Query psy17711
Match_columns 335
No_of_seqs 406 out of 1805
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 21:03:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4409|consensus 100.0 1.7E-31 3.8E-36 223.0 18.3 237 1-240 127-364 (365)
2 PLN02824 hydrolase, alpha/beta 99.9 6.3E-23 1.4E-27 178.4 17.0 223 1-239 66-293 (294)
3 TIGR02240 PHA_depoly_arom poly 99.9 3.3E-22 7.1E-27 172.3 18.0 208 1-244 62-270 (276)
4 PLN02965 Probable pheophorbida 99.9 5.4E-22 1.2E-26 168.9 18.4 211 1-241 41-254 (255)
5 PRK03592 haloalkane dehalogena 99.9 1.2E-21 2.6E-26 170.4 19.1 216 1-241 64-290 (295)
6 PLN03087 BODYGUARD 1 domain co 99.9 4.1E-22 8.9E-27 180.5 16.0 221 1-240 243-479 (481)
7 KOG4178|consensus 99.9 8.8E-22 1.9E-26 164.6 15.6 225 1-240 82-320 (322)
8 PLN02679 hydrolase, alpha/beta 99.9 4.7E-22 1E-26 177.2 14.7 224 1-241 125-358 (360)
9 PLN02894 hydrolase, alpha/beta 99.9 2.3E-21 5E-26 174.6 18.9 239 1-243 142-388 (402)
10 TIGR03343 biphenyl_bphD 2-hydr 99.9 2.5E-21 5.4E-26 167.3 18.2 210 1-238 71-281 (282)
11 PRK06489 hypothetical protein; 99.9 6.1E-21 1.3E-25 170.3 17.5 227 1-242 116-359 (360)
12 PRK00870 haloalkane dehalogena 99.9 3.4E-21 7.5E-26 168.1 14.2 211 1-240 84-301 (302)
13 PRK10673 acyl-CoA esterase; Pr 99.9 7.3E-21 1.6E-25 161.9 15.8 198 1-239 53-254 (255)
14 PRK03204 haloalkane dehalogena 99.9 1.9E-20 4.2E-25 161.8 17.4 209 1-237 71-285 (286)
15 TIGR03056 bchO_mg_che_rel puta 99.9 2.5E-20 5.4E-25 160.6 17.8 213 1-238 65-278 (278)
16 PLN03084 alpha/beta hydrolase 99.9 4.4E-20 9.5E-25 164.1 19.4 213 1-238 164-382 (383)
17 KOG1454|consensus 99.9 9.5E-21 2.1E-25 164.7 14.6 222 1-240 97-324 (326)
18 PRK10349 carboxylesterase BioH 99.9 2.3E-20 5.1E-25 159.0 16.4 204 1-239 50-255 (256)
19 PRK07581 hypothetical protein; 99.9 1.4E-20 3E-25 166.9 15.5 68 169-241 268-337 (339)
20 TIGR03611 RutD pyrimidine util 99.9 3.6E-20 7.7E-25 157.4 17.2 206 1-238 50-256 (257)
21 PLN02578 hydrolase 99.8 6E-20 1.3E-24 163.5 18.0 221 1-238 123-353 (354)
22 PRK00175 metX homoserine O-ace 99.8 2.4E-19 5.3E-24 160.8 21.5 219 14-242 126-376 (379)
23 PLN02385 hydrolase; alpha/beta 99.8 4E-20 8.7E-25 164.5 15.8 207 1-240 126-345 (349)
24 PRK11126 2-succinyl-6-hydroxy- 99.8 9.1E-20 2E-24 154.0 16.2 202 1-239 38-241 (242)
25 TIGR01392 homoserO_Ac_trn homo 99.8 1.5E-19 3.2E-24 160.9 17.3 212 14-238 106-351 (351)
26 PRK08775 homoserine O-acetyltr 99.8 5.3E-19 1.1E-23 156.9 19.1 205 15-241 118-340 (343)
27 PRK06765 homoserine O-acetyltr 99.8 1.2E-19 2.6E-24 161.6 15.0 222 13-239 139-387 (389)
28 TIGR01738 bioH putative pimelo 99.8 2.7E-19 5.8E-24 150.6 15.9 204 1-237 41-245 (245)
29 PRK10749 lysophospholipase L2; 99.8 5.6E-19 1.2E-23 155.8 17.9 221 1-239 92-328 (330)
30 TIGR02427 protocat_pcaD 3-oxoa 99.8 2.1E-19 4.5E-24 151.8 14.2 201 1-238 50-251 (251)
31 TIGR01250 pro_imino_pep_2 prol 99.8 8.7E-19 1.9E-23 151.2 18.3 213 1-238 64-288 (288)
32 PF12697 Abhydrolase_6: Alpha/ 99.8 2.9E-20 6.3E-25 154.5 7.5 193 1-232 35-228 (228)
33 TIGR03695 menH_SHCHC 2-succiny 99.8 4.2E-18 9E-23 143.6 17.8 211 1-238 38-251 (251)
34 PF00561 Abhydrolase_1: alpha/ 99.8 8.7E-20 1.9E-24 152.5 6.8 210 1-234 11-229 (230)
35 PLN02298 hydrolase, alpha/beta 99.8 3E-18 6.4E-23 151.5 15.8 205 1-240 98-317 (330)
36 PHA02857 monoglyceride lipase; 99.8 6.4E-18 1.4E-22 145.6 15.8 201 1-239 63-272 (276)
37 PLN02211 methyl indole-3-aceta 99.8 1.3E-17 2.8E-22 142.9 14.7 213 1-240 56-270 (273)
38 COG2267 PldB Lysophospholipase 99.8 7.6E-17 1.7E-21 139.0 18.5 213 1-240 72-294 (298)
39 PLN02980 2-oxoglutarate decarb 99.8 2.4E-17 5.1E-22 170.4 18.1 220 1-242 1408-1641(1655)
40 KOG1455|consensus 99.8 7.8E-18 1.7E-22 138.9 10.8 207 1-240 93-309 (313)
41 PRK14875 acetoin dehydrogenase 99.7 4.1E-17 9E-22 146.6 16.1 199 1-239 168-370 (371)
42 KOG2382|consensus 99.7 5.4E-17 1.2E-21 136.2 15.5 209 1-240 91-313 (315)
43 KOG2984|consensus 99.7 7.9E-18 1.7E-22 129.9 7.5 192 1-240 82-276 (277)
44 TIGR01249 pro_imino_pep_1 prol 99.7 8.6E-17 1.9E-21 140.6 14.7 68 1-70 64-131 (306)
45 PLN02652 hydrolase; alpha/beta 99.7 2.3E-16 5.1E-21 141.2 17.5 205 1-241 174-388 (395)
46 TIGR01607 PST-A Plasmodium sub 99.7 5.6E-16 1.2E-20 136.5 16.4 212 1-238 85-331 (332)
47 PLN02511 hydrolase 99.6 3.7E-15 8.1E-20 133.9 11.6 68 170-242 292-367 (388)
48 PRK05855 short chain dehydroge 99.6 9E-15 2E-19 139.3 12.7 60 178-241 233-293 (582)
49 PRK05077 frsA fermentation/res 99.6 1.6E-13 3.5E-18 124.0 17.3 57 178-240 355-412 (414)
50 KOG1552|consensus 99.6 2.8E-14 6E-19 115.8 10.9 154 1-242 99-254 (258)
51 TIGR03100 hydr1_PEP hydrolase, 99.6 1.7E-13 3.7E-18 117.6 16.0 194 1-239 68-274 (274)
52 TIGR01836 PHA_synth_III_C poly 99.6 4.9E-14 1.1E-18 125.5 12.8 60 178-239 286-349 (350)
53 COG1647 Esterase/lipase [Gener 99.6 1.2E-13 2.5E-18 109.0 13.1 175 16-239 64-243 (243)
54 PRK10985 putative hydrolase; P 99.5 1.4E-13 3E-18 121.2 13.9 66 170-240 249-320 (324)
55 PRK13604 luxD acyl transferase 99.5 2.9E-12 6.3E-17 109.0 19.5 65 170-242 196-261 (307)
56 TIGR01838 PHA_synth_I poly(R)- 99.5 4.8E-13 1E-17 123.0 14.4 53 171-228 410-463 (532)
57 COG2021 MET2 Homoserine acetyl 99.5 1.1E-12 2.4E-17 112.0 15.5 213 13-239 125-367 (368)
58 PF03096 Ndr: Ndr family; Int 99.5 8.2E-13 1.8E-17 110.0 14.2 199 15-240 80-279 (283)
59 KOG2931|consensus 99.5 3.6E-12 7.8E-17 104.7 16.3 201 15-241 103-307 (326)
60 COG0596 MhpC Predicted hydrola 99.5 2.3E-12 5E-17 109.0 15.7 55 16-70 70-124 (282)
61 PRK11071 esterase YqiA; Provis 99.5 7E-13 1.5E-17 107.1 10.9 144 18-238 45-189 (190)
62 PRK07868 acyl-CoA synthetase; 99.4 1.7E-12 3.7E-17 130.1 13.7 68 172-244 293-365 (994)
63 PF00326 Peptidase_S9: Prolyl 99.4 9.1E-12 2E-16 103.0 14.9 159 18-240 46-209 (213)
64 PLN02872 triacylglycerol lipas 99.4 3.9E-12 8.4E-17 113.7 12.1 66 174-241 321-390 (395)
65 COG3208 GrsT Predicted thioest 99.4 1.2E-11 2.5E-16 100.0 12.4 179 14-240 53-236 (244)
66 KOG4391|consensus 99.3 5.2E-12 1.1E-16 99.1 5.2 162 1-243 117-285 (300)
67 PRK11460 putative hydrolase; P 99.3 1.1E-10 2.3E-15 97.6 13.5 58 178-239 148-207 (232)
68 KOG2564|consensus 99.3 7.3E-12 1.6E-16 102.1 5.7 63 1-67 113-180 (343)
69 PRK10566 esterase; Provisional 99.3 6.6E-11 1.4E-15 100.3 11.9 58 178-239 186-247 (249)
70 PLN02442 S-formylglutathione h 99.2 6.4E-10 1.4E-14 95.9 15.2 53 17-69 126-178 (283)
71 TIGR02821 fghA_ester_D S-formy 99.2 8.6E-10 1.9E-14 94.8 15.7 52 18-69 119-173 (275)
72 TIGR01849 PHB_depoly_PhaZ poly 99.2 2.5E-10 5.4E-15 101.2 11.4 223 13-239 148-405 (406)
73 PF02230 Abhydrolase_2: Phosph 99.2 5.5E-10 1.2E-14 92.5 12.4 125 17-239 83-214 (216)
74 PF06342 DUF1057: Alpha/beta h 99.2 2.4E-09 5.1E-14 88.5 15.5 69 1-74 73-142 (297)
75 PF12695 Abhydrolase_5: Alpha/ 99.2 5E-10 1.1E-14 86.4 11.2 87 31-220 58-145 (145)
76 KOG4667|consensus 99.1 2.9E-09 6.3E-14 83.9 12.2 167 18-238 86-256 (269)
77 COG0400 Predicted esterase [Ge 99.0 5.5E-09 1.2E-13 84.5 11.5 122 16-239 79-204 (207)
78 TIGR01839 PHA_synth_II poly(R) 99.0 8.5E-09 1.9E-13 94.3 12.8 59 14-72 264-331 (560)
79 PF06821 Ser_hydrolase: Serine 99.0 5.9E-09 1.3E-13 82.3 10.1 119 18-227 40-160 (171)
80 COG1506 DAP2 Dipeptidyl aminop 98.9 9E-09 1.9E-13 98.2 12.0 62 178-239 551-615 (620)
81 PF08840 BAAT_C: BAAT / Acyl-C 98.9 5.4E-09 1.2E-13 86.0 7.8 38 34-72 22-59 (213)
82 PF08538 DUF1749: Protein of u 98.9 2.6E-08 5.6E-13 84.2 12.0 43 32-74 106-153 (303)
83 PF05728 UPF0227: Uncharacteri 98.9 4.2E-08 9.1E-13 78.4 12.4 53 15-70 40-92 (187)
84 PF01738 DLH: Dienelactone hyd 98.9 3.3E-08 7.1E-13 82.0 11.2 47 178-224 145-193 (218)
85 COG3243 PhaC Poly(3-hydroxyalk 98.8 4.6E-08 1E-12 85.2 12.0 57 18-74 165-222 (445)
86 COG3545 Predicted esterase of 98.8 7E-08 1.5E-12 74.0 11.5 132 17-239 43-178 (181)
87 PF00975 Thioesterase: Thioest 98.8 4.2E-08 9.1E-13 82.0 11.5 56 14-69 45-104 (229)
88 KOG2565|consensus 98.8 1.1E-07 2.3E-12 81.2 13.3 224 1-241 199-464 (469)
89 COG2945 Predicted hydrolase of 98.8 7.4E-08 1.6E-12 74.9 10.0 56 178-238 149-205 (210)
90 TIGR03101 hydr2_PEP hydrolase, 98.8 3.7E-08 8E-13 83.4 8.6 65 1-69 67-134 (266)
91 PF06500 DUF1100: Alpha/beta h 98.7 4.3E-07 9.3E-12 80.2 12.9 51 19-69 243-296 (411)
92 PF06028 DUF915: Alpha/beta hy 98.7 1.2E-06 2.6E-11 73.5 14.7 60 178-238 184-253 (255)
93 COG3571 Predicted hydrolase of 98.7 9.7E-07 2.1E-11 66.5 12.5 51 18-68 73-123 (213)
94 COG0429 Predicted hydrolase of 98.6 2.1E-07 4.6E-12 78.8 9.7 67 170-241 268-341 (345)
95 TIGR01840 esterase_phb esteras 98.6 9.3E-07 2E-11 72.9 12.5 50 20-69 79-130 (212)
96 KOG1838|consensus 98.6 1.2E-06 2.6E-11 76.9 13.4 70 169-242 315-390 (409)
97 TIGR03230 lipo_lipase lipoprot 98.6 2.6E-07 5.6E-12 83.2 9.0 53 18-70 97-155 (442)
98 PF09752 DUF2048: Uncharacteri 98.5 1.8E-06 3.8E-11 74.4 12.8 57 179-239 290-348 (348)
99 COG0412 Dienelactone hydrolase 98.5 1.9E-06 4.1E-11 72.0 12.7 109 18-224 90-206 (236)
100 PF05448 AXE1: Acetyl xylan es 98.5 4.1E-06 8.9E-11 73.1 14.9 160 18-239 153-319 (320)
101 PLN00021 chlorophyllase 98.5 1.6E-06 3.5E-11 75.5 11.8 37 32-68 124-165 (313)
102 PF10230 DUF2305: Uncharacteri 98.4 1.5E-06 3.2E-11 74.1 9.9 61 12-72 56-125 (266)
103 PRK10162 acetyl esterase; Prov 98.4 1.4E-05 3.1E-10 70.1 16.1 61 178-239 248-314 (318)
