BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17710
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UX1|A Chain A, Structural Characterization Of Adeno-Associated Virus
           Serotype 9
          Length = 518

 Score = 30.0 bits (66), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           DY + +VLGSA++  +PP P + F+
Sbjct: 131 DYQLPYVLGSAHEGCLPPFPADVFM 155


>pdb|3KIC|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIC|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
 pdb|3KIE|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
          Length = 736

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 347 EYQLPYVLGSAHQGCLPPFPADVFM 371


>pdb|3NG9|A Chain A, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|B Chain B, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|C Chain C, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|D Chain D, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|E Chain E, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|F Chain F, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|G Chain G, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|H Chain H, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|I Chain I, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|J Chain J, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
          Length = 736

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 348 EYQLPYVLGSAHQGCLPPFPADVFM 372


>pdb|1LP3|A Chain A, The Atomic Structure Of Adeno-Associated Virus (Aav-2), A
           Vector For Human Gene Therapy
 pdb|3J1S|A Chain A, Structure Of Adeno-Associated Virus-2 In Complex With
           Neutralizing Monoclonal Antibody A20
          Length = 519

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 131 EYQLPYVLGSAHQGCLPPFPADVFM 155


>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector:
           Cryo-Electron Microscopy At 4.5a Resolution
          Length = 737

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 349 EYQLPYVLGSAHQGCLPPFPADVFM 373


>pdb|3SHM|A Chain A, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|B Chain B, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|C Chain C, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|D Chain D, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|E Chain E, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|F Chain F, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|G Chain G, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|H Chain H, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|I Chain I, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|J Chain J, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|K Chain K, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|L Chain L, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|M Chain M, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|N Chain N, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|O Chain O, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|P Chain P, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|Q Chain Q, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|R Chain R, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|S Chain S, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|T Chain T, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
          Length = 516

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 128 EYQLPYVLGSAHQGCLPPFPADVFM 152


>pdb|1VU0|U Chain U, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|V Chain V, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|W Chain W, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|X Chain X, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|Y Chain Y, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|Z Chain Z, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|AA Chain a, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|BB Chain b, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|CC Chain c, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|DD Chain d, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|EE Chain e, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|FF Chain f, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|GG Chain g, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|HH Chain h, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|II Chain i, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|JJ Chain j, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|KK Chain k, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|LL Chain l, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|MM Chain m, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|NN Chain n, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|OO Chain o, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|PP Chain p, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|QQ Chain q, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|RR Chain r, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|SS Chain s, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|TT Chain t, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|UU Chain u, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|VV Chain v, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|WW Chain w, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|XX Chain x, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|YY Chain y, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|ZZ Chain z, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|0 Chain 0, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|1 Chain 1, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|2 Chain 2, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|3 Chain 3, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|4 Chain 4, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|5 Chain 5, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|6 Chain 6, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|7 Chain 7, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|A Chain A, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|B Chain B, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|C Chain C, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|D Chain D, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|E Chain E, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|F Chain F, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|G Chain G, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|H Chain H, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|I Chain I, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|J Chain J, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|K Chain K, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|L Chain L, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|M Chain M, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|N Chain N, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|O Chain O, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|P Chain P, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|Q Chain Q, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|R Chain R, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|S Chain S, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|T Chain T, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
          Length = 520

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 132 EYQLPYVLGSAHQGCLPPFPADVFM 156


>pdb|3OAH|A Chain A, Structural Characterization Of The Dual Glycan Binding
           Adeno- Associated Virus Serotype 6
          Length = 534

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 146 EYQLPYVLGSAHQGCLPPFPADVFM 170


>pdb|2QA0|A Chain A, Structure Of Adeno-Associated Virus Serotype 8
 pdb|3RA2|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
           With Endosomal Trafficking
 pdb|3RA4|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
           With Endosomal Trafficking
 pdb|3RA8|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
           With Endosomal Trafficking
 pdb|3RA9|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
           With Endosomal Trafficking
 pdb|3RAA|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
           With Endosomal Trafficking
          Length = 519

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 131 EYQLPYVLGSAHQGCLPPFPADVFM 155


>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
           Understanding Mob-Regulated Cell Cycle Pathways
          Length = 185

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 37  KLVDYLMDWVLGSANQVTIPPTP-----GESFVSISRDLLK 72
           K +DYLM WV    +  T+ P+       ++F+S+++ +LK
Sbjct: 82  KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 122


>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
          Length = 202

 Score = 26.2 bits (56), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 37  KLVDYLMDWVLGSANQVTIPPTP-----GESFVSISRDLLK 72
           K +DYLM WV    +  T+ P+       ++F+S+++ +LK
Sbjct: 99  KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 139


>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
           Escherichia Coli
          Length = 479

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 31  EMSFRNKLVDYLMDWVLGSANQVTIPPTPGESFVSISRDL 70
           E++F    +DY+ +W      ++     PGE+ +   R L
Sbjct: 104 EVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRAL 143


>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
           Coli: The Ternary Complex With Product Bound (L)-Lactate
           And Nadh.
 pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
           Coli: The Binary Complex With Nadph
          Length = 479

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 31  EMSFRNKLVDYLMDWVLGSANQVTIPPTPGESFVSISRDL 70
           E++F    +DY+ +W      ++     PGE+ +   R L
Sbjct: 104 EVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRAL 143


>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
          Length = 479

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 31  EMSFRNKLVDYLMDWVLGSANQVTIPPTPGESFVSISRDL 70
           E++F    +DY+ +W      ++     PGE+ +   R L
Sbjct: 104 EVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRAL 143


>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
 pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
 pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
          Length = 329

 Score = 25.4 bits (54), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 39  VDYLMDWVLGSANQVTIPPTPGE 61
           +D++ DWVLG+A + T    P +
Sbjct: 250 IDHIHDWVLGTAGKWTTMGIPSD 272


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,027,167
Number of Sequences: 62578
Number of extensions: 57878
Number of successful extensions: 153
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 16
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)