Query psy17710
Match_columns 75
No_of_seqs 65 out of 67
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 21:03:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpp_A IWS1, ECU08_0440; trans 69.3 12 0.00042 24.9 5.5 38 9-50 37-74 (145)
2 3nfq_A Transcription factor IW 66.4 16 0.00053 25.2 5.7 39 9-51 52-90 (170)
3 2rf4_B DNA-directed RNA polyme 34.8 12 0.00041 23.5 0.8 35 36-70 34-71 (87)
4 1lyp_A CAP18; lipopolysacchari 29.7 30 0.001 17.8 1.7 12 32-43 7-18 (32)
5 3rru_A TOM1L1 protein; structu 24.3 71 0.0024 20.9 3.2 21 32-52 115-135 (152)
6 2py8_A Hypothetical protein RB 23.9 66 0.0022 21.7 3.0 31 15-46 56-86 (147)
7 2k9x_A Tburm1, uncharacterized 23.3 1.4 4.8E-05 28.0 -5.2 41 4-45 3-47 (110)
8 1x5b_A Signal transducing adap 21.8 1.1E+02 0.0038 20.0 3.8 21 31-51 109-129 (163)
9 2f6h_X Myosin-2, type V myosin 21.5 1.1E+02 0.0037 23.0 4.1 38 13-51 241-278 (419)
10 3mmi_A Myosin-4; globular tail 21.2 1E+02 0.0034 23.6 3.9 35 13-48 225-259 (386)
11 2jrh_A Mitogen-activated prote 20.1 29 0.001 22.0 0.6 11 64-74 54-64 (94)
No 1
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=69.32 E-value=12 Score=24.91 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcccccchhhhHHHHHHHHHHHHHHHhcCcC
Q psy17710 9 KTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSA 50 (75)
Q Consensus 9 Kik~CqL~e~vm~rkd~l~~r~e~~~RNkLle~i~eW~~~~s 50 (75)
|+++.+-+.+++.|++. ++.=+-|-+|+.|.+|+.+..
T Consensus 37 KlklL~~V~~~l~k~~l----~~~~ld~giL~~l~~WL~PLp 74 (145)
T 2xpp_A 37 KIENVEEISDILMSKAL----QESLLDEGILDEIKGWLEPLP 74 (145)
T ss_dssp HHHHHHHHHHHHTCTTT----HHHHHHTTHHHHHHHHHSCCT
T ss_pred HHhhHHHHHHHHhhHHH----HHHHHHcCHHHHHHHHhCcCC
Confidence 78899999999999985 456677999999999999543
No 2
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=66.43 E-value=16 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcccccchhhhHHHHHHHHHHHHHHHhcCcCC
Q psy17710 9 KTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSAN 51 (75)
Q Consensus 9 Kik~CqL~e~vm~rkd~l~~r~e~~~RNkLle~i~eW~~~~s~ 51 (75)
|+++.+-|..++.|++. ++.=+-|.+|+.|..|+.+...
T Consensus 52 KLkmL~~V~~~L~k~~L----~~~~ld~giL~~l~~WLePLpD 90 (170)
T 3nfq_A 52 KVKLLPKVVSVLSKANL----ADTILDNNLLQSVRIWLEPLPD 90 (170)
T ss_dssp HHHHHHHHHHHHTCGGG----HHHHHHTTHHHHHHHHHSCCTT
T ss_pred HHhhHHHHHHHHhHHHH----HHHHHHcchHHHHHHHhCcCCC
Confidence 89999999999999887 4455568999999999996643
No 3
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=34.77 E-value=12 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCcCCCCC-CCC--CCCCchhhhhhhh
Q psy17710 36 NKLVDYLMDWVLGSANQVT-IPP--TPGESFVSISRDL 70 (75)
Q Consensus 36 NkLle~i~eW~~~~s~~~~-~~~--~~~d~~~rlqrDL 70 (75)
-+.++.|.++|.....-.. +.+ ..--+++|+||||
T Consensus 34 ~eae~~L~~FI~~~E~~~~~~t~lSs~LsQLKRvQRdl 71 (87)
T 2rf4_B 34 DEVLQFLESFIDEKENIIDIDTNLSSSISQLKRIQRDF 71 (87)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhh
Confidence 4567888888875554210 000 0112589999998
No 4
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=29.74 E-value=30 Score=17.78 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q psy17710 32 MSFRNKLVDYLM 43 (75)
Q Consensus 32 ~~~RNkLle~i~ 43 (75)
-+|||++-|.+-
T Consensus 7 rkfrnkikeklk 18 (32)
T 1lyp_A 7 RKFRNKIKEKLK 18 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 368998887664
No 5
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.33 E-value=71 Score=20.88 Aligned_cols=21 Identities=14% Similarity=0.646 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhcCcCCC
Q psy17710 32 MSFRNKLVDYLMDWVLGSANQ 52 (75)
Q Consensus 32 ~~~RNkLle~i~eW~~~~s~~ 52 (75)
..+|+|+|+.|.+|...+..+
T Consensus 115 ~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 115 LDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp HHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 379999999999999876653
No 6
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=23.93 E-value=66 Score=21.67 Aligned_cols=31 Identities=13% Similarity=0.547 Sum_probs=23.8
Q ss_pred HHHHHHcccccchhhhHHHHHHHHHHHHHHHh
Q psy17710 15 LIEAMMRRRDDLAFRREMSFRNKLVDYLMDWV 46 (75)
Q Consensus 15 L~e~vm~rkd~l~~r~e~~~RNkLle~i~eW~ 46 (75)
.|+++|+.+-.|.+|= +..|-.+.+.++||.