104 PF06057 VirJ: Bacterial virul 98.4 5.2E-06 1.1E-10 65.4 11.1 52 17-68 47-106 (192)
105 PRK05371 x-prolyl-dipeptidyl a 98.3 2.9E-05 6.2E-10 75.7 17.1 71 167-240 446-519 (767)
106 KOG2551|consensus 98.3 9E-06 1.9E-10 65.0 11.2 60 178-243 163-223 (230)
107 cd00707 Pancreat_lipase_like P 98.3 1.5E-06 3.3E-11 74.5 7.3 54 17-70 89-148 (275)
108 KOG3043|consensus 98.3 3.3E-06 7.1E-11 67.5 7.8 64 178-241 164-238 (242)
109 PRK10115 protease 2; Provision 98.3 1.1E-05 2.4E-10 77.9 12.8 52 16-68 504-558 (686)
110 PTZ00472 serine carboxypeptida 98.3 3.7E-05 8E-10 70.8 15.5 69 1-71 133-218 (462)
111 PLN02733 phosphatidylcholine-s 98.2 4.4E-06 9.5E-11 75.7 8.2 53 17-69 145-201 (440)
112 PF07859 Abhydrolase_3: alpha/ 98.2 9.3E-06 2E-10 66.8 9.4 55 15-69 47-110 (211)
113 PRK04940 hypothetical protein; 98.2 9.1E-05 2E-09 58.2 14.0 51 18-71 40-94 (180)
114 PF10503 Esterase_phd: Esteras 98.2 5.4E-05 1.2E-09 62.1 12.3 51 20-70 81-133 (220)
115 PF03959 FSH1: Serine hydrolas 98.1 1.1E-05 2.4E-10 66.5 8.3 46 178-226 161-207 (212)
116 PRK10252 entF enterobactin syn 98.1 5.3E-05 1.2E-09 79.3 13.9 55 14-68 1112-1170(1296)
117 TIGR00976 /NonD putative hydro 98.1 4.4E-05 9.5E-10 72.3 11.6 64 1-69 64-132 (550)
118 PF03403 PAF-AH_p_II: Platelet 98.0 1.1E-05 2.5E-10 72.1 6.6 36 33-69 227-262 (379)
119 PF11339 DUF3141: Protein of u 98.0 7.4E-05 1.6E-09 67.3 11.3 56 14-69 115-175 (581)
120 COG4757 Predicted alpha/beta h 98.0 6E-05 1.3E-09 60.7 9.6 63 172-237 212-280 (281)
121 COG3319 Thioesterase domains o 98.0 0.00045 9.9E-09 58.0 14.6 57 14-70 44-104 (257)
122 COG3458 Acetyl esterase (deace 98.0 7.6E-05 1.7E-09 61.6 9.6 143 32-240 174-317 (321)
123 PF10142 PhoPQ_related: PhoPQ- 97.9 6.2E-05 1.4E-09 66.3 9.4 61 178-243 262-323 (367)
124 PRK10439 enterobactin/ferric e 97.8 0.0005 1.1E-08 62.3 13.8 51 18-68 267-322 (411)
125 KOG2624|consensus 97.8 7.7E-05 1.7E-09 66.5 8.3 64 177-241 331-399 (403)
126 COG4099 Predicted peptidase [G 97.8 6.9E-05 1.5E-09 62.6 7.3 51 18-68 250-303 (387)
127 KOG4627|consensus 97.8 6.7E-05 1.5E-09 59.2 6.6 44 178-224 207-251 (270)
128 smart00824 PKS_TE Thioesterase 97.8 0.00045 9.8E-09 56.4 12.0 54 16-69 45-102 (212)
129 PF02273 Acyl_transf_2: Acyl t 97.8 0.001 2.2E-08 54.3 13.2 180 2-241 70-253 (294)
130 PF08386 Abhydrolase_4: TAP-li 97.8 7E-05 1.5E-09 53.8 6.1 59 178-239 34-93 (103)
131 PF07819 PGAP1: PGAP1-like pro 97.8 8.1E-05 1.8E-09 61.7 7.0 52 19-70 65-124 (225)
132 PF05705 DUF829: Eukaryotic pr 97.7 0.0012 2.5E-08 55.6 13.4 61 177-237 177-240 (240)
133 KOG3975|consensus 97.7 0.0014 3.1E-08 53.5 12.9 58 178-237 242-300 (301)
134 COG4814 Uncharacterized protei 97.6 0.001 2.2E-08 54.5 11.2 46 25-70 127-177 (288)
135 KOG1551|consensus 97.6 0.00047 1E-08 56.7 9.3 58 181-242 309-368 (371)
136 KOG3253|consensus 97.6 0.0002 4.4E-09 65.4 7.6 62 178-241 304-375 (784)
137 KOG2112|consensus 97.5 0.0011 2.5E-08 52.8 9.8 52 16-67 70-126 (206)
138 KOG1553|consensus 97.5 0.00035 7.7E-09 59.6 6.6 62 1-67 279-343 (517)
139 KOG1515|consensus 97.4 0.0078 1.7E-07 52.8 15.0 57 18-74 144-212 (336)
140 COG0657 Aes Esterase/lipase [L 97.4 0.0044 9.5E-08 54.4 13.5 56 15-70 128-192 (312)
141 KOG2100|consensus 97.4 0.0013 2.9E-08 64.2 11.1 151 17-239 589-746 (755)
142 KOG3847|consensus 97.4 0.00043 9.4E-09 58.3 6.4 60 178-238 287-346 (399)
143 PF02129 Peptidase_S15: X-Pro 97.4 0.0014 3E-08 56.3 9.8 52 19-70 81-137 (272)
144 KOG4840|consensus 97.4 0.0017 3.7E-08 52.1 8.9 56 15-70 84-145 (299)
145 PF03583 LIP: Secretory lipase 97.3 0.00026 5.6E-09 61.2 4.4 46 178-223 219-267 (290)
146 cd00741 Lipase Lipase. Lipase 97.3 0.00083 1.8E-08 52.2 6.6 52 18-69 8-67 (153)
147 KOG2281|consensus 97.3 0.0017 3.7E-08 60.0 9.1 155 16-239 706-866 (867)
148 PF12740 Chlorophyllase2: Chlo 97.2 0.0052 1.1E-07 51.5 10.9 36 33-68 90-130 (259)
149 PF02450 LCAT: Lecithin:choles 97.2 0.0008 1.7E-08 60.7 6.2 52 19-70 101-161 (389)
150 PF04301 DUF452: Protein of un 97.2 0.0013 2.9E-08 53.3 6.8 41 32-74 55-95 (213)
151 PF00756 Esterase: Putative es 97.2 0.0011 2.3E-08 56.1 6.5 52 18-69 96-150 (251)
152 PF00151 Lipase: Lipase; Inte 97.1 0.0012 2.7E-08 57.9 6.6 48 24-71 138-189 (331)
153 PF01764 Lipase_3: Lipase (cla 97.0 0.0019 4E-08 49.3 6.1 38 18-55 48-85 (140)
154 PF07224 Chlorophyllase: Chlor 97.0 0.014 3E-07 48.5 10.9 37 33-69 119-157 (307)
155 TIGR03502 lipase_Pla1_cef extr 96.8 0.0045 9.7E-08 60.1 8.0 39 16-54 521-575 (792)
156 PF01674 Lipase_2: Lipase (cla 96.8 0.0041 8.9E-08 51.1 6.7 37 18-55 60-96 (219)
157 PF12048 DUF3530: Protein of u 96.8 0.029 6.3E-07 48.9 12.3 42 27-68 186-228 (310)
158 PF11187 DUF2974: Protein of u 96.8 0.0046 9.9E-08 51.1 6.6 52 21-73 72-127 (224)
159 COG1770 PtrB Protease II [Amin 96.7 0.034 7.3E-07 52.1 12.6 54 15-68 506-561 (682)
160 PF10340 DUF2424: Protein of u 96.7 0.053 1.2E-06 48.0 12.8 62 11-72 172-238 (374)
161 COG1075 LipA Predicted acetylt 96.7 0.0031 6.7E-08 55.7 5.3 54 16-69 109-164 (336)
162 PF05990 DUF900: Alpha/beta hy 96.6 0.0052 1.1E-07 51.3 6.1 51 19-69 78-137 (233)
163 PF05577 Peptidase_S28: Serine 96.6 0.0068 1.5E-07 55.8 7.3 71 1-71 70-150 (434)
164 KOG3101|consensus 96.5 0.0015 3.2E-08 52.1 1.8 40 34-73 141-180 (283)
165 cd00519 Lipase_3 Lipase (class 96.3 0.0076 1.6E-07 50.3 5.4 28 28-55 122-149 (229)
166 COG4188 Predicted dienelactone 96.3 0.0059 1.3E-07 53.3 4.5 51 178-229 251-303 (365)
167 COG2819 Predicted hydrolase of 96.1 0.012 2.5E-07 49.2 5.4 51 19-69 119-172 (264)
168 PF06259 Abhydrolase_8: Alpha/ 96.1 0.023 5.1E-07 44.9 6.6 54 18-71 88-146 (177)
169 PF05057 DUF676: Putative seri 96.1 0.01 2.2E-07 49.0 4.8 36 18-53 60-97 (217)
170 PLN02162 triacylglycerol lipas 96.0 0.021 4.5E-07 51.7 6.7 36 18-53 262-297 (475)
171 COG4782 Uncharacterized protei 96.0 0.016 3.5E-07 50.4 5.6 53 16-68 173-233 (377)
172 PLN02571 triacylglycerol lipas 96.0 0.018 3.8E-07 51.6 6.0 37 18-54 208-246 (413)
173 PLN02454 triacylglycerol lipas 95.9 0.02 4.4E-07 51.2 6.3 37 18-54 210-248 (414)
174 PLN02606 palmitoyl-protein thi 95.9 0.5 1.1E-05 40.7 14.2 35 34-68 95-131 (306)
175 PLN02633 palmitoyl protein thi 95.9 0.72 1.6E-05 39.8 15.2 35 34-68 94-130 (314)
176 COG0627 Predicted esterase [Ge 95.9 0.012 2.6E-07 51.2 4.7 55 20-74 133-192 (316)
177 KOG2183|consensus 95.9 0.011 2.5E-07 52.0 4.3 54 15-68 142-201 (492)
178 PLN00413 triacylglycerol lipas 95.8 0.03 6.5E-07 50.8 6.9 36 18-53 268-303 (479)
179 COG3509 LpqC Poly(3-hydroxybut 95.8 0.034 7.5E-07 47.0 6.6 52 18-69 126-179 (312)
180 PF05677 DUF818: Chlamydia CHL 95.7 0.32 7E-06 42.3 12.3 39 18-56 192-237 (365)
181 PF11144 DUF2920: Protein of u 95.7 0.25 5.4E-06 44.1 12.0 65 178-242 293-370 (403)
182 COG2382 Fes Enterochelin ester 95.6 0.083 1.8E-06 44.9 8.3 35 35-69 178-212 (299)
183 KOG2369|consensus 95.5 0.016 3.4E-07 52.1 4.0 51 18-68 162-224 (473)
184 COG4287 PqaA PhoPQ-activated p 95.4 0.051 1.1E-06 47.3 6.6 63 178-245 329-392 (507)
185 COG3150 Predicted esterase [Ge 95.3 0.051 1.1E-06 41.9 5.4 54 16-72 41-94 (191)
186 PLN02408 phospholipase A1 95.2 0.036 7.8E-07 48.9 5.2 38 18-55 182-221 (365)
187 PF01083 Cutinase: Cutinase; 95.2 0.079 1.7E-06 42.3 6.7 52 19-70 66-123 (179)
188 COG4553 DepA Poly-beta-hydroxy 95.0 0.98 2.1E-05 38.4 12.7 66 178-243 339-410 (415)
189 PF11288 DUF3089: Protein of u 95.0 0.064 1.4E-06 43.4 5.7 40 16-55 76-116 (207)
190 PF07082 DUF1350: Protein of u 94.9 0.75 1.6E-05 38.3 11.6 33 35-67 91-123 (250)
191 PF05277 DUF726: Protein of un 94.8 0.086 1.9E-06 46.3 6.5 39 31-69 217-260 (345)
192 PLN02324 triacylglycerol lipas 94.8 0.075 1.6E-06 47.6 6.1 37 18-54 197-235 (415)
193 PLN02934 triacylglycerol lipas 94.8 0.065 1.4E-06 49.1 5.7 37 18-54 305-341 (515)
194 PLN02517 phosphatidylcholine-s 94.6 0.067 1.5E-06 49.9 5.5 52 18-69 193-263 (642)
195 PLN02310 triacylglycerol lipas 94.5 0.11 2.4E-06 46.5 6.4 37 18-54 189-229 (405)
196 PLN02802 triacylglycerol lipas 94.3 0.078 1.7E-06 48.6 5.1 38 18-55 312-351 (509)
197 COG1073 Hydrolases of the alph 94.3 0.12 2.6E-06 44.4 6.3 60 179-239 233-296 (299)
198 PLN02753 triacylglycerol lipas 94.2 0.086 1.9E-06 48.5 5.1 37 18-54 291-332 (531)
199 PLN02719 triacylglycerol lipas 93.9 0.11 2.3E-06 47.8 5.1 38 18-55 277-319 (518)
200 KOG3724|consensus 93.9 0.1 2.2E-06 50.0 5.1 34 35-68 183-219 (973)
201 PLN03037 lipase class 3 family 93.8 0.11 2.3E-06 47.8 5.0 37 18-54 298-338 (525)
202 PLN02761 lipase class 3 family 93.7 0.12 2.6E-06 47.5 5.1 37 18-54 272-314 (527)
203 COG2830 Uncharacterized protei 93.2 0.11 2.4E-06 39.7 3.4 38 34-73 57-94 (214)
204 PLN02847 triacylglycerol lipas 92.9 0.2 4.4E-06 46.8 5.3 23 32-54 249-271 (633)
205 PF00450 Peptidase_S10: Serine 92.8 0.24 5.1E-06 45.3 5.7 61 178-238 330-414 (415)
206 KOG2182|consensus 92.7 0.28 6.1E-06 44.7 5.8 70 1-70 129-208 (514)
207 KOG4569|consensus 92.6 0.22 4.7E-06 44.1 5.0 37 18-54 155-191 (336)
208 PF12715 Abhydrolase_7: Abhydr 92.2 0.13 2.8E-06 45.6 3.0 33 34-67 226-258 (390)
209 KOG2237|consensus 92.2 1.3 2.8E-05 41.8 9.4 52 16-68 529-583 (712)
210 cd00312 Esterase_lipase Estera 90.5 0.54 1.2E-05 44.1 5.6 48 23-70 163-214 (493)
211 PLN02213 sinapoylglucose-malat 90.4 0.93 2E-05 39.9 6.7 61 178-239 233-316 (319)
