RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17710
         (75 letters)



>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 144

 Score = 26.1 bits (57), Expect = 0.35
 Identities = 4/29 (13%), Positives = 11/29 (37%)

Query: 16 IEAMMRRRDDLAFRREMSFRNKLVDYLMD 44
          +     + + L    E  +R +   ++ D
Sbjct: 18 LAHTPSQLEGLDPATEARYRREGARFIFD 46


>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus
          sp. pcc 7002 [TaxId: 32049]}
          Length = 108

 Score = 24.3 bits (53), Expect = 1.2
 Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 16 IEAMMRRRDDLAFRREMSFRNKLVDYLMDW 45
          +EAMM    +L  R  ++ R  L + ++++
Sbjct: 56 LEAMMLENKELVLRI-LTVRENLAEGVLEF 84


>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 24.4 bits (53), Expect = 1.5
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 39  VDYLMDWVLGSANQVTI-PPTPGESFVSISRDLLKFI 74
           +DYLM WV    +  T+ P   G  F      + K I
Sbjct: 84  IDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTI 120


>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp.
          [TaxId: 1167]}
          Length = 115

 Score = 23.6 bits (51), Expect = 2.1
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 16 IEAMMRRRDDLAFRREMSFRNKLVDYLMDW 45
          IE +   + DLA R  M+ R  + + + ++
Sbjct: 56 IEELFLEKPDLALRI-MTVREHIAEEIAEF 84


>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
           {Adeno-associated virus, aav-2 [TaxId: 272636]}
          Length = 519

 Score = 23.7 bits (51), Expect = 2.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 40  DYLMDWVLGSANQVTIPPTPGESFV 64
           +Y + +VLGSA+Q  +PP P + F+
Sbjct: 131 EYQLPYVLGSAHQGCLPPFPADVFM 155


>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis
          sp., strain PCC 6803 [TaxId: 1143]}
          Length = 120

 Score = 23.2 bits (50), Expect = 3.2
 Identities = 4/31 (12%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 16 IEAMMRRRDDLAFRREMSFRNKLVDYLMDWV 46
          +  ++    +L  R  ++ R  + + ++D++
Sbjct: 56 LTELLDENKELVLRI-LAVREDIAESVLDFL 85


>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
           isozyme III [TaxId: 10116]}
          Length = 259

 Score = 22.9 bits (48), Expect = 5.6
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 1   MTVHAVHIKTKLCNLIEAMMRRRDDLAFR-------REMSFRNKLVDYLMDWVLGSANQV 53
             +H VH   K     EA+  + D +A         RE      L+D L D +     + 
Sbjct: 115 AELHLVHWNPKYNTFGEALK-QPDGIAVVGIFLKIGREKGEFQILLDAL-DKIKTKGKEA 172

Query: 54  TIPPTPGESFVSISRD 69
                         RD
Sbjct: 173 PFNHFDPSCLFPACRD 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 290,214
Number of extensions: 10790
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)