RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17710
         (75 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 1.4
 Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 22/77 (28%)

Query: 12  LCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQVTI----PPTPGESF---- 63
             ++I   +R         +         ++    L +  + ++    P    + F    
Sbjct: 329 RLSIIAESIR---------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 64  -----VSISRDLLKFIW 75
                  I   LL  IW
Sbjct: 380 VFPPSAHIPTILLSLIW 396


>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
           lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
           2hfy_A 3uyn_A 1z97_A 1flj_A*
          Length = 260

 Score = 24.7 bits (54), Expect = 3.2
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 1   MTVHAVHIKTKLCNLIEAMMRRRDDLA 27
             +H VH   K     EA +++RD +A
Sbjct: 116 AELHLVHWNPKYNTFKEA-LKQRDGIA 141


>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
           genomics, joint center for structura genomics, JCSG;
           2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
           b.82.3.2
          Length = 232

 Score = 24.5 bits (54), Expect = 3.3
 Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 12  LCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQVTIPPTPGE--SFVSISR 68
           + N  + +  R  D         ++K++ + +        + T      +    +  +R
Sbjct: 145 VSNRAQNLYSRLWDEPTL---DLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTR 200


>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
           projection, disulfide bond, glycoprotein, lyase,
           membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
           {Homo sapiens}
          Length = 257

 Score = 24.7 bits (54), Expect = 3.8
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 1   MTVHAVHIKTKLCNLIEAMMRRRDDLA 27
             +H VH+ T    + EA + R   LA
Sbjct: 114 AEIHVVHLSTAFARVDEA-LGRPGGLA 139


>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A
          {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A
          2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
          Length = 134

 Score = 24.2 bits (52), Expect = 3.9
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 16 IEAMMRRRDDLAFRREMSFRNKLVDYLMDWV 46
          +EAMM    +L  R  ++ R  L + +++++
Sbjct: 57 LEAMMLENKELVLRI-LTVRENLAEGVLEFL 86


>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP:
           a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
          Length = 659

 Score = 24.2 bits (52), Expect = 5.4
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 18  AMMRRRDDLAFRREMSFRN--KLVDYLMDWVLGSANQVTIPPTPGESF 63
            +    + L +   + FR   K ++YL        ++V +    GE F
Sbjct: 173 TVFPIDEKLRYL--IPFRPVKKTIEYLESLTSDDPSKVAVFHDDGEKF 218


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 24.0 bits (51), Expect = 5.7
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 17  EAMMRRRDDLAFRREMSFRNKLVDYLMDW 45
              ++  D  +   E  +R K    L +W
Sbjct: 95  RKRLQELDAASKVMEQEWREKAKKDLEEW 123


>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
           structural genomics consortium, SGC, glycoprotein,
           lyase, M binding, secreted; 1.90A {Homo sapiens}
          Length = 278

 Score = 23.9 bits (52), Expect = 6.1
 Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 1   MTVHAVHIKTKLCNLIEAMMRRRDDLA 27
           + +H VH  +K  +   A     D LA
Sbjct: 116 IEIHIVHYNSKYKSYDIA-QDAPDGLA 141


>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET:
           SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
          Length = 155

 Score = 23.9 bits (51), Expect = 6.2
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 16  IEAMMRRRDDLAFRREMSFRNKLVDYLMDW 45
           IE +   + DLA R  M+ R  + + + ++
Sbjct: 76  IEELFLEKPDLALRI-MTVREHIAEEIAEF 104


>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
           mutation, lyase, metal-binding, lyase-lyase inhibitor
           compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
           1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
           1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
           1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
          Length = 260

 Score = 23.5 bits (51), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 1   MTVHAVHIKTKLCNLIEAMMRRRDDLA 27
             +H VH  TK  +  +A +++ D LA
Sbjct: 116 AELHLVHWNTKYGDFGKA-VQQPDGLA 141


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,193,287
Number of extensions: 56281
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)