212 PF06850 PHB_depo_C: PHB de-po 90.1 0.5 1.1E-05 37.6 4.1 62 178-239 134-201 (202)
213 COG2936 Predicted acyl esteras 89.4 6.7 0.00014 37.0 11.4 47 23-69 111-159 (563)
214 PF02089 Palm_thioest: Palmito 88.5 1.5 3.2E-05 37.5 6.1 51 18-68 62-115 (279)
215 KOG3967|consensus 88.0 1.2 2.6E-05 36.0 5.0 43 26-68 182-226 (297)
216 KOG1202|consensus 87.8 9.3 0.0002 39.4 11.6 55 14-68 2161-2218(2376)
217 COG5153 CVT17 Putative lipase 87.2 1.4 3E-05 37.3 5.0 47 19-67 261-307 (425)
218 KOG4540|consensus 87.2 1.4 3E-05 37.3 5.0 47 19-67 261-307 (425)
219 PLN02209 serine carboxypeptida 86.9 2.4 5.1E-05 39.1 7.0 61 178-239 351-434 (437)
220 PLN03016 sinapoylglucose-malat 86.4 2.7 5.8E-05 38.7 7.0 61 178-239 347-430 (433)
221 KOG1282|consensus 84.9 2.3 5.1E-05 39.0 5.9 63 178-240 363-448 (454)
222 COG3946 VirJ Type IV secretory 84.5 1.7 3.6E-05 38.8 4.5 42 16-57 304-349 (456)
223 COG4947 Uncharacterized protei 84.2 1.4 3E-05 34.4 3.5 44 25-68 92-135 (227)
224 PF08237 PE-PPE: PE-PPE domain 84.1 3.2 6.9E-05 34.4 5.9 44 12-55 24-69 (225)
225 TIGR03712 acc_sec_asp2 accesso 84.1 16 0.00034 33.8 10.5 48 18-67 339-388 (511)
226 PF07519 Tannase: Tannase and 83.5 2.4 5.1E-05 39.6 5.4 69 178-246 353-433 (474)
227 PF00135 COesterase: Carboxyle 82.9 3.3 7.1E-05 39.2 6.3 56 15-70 184-246 (535)
228 TIGR00267 conserved hypothetic 82.7 4.2 9E-05 32.1 5.7 16 314-329 126-141 (169)
229 COG1505 Serine proteases of th 79.8 5.6 0.00012 37.5 6.2 50 17-67 481-533 (648)
230 PF13253 DUF4044: Protein of u 79.5 7 0.00015 21.6 4.2 29 291-319 5-33 (35)
231 TIGR02230 ATPase_gene1 F0F1-AT 78.6 4.1 9E-05 28.8 4.0 22 291-312 35-57 (100)
232 PF08041 PetM: PetM family of 77.7 6.2 0.00013 21.1 3.5 21 310-330 7-27 (31)
233 PRK11876 petM cytochrome b6-f 77.1 4.2 9E-05 21.9 2.8 23 307-329 6-28 (32)
234 PF05576 Peptidase_S37: PS-10 76.5 1 2.3E-05 40.3 0.6 67 1-68 99-168 (448)
235 PF00698 Acyl_transf_1: Acyl t 75.0 2.3 4.9E-05 37.4 2.4 32 24-55 74-105 (318)
236 KOG2385|consensus 74.6 8.1 0.00018 35.7 5.7 41 30-70 443-488 (633)
237 PF00450 Peptidase_S10: Serine 74.2 6.3 0.00014 35.9 5.2 55 16-70 111-182 (415)
238 COG2272 PnbA Carboxylesterase 73.9 3 6.5E-05 38.3 2.9 49 22-70 166-218 (491)
239 smart00827 PKS_AT Acyl transfe 72.5 4.9 0.00011 34.8 3.9 31 24-54 72-102 (298)
240 PF08113 CoxIIa: Cytochrome c 72.2 13 0.00029 20.1 3.9 17 312-328 15-31 (34)
241 PF04277 OAD_gamma: Oxaloaceta 72.0 11 0.00023 25.3 4.6 30 296-325 3-33 (79)
242 KOG2541|consensus 70.6 14 0.0003 31.3 5.7 35 34-68 92-127 (296)
243 TIGR03131 malonate_mdcH malona 70.6 5.9 0.00013 34.3 3.9 32 24-55 66-97 (295)
244 PF14235 DUF4337: Domain of un 70.5 14 0.00029 28.8 5.4 20 291-310 115-134 (157)
245 PF11346 DUF3149: Protein of u 69.4 12 0.00027 21.6 3.7 9 300-308 11-19 (42)
246 PLN02213 sinapoylglucose-malat 69.1 16 0.00034 32.2 6.3 39 33-71 50-98 (319)
247 TIGR01260 ATP_synt_c ATP synth 68.5 9.5 0.00021 24.0 3.4 30 290-319 28-57 (58)
248 TIGR00128 fabD malonyl CoA-acy 68.4 6.4 0.00014 33.9 3.7 30 26-55 74-104 (290)
249 TIGR01495 ETRAMP Plasmodium ri 67.7 4.5 9.7E-05 27.7 2.0 13 314-326 64-76 (85)
250 cd07225 Pat_PNPLA6_PNPLA7 Pata 67.6 8.5 0.00018 33.6 4.2 34 23-56 32-65 (306)
251 KOG2029|consensus 67.5 11 0.00024 35.6 5.0 35 34-68 526-571 (697)
252 PF02439 Adeno_E3_CR2: Adenovi 66.9 15 0.00032 20.7 3.5 20 297-316 5-25 (38)
253 PF09949 DUF2183: Uncharacteri 66.8 21 0.00046 25.3 5.4 44 21-64 52-97 (100)
254 PF13106 DUF3961: Domain of un 66.5 6.6 0.00014 22.3 2.1 16 301-316 21-36 (40)
255 PF11712 Vma12: Endoplasmic re 66.5 38 0.00083 25.7 7.2 20 262-281 23-42 (142)
256 PRK10279 hypothetical protein; 66.3 8.9 0.00019 33.4 4.1 34 24-57 23-56 (300)
257 TIGR02736 cbb3_Q_epsi cytochro 66.0 7.6 0.00016 23.8 2.5 19 311-329 6-24 (56)
258 PF10883 DUF2681: Protein of u 65.8 7.4 0.00016 26.7 2.7 23 302-324 1-23 (87)
259 cd07198 Patatin Patatin-like p 65.8 10 0.00022 29.8 4.1 32 25-56 17-48 (172)
260 PF07519 Tannase: Tannase and 65.8 17 0.00036 34.0 6.0 51 19-69 97-150 (474)
261 PF12459 DUF3687: D-Ala-teicho 64.8 14 0.0003 21.4 3.3 19 310-328 13-31 (42)
262 PF11119 DUF2633: Protein of u 64.6 9.7 0.00021 23.8 2.8 19 296-314 9-27 (59)
263 PF06024 DUF912: Nucleopolyhed 62.9 5 0.00011 28.5 1.6 23 306-329 66-88 (101)
264 PHA00024 IX minor coat protein 62.7 9 0.00019 20.7 2.1 26 309-334 2-27 (33)
265 MTH00222 ATP9 ATP synthase F0 62.4 13 0.00029 24.8 3.4 32 290-321 46-77 (77)
266 COG1752 RssA Predicted esteras 62.2 11 0.00024 32.8 4.0 34 23-56 28-61 (306)
267 PRK00523 hypothetical protein; 61.8 15 0.00032 24.1 3.4 21 304-325 5-25 (72)
268 cd07210 Pat_hypo_W_succinogene 61.1 15 0.00033 30.3 4.4 31 26-56 20-50 (221)
269 cd07207 Pat_ExoU_VipD_like Exo 61.0 14 0.0003 29.6 4.2 31 26-56 19-49 (194)
270 PF12438 DUF3679: Protein of u 60.6 9.5 0.00021 23.6 2.3 16 307-322 3-18 (56)
271 cd07227 Pat_Fungal_NTE1 Fungal 60.2 14 0.0003 31.6 4.1 32 24-55 28-59 (269)
272 TIGR02816 pfaB_fam PfaB family 59.8 11 0.00024 35.6 3.8 32 24-55 254-286 (538)
273 PRK13471 F0F1 ATP synthase sub 58.1 18 0.00039 24.8 3.5 32 290-321 54-85 (85)
274 PLN02209 serine carboxypeptida 57.6 21 0.00045 33.0 5.0 50 21-70 147-213 (437)
275 PLN03016 sinapoylglucose-malat 56.1 23 0.0005 32.7 5.1 51 19-69 147-210 (433)
276 cd07228 Pat_NTE_like_bacteria 55.9 21 0.00045 28.1 4.3 31 26-56 20-50 (175)
277 cd07209 Pat_hypo_Ecoli_Z1214_l 54.9 20 0.00043 29.4 4.1 33 24-56 16-48 (215)
278 PF07438 DUF1514: Protein of u 54.3 18 0.00039 23.0 2.8 15 320-334 29-43 (66)
279 PRK10332 hypothetical protein; 53.3 21 0.00045 25.6 3.3 33 299-333 10-42 (107)
280 PTZ00359 hypothetical protein; 53.2 8 0.00017 34.5 1.5 28 303-334 77-104 (443)
281 KOG4372|consensus 53.2 5.4 0.00012 35.7 0.5 36 19-54 135-170 (405)
282 cd07230 Pat_TGL4-5_like Triacy 52.6 12 0.00027 34.3 2.7 34 28-61 95-128 (421)
283 PF13073 DUF3937: Protein of u 52.1 22 0.00048 22.4 2.9 20 311-330 15-34 (73)
284 PF10605 3HBOH: 3HB-oligomer h 51.4 37 0.00081 32.4 5.5 37 36-72 287-324 (690)
285 PF05576 Peptidase_S37: PS-10 50.8 55 0.0012 29.8 6.3 43 178-224 351-393 (448)
286 COG3887 Predicted signaling pr 50.3 37 0.0008 32.3 5.3 49 17-68 323-377 (655)
287 KOG1283|consensus 50.2 19 0.00042 31.3 3.3 59 16-74 97-171 (414)
288 PF00137 ATP-synt_C: ATP synth 50.1 36 0.00077 21.9 3.9 28 292-319 38-65 (66)
289 PF10791 F1F0-ATPsyn_F: Mitoch 50.1 15 0.00033 25.3 2.2 20 309-328 72-91 (95)
290 PF07811 TadE: TadE-like prote 50.1 47 0.001 18.9 4.2 16 300-315 2-17 (43)
291 KOG1516|consensus 48.7 45 0.00097 31.8 6.0 52 18-69 174-232 (545)
292 cd01714 ETF_beta The electron 48.7 30 0.00064 28.1 4.1 51 14-65 90-145 (202)
293 PF13677 MotB_plug: Membrane M 48.4 20 0.00044 22.4 2.4 12 311-322 28-39 (58)
294 cd02437 CCC1_like_1 CCC1-relat 48.4 48 0.001 26.2 5.2 19 310-328 127-145 (175)
295 cd07205 Pat_PNPLA6_PNPLA7_NTE1 48.0 34 0.00075 26.8 4.4 30 26-55 20-49 (175)
296 cd07212 Pat_PNPLA9 Patatin-lik 47.9 34 0.00074 30.0 4.7 33 23-55 17-53 (312)
297 cd07232 Pat_PLPL Patain-like p 47.9 16 0.00035 33.3 2.7 40 23-63 85-124 (407)
298 PRK02919 oxaloacetate decarbox 47.8 42 0.0009 22.8 4.0 17 296-312 9-25 (82)
299 cd07229 Pat_TGL3_like Triacylg 47.3 18 0.00039 32.7 2.8 38 26-63 103-140 (391)
300 PF13120 DUF3974: Domain of un 47.3 8.4 0.00018 26.5 0.6 16 315-330 24-39 (126)
301 PF04156 IncA: IncA protein; 46.8 42 0.0009 26.9 4.7 27 303-329 37-63 (191)
302 COG4709 Predicted membrane pro 46.7 54 0.0012 26.1 5.0 32 281-312 69-100 (195)
303 cd07231 Pat_SDP1-like Sugar-De 46.5 18 0.0004 31.6 2.7 33 29-61 91-123 (323)
304 TIGR02230 ATPase_gene1 F0F1-AT 46.2 66 0.0014 22.8 4.9 18 292-309 42-59 (100)
305 COG4499 Predicted membrane pro 46.1 36 0.00078 30.4 4.3 33 275-307 200-232 (434)
306 KOG2521|consensus 45.9 1.1E+02 0.0023 27.4 7.3 66 178-243 225-293 (350)
307 COG2939 Carboxypeptidase C (ca 45.6 31 0.00067 32.1 4.1 36 34-69 198-236 (498)
308 PF00737 PsbH: Photosystem II 45.4 28 0.00061 21.1 2.5 20 305-324 28-47 (52)
309 cd07208 Pat_hypo_Ecoli_yjju_li 45.3 37 0.0008 28.9 4.4 34 25-58 17-51 (266)
310 KOG0860|consensus 44.8 35 0.00075 24.8 3.4 23 303-325 92-114 (116)
311 PLN00126 succinate dehydrogena 44.5 23 0.0005 25.4 2.4 32 290-321 98-129 (129)
312 PF10081 Abhydrolase_9: Alpha/ 44.2 39 0.00086 28.9 4.2 52 19-70 91-148 (289)
313 PRK07558 F0F1 ATP synthase sub 43.5 41 0.00088 22.4 3.4 30 290-319 44-73 (74)
314 PF08135 EPV_E5: Major transfo 43.1 61 0.0013 18.5 3.4 17 301-317 14-30 (44)
315 TIGR01195 oadG_fam sodium pump 42.2 74 0.0016 21.6 4.6 17 296-312 6-22 (82)
316 PF14283 DUF4366: Domain of un 41.1 8.6 0.00019 31.6 -0.1 11 320-330 175-185 (218)
317 PRK13464 F0F1 ATP synthase sub 41.1 51 0.0011 23.3 3.7 34 290-323 53-86 (101)
318 PF03283 PAE: Pectinacetyleste 40.5 1.9E+02 0.0042 26.0 8.3 48 23-70 143-196 (361)
319 PRK06876 F0F1 ATP synthase sub 40.1 49 0.0011 22.2 3.4 31 290-320 46-76 (78)
320 PF14715 FixP_N: N-terminal do 38.4 37 0.0008 20.7 2.4 15 314-328 29-43 (51)
321 PF07790 DUF1628: Protein of u 37.7 51 0.0011 22.0 3.3 17 297-313 6-23 (80)
322 cd07224 Pat_like Patatin-like 37.4 57 0.0012 27.2 4.3 31 26-56 19-51 (233)
323 PRK15356 type III secretion sy 36.5 24 0.00053 23.2 1.4 12 311-322 31-42 (75)
324 PF05399 EVI2A: Ectropic viral 36.2 77 0.0017 25.7 4.4 31 300-330 131-163 (227)
