BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17711
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 5 SRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLIL 64
SRP S D T LV IE R+ +++ ++ G S+G LA AYA +P+RV ++L
Sbjct: 77 SRPHASLDNNTT-WHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVL 135
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP-----W---G 69
+QL + + L + ++GHS GG LA YA+ YP +V+ L+L +P W G
Sbjct: 98 QQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPIGLEDWKALG 157
Query: 70 FPQKSID 76
P +S+D
Sbjct: 158 VPWRSVD 164
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPL 85
L + L+G+S GG A +A++YPDR+ LIL P G P I L
Sbjct: 101 LDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKL 155
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPL 85
L + L+G+S GG A +A++YPDR+ LIL P G P I L
Sbjct: 101 LDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKL 155
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 2 GRSSRP---RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
GRS P +F+ D E + + S K +++ L+G S+GG LA AYA++Y D
Sbjct: 67 GRSEEPDQSKFTIDYGVEEAEALRS-----KLFGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 59 VKHLILA 65
+K LI++
Sbjct: 122 LKGLIVS 128
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 2 GRSSRP---RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
GRS P +F+ D E + + S K +++ L+G S+GG LA AYA++Y D
Sbjct: 67 GRSEEPDQSKFTIDYGVEEAEALRS-----KLFGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 59 VKHLILA 65
+K LI++
Sbjct: 122 LKGLIVS 128
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 2 GRSSRP---RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
GRS P +F+ D E + + S K +++ L+G S+GG LA AYA++Y D
Sbjct: 67 GRSEEPDQSKFTIDYGVEEAEALRS-----KLFGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 59 VKHLILA 65
+K LI++
Sbjct: 122 LKGLIVS 128
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 2 GRSSRP---RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
GRS P +F+ D E + + S K +++ L+G S+GG LA AYA++Y D
Sbjct: 67 GRSEEPDQSKFTIDYGVEEAEALRS-----KLFGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 59 VKHLILA 65
+K LI++
Sbjct: 122 LKGLIVS 128
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 2 GRSSRP---RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
GRS P +F+ D E + + S K +++ L+G S+GG LA AYA++Y D
Sbjct: 67 GRSEEPDQSKFTIDYGVEEAEALRS-----KLFGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 59 VKHLILA 65
+K LI++
Sbjct: 122 LKGLIVS 128
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 45/239 (18%)
Query: 2 GRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKH 61
GRSS T ++ + I+ +EL Q ++L+GHS G LA A A P ++K
Sbjct: 65 GRSSHLEMVTSYSSLT--FLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKE 122
Query: 62 LILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDL 121
LIL + P + + +K S + + Y + P P+ + + P L
Sbjct: 123 LILVE---LPLPAEESKKESAVNQLTTCLD--YLSSTPQHPIFPDVATAASRLRQAIPSL 177
Query: 122 PKKFTPVLKE--------------DSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRP 167
++F+ +L + D+ T I N P G S + + + +
Sbjct: 178 SEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLN-NLPGGRSQYLEMLKSI------ 230
Query: 168 MLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQN-SFVQVKSV-TGAGHHVYAD 224
VP T++YG D+S ++ ++ + Q + Q K V GH+++ D
Sbjct: 231 ----------QVPTTLVYG-----DSSKLNRPEDLQQQKMTMTQAKRVFLSGGHNLHID 274
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPL 85
L + L+G++ GG A +A++YPDR+ LIL P G P I L
Sbjct: 101 LDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKL 155
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPL 85
L + L+G++ GG A +A++YPDR+ LIL P G P I L
Sbjct: 101 LDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKL 155
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 40/212 (18%)
Query: 30 ELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARM 89
+L L + L+G+S GG A +A+ YP R L+L P G P
Sbjct: 122 QLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPD----------- 170
Query: 90 IGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAIT-EYIFQCNVQAP 148
P V L ++ V R +L + F V+ D + IT E + Q A
Sbjct: 171 ------------PTEGVKRLSKFSVAPTRENL-EAFLRVMVYDKNLITPELVDQRFALAS 217
Query: 149 SGESAFHTLTEGLGYAKRPM--------LHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIK 200
+ ES T G +A ++R+ Q PV +I+G V+ G +
Sbjct: 218 TPESLTATRAMGKSFAGADFEAGMMWREVYRLRQ-----PVLLIWGREDRVNPLDGALV- 271
Query: 201 EARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232
A Q+ GH V ++ D FNK+
Sbjct: 272 -ALKTIPRAQLHVFGQCGHWVQVEKFDEFNKL 302
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPL 85
L + L+G++ GG A +A++YPDR+ LIL P G P I L
Sbjct: 101 LDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKL 155
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 2 GRSSRP---RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
GRS P +F+ D E + + S K +++ L+G ++GG LA AYA++Y D
