IA RY+ VRRQFG           E  V++Y+  Q
Sbjct: 5   VYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNG-----GIETQVIDYKTQQ 59

Query: 137 WRLFPHLAAVYMLRVFSDYFTREMGRFQMKLMEGGGDKDYLGAMGAEIHALSSAGKPLAG 196
            RLFP LA+ Y  R   ++          +L               E HA ++  K L  
Sbjct: 60  NRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFAT------LPEAHACTAGLKSLTT 113

Query: 197 WIARDGIQECREACGGHGYLK 217
               DGI+ECR+ CGGHGYL 
Sbjct: 114 TATADGIEECRKLCGGHGYLW 134


>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
           1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 267

 Score = 47.1 bits (111), Expect = 4e-07
 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 15  CATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE 60
            + HAIV A+L       +GLHAF+VPIR+  T  P PG+TVGD+ 
Sbjct: 183 TSNHAIVLAQL-ITQGECYGLHAFVVPIREIGTHKPLPGITVGDIG 227


>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
           2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 271

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 12  LGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE 60
           LGK +THA+V+ARLI  +  D+G+H F+V +R  +   P P +TVGD+ 
Sbjct: 178 LGKVSTHAVVYARLI-TNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIG 225


>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
           {Megasphaera elsdenii [TaxId: 907]}
          Length = 232

 Score = 30.4 bits (67), Expect = 0.11
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 6   QWIVYKLGKCATHAIVFARLITPDSVDHGLHAFLVPIRDPKTLLPYPGVTVGDLE 60
             I    G  A   IVFA        +HG+ AF++           PG T G  E
Sbjct: 157 SKIFITNGGAADIYIVFAM-TDKSKGNHGITAFILEDGT-------PGFTYGKKE 203


>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
           hygroscopicus [TaxId: 1912]}
          Length = 153

 Score = 28.5 bits (62), Expect = 0.39
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 78  LGALSTGRVSIIGFCVAYLSKAITIAVRYAGVRRQFGPPKQ 118
             +L+ GR S+   CV  L    T AV +A  R QFG P  
Sbjct: 7   AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLG 47


>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological
           specificity domain {Escherichia coli [TaxId: 562]}
          Length = 58

 Score = 24.6 bits (54), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 120 SDSEPEELPVLEYELLQ 136
           SD+EP  LP L  ++L+
Sbjct: 2   SDAEPHYLPQLRKDILE 18


>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 91

 Score = 24.4 bits (53), Expect = 6.4
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 156 FTREMGRFQMKLMEGGGDKDYLGAMGAEIHAL 187
            +  +     +L  G  +   L  +  +I  L
Sbjct: 60  ISWLLFTTDSRLNNGTNEHIQLLNLLVKISQL 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 882,507
Number of extensions: 42216
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)