325 cd07206 Pat_TGL3-4-5_SDP1 Tria 36.2 58 0.0013 28.3 4.2 30 30-59 93-122 (298)
326 TIGR00847 ccoS cytochrome oxid 35.5 71 0.0015 19.5 3.2 20 311-330 9-28 (51)
327 COG0109 CyoE Polyprenyltransfe 35.5 82 0.0018 27.4 4.9 28 297-324 105-135 (304)
328 TIGR03647 Na_symport_sm probab 35.4 55 0.0012 21.9 3.0 20 307-326 10-29 (77)
329 PF02167 Cytochrom_C1: Cytochr 35.3 1.1E+02 0.0023 25.3 5.4 19 224-242 166-184 (219)
330 COG2991 Uncharacterized protei 34.7 37 0.0008 22.2 2.0 20 307-326 4-25 (77)
331 PRK04598 tatA twin arginine tr 33.2 21 0.00046 24.1 0.8 17 304-320 5-21 (81)
332 cd07204 Pat_PNPLA_like Patatin 33.1 74 0.0016 26.7 4.3 20 37-56 34-53 (243)
333 PRK08482 F0F1 ATP synthase sub 33.0 73 0.0016 22.8 3.5 33 290-322 70-102 (105)
334 PF05879 RHD3: Root hair defec 32.9 1.3E+02 0.0028 30.1 6.5 33 295-327 651-689 (742)
335 COG2939 Carboxypeptidase C (ca 32.9 74 0.0016 29.7 4.4 61 178-239 425-490 (498)
336 TIGR02498 type_III_ssaH type I 32.8 29 0.00063 23.2 1.4 13 311-323 43-55 (79)
337 PRK03814 oxaloacetate decarbox 32.6 1E+02 0.0022 21.1 4.1 15 296-310 10-24 (85)
338 PRK13468 F0F1 ATP synthase sub 32.3 75 0.0016 21.6 3.3 32 290-321 47-78 (82)
339 PF07158 MatC_N: Dicarboxylate 32.2 1.1E+02 0.0025 23.4 4.7 34 297-330 24-72 (149)
340 PF14575 EphA2_TM: Ephrin type 31.7 35 0.00076 22.7 1.7 17 298-314 3-19 (75)
341 PF14253 AbiH: Bacteriophage a 31.6 48 0.001 28.1 3.0 16 32-47 233-248 (270)
342 TIGR03322 alt_F1F0_F0_C altern 31.5 96 0.0021 21.3 3.8 33 290-322 48-80 (86)
343 PRK13275 mtrF tetrahydromethan 31.3 81 0.0018 20.4 3.2 13 304-316 53-65 (67)
344 PRK02624 psbH photosystem II r 31.1 53 0.0012 20.7 2.2 23 305-327 31-53 (64)
345 TIGR03493 cellullose_BcsF cell 30.9 71 0.0015 20.2 2.7 12 315-326 14-25 (62)
346 CHL00186 psaI photosystem I su 30.9 96 0.0021 17.3 3.0 23 307-329 9-31 (36)
347 PF11120 DUF2636: Protein of u 30.7 71 0.0015 20.3 2.8 12 315-326 14-25 (62)
348 PF15566 Imm18: Immunity prote 30.6 58 0.0013 19.9 2.3 30 18-47 5-34 (52)
349 PLN00055 photosystem II reacti 30.6 54 0.0012 21.5 2.3 24 305-328 43-66 (73)
350 PF07332 DUF1469: Protein of u 30.6 1.2E+02 0.0025 22.1 4.5 27 299-325 37-63 (121)
351 PF09994 DUF2235: Uncharacteri 30.3 97 0.0021 26.6 4.6 32 23-54 80-112 (277)
352 PF14914 LRRC37AB_C: LRRC37A/B 30.2 50 0.0011 25.1 2.4 13 300-312 122-134 (154)
353 cd07222 Pat_PNPLA4 Patatin-lik 30.1 59 0.0013 27.3 3.2 23 36-59 33-55 (246)
354 PRK03554 tatA twin arginine tr 30.0 44 0.00096 22.9 1.9 17 304-320 5-21 (89)
355 cd01819 Patatin_and_cPLA2 Pata 29.9 96 0.0021 23.8 4.2 25 28-52 20-46 (155)
356 TIGR03052 PS_I_psaI photosyste 29.6 50 0.0011 17.7 1.7 20 309-328 8-27 (31)
357 PRK04561 tatA twin arginine tr 29.5 25 0.00055 23.2 0.7 17 304-320 5-21 (75)
358 COG4064 MtrG Tetrahydromethano 29.5 1.2E+02 0.0026 19.7 3.6 23 300-322 50-72 (75)
359 CHL00066 psbH photosystem II p 29.3 57 0.0012 21.3 2.2 23 305-327 43-65 (73)
360 PF03597 CcoS: Cytochrome oxid 29.0 76 0.0016 18.7 2.6 16 314-329 11-26 (45)
361 KOG4473|consensus 28.8 66 0.0014 26.3 3.0 11 324-334 208-218 (247)
362 COG4667 Predicted esterase of 28.7 68 0.0015 27.3 3.2 43 21-64 27-70 (292)
363 PF08006 DUF1700: Protein of u 28.6 1.9E+02 0.0041 22.9 5.8 12 297-308 85-96 (181)
364 PF09446 VMA21: VMA21-like dom 28.4 1.1E+02 0.0024 19.7 3.5 21 301-321 10-30 (66)
365 PF11085 YqhR: Conserved membr 28.3 84 0.0018 24.7 3.4 27 278-304 4-30 (173)
366 COG0331 FabD (acyl-carrier-pro 28.3 80 0.0017 27.7 3.8 22 32-53 83-104 (310)
367 cd07218 Pat_iPLA2 Calcium-inde 28.0 1E+02 0.0022 26.0 4.3 34 23-56 18-52 (245)
368 PRK07354 F0F1 ATP synthase sub 28.0 1.1E+02 0.0023 20.8 3.6 31 290-320 47-77 (81)
369 PRK09459 pspG phage shock prot 27.8 1.2E+02 0.0027 20.0 3.6 8 299-306 18-25 (76)
370 PF14991 MLANA: Protein melan- 27.5 14 0.0003 26.5 -0.8 20 294-313 25-44 (118)
371 cd07221 Pat_PNPLA3 Patatin-lik 27.1 1.1E+02 0.0024 25.9 4.3 33 23-56 18-54 (252)
372 PF09605 Trep_Strep: Hypotheti 27.0 98 0.0021 24.8 3.8 9 326-334 178-186 (186)
373 PF12242 Eno-Rase_NADH_b: NAD( 26.9 98 0.0021 20.7 3.1 25 32-56 38-62 (78)
374 PRK13469 F0F1 ATP synthase sub 26.9 1E+02 0.0022 20.8 3.3 31 290-320 48-78 (79)
375 PRK02958 tatA twin arginine tr 26.5 55 0.0012 21.7 1.9 18 303-320 4-21 (73)
376 PHA00724 hypothetical protein 26.5 1.2E+02 0.0026 19.6 3.3 17 315-331 65-81 (83)
377 cd07220 Pat_PNPLA2 Patatin-lik 25.9 1.1E+02 0.0024 25.8 4.1 33 23-56 22-58 (249)
378 KOG2442|consensus 25.6 16 0.00034 33.6 -1.0 31 178-215 147-177 (541)
379 PF09716 ETRAMP: Malarial earl 25.6 1.1E+02 0.0023 20.9 3.3 13 314-326 68-80 (84)
380 PF10731 Anophelin: Thrombin i 25.4 50 0.0011 20.6 1.4 18 303-320 2-19 (65)
381 TIGR02813 omega_3_PfaA polyket 25.4 70 0.0015 36.8 3.5 31 24-54 664-694 (2582)
382 PF09788 Tmemb_55A: Transmembr 25.3 68 0.0015 26.9 2.6 26 290-315 196-221 (256)
383 PF06287 DUF1039: Protein of u 25.2 51 0.0011 21.3 1.5 13 311-323 30-42 (66)
384 PF13055 DUF3917: Protein of u 24.9 28 0.00061 21.5 0.3 21 291-311 38-60 (71)
385 PRK12873 ubiA prenyltransferas 24.8 2.2E+02 0.0047 24.8 5.7 19 312-330 118-138 (294)
386 COG3673 Uncharacterized conser 24.8 1.3E+02 0.0029 26.4 4.3 42 22-67 109-151 (423)
387 PF02532 PsbI: Photosystem II 24.6 1.4E+02 0.0029 16.6 2.8 14 310-323 10-23 (36)
388 PF02238 COX7a: Cytochrome c o 24.6 1.9E+02 0.004 18.1 4.1 22 301-322 28-49 (56)
389 TIGR02507 MtrF tetrahydrometha 24.6 88 0.0019 20.1 2.4 11 306-316 55-65 (65)
390 CHL00061 atpH ATP synthase CF0 24.6 1.2E+02 0.0027 20.5 3.3 33 290-322 47-79 (81)
391 COG3763 Uncharacterized protei 24.4 1.4E+02 0.003 19.5 3.3 12 315-326 14-25 (71)
392 PF11239 DUF3040: Protein of u 24.1 2.3E+02 0.005 19.0 5.2 12 313-324 70-81 (82)
393 PLN02752 [acyl-carrier protein 24.1 81 0.0018 28.0 3.2 30 26-55 110-145 (343)
394 COG0798 ACR3 Arsenite efflux p 24.1 1.2E+02 0.0026 26.8 4.0 24 305-328 247-270 (342)
395 PF04999 FtsL: Cell division p 23.9 1.6E+02 0.0035 20.4 4.1 15 313-327 20-34 (97)
396 COG3601 Predicted membrane pro 23.9 1.1E+02 0.0023 24.3 3.3 27 292-318 102-130 (186)
397 PF11713 Peptidase_C80: Peptid 23.8 72 0.0016 24.8 2.4 33 14-46 76-116 (157)
398 KOG4631|consensus 23.7 74 0.0016 21.8 2.1 18 312-329 73-90 (100)
399 TIGR02185 Trep_Strep conserved 23.5 1.3E+02 0.0027 24.3 3.8 29 303-334 161-189 (189)
400 PF07667 DUF1600: Protein of u 23.5 86 0.0019 22.8 2.6 19 310-328 87-105 (114)
401 cd03379 beta_CA_cladeD Carboni 23.3 1.2E+02 0.0025 23.1 3.5 28 19-46 41-68 (142)
402 KOG3145|consensus 23.2 1.7E+02 0.0036 25.4 4.5 33 298-330 234-272 (372)
403 PF11100 TrbE: Conjugal transf 23.1 1.3E+02 0.0029 19.0 3.0 8 300-307 35-42 (66)
404 COG1862 YajC Preprotein transl 22.9 85 0.0018 22.1 2.4 8 314-321 14-21 (97)
405 TIGR00739 yajC preprotein tran 22.8 72 0.0016 21.7 2.0 13 314-326 8-20 (84)
406 PF09472 MtrF: Tetrahydrometha 22.7 90 0.0019 20.1 2.2 10 305-314 54-63 (64)
407 PF15378 DUF4605: Domain of un 22.6 1.1E+02 0.0024 19.3 2.6 23 300-322 24-46 (60)
408 PF15168 TRIQK: Triple QxxK/R 22.3 1.8E+02 0.0039 19.3 3.5 6 323-328 66-71 (79)
409 cd02431 Ferritin_CCC1_C CCC1-r 22.3 2.7E+02 0.0058 21.4 5.2 16 314-329 105-120 (149)
410 KOG4142|consensus 22.2 1.4E+02 0.0031 23.1 3.6 43 290-332 92-137 (208)
411 PRK07159 F0F1 ATP synthase sub 22.1 1.4E+02 0.0031 21.1 3.4 30 290-319 69-98 (100)
412 TIGR02975 phageshock_pspG phag 22.1 2E+02 0.0043 18.4 3.6 9 299-307 17-25 (64)
413 TIGR02069 cyanophycinase cyano 21.7 2.8E+02 0.0061 23.4 5.8 54 182-241 2-56 (250)
414 KOG1688|consensus 21.6 64 0.0014 25.2 1.7 12 311-322 148-159 (188)
415 PF11812 DUF3333: Domain of un 21.4 1.6E+02 0.0035 22.8 3.8 29 294-323 14-42 (155)
416 cd00382 beta_CA Carbonic anhyd 21.2 1.1E+02 0.0023 22.4 2.8 30 19-48 44-73 (119)
417 PRK00442 tatA twin arginine tr 21.2 56 0.0012 22.7 1.2 17 304-320 5-21 (92)
418 COG0636 AtpE F0F1-type ATP syn 21.2 1.5E+02 0.0033 19.9 3.3 31 291-321 48-78 (79)
419 PF04246 RseC_MucC: Positive r 21.1 1.9E+02 0.0041 21.6 4.2 20 300-319 68-87 (135)
420 COG1325 Predicted exosome subu 21.0 2.6E+02 0.0057 21.4 4.7 59 181-241 13-79 (149)
421 COG0813 DeoD Purine-nucleoside 21.0 3.3E+02 0.0072 22.5 5.6 59 9-69 22-93 (236)
422 PF14610 DUF4448: Protein of u 20.7 26 0.00055 28.2 -0.6 26 301-326 156-181 (189)
423 PF07380 Pneumo_M2: Pneumoviru 20.5 2E+02 0.0044 19.2 3.5 22 13-34 58-79 (89)
424 COG0838 NuoA NADH:ubiquinone o 20.5 1.5E+02 0.0033 21.9 3.4 14 316-329 102-115 (123)
425 PRK14401 membrane protein; Pro 20.4 2.3E+02 0.0051 22.7 4.6 34 297-331 103-137 (187)
426 PF05102 Holin_BlyA: holin, Bl 20.1 1.5E+02 0.0032 18.8 2.8 22 293-314 11-32 (61)
427 PF09656 PGPGW: Putative trans 20.0 2.3E+02 0.005 17.4 4.3 21 311-331 26-46 (53)
428 TIGR03607 patatin-related prot 20.0 1.3E+02 0.0027 30.0 3.7 22 32-53 64-85 (739)
429 PF07662 Nucleos_tra2_C: Na+ d 20.0 2.7E+02 0.0058 22.9 5.0 12 308-319 71-82 (210)
No 1
>KOG4409|consensus
Probab=99.98 E-value=1.7e-31 Score=222.98 Aligned_cols=237 Identities=49% Similarity=0.949 Sum_probs=209.6
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC-CCccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS-IDPQK 79 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~-~~~~~ 79 (335)
+|+|++|..+.+.......+++-+++.....|+++.+||||||||.++..||.+||++|+.|||++|++++..+ .....