Sbjct: 67 GRSEEPDQSKFTIDYGVEEAEALRS-----KLFGNEKVFLMGSAYGGALALAYAVKYQDH 121
Query: 59 VKHLILA 65
+K LI++
Sbjct: 122 LKGLIVS 128
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPL 85
L + L+G++ GG A +A++YPDR+ LIL P G P I L
Sbjct: 98 LDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKL 152
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 2 GRSSRP---RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
GRS P +F+ D E + + S K +++ L G S+GG LA AYA++Y D
Sbjct: 67 GRSEEPDQSKFTIDYGVEEAEALRS-----KLFGNEKVFLXGSSYGGALALAYAVKYQDH 121
Query: 59 VKHLILA 65
+K LI++
Sbjct: 122 LKGLIVS 128
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 40/212 (18%)
Query: 30 ELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARM 89
+L L + L+G++ GG A +A+ YP R L+L P G P
Sbjct: 102 QLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPD----------- 150
Query: 90 IGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAIT-EYIFQCNVQAP 148
P V L ++ V R +L + F V+ D + IT E + Q A
Sbjct: 151 ------------PTEGVKRLSKFSVAPTRENL-EAFLRVMVYDKNLITPELVDQRFALAS 197
Query: 149 SGESAFHTLTEGLGYAKRPM--------LHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIK 200
+ ES T G +A ++R+ Q PV +I+G V+ G +
Sbjct: 198 TPESLTATRAMGKSFAGADFEAGMMWREVYRLRQ-----PVLLIWGREDRVNPLDGALV- 251
Query: 201 EARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232
A Q+ GH V ++ D FNK+
Sbjct: 252 -ALKTIPRAQLHVFGQCGHWVQVEKFDEFNKL 282
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 13 PETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
P T + L T IE + + + IL GHS+GGYLA A A D+ + L P
Sbjct: 68 PSTSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCP 122
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 13 PETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
P T + L T IE + + + IL GHS+GGYLA A A D+ + L P
Sbjct: 68 PSTSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCP 122
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69
L++++ ++G+SFGG LA A A++Y +RV ++L G
Sbjct: 92 LEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVG 130
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 20 LVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLIL 64
LV IE R L + + G S+G LA AYA +P +V L+L
Sbjct: 88 LVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVL 132
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 1 FGRSSRPRFSTD--PETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
+G SS P + E + +++VT +++ L L + + +GH +GG L + A+ YP+R
Sbjct: 296 YGESSAPPEIEEYCMEVLCKEMVTFLDK----LGLSQAVFIGHDWGGMLVWYMALFYPER 351
Query: 59 VKHL-------ILADPWGFPQKSI 75
V+ + I A+P P +SI
Sbjct: 352 VRAVASLNTPFIPANPNMSPLESI 375
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 1 FGRSSRPRFSTD--PETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
+G SS P + E + +++VT +++ L L + + +GH +GG L + A+ YP+R
Sbjct: 77 YGESSAPPEIEEYCMEVLCKEMVTFLDK----LGLSQAVFIGHDWGGMLVWYMALFYPER 132
Query: 59 VKHL-------ILADPWGFPQKSI 75
V+ + I A+P P +SI
Sbjct: 133 VRAVASLNTPFIPANPNMSPLESI 156
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDP 77
R ++ ++ +K+ + LLGHS GG +A A + P ++L P +P
Sbjct: 115 RDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL----ANP 170
Query: 78 QKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDL 121
+ A+ + A + NL + P +GP+ V+ + + ++
Sbjct: 171 ESATTFKVLAAKVLNL------VLPNLSLGPIDSSVLSRNKTEV 208
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 37 ILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKN 96
+++GHS GG+ A A + P+ LIL +P +K+I + P ++ NLY +
Sbjct: 140 VVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNS 199
Query: 97 F 97
Sbjct: 200 L 200
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 1 FGRSSRPRFSTD--PETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
+G SS P + E + +++VT +++ L L + + +GH +GG L + A+ YP+R
Sbjct: 92 YGESSAPPEIEEYCMEVLCKEMVTFLDK----LGLSQAVFIGHDWGGMLVWYMALFYPER 147
Query: 59 VKHL-------ILADPWGFPQKSI 75
V+ + I A+P P +SI
Sbjct: 148 VRAVASLNTPFIPANPNMSPLESI 171
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69
L++++ ++G++FGG LA A A++Y +RV ++L G
Sbjct: 92 LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAG 130
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 30 ELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLIL 64
+L + ++ LLG+S GG+ + A+ +++P+RV L+L
Sbjct: 103 QLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVL 137
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 27 WRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63
W + L L +++I +GH +G LAF YA ++ DR+K ++
Sbjct: 104 WFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 27 WRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63
W + L L +++I +GH +G LAF YA ++ DR+K ++
Sbjct: 103 WFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 27 WRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63
W + L L +++I +GH +G LAF YA ++ DR+K ++
