BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17710
         (75 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2
          Length = 2839

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 3    VHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQV 53
            VHA+ IKTKLC L+E MM RRDDL+F +EM FRNK+V+YL DWV+G++NQ 
Sbjct: 1006 VHAIQIKTKLCQLVEVMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQA 1056


>sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1
          Length = 2841

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 3    VHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQV 53
            VHA+ IKTKLC L+E MM RRDDL+F +EM FRNK+V+YL DWV+G++NQ 
Sbjct: 1008 VHAIQIKTKLCQLVEVMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQA 1058


>sp|P97526|NF1_RAT Neurofibromin OS=Rattus norvegicus GN=Nf1 PE=1 SV=1
          Length = 2820

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 3    VHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQV 53
            VHA+ IKTKLC L+E MM RRDDL+F +EM FRNK+V+YL DWV+G++NQ 
Sbjct: 1008 VHAIQIKTKLCQLVEVMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQA 1058


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,267,502
Number of Sequences: 539616
Number of extensions: 781635
Number of successful extensions: 2238
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2234
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)