T Consensus 127 ~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~ 206 (365)
T KOG4409|consen 127 FGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEF 206 (365)
T ss_pred CCCCCCCCCCCCcccchHHHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhh
Confidence 69999998776666666799999999999999999999999999999999999999999999999999998877 55556
Q ss_pred ccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhh
Q psy17711 80 ASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTE 159 (335)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
....+.|...+.......+|...+|..+++.+.+..+...+....+.....++- +.+|++.+....+.+...+..+..
T Consensus 207 ~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~--l~~YiY~~n~~~psgE~~fk~l~~ 284 (365)
T KOG4409|consen 207 TKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDF--LHEYIYHCNAQNPSGETAFKNLFE 284 (365)
T ss_pred cCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHH--HHHHHHHhcCCCCcHHHHHHHHHh
Confidence 666677887788888899999999999999999999988888888777655555 799999999999999999999999
Q ss_pred ccCCccchhhhhhhhhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 160 GLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 160 ~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
...|..+++.+++..+..+||+++|+|++|+++.....++.+.+.. ..++.++++++||+++.++|+.|++.+.++++.
T Consensus 285 ~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD~~~g~~~~~~~~~-~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 285 PGGWARRPMIQRLRELKKDVPVTFIYGDRDWMDKNAGLEVTKSLMK-EYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDK 363 (365)
T ss_pred ccchhhhhHHHHHHhhccCCCEEEEecCcccccchhHHHHHHHhhc-ccceEEEecCCCceeecCCHHHHHHHHHHHHhc
Confidence 9999999999999998556999999999999966666777765555 458999999999999999999999999999875
Q ss_pred c
Q psy17711 240 S 240 (335)
Q Consensus 240 ~ 240 (335)
.
T Consensus 364 ~ 364 (365)
T KOG4409|consen 364 V 364 (365)
T ss_pred c
Confidence 3
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.90 E-value=6.3e-23 Score=178.43 Aligned_cols=223 Identities=11% Similarity=0.121 Sum_probs=127.4
Q ss_pred CCCCCCCCCC---CChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCc
Q psy17711 1 FGRSSRPRFS---TDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDP 77 (335)
Q Consensus 1 hG~S~~~~~~---~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~ 77 (335)
||.|+.+... .+..++++++++|+.+++++++.++++|+||||||.+++.+|.++|++|+++|++++..........
T Consensus 66 ~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~ 145 (294)
T PLN02824 66 YGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQ 145 (294)
T ss_pred CCCCCCCccccccccccCCHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCccccccccc
Confidence 7899875421 1235788999999999999999999999999999999999999999999999999986432211110
Q ss_pred ccccchHHHHHHhhhhcccCCCCCcccccCC-chhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHH
Q psy17711 78 QKASKIPLWARMIGNLYKNFNPLWPVRFVGP-LGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHT 156 (335)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (335)
. . ........+....... ......... ......... +...+...-.........+.... ..+.....+..
T Consensus 146 ~-~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 216 (294)
T PLN02824 146 P-W-LGRPFIKAFQNLLRET--AVGKAFFKSVATPETVKNI---LCQCYHDDSAVTDELVEAILRPG--LEPGAVDVFLD 216 (294)
T ss_pred c-h-hhhHHHHHHHHHHhch--hHHHHHHHhhcCHHHHHHH---HHHhccChhhccHHHHHHHHhcc--CCchHHHHHHH
Confidence 0 0 0000001111110000 000000000 000000000 00000000000011111111100 11111111111
Q ss_pred hhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHH
Q psy17711 157 LTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235 (335)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~ 235 (335)
+.... ........++.+ ++|+|+|+|++|.+ +.+..+.+.+..++ .++++++++||++++|+|+++++.|.+
T Consensus 217 ~~~~~--~~~~~~~~l~~i--~~P~lvi~G~~D~~~~~~~~~~~~~~~~~---~~~~~i~~~gH~~~~e~p~~~~~~i~~ 289 (294)
T PLN02824 217 FISYS--GGPLPEELLPAV--KCPVLIAWGEKDPWEPVELGRAYANFDAV---EDFIVLPGVGHCPQDEAPELVNPLIES 289 (294)
T ss_pred Hhccc--cccchHHHHhhc--CCCeEEEEecCCCCCChHHHHHHHhcCCc---cceEEeCCCCCChhhhCHHHHHHHHHH
Confidence 11110 011112334555 99999999999998 88888888888777 899999999999999999999999999
Q ss_pred Hhhh
Q psy17711 236 TCTL 239 (335)
Q Consensus 236 fl~~ 239 (335)
|+++
T Consensus 290 fl~~ 293 (294)
T PLN02824 290 FVAR 293 (294)
T ss_pred HHhc
Confidence 9975
No 3
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.90 E-value=3.3e-22 Score=172.31 Aligned_cols=208 Identities=19% Similarity=0.260 Sum_probs=127.4
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+.. .++++++++|+.++++++++++++||||||||.+++.+|.++|++|+++|+++++.........
T Consensus 62 ~G~S~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~--- 134 (276)
T TIGR02240 62 VGGSSTPRH----PYRFPGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGK--- 134 (276)
T ss_pred CCCCCCCCC----cCcHHHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCc---
Confidence 799986542 3567899999999999999999999999999999999999999999999999986542211100
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
..................... . ....+......+......+..... .. ............
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 194 (276)
T TIGR02240 135 ---PKVLMMMASPRRYIQPSHGIH----I-----------APDIYGGAFRRDPELAMAHASKVR-SG-GKLGYYWQLFAG 194 (276)
T ss_pred ---hhHHHHhcCchhhhccccccc----h-----------hhhhccceeeccchhhhhhhhhcc-cC-CCchHHHHHHHH
Confidence 000000000000000000000 0 000000000001100111111110 00 000111111111
Q ss_pred cCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 161 LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 161 ~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
..+. ....+..+ +||+|+|+|++|.+ +++..+.+.+.+++ .+++++++ ||+++.|+|+++++.|.+|+++
T Consensus 195 ~~~~---~~~~l~~i--~~P~lii~G~~D~~v~~~~~~~l~~~~~~---~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~ 265 (276)
T TIGR02240 195 LGWT---SIHWLHKI--QQPTLVLAGDDDPIIPLINMRLLAWRIPN---AELHIIDD-GHLFLITRAEAVAPIIMKFLAE 265 (276)
T ss_pred cCCc---hhhHhhcC--CCCEEEEEeCCCCcCCHHHHHHHHHhCCC---CEEEEEcC-CCchhhccHHHHHHHHHHHHHH
Confidence 1111 12334445 99999999999998 88999999999998 88999985 9999999999999999999998
Q ss_pred chhhh
Q psy17711 240 SDEKL 244 (335)
Q Consensus 240 ~~~~~ 244 (335)
..++.
T Consensus 266 ~~~~~ 270 (276)
T TIGR02240 266 ERQRA 270 (276)
T ss_pred hhhhc
Confidence 76653
No 4
>PLN02965 Probable pheophorbidase
Probab=99.89 E-value=5.4e-22 Score=168.90 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=122.9
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCC-CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQK 79 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~-~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~ 79 (335)
||.|+.+.. ..++++++++|+.++++.++. ++++++||||||.+++.+|.++|++|+++|++++.........
T Consensus 41 ~G~S~~~~~---~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~--- 114 (255)
T PLN02965 41 AGISLTDSN---TVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSII--- 114 (255)
T ss_pred CCCCCCCcc---ccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCc---
Confidence 788876542 245679999999999999987 5999999999999999999999999999999998543211100
Q ss_pred ccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcc-cccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhh
Q psy17711 80 ASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLP-KKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLT 158 (335)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (335)
......+................ ........ ...... ..+ +.........+..... .+.....+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~- 182 (255)
T PLN02965 115 SPRLKNVMEGTEKIWDYTFGEGP---DKPPTGIM---MKPEFVRHYY---YNQSPLEDYTLSSKLL--RPAPVRAFQDL- 182 (255)
T ss_pred cHHHHhhhhccccceeeeeccCC---CCCcchhh---cCHHHHHHHH---hcCCCHHHHHHHHHhc--CCCCCcchhhh-
Confidence 00000000000000000000000 00000000 000000 000 0000000000000000 00000000000
Q ss_pred hccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHh
Q psy17711 159 EGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTC 237 (335)
Q Consensus 159 ~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl 237 (335)
......+..+ ++|+++++|++|.+ ++...+.+.+.+++ +++++++++||++++|+|++|++.|.+|+
T Consensus 183 -------~~~~~~~~~i--~vP~lvi~g~~D~~~~~~~~~~~~~~~~~---a~~~~i~~~GH~~~~e~p~~v~~~l~~~~ 250 (255)
T PLN02965 183 -------DKLPPNPEAE--KVPRVYIKTAKDNLFDPVRQDVMVENWPP---AQTYVLEDSDHSAFFSVPTTLFQYLLQAV 250 (255)
T ss_pred -------hhccchhhcC--CCCEEEEEcCCCCCCCHHHHHHHHHhCCc---ceEEEecCCCCchhhcCHHHHHHHHHHHH
Confidence 0001122233 99999999999999 99999999999999 89999999999999999999999999998
Q ss_pred hhch
Q psy17711 238 TLSD 241 (335)
Q Consensus 238 ~~~~ 241 (335)
+.+.
T Consensus 251 ~~~~ 254 (255)
T PLN02965 251 SSLQ 254 (255)
T ss_pred HHhc
Confidence 8763
No 5
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.89 E-value=1.2e-21 Score=170.41 Aligned_cols=216 Identities=15% Similarity=0.216 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||+|+.+.. .++++++++|+.+++++++.++++++||||||.+|+.+|.++|++|+++|++++...+...... .
T Consensus 64 ~G~S~~~~~----~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~--~ 137 (295)
T PRK03592 64 MGASDKPDI----DYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDF--P 137 (295)
T ss_pred CCCCCCCCC----CCCHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhc--c
Confidence 799987753 3567899999999999999999999999999999999999999999999999984432111100 0
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
.....+...+... ........ .. ...... .+...+...+.++. ...+..... .+............
T Consensus 138 ~~~~~~~~~~~~~--~~~~~~~~----~~-~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~ 203 (295)
T PRK03592 138 PAVRELFQALRSP--GEGEEMVL----EE-NVFIER---VLPGSILRPLSDEE--MAVYRRPFP--TPESRRPTLSWPRE 203 (295)
T ss_pred hhHHHHHHHHhCc--cccccccc----ch-hhHHhh---cccCcccccCCHHH--HHHHHhhcC--Cchhhhhhhhhhhh
Confidence 0011111111100 00000000 00 000000 00011111111111 121211110 01110000000000
Q ss_pred cCC-----c----cchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHH-HHHhcCCCceEEEEeCCCCccccccChHHH
Q psy17711 161 LGY-----A----KRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKI-KEARSQNSFVQVKSVTGAGHHVYADRADVF 229 (335)
Q Consensus 161 ~~~-----~----~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l-~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~ 229 (335)
... . ..+....+..+ +||+|+|+|++|.+ ++.....+ .+..++ .++++++++||+++.|+|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~i--~~P~lii~G~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~gH~~~~e~p~~v 278 (295)
T PRK03592 204 LPIDGEPADVVALVEEYAQWLATS--DVPKLLINAEPGAILTTGAIRDWCRSWPNQ---LEITVFGAGLHFAQEDSPEEI 278 (295)
T ss_pred cCCCCcchhhHhhhhHhHHHhccC--CCCeEEEeccCCcccCcHHHHHHHHHhhhh---cceeeccCcchhhhhcCHHHH
Confidence 000 0 00111223444 99999999999988 56555454 455677 899999999999999999999
Q ss_pred HHHHHHHhhhch
Q psy17711 230 NKMVNDTCTLSD 241 (335)
Q Consensus 230 ~~~I~~fl~~~~ 241 (335)
++.|.+|+++..
T Consensus 279 ~~~i~~fl~~~~ 290 (295)
T PRK03592 279 GAAIAAWLRRLR 290 (295)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 6
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.89 E-value=4.1e-22 Score=180.48 Aligned_cols=221 Identities=20% Similarity=0.253 Sum_probs=125.4
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHH-HHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIE-EWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQK 79 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~-~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~ 79 (335)
||+|+.+.. ..++++++++++. .++++++.++++++||||||.+++.+|.++|++|+++|+++++..........
T Consensus 243 ~G~S~~p~~---~~ytl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~- 318 (481)
T PLN03087 243 FGRSPKPAD---SLYTLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQA- 318 (481)
T ss_pred CCCCcCCCC---CcCCHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhH-
Confidence 789987642 2467799999994 89999999999999999999999999999999999999999865432221100
Q ss_pred ccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCc----------ccccCCCCccchhHHHHHHHHhhhcC--
Q psy17711 80 ASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDL----------PKKFTPVLKEDSSAITEYIFQCNVQA-- 147 (335)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-- 147 (335)
......... ......+....... ..+........ ...+...+.... ...+........