Sbjct: 104 WFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDP 77
R ++ ++ +K+ + LLGHS GG +A A + P ++L P +P
Sbjct: 116 RDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL----ANP 171
Query: 78 QKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDL 121
+ A+ + A + NL + P +GP+ V+ + + ++
Sbjct: 172 ESATTFKVLAAKVLNL------VLPNLSLGPIDSSVLSRNKTEV 209
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 27 WRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63
W + L L +++I +GH +G LAF YA ++ DR+K ++
Sbjct: 103 WFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDP 77
R ++ ++ +K+ + LLGHS GG +A A + P ++L P +P
Sbjct: 98 RDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL----ANP 153
Query: 78 QKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDL 121
+ A+ + A K N + P GP+ V+ + + ++
Sbjct: 154 ESATTFKVLAA------KVLNSVLPNLSSGPIDSSVLSRNKTEV 191
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 24 IEEWRKELKLQEMI------------LLGHSFGGYLAFAYAIQYPDRVKHLI-LADPWGF 70
IEE+ EL +EM+ +GH + G + + A+ YP+RV+ + L P+
Sbjct: 303 IEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMP 362
Query: 71 PQKSIDPQKASK-IPLW 86
P + P K + IP++
Sbjct: 363 PDPDVSPMKVIRSIPVF 379
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDP 77
R ++ ++ +K+ + LLGHS GG +A A + P +L P +P
Sbjct: 115 RDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVL----ANP 170
Query: 78 QKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDL 121
+ A+ + A + NL + P +GP+ V+ + + ++
Sbjct: 171 ESATTFKVLAAKVLNL------VLPNLSLGPIDSSVLSRNKTEV 208
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 29 KELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
+ L L+E + +GHS G + +I+ P+ HL++ P
Sbjct: 85 EALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGP 123
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 1 FGRSSRPRFSTDPETV---ERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD 57
+G SSRP ++ P + +R + E +L ++ ++GH G +A A+ +P
Sbjct: 62 YGDSSRP--ASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPH 119
Query: 58 RVKHLILAD 66
RVK L L D
Sbjct: 120 RVKKLALLD 128
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRV 59
+G R + DP E + V++ W +E L E+ ++G+S+GGY+ P
Sbjct: 383 YGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLF 442
Query: 60 K 60
K
Sbjct: 443 K 443
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRV 59
+G R + DP E + V++ W +E L E+ ++G+S+GGY+ P
Sbjct: 403 YGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLF 462
Query: 60 K 60
K
Sbjct: 463 K 463
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRV 59
+G R + DP E + V++ W +E L E+ ++G+S+GGY+ P
Sbjct: 403 YGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLF 462
Query: 60 K 60
K
Sbjct: 463 K 463
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRV 59
+G R + DP E + V++ W +E L E+ ++G+S+GGY+ P
Sbjct: 403 YGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLF 462
Query: 60 K 60
K
Sbjct: 463 K 463
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRV 59
+G R + DP E + V++ W +E L E+ ++G+S+GGY+ P
Sbjct: 403 YGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLF 462
Query: 60 K 60
K
Sbjct: 463 K 463
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 12 DPETVERQLVTS---------------IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56
DPET+++ L S I+E E ++ L+GHS G + Y P
Sbjct: 91 DPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSP 150
Query: 57 DR---VKHLILADP-WG 69
+R V HLIL D WG
Sbjct: 151 ERAAKVAHLILLDGVWG 167
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 12 DPETVERQLVTS---------------IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56
DPET+++ L S I+E E ++ L+GHS G + Y P
Sbjct: 91 DPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSP 150
Query: 57 DR---VKHLILADP-WG 69
+R V HLIL D WG
Sbjct: 151 ERAAKVAHLILLDGVWG 167
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 1 FGRSSRPRFSTDPETVE-RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
+G SS+P + D R + + E + L + L+GH+ GG A+ +PD V
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSV 121
Query: 60 KHLILAD 66
L + D
Sbjct: 122 LSLAVLD 128
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 12 DPETVERQLVTS---------------IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56
DPET+++ L S I+E E ++ L+GHS G + Y P
Sbjct: 91 DPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSP 150
Query: 57 DR---VKHLILADP-WG 69
+R V HLIL D WG
Sbjct: 151 ERAAKVAHLILLDGVWG 167
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 11 TDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILA 65
D E + + +E R+ L + + GHS GG LA YA + + + +I+
Sbjct: 68 NDSEYSXTETIKDLEAIREALYINKWGFAGHSAGGXLALVYATEAQESLTKIIVG 122
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 1 FGRSSRPRFSTDPETVE-RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
+G SS+P + D R + + E + L + L+GH GG A+ +PD V
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSV 121