T Consensus 56 fL~~Lmre~~~LAlRI-MeVR~~ya~e~fe~l 86 (147)
T 2py8_A 56 FLTELLDENKELVLRI-LAVREDIAESVLDFL 86 (147)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHHHHHHHGGGH
T ss_pred HHHHHHhhCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5677888887888775 777888888888884
No 7
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=23.28 E-value=1.4 Score=28.00 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHcccccchhhh----HHHHHHHHHHHHHHH
Q psy17710 4 HAVHIKTKLCNLIEAMMRRRDDLAFRR----EMSFRNKLVDYLMDW 45 (75)
Q Consensus 4 ~slRiKik~CqL~e~vm~rkd~l~~r~----e~~~RNkLle~i~eW 45 (75)
.+++||++|+.-.+.++.++..+.+-. +.-++. |+++|.+=
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~d-Ll~~L~~~ 47 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNG-LVQLLKTN 47 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHH-HHHHHTTT
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHH-HHHHHHHH
Confidence 358889999988888888766677762 235676 77777653
No 8
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=21.81 E-value=1.1e+02 Score=19.95 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhcCcCC
Q psy17710 31 EMSFRNKLVDYLMDWVLGSAN 51 (75)
Q Consensus 31 e~~~RNkLle~i~eW~~~~s~ 51 (75)
...+|+|+++.|.+|...+..
T Consensus 109 ~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 109 HPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 358999999999999886554
No 9
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=21.51 E-value=1.1e+02 Score=22.97 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=32.1
Q ss_pred HHHHHHHHcccccchhhhHHHHHHHHHHHHHHHhcCcCC
Q psy17710 13 CNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSAN 51 (75)
Q Consensus 13 CqL~e~vm~rkd~l~~r~e~~~RNkLle~i~eW~~~~s~ 51 (75)
+++...+|.||+..++.+.+.+|-.| ..|-+|......
T Consensus 241 ~~lFN~LL~r~~~cs~s~G~qIr~nl-s~Le~W~~~~~l 278 (419)
T 2f6h_X 241 AICFNELIMKRNFLSWKRGLQLNYNV-TRLEEWCKTHGL 278 (419)
T ss_dssp HHHHHHHHTCSSCCCHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred HHHHHHHhccCcccchhhHHHHHhhH-HHHHHHHHHcCC
Confidence 57889999999999999999999775 577899886544
No 10
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=21.22 E-value=1e+02 Score=23.56 Aligned_cols=35 Identities=11% Similarity=0.344 Sum_probs=30.9
Q ss_pred HHHHHHHHcccccchhhhHHHHHHHHHHHHHHHhcC
Q psy17710 13 CNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLG 48 (75)
Q Consensus 13 CqL~e~vm~rkd~l~~r~e~~~RNkLle~i~eW~~~ 48 (75)
|++...+|.||+..++.+.+.+|-.| ..|-+|...
T Consensus 225 a~lFN~LLlRr~~cs~s~G~qIr~NL-s~LEeW~~~ 259 (386)
T 3mmi_A 225 VMLFNDLITKCPALNWKYGYEVDRNI-ERLVSWFEP 259 (386)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHHHHH-HHHHHHHTT
T ss_pred HHHHHHHHccCcccCcchHHHHHhhH-HHHHHHHHh
Confidence 67888999999999999999999774 678899987
No 11
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.06 E-value=29 Score=22.02 Aligned_cols=11 Identities=36% Similarity=0.262 Sum_probs=8.2
Q ss_pred hhhhhhhhhhh
Q psy17710 64 VSISRDLLKFI 74 (75)
Q Consensus 64 ~rlqrDLD~a~ 74 (75)
-+=|-|||+|+
T Consensus 54 L~~Q~DLDkAv 64 (94)
T 2jrh_A 54 LKNQDDLDKAI 64 (94)
T ss_dssp CCSHHHHHHHH
T ss_pred ccCHHHHHHHH
Confidence 34477999997
Done!