T Consensus 319 ---~~~~~~~~~-~~~~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~~~~~~~ 388 (481)
T PLN03087 319 ---TQYVMRKVA-PRRVWPPIAFGASV----ACWYEHISRTICLVICKNHRLWEFLTRLLTRNR--MRTFLIEGFFCHTH 388 (481)
T ss_pred ---HHHHHHHhc-ccccCCccccchhH----HHHHHHHHhhhhcccccchHHHHHHHHHhhhhh--hhHHHHHHHHhccc
Confidence 000000000 00000000000000 00000000000 000000000000 111111000000
Q ss_pred CChHHHHHHhhhccCCccchhhhh-hhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccc-c
Q psy17711 148 PSGESAFHTLTEGLGYAKRPMLHR-VDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYA-D 224 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~-e 224 (335)
......+..+.........+.+.. ...+ ++|+|+|+|++|.+ |++..+.+.+.+|+ +++++++++||++++ |
T Consensus 389 ~~~~~~l~~~i~~~~~~l~~~l~~l~~~I--~vPtLII~Ge~D~ivP~~~~~~la~~iP~---a~l~vI~~aGH~~~v~e 463 (481)
T PLN03087 389 NAAWHTLHNIICGSGSKLDGYLDHVRDQL--KCDVAIFHGGDDELIPVECSYAVKAKVPR---ARVKVIDDKDHITIVVG 463 (481)
T ss_pred hhhHHHHHHHHhchhhhhhhHHHHHHHhC--CCCEEEEEECCCCCCCHHHHHHHHHhCCC---CEEEEeCCCCCcchhhc
Confidence 000011111111100000111111 1234 99999999999998 99999999999999 999999999999996 9
Q ss_pred ChHHHHHHHHHHhhhc
Q psy17711 225 RADVFNKMVNDTCTLS 240 (335)
Q Consensus 225 ~p~~~~~~I~~fl~~~ 240 (335)
+|+++++.|.+|+++.
T Consensus 464 ~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 464 RQKEFARELEEIWRRS 479 (481)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999999754
No 7
>KOG4178|consensus
Probab=99.88 E-value=8.8e-22 Score=164.62 Aligned_cols=225 Identities=18% Similarity=0.245 Sum_probs=129.1
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.|.. ...|++..++.|+..+++++|.++++++||+||+++|+.+|..+|++|+++|+++.+...........
T Consensus 82 yG~Sd~P~~--~~~Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~- 158 (322)
T KOG4178|consen 82 YGFSDAPPH--ISEYTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDS- 158 (322)
T ss_pred CCCCCCCCC--cceeeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhh-
Confidence 699998873 25788899999999999999999999999999999999999999999999999997654111000000
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCch-hhHHhhh-CCCcc---------cccCCCCccchhHHHHHHHHhhhcC-C
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLG-QWVVEKM-RPDLP---------KKFTPVLKEDSSAITEYIFQCNVQA-P 148 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (335)
....+.... .......+........... ....... ..... ..-..++...+ ++.+........ .
T Consensus 159 -~~~~f~~~~-y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~ed--i~~~~~~f~~~g~~ 234 (322)
T KOG4178|consen 159 -SKAIFGKSY-YICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEED--IAFYVSKFQIDGFT 234 (322)
T ss_pred -hccccCccc-eeEeccccCcchhhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHH--HHHHHhcccccccc
Confidence 000000000 0000000000000000000 0000000 00000 00011122222 333332221111 1
Q ss_pred ChHHHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC--CCchhHHHHHHhcCCCceEEEEeCCCCccccccCh
Q psy17711 149 SGESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV--DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRA 226 (335)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~--~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p 226 (335)
...+.++.+.+... ........+ ++|+++|+|+.|.+ .+...+.+.+.+++ . .+.++++|+||+++.|+|
T Consensus 235 gplNyyrn~~r~w~----a~~~~~~~i--~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~-l-~~~vv~~~~gH~vqqe~p 306 (322)
T KOG4178|consen 235 GPLNYYRNFRRNWE----AAPWALAKI--TIPVLFIWGDLDPVLPYPIFGELYRKDVPR-L-TERVVIEGIGHFVQQEKP 306 (322)
T ss_pred ccchhhHHHhhCch----hcccccccc--ccceEEEEecCcccccchhHHHHHHHhhcc-c-cceEEecCCcccccccCH
Confidence 12222333322211 011122333 89999999999998 44567778888887 1 378999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q psy17711 227 DVFNKMVNDTCTLS 240 (335)
Q Consensus 227 ~~~~~~I~~fl~~~ 240 (335)
++++++|.+|+++.
T Consensus 307 ~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 307 QEVNQAILGFINSF 320 (322)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 8
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.88 E-value=4.7e-22 Score=177.18 Aligned_cols=224 Identities=16% Similarity=0.170 Sum_probs=123.1
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHh-CCchhceeeEecCCCCCCCCCCcc-
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ-YPDRVKHLILADPWGFPQKSIDPQ- 78 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~-~P~~v~~lvli~~~~~~~~~~~~~- 78 (335)
||.|+.+.. ..++++++++++.+++++++.++++|+||||||.+++.+|.. +|++|+++|++++...........
T Consensus 125 ~G~S~~~~~---~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~ 201 (360)
T PLN02679 125 FGASDKPPG---FSYTMETWAELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDD 201 (360)
T ss_pred CCCCCCCCC---ccccHHHHHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccch
Confidence 799987642 246778999999999999999999999999999999999874 799999999999864322111000
Q ss_pred -cccchHHHHHHhhhhcccCCCCCcccccCCc-hhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHH
Q psy17711 79 -KASKIPLWARMIGNLYKNFNPLWPVRFVGPL-GQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHT 156 (335)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (335)
................. . +.......... ........ +...+...-.-.+. ..+..... .........+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 274 (360)
T PLN02679 202 WRIKLLLPLLWLIDFLLK-Q-RGIASALFNRVKQRDNLKNI---LLSVYGNKEAVDDE-LVEIIRGP-ADDEGALDAFVS 274 (360)
T ss_pred HHHhhhcchHHHHHHHhh-c-hhhHHHHHHHhcCHHHHHHH---HHHhccCcccCCHH-HHHHHHhh-ccCCChHHHHHH
Confidence 00000000000000000 0 00000000000 00000000 00000000000111 11111111 111122222222
Q ss_pred hhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCch-----hHHHHHHhcCCCceEEEEeCCCCccccccChHHHH
Q psy17711 157 LTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSS-----GDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFN 230 (335)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~-----~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~ 230 (335)
..... ........+..+ ++|+|+|+|++|.+ +++. .+.+.+.+++ +++++++++||++++|+|++++
T Consensus 275 ~~~~~--~~~~~~~~l~~i--~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~---~~l~~i~~aGH~~~~E~Pe~~~ 347 (360)
T PLN02679 275 IVTGP--PGPNPIKLIPRI--SLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPN---VTLYVLEGVGHCPHDDRPDLVH 347 (360)
T ss_pred HHhcC--CCCCHHHHhhhc--CCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCc---eEEEEcCCCCCCccccCHHHHH
Confidence 22111 111122344555 99999999999998 6653 2345556777 8999999999999999999999
Q ss_pred HHHHHHhhhch
Q psy17711 231 KMVNDTCTLSD 241 (335)
Q Consensus 231 ~~I~~fl~~~~ 241 (335)
+.|.+|++++.
T Consensus 348 ~~I~~FL~~~~ 358 (360)
T PLN02679 348 EKLLPWLAQLP 358 (360)
T ss_pred HHHHHHHHhcC
Confidence 99999998653
No 9
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.88 E-value=2.3e-21 Score=174.63 Aligned_cols=239 Identities=32% Similarity=0.555 Sum_probs=139.6
Q ss_pred CCCCCCCCCCCCh-hccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcc-
Q psy17711 1 FGRSSRPRFSTDP-ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQ- 78 (335)
Q Consensus 1 hG~S~~~~~~~~~-~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~- 78 (335)
||.|+++...... ....+.+++++.++++.++.++++|+||||||.+++.+|.++|++|+++|+++|.+.........
T Consensus 142 ~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~ 221 (402)
T PLN02894 142 WGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSE 221 (402)
T ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHH
Confidence 6888876532221 22223577888899999999999999999999999999999999999999999876544332110
Q ss_pred -cccchHHHHHHhhhh--cccCCCCCcccccCCchhhHHhhhCCC-cccccC-CCCc-cchhHHHHHHHHhhhcCCChHH
Q psy17711 79 -KASKIPLWARMIGNL--YKNFNPLWPVRFVGPLGQWVVEKMRPD-LPKKFT-PVLK-EDSSAITEYIFQCNVQAPSGES 152 (335)
Q Consensus 79 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (335)
.......|...+... .....+....+..+++...+....... +..... ..+. .....+.+++.......+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 301 (402)
T PLN02894 222 WLTKFRATWKGAVLNHLWESNFTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGEL 301 (402)
T ss_pred HHhhcchhHHHHHHHHHhhcCCCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHH
Confidence 000001111111000 011222222222222222221111100 000000 0011 1122244455555444444444
Q ss_pred HHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHH
Q psy17711 153 AFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~ 232 (335)
.+........+...+....+..+ ++|+++|+|++|.+.+.....+.+..+. .+++++++++||+++.|+|++|++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~I--~vP~liI~G~~D~i~~~~~~~~~~~~~~--~~~~~~i~~aGH~~~~E~P~~f~~~ 377 (402)
T PLN02894 302 CLKYIFSFGAFARKPLLESASEW--KVPTTFIYGRHDWMNYEGAVEARKRMKV--PCEIIRVPQGGHFVFLDNPSGFHSA 377 (402)
T ss_pred HHHHhccCchhhcchHhhhcccC--CCCEEEEEeCCCCCCcHHHHHHHHHcCC--CCcEEEeCCCCCeeeccCHHHHHHH
Confidence 34433322223334444555555 9999999999998844555566655532 2789999999999999999999999
Q ss_pred HHHHhhhchhh
Q psy17711 233 VNDTCTLSDEK 243 (335)
Q Consensus 233 I~~fl~~~~~~ 243 (335)
|.+|++.....
T Consensus 378 l~~~~~~~~~~ 388 (402)
T PLN02894 378 VLYACRKYLSP 388 (402)
T ss_pred HHHHHHHhccC
Confidence 99999877554
No 10
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.88 E-value=2.5e-21 Score=167.34 Aligned_cols=210 Identities=20% Similarity=0.298 Sum_probs=120.7
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||+|+.+..... .+ ..+++|+.+++++++.++++++||||||.+++.+|.++|++|+++|++++.............
T Consensus 71 ~G~S~~~~~~~~--~~-~~~~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 147 (282)
T TIGR03343 71 FNKSDAVVMDEQ--RG-LVNARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPM 147 (282)
T ss_pred CCCCCCCcCccc--cc-chhHHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCch
Confidence 788876542211 12 256899999999999999999999999999999999999999999999975432110000000
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
.....+... ... + . .............. .... ............ ...+.....+......
T Consensus 148 ~~~~~~~~~----~~~--~--~-------~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 207 (282)
T TIGR03343 148 EGIKLLFKL----YAE--P--S-------YETLKQMLNVFLFD--QSLI--TEELLQGRWENI-QRQPEHLKNFLISSQK 207 (282)
T ss_pred HHHHHHHHH----hcC--C--C-------HHHHHHHHhhCccC--cccC--cHHHHHhHHHHh-hcCHHHHHHHHHhccc
Confidence 000001000 000 0 0 00000000000000 0000 000001000000 0000000000000000
Q ss_pred cCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 161 LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 161 ~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
......+....+..+ ++|+|+++|++|.+ +++..+.+.+.+++ +++++++++||+++.|+|+++++.|.+|++
T Consensus 208 ~~~~~~~~~~~l~~i--~~Pvlli~G~~D~~v~~~~~~~~~~~~~~---~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 208 APLSTWDVTARLGEI--KAKTLVTWGRDDRFVPLDHGLKLLWNMPD---AQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred cccccchHHHHHhhC--CCCEEEEEccCCCcCCchhHHHHHHhCCC---CEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 001111222334555 99999999999998 88999999999998 999999999999999999999999999986
No 11
>PRK06489 hypothetical protein; Provisional
Probab=99.87 E-value=6.1e-21 Score=170.31 Aligned_cols=227 Identities=13% Similarity=0.126 Sum_probs=124.0
Q ss_pred CCCCCCCCCCC---ChhccHHHHHHHHHHH-HHHhCCCcEE-EEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCC
Q psy17711 1 FGRSSRPRFST---DPETVERQLVTSIEEW-RKELKLQEMI-LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSI 75 (335)
Q Consensus 1 hG~S~~~~~~~---~~~~~~~~~~~dl~~l-l~~lg~~~~~-lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~ 75 (335)
||.|+.+.... ...|+++++++++.++ ++++++++++ ++||||||++|+.+|.++|++|+++|++++........
T Consensus 116 hG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~ 195 (360)
T PRK06489 116 HGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGR 195 (360)
T ss_pred CCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHH
Confidence 78998765321 1246789999998885 5889999985 89999999999999999999999999998753221110
Q ss_pred CcccccchHHH-HHHhhhhcccCCCCCcccccCCchhh--HHhhhCCCcccccCCCCccchhHHHHHHHHhhhc--CCCh
Q psy17711 76 DPQKASKIPLW-ARMIGNLYKNFNPLWPVRFVGPLGQW--VVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQ--APSG 150 (335)
Q Consensus 76 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 150 (335)
.. ..... ......... ................ ............+... .........+....... ....
T Consensus 196 ~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 269 (360)
T PRK06489 196 NW----MWRRMLIESIRNDPA-WNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQ-APTRAAADKLVDERLAAPVTADA 269 (360)
T ss_pred HH----HHHHHHHHHHHhCCC-CCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHh-cCChHHHHHHHHHHHHhhhhcCH
Confidence 00 00000 000000000 0000000000000000 0000000000000000 00000011111111100 0111
Q ss_pred HHHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchh--HHHHHHhcCCCceEEEEeCCC----Cccccc
Q psy17711 151 ESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSG--DKIKEARSQNSFVQVKSVTGA----GHHVYA 223 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~--~~l~~~~~~~~~~~~~~i~~~----gH~~~~ 223 (335)
............++ ....+..+ ++|+|+|+|++|.+ +++.. +.+.+.+|+ .++++++++ ||.++
T Consensus 270 ~~~~~~~~~~~~~d---~~~~L~~I--~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~---a~l~~i~~a~~~~GH~~~- 340 (360)
T PRK06489 270 NDFLYQWDSSRDYN---PSPDLEKI--KAPVLAINSADDERNPPETGVMEAALKRVKH---GRLVLIPASPETRGHGTT- 340 (360)
T ss_pred HHHHHHHHHhhccC---hHHHHHhC--CCCEEEEecCCCcccChhhHHHHHHHHhCcC---CeEEEECCCCCCCCcccc-
Confidence 11111111111122 23445555 99999999999998 77765 788999998 899999996 99997
Q ss_pred cChHHHHHHHHHHhhhchh
Q psy17711 224 DRADVFNKMVNDTCTLSDE 242 (335)
Q Consensus 224 e~p~~~~~~I~~fl~~~~~ 242 (335)
|+|++|++.|.+|++.+.+
T Consensus 341 e~P~~~~~~i~~FL~~~~~ 359 (360)
T PRK06489 341 GSAKFWKAYLAEFLAQVPK 359 (360)
T ss_pred cCHHHHHHHHHHHHHhccc
Confidence 8999999999999987643
No 12
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.86 E-value=3.4e-21 Score=168.11 Aligned_cols=211 Identities=18% Similarity=0.290 Sum_probs=120.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+... ..++++++++|+.+++++++.++++++||||||.+++.+|.++|++|+++|++++..........