Query: 60 KHLILAD 66
L + D
Sbjct: 122 LSLAVLD 128
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 66 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 121
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 2 GRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 67 GKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 121
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 2 GRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 70 GKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 33 LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
++ + L+GHS GG +A A YPD +K ++L P
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 12 DPETVERQLVTS---------------IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56
DPET+++ L S I+E E ++ L+GH+ G + Y P
Sbjct: 91 DPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHAMGTFFLVRYVNSSP 150
Query: 57 DR---VKHLILADP-WG 69
+R V HLIL D WG
Sbjct: 151 ERAAKVAHLILLDGVWG 167
>pdb|2B61|A Chain A, Crystal Structure Of Homoserine Transacetylase
Length = 377
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 3 RSSRPRFSTDPETVERQLVTSIEEWRKELKLQEM-ILLGHSFGGYLAFAYAIQYPDRVKH 61
++ +P S P V + +V + + L + + ++G SFGG A +AI YPD +
Sbjct: 122 QTGKPYGSQFPNIVVQDIVKVQKALLEHLGISHLKAIIGGSFGGXQANQWAIDYPDFXDN 181
Query: 62 LI 63
++
Sbjct: 182 IV 183
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+G S P + ER +++ K LK +++ LLG S GG A A +YP +
Sbjct: 62 YGHSRPPDRDFPADFFERDAKDAVD-LMKALKFKKVSLLGWSNGGITALIAAAKYPSYIH 120
Query: 61 HLILADPWG 69
+++ WG
Sbjct: 121 KMVI---WG 126
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 8 RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
+F E +R L ++E +E++ Q LG+++ F AI+Y +R HL +A
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR--HLAIAQE 335
Query: 68 WG 69
G
Sbjct: 336 LG 337
>pdb|1YVF|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00729145
pdb|1Z4U|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00799585
Length = 577
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 123 KKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQ 174
+ F + E+ + E I+QC AP A +LTE L Y PM + Q
Sbjct: 223 RCFDSTVTENDIRVEESIYQCCDLAPEARQAIRSLTERL-YVGGPMTNSKGQ 273
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+G S P + ER +++ K LK +++ LLG S GG A A +YP +
Sbjct: 62 YGHSRPPDRDFPADFFERDAKDAVD-LMKALKFKKVSLLGWSDGGITALIAAAKYPSYIH 120
Query: 61 HLILADPWG 69
+++ WG
Sbjct: 121 KMVI---WG 126
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 33 LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
++ + L+GH+ GG +A A YPD +K ++L P
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 33 LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
++ + L+GH+ GG +A A YPD +K ++L P
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + R L IE + L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDDHVRYLDAFIEA----VGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFG 44
FG+SS+P D +T L T +E L LQ+ +L+G S G
Sbjct: 61 FGQSSQPTTGYDYDTFAADLNTVLE----TLDLQDAVLVGFSMG 100
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFG 44
FG+SS+P D +T L T +E L LQ+ +L+G S G
Sbjct: 61 FGQSSQPTTGYDYDTFAADLNTVLE----TLDLQDAVLVGFSMG 100
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 29 KELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILAD 66
+ L IL+GHS G + A +YPD V+ ++ D
Sbjct: 129 RTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAID 166
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIE---EWRKELKLQEM--ILLGHSFGGYLAFAYAIQY 55
FG S R T+ TVE+ L E R++L Q+ I G S+GG L+ ++Y
Sbjct: 93 FGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKY 152
Query: 56 PDRVKHLILA 65
P V + A
Sbjct: 153 PHLVAGALAA 162
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILAD 66
L++ + +GHS GG A PDR+ L+ D
Sbjct: 78 LQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+G S P + ER +++ K LK +++ LLG + GG A A +YP +
Sbjct: 62 YGHSRPPDRDFPADFFERDAKDAVD-LMKALKFKKVSLLGWADGGITALIAAAKYPSYIH 120
Query: 61 HLILADPWG 69
+++ WG
Sbjct: 121 KMVI---WG 126
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFG 44
FG+SS+P D +T L T +E L LQ+ +L+G S G
Sbjct: 62 FGQSSQPTTGYDYDTFAADLNTVLE----TLDLQDAVLVGFSMG 101
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFG 44
FG+SS+P D +T L T +E L LQ+ +L+G S G
Sbjct: 61 FGQSSQPTTGYDYDTFAADLNTVLE----TLDLQDAVLVGFSTG 100
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 7 PRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILAD 66
PR ETV+ IE + + +E+IL+G SFGG A +P ++K L+ +
Sbjct: 46 PRPIQAVETVDEYSKPLIETLKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLN 105
Query: 67 PW 68
+
Sbjct: 106 AF 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,722,859
Number of Sequences: 62578
Number of extensions: 330534
Number of successful extensions: 780
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 86
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)