T Consensus 84 ~G~S~~~~~~--~~~~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~--- 158 (302)
T PRK00870 84 FGRSDKPTRR--EDYTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMP--- 158 (302)
T ss_pred CCCCCCCCCc--ccCCHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccch---
Confidence 7999876422 24667999999999999999999999999999999999999999999999999974321111000
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhc-CCChHHHHHHhhh
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQ-APSGESAFHTLTE 159 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (335)
.....|.. .... .+.... ..... ......+... ....+....... .......+..+..
T Consensus 159 ~~~~~~~~----~~~~-~~~~~~-------~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (302)
T PRK00870 159 DAFWAWRA----FSQY-SPVLPV-------GRLVN-------GGTVRDLSDA--VRAAYDAPFPDESYKAGARAFPLLVP 217 (302)
T ss_pred HHHhhhhc----cccc-CchhhH-------HHHhh-------ccccccCCHH--HHHHhhcccCChhhhcchhhhhhcCC
Confidence 00111110 0000 000000 00000 0000000000 001110000000 0000000000000
Q ss_pred ccC-----CccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHH
Q psy17711 160 GLG-----YAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMV 233 (335)
Q Consensus 160 ~~~-----~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I 233 (335)
... .........+..+ ++|+++|+|++|.+ +... +.+.+.+++..+..+++++++||++++|+|+++++.|
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~i--~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l 294 (302)
T PRK00870 218 TSPDDPAVAANRAAWAVLERW--DKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAV 294 (302)
T ss_pred CCCCCcchHHHHHHHHhhhcC--CCceEEEecCCCCcccCch-HHHHhhcccccccceeeecCCCccchhhChHHHHHHH
Confidence 000 0000112233444 99999999999999 7655 8899988871123488999999999999999999999
Q ss_pred HHHhhhc
Q psy17711 234 NDTCTLS 240 (335)
Q Consensus 234 ~~fl~~~ 240 (335)
.+|++..
T Consensus 295 ~~fl~~~ 301 (302)
T PRK00870 295 LEFIRAT 301 (302)
T ss_pred HHHHhcC
Confidence 9999754
No 13
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.86 E-value=7.3e-21 Score=161.94 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=120.9
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+. .++++++++|+.++++.++.++++++||||||.+++.+|.++|++|+++|++++.+.......
T Consensus 53 ~G~s~~~~-----~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~---- 123 (255)
T PRK10673 53 HGLSPRDP-----VMNYPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRR---- 123 (255)
T ss_pred CCCCCCCC-----CCCHHHHHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchh----
Confidence 68887643 356789999999999999999999999999999999999999999999999986432211100
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCC--h-HHHHHHh
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPS--G-ESAFHTL 157 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ 157 (335)
...+.......... .. ... ...... +...+.... ...+.......... . ......+
T Consensus 124 --~~~~~~~~~~~~~~----~~----~~~-~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (255)
T PRK10673 124 --HDEIFAAINAVSEA----GA----TTR-QQAAAI--------MRQHLNEEG--VIQFLLKSFVDGEWRFNVPVLWDQY 182 (255)
T ss_pred --hHHHHHHHHHhhhc----cc----ccH-HHHHHH--------HHHhcCCHH--HHHHHHhcCCcceeEeeHHHHHHhH
Confidence 00111111100000 00 000 000000 000000000 11111111100000 0 0000001
Q ss_pred hhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHH
Q psy17711 158 TEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDT 236 (335)
Q Consensus 158 ~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~f 236 (335)
..... ...+..+ ++|+|+|+|++|.. +++..+.+.+.+++ +++++++++||++++++|+++++.|.+|
T Consensus 183 ~~~~~------~~~~~~~--~~P~l~i~G~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~p~~~~~~l~~f 251 (255)
T PRK10673 183 PHIVG------WEKIPAW--PHPALFIRGGNSPYVTEAYRDDLLAQFPQ---ARAHVIAGAGHWVHAEKPDAVLRAIRRY 251 (255)
T ss_pred HHHhC------CcccCCC--CCCeEEEECCCCCCCCHHHHHHHHHhCCC---cEEEEeCCCCCeeeccCHHHHHHHHHHH
Confidence 00000 1112233 89999999999988 88899999999988 8999999999999999999999999999
Q ss_pred hhh
Q psy17711 237 CTL 239 (335)
Q Consensus 237 l~~ 239 (335)
+..
T Consensus 252 l~~ 254 (255)
T PRK10673 252 LND 254 (255)
T ss_pred Hhc
Confidence 964
No 14
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.86 E-value=1.9e-20 Score=161.83 Aligned_cols=209 Identities=17% Similarity=0.318 Sum_probs=119.6
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+. +..++++++++++.+++++++.++++++||||||.+++.+|..+|++|+++|++++...+.... .
T Consensus 71 ~G~S~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~---~- 143 (286)
T PRK03204 71 FGLSERPS---GFGYQIDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTL---A- 143 (286)
T ss_pred CCCCCCCC---ccccCHHHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCch---h-
Confidence 78888765 2246678999999999999999999999999999999999999999999999988754221100 0
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
...+..... ........ .. .......... .......+. .....+. .. ...+.....+......
T Consensus 144 --~~~~~~~~~---~~~~~~~~---~~--~~~~~~~~~~---~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~~~~~~~~ 206 (286)
T PRK03204 144 --MKAFSRVMS---SPPVQYAI---LR--RNFFVERLIP---AGTEHRPSS--AVMAHYR-AV-QPNAAARRGVAEMPKQ 206 (286)
T ss_pred --HHHHHHHhc---cccchhhh---hh--hhHHHHHhcc---ccccCCCCH--HHHHHhc-CC-CCCHHHHHHHHHHHHh
Confidence 000100000 00000000 00 0000000000 000000110 0011111 00 0000111111000000
Q ss_pred cCCccchhhh----hhhhhcCCCCEEEEeeCCCCC-CCc-hhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHH
Q psy17711 161 LGYAKRPMLH----RVDQLAAHVPVTVIYGSRSWV-DNS-SGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVN 234 (335)
Q Consensus 161 ~~~~~~~~~~----~l~~i~i~~PvLii~G~~D~~-~~~-~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~ 234 (335)
+... ..... .+....+++|+++|+|++|.+ ++. ..+.+.+.+++ .++++++++||++++|+|+++++.|.
T Consensus 207 ~~~~-~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~---~~~~~i~~aGH~~~~e~Pe~~~~~i~ 282 (286)
T PRK03204 207 ILAA-RPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPD---HVLVELPNAKHFIQEDAPDRIAAAII 282 (286)
T ss_pred cchh-hHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCC---CeEEEcCCCcccccccCHHHHHHHHH
Confidence 0000 00111 111112279999999999987 554 57889999998 89999999999999999999999999
Q ss_pred HHh
Q psy17711 235 DTC 237 (335)
Q Consensus 235 ~fl 237 (335)
+|+
T Consensus 283 ~~~ 285 (286)
T PRK03204 283 ERF 285 (286)
T ss_pred Hhc
Confidence 997
No 15
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.86 E-value=2.5e-20 Score=160.59 Aligned_cols=213 Identities=17% Similarity=0.226 Sum_probs=123.8
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+.. ..++++++++|+.+++++++.++++|+||||||.+++.+|.++|++++++|++++............
T Consensus 65 ~G~S~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~- 140 (278)
T TIGR03056 65 HGFTRAPFR---FRFTLPSMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTL- 140 (278)
T ss_pred CCCCCCccc---cCCCHHHHHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccc-
Confidence 788876652 2457799999999999999999999999999999999999999999999999988543221100000
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
.+.+...... ....+..... ........ .. ........+.... ...+. ... ............ .
T Consensus 141 --~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~~----~~~~~~~~~~~~~--~~~~~-~~~-~~~~~~~~~~~~--~ 204 (278)
T TIGR03056 141 --FPYMARVLAC--NPFTPPMMSR-GAADQQRV-ER----LIRDTGSLLDKAG--MTYYG-RLI-RSPAHVDGALSM--M 204 (278)
T ss_pred --cchhhHhhhh--cccchHHHHh-hcccCcch-hH----Hhhccccccccch--hhHHH-Hhh-cCchhhhHHHHH--h
Confidence 0000000000 0000000000 00000000 00 0000000011100 11111 000 000000000000 1
Q ss_pred cCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 161 LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 161 ~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
..+........+..+ ++|+++|+|++|.+ +++..+.+.+.+++ ++++.++++||+++.|.|+++++.|.+|++
T Consensus 205 ~~~~~~~~~~~~~~i--~~P~lii~g~~D~~vp~~~~~~~~~~~~~---~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 205 AQWDLAPLNRDLPRI--TIPLHLIAGEEDKAVPPDESKRAATRVPT---ATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred hcccccchhhhcccC--CCCEEEEEeCCCcccCHHHHHHHHHhccC---CeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 112222222334444 89999999999998 88889999999988 899999999999999999999999999984
No 16
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.86 E-value=4.4e-20 Score=164.13 Aligned_cols=213 Identities=20% Similarity=0.238 Sum_probs=123.1
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+.......++++++++++.++++++++++++|+|||+||.+++.+|..+|++|+++|+++++.......
T Consensus 164 ~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~----- 238 (383)
T PLN03084 164 FGFSDKPQPGYGFNYTLDEYVSSLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAK----- 238 (383)
T ss_pred CCCCCCCcccccccCCHHHHHHHHHHHHHHhCCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCcccccc-----
Confidence 799988764333457889999999999999999999999999999999999999999999999999864321110
Q ss_pred cchHHHHHHhhh-hcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhh
Q psy17711 81 SKIPLWARMIGN-LYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTE 159 (335)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
.+.....+.. ......... .. ......+......... .+....+..... ........+..+..
T Consensus 239 --~p~~l~~~~~~l~~~~~~~~------~~-----~~~~~~~~~~~~~~~~--~e~~~~~~~~~~-~~~~~~~~l~~~~r 302 (383)
T PLN03084 239 --LPSTLSEFSNFLLGEIFSQD------PL-----RASDKALTSCGPYAMK--EDDAMVYRRPYL-TSGSSGFALNAISR 302 (383)
T ss_pred --chHHHHHHHHHHhhhhhhcc------hH-----HHHhhhhcccCccCCC--HHHHHHHhcccc-CCcchHHHHHHHHH
Confidence 0111111000 000000000 00 0000000000000000 100111111110 00000011111111
Q ss_pred ccCCccchhhhhhh----hhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHH
Q psy17711 160 GLGYAKRPMLHRVD----QLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVN 234 (335)
Q Consensus 160 ~~~~~~~~~~~~l~----~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~ 234 (335)
.+..........+. ...+++|+++|+|++|.+ +++..+.+.+. .+ .+++++++|||++++|+|+++++.|.
T Consensus 303 ~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~---a~l~vIp~aGH~~~~E~Pe~v~~~I~ 378 (383)
T PLN03084 303 SMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKS-SQ---HKLIELPMAGHHVQEDCGEELGGIIS 378 (383)
T ss_pred HhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHh-cC---CeEEEECCCCCCcchhCHHHHHHHHH
Confidence 11000011111111 113499999999999988 88877887776 45 78999999999999999999999999
Q ss_pred HHhh
Q psy17711 235 DTCT 238 (335)
Q Consensus 235 ~fl~ 238 (335)
+|+.
T Consensus 379 ~Fl~ 382 (383)
T PLN03084 379 GILS 382 (383)
T ss_pred HHhh
Confidence 9986
No 17
>KOG1454|consensus
Probab=99.86 E-value=9.5e-21 Score=164.74 Aligned_cols=222 Identities=20% Similarity=0.231 Sum_probs=125.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceee---EecCCCCCCCCCCc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI---LADPWGFPQKSIDP 77 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lv---li~~~~~~~~~~~~ 77 (335)
||.|+..+ .+..|+..++++-+..++...+.+++++||||+||.+|+.+|+.+|+.|+++| ++++..........
T Consensus 97 ~g~~s~~~--~~~~y~~~~~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~ 174 (326)
T KOG1454|consen 97 HGYSSPLP--RGPLYTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIK 174 (326)
T ss_pred CCcCCCCC--CCCceehhHHHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchh
Confidence 56444333 23458889999999999999999999999999999999999999999999999 44444433332211
Q ss_pred ccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhc--CCChHHHHH
Q psy17711 78 QKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQ--APSGESAFH 155 (335)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (335)
... ..............+.........+ ......................+...... .......+.
T Consensus 175 ~~~----~~~~~~~~~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (326)
T KOG1454|consen 175 GLR----RLLDKFLSALELLIPLSLTEPVRLV--------SEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARL 242 (326)
T ss_pred HHH----HhhhhhccHhhhcCccccccchhhe--------eHhhhcceeeeccccccchhhhhhheecccccchhhhhee
Confidence 111 1111111111111111100000000 00000000000000000011111100000 001111111
Q ss_pred HhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHH
Q psy17711 156 TLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVN 234 (335)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~ 234 (335)
.+..............+..+ .+||+|+++|++|.+ +.+.++.+.+.+++ +++++++++||.+++|+|+++++.|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i-~~~pvlii~G~~D~~~p~~~~~~~~~~~pn---~~~~~I~~~gH~~h~e~Pe~~~~~i~ 318 (326)
T KOG1454|consen 243 SLFLELLGFDENLLSLIKKI-WKCPVLIIWGDKDQIVPLELAEELKKKLPN---AELVEIPGAGHLPHLERPEEVAALLR 318 (326)
T ss_pred eEEEeccCccchHHHhhccc-cCCceEEEEcCcCCccCHHHHHHHHhhCCC---ceEEEeCCCCcccccCCHHHHHHHHH
Confidence 11111111011222233333 149999999999999 98989999998888 99999999999999999999999999
Q ss_pred HHhhhc
Q psy17711 235 DTCTLS 240 (335)
Q Consensus 235 ~fl~~~ 240 (335)
.|+.+.
T Consensus 319 ~Fi~~~ 324 (326)
T KOG1454|consen 319 SFIARL 324 (326)
T ss_pred HHHHHh
Confidence 999865
No 18
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.85 E-value=2.3e-20 Score=158.99 Aligned_cols=204 Identities=12% Similarity=0.073 Sum_probs=114.9
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+. .++++++++++.+ ++.++++++||||||.+++.+|.++|++|+++|++++.+.........
T Consensus 50 ~G~S~~~~-----~~~~~~~~~~l~~----~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~-- 118 (256)
T PRK10349 50 FGRSRGFG-----ALSLADMAEAVLQ----QAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWP-- 118 (256)
T ss_pred CCCCCCCC-----CCCHHHHHHHHHh----cCCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCC--
Confidence 68887542 2455777776653 567899999999999999999999999999999998753321111100
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHH-hhh
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHT-LTE 159 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (335)
.....+...+....... ... ........ ..+..... ......+................. ...
T Consensus 119 ~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (256)
T PRK10349 119 GIKPDVLAGFQQQLSDD----FQR----TVERFLAL------QTMGTETA--RQDARALKKTVLALPMPEVDVLNGGLEI 182 (256)
T ss_pred cccHHHHHHHHHHHHhc----hHH----HHHHHHHH------HHccCchH--HHHHHHHHHHhhccCCCcHHHHHHHHHH
Confidence 00011111110000000 000 00000000 00000000 000111111110011011111110 000
Q ss_pred ccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 160 GLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 160 ~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
.... +....+..+ ++|+|+++|++|.+ +.+..+.+.+.+++ +++++++++||++++|+|++|++.|.+|-+
T Consensus 183 ~~~~---~~~~~l~~i--~~P~lii~G~~D~~~~~~~~~~~~~~i~~---~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 183 LKTV---DLRQPLQNV--SMPFLRLYGYLDGLVPRKVVPMLDKLWPH---SESYIFAKAAHAPFISHPAEFCHLLVALKQ 254 (256)
T ss_pred HHhC---ccHHHHhhc--CCCeEEEecCCCccCCHHHHHHHHHhCCC---CeEEEeCCCCCCccccCHHHHHHHHHHHhc
Confidence 0111 122344445 99999999999998 88888999999998 899999999999999999999999999865
Q ss_pred h
Q psy17711 239 L 239 (335)
Q Consensus 239 ~ 239 (335)
+
T Consensus 255 ~ 255 (256)
T PRK10349 255 R 255 (256)
T ss_pred c
Confidence 4
No 19
>PRK07581 hypothetical protein; Validated
Probab=99.85 E-value=1.4e-20 Score=166.89 Aligned_cols=68 Identities=6% Similarity=-0.032 Sum_probs=60.7
Q ss_pred hhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCC-CCccccccChHHHHHHHHHHhhhch
Q psy17711 169 LHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTG-AGHHVYADRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 169 ~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~-~gH~~~~e~p~~~~~~I~~fl~~~~ 241 (335)
...+..+ +||+|+|+|++|.+ ++...+.+.+.+++ ++++++++ +||++++|+|+++++.|.+|+.++.
T Consensus 268 ~~~L~~I--~~PtLvI~G~~D~~~p~~~~~~l~~~ip~---a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 268 AAALGSI--TAKTFVMPISTDLYFPPEDCEAEAALIPN---AELRPIESIWGHLAGFGQNPADIAFIDAALKELL 337 (339)
T ss_pred HHHHhcC--CCCEEEEEeCCCCCCCHHHHHHHHHhCCC---CeEEEeCCCCCccccccCcHHHHHHHHHHHHHHH
Confidence 3445555 99999999999998 88889999999988 89999998 9999999999999999999998764
No 20
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.85 E-value=3.6e-20 Score=157.40 Aligned_cols=206 Identities=17% Similarity=0.314 Sum_probs=122.8
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+. ...++++++++++.+++++++.++++++||||||.+++.+|.++|++|+++|++++.........
T Consensus 50 ~G~S~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~---- 122 (257)
T TIGR03611 50 TGRSPGEL---PPGYSIAHMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTR---- 122 (257)
T ss_pred CCCCCCCC---cccCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHH----
Confidence 68887653 23467799999999999999999999999999999999999999999999999997543221100
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
....... ................ .. .....+ +........................+......
T Consensus 123 ~~~~~~~----~~~~~~~~~~~~~~~~---~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (257)
T TIGR03611 123 RCFDVRI----ALLQHAGPEAYVHAQA---LF---LYPADW-------ISENAARLAADEAHALAHFPGKANVLRRINAL 185 (257)
T ss_pred HHHHHHH----HHHhccCcchhhhhhh---hh---hccccH-------hhccchhhhhhhhhcccccCccHHHHHHHHHH
Confidence 0000000 0000000000000000 00 000000 00000000000000000000111111111111
Q ss_pred cCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 161 LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 161 ~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
..++. ...+..+ ++|+++++|++|.+ +++..+.+.+.+++ .+++.++++||++++++|+++++.|.+|++
T Consensus 186 ~~~~~---~~~~~~i--~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 186 EAFDV---SARLDRI--QHPVLLIANRDDMLVPYTQSLRLAAALPN---AQLKLLPYGGHASNVTDPETFNRALLDFLK 256 (257)
T ss_pred HcCCc---HHHhccc--CccEEEEecCcCcccCHHHHHHHHHhcCC---ceEEEECCCCCCccccCHHHHHHHHHHHhc
Confidence 11111 2334444 99999999999998 88888999999888 889999999999999999999999999986
No 21
>PLN02578 hydrolase
Probab=99.85 E-value=6e-20 Score=163.51 Aligned_cols=221 Identities=16% Similarity=0.233 Sum_probs=123.7
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+++.. .++.+++++++.++++.++.++++++||||||.+++.+|.++|++|+++|++++.+...........
T Consensus 123 ~G~S~~~~~----~~~~~~~a~~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~ 198 (354)
T PLN02578 123 FGWSDKALI----EYDAMVWRDQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEE 198 (354)
T ss_pred CCCCCCccc----ccCHHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCcccccccccccc
Confidence 788887653 3566889999999999999999999999999999999999999999999999976543222110000
Q ss_pred ------cchHH-HHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHH
Q psy17711 81 ------SKIPL-WARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESA 153 (335)
Q Consensus 81 ------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (335)
..... .................. ............. ...+...-..++ ......... ...+.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 271 (354)
T PLN02578 199 AIVVEETVLTRFVVKPLKEWFQRVVLGFLF-WQAKQPSRIESVL----KSVYKDKSNVDD-YLVESITEP-AADPNAGEV 271 (354)
T ss_pred ccccccchhhHHHhHHHHHHHHHHHHHHHH-HHhcCHHHHHHHH----HHhcCCcccCCH-HHHHHHHhc-ccCCchHHH
Confidence 00000 000000000000000000 0000000000000 000000000000 011111111 011111111
Q ss_pred HHHhhhc-cC-CccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHH
Q psy17711 154 FHTLTEG-LG-YAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFN 230 (335)
Q Consensus 154 ~~~~~~~-~~-~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~ 230 (335)
+...... .. .......+.+..+ ++|+++|+|++|.+ +.+..+.+.+.+++ .+++++ ++||+++.|+|++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~i--~~PvLiI~G~~D~~v~~~~~~~l~~~~p~---a~l~~i-~~GH~~~~e~p~~~~ 345 (354)
T PLN02578 272 YYRLMSRFLFNQSRYTLDSLLSKL--SCPLLLLWGDLDPWVGPAKAEKIKAFYPD---TTLVNL-QAGHCPHDEVPEQVN 345 (354)
T ss_pred HHHHHHHHhcCCCCCCHHHHhhcC--CCCEEEEEeCCCCCCCHHHHHHHHHhCCC---CEEEEe-CCCCCccccCHHHHH
Confidence 1111111 10 0011122334444 99999999999988 88899999999988 888888 489999999999999
Q ss_pred HHHHHHhh
Q psy17711 231 KMVNDTCT 238 (335)
Q Consensus 231 ~~I~~fl~ 238 (335)
+.|.+|++
T Consensus 346 ~~I~~fl~ 353 (354)
T PLN02578 346 KALLEWLS 353 (354)
T ss_pred HHHHHHHh
Confidence 99999985
No 22
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.85 E-value=2.4e-19 Score=160.82 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=122.7
Q ss_pred hccHHHHHHHHHHHHHHhCCCc-EEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhh
Q psy17711 14 ETVERQLVTSIEEWRKELKLQE-MILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGN 92 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~lg~~~-~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (335)
.++++++++++.++++++++++ ++++||||||++++.+|.++|++|+++|++++........ ..|......
T Consensus 126 ~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~--------~~~~~~~~~ 197 (379)
T PRK00175 126 VITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQN--------IAFNEVARQ 197 (379)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHH--------HHHHHHHHH
Confidence 5788999999999999999999 5999999999999999999999999999999754322110 001110000
Q ss_pred hcccCCCCC---ccc-ccCCc----------------hhhHHhhhCCCcccccCCCCccchhHHHHHHHH----hh-hcC
Q psy17711 93 LYKNFNPLW---PVR-FVGPL----------------GQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQ----CN-VQA 147 (335)
Q Consensus 93 ~~~~~~~~~---~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~ 147 (335)
......... ... ..... .......+.....................+... .. ...
T Consensus 198 ~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d 277 (379)
T PRK00175 198 AILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFD 277 (379)
T ss_pred HHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccC
Confidence 000000000 000 00000 000000010000000000000000001111110 00 001
Q ss_pred CChHHHHHHhhhccCC---ccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeC-CCCccc
Q psy17711 148 PSGESAFHTLTEGLGY---AKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVT-GAGHHV 221 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~-~~gH~~ 221 (335)
+............... ...+....+..+ ++|+|+|+|++|.+ +++..+.+.+.+++ .+++++++++ ++||++
T Consensus 278 ~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I--~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~ 355 (379)
T PRK00175 278 ANSYLYLTRALDYFDPARGRGGDLAAALARI--KARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDA 355 (379)
T ss_pred chHHHHHHHHHHhccccCCCCCCHHHHHhcC--CCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchh
Confidence 1111111111111110 001234555666 99999999999998 99999999999988 1123778785 899999
Q ss_pred cccChHHHHHHHHHHhhhchh
Q psy17711 222 YADRADVFNKMVNDTCTLSDE 242 (335)
Q Consensus 222 ~~e~p~~~~~~I~~fl~~~~~ 242 (335)
++|+|+++++.|.+||.+...
T Consensus 356 ~le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 356 FLLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred HhcCHHHHHHHHHHHHHhhhh
Confidence 999999999999999987643
No 23
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.84 E-value=4e-20 Score=164.50 Aligned_cols=207 Identities=19% Similarity=0.201 Sum_probs=119.2
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCC------cEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQ------EMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~------~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
||.|+.+. ....+++++++|+.++++.++.+ +++|+||||||++++.+|.++|++|+++|+++|.......
T Consensus 126 ~G~S~~~~---~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~ 202 (349)
T PLN02385 126 FGLSEGLH---GYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADD 202 (349)
T ss_pred CCCCCCCC---CCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccccccccc
Confidence 78888653 22346689999999999887643 7999999999999999999999999999999986432211
Q ss_pred CCcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchh--HHHHHHHHhhhcCCChHH
Q psy17711 75 IDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSS--AITEYIFQCNVQAPSGES 152 (335)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 152 (335)
.. ...........+... .+.... .. .. .+......+.. ....+.............
T Consensus 203 ~~--~~~~~~~~~~~~~~~----~p~~~~--~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
T PLN02385 203 VV--PPPLVLQILILLANL----LPKAKL--VP----------QK----DLAELAFRDLKKRKMAEYNVIAYKDKPRLRT 260 (349)
T ss_pred cc--CchHHHHHHHHHHHH----CCCcee--cC----------CC----ccccccccCHHHHHHhhcCcceeCCCcchHH
Confidence 00 000011111111111 010000 00 00 00000000000 000000000000000001
Q ss_pred HHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHH---
Q psy17711 153 AFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADV--- 228 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~--- 228 (335)
.+..+... ......+..+ ++|+|+|+|++|.+ ++...+.+.+.++. ++.++++++++||+++.|+|++
T Consensus 261 ~~~~l~~~-----~~~~~~l~~i--~~P~Lii~G~~D~vv~~~~~~~l~~~~~~-~~~~l~~i~~~gH~l~~e~p~~~~~ 332 (349)
T PLN02385 261 AVELLRTT-----QEIEMQLEEV--SLPLLILHGEADKVTDPSVSKFLYEKASS-SDKKLKLYEDAYHSILEGEPDEMIF 332 (349)
T ss_pred HHHHHHHH-----HHHHHhcccC--CCCEEEEEeCCCCccChHHHHHHHHHcCC-CCceEEEeCCCeeecccCCChhhHH
Confidence 11111000 0112233444 99999999999999 88999999998865 4589999999999999999987
Q ss_pred -HHHHHHHHhhhc
Q psy17711 229 -FNKMVNDTCTLS 240 (335)
Q Consensus 229 -~~~~I~~fl~~~ 240 (335)
+.+.|.+||+..
T Consensus 333 ~v~~~i~~wL~~~ 345 (349)
T PLN02385 333 QVLDDIISWLDSH 345 (349)
T ss_pred HHHHHHHHHHHHh
Confidence 777788888754
No 24
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.84 E-value=9.1e-20 Score=153.97 Aligned_cols=202 Identities=15% Similarity=0.175 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCc-hhceeeEecCCCCCCCCCCccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD-RVKHLILADPWGFPQKSIDPQK 79 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~-~v~~lvli~~~~~~~~~~~~~~ 79 (335)
||.|+.+.. .+++++++|+.+++++++.++++++||||||.+++.+|.++|+ +|++++++++........ .
T Consensus 38 ~G~S~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~--~- 109 (242)
T PRK11126 38 HGGSAAISV-----DGFADVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAE--E- 109 (242)
T ss_pred CCCCCCccc-----cCHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHH--H-
Confidence 688876541 2568999999999999999999999999999999999999976 499999988653211110 0
Q ss_pred ccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhh
Q psy17711 80 ASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTE 159 (335)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
....+... ......+..... ...+..... ......+.... ...+....... .. ........
T Consensus 110 --~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~--~~-~~~~~~~~ 170 (242)
T PRK11126 110 --RQARWQND-RQWAQRFRQEPL-------EQVLADWYQ----QPVFASLNAEQ--RQQLVAKRSNN--NG-AAVAAMLE 170 (242)
T ss_pred --HHHHHhhh-HHHHHHhccCcH-------HHHHHHHHh----cchhhccCccH--HHHHHHhcccC--CH-HHHHHHHH
Confidence 00001000 000000000000 000000000 00001111111 12222111100 01 11111111
Q ss_pred ccCC-ccchhhhhhhhhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 160 GLGY-AKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 160 ~~~~-~~~~~~~~l~~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
.... ......+.+.++ +||+++++|++|.... .+.+. .+ +++++++++||++++|+|+++++.|..|+.
T Consensus 171 ~~~~~~~~~~~~~l~~i--~~P~lii~G~~D~~~~----~~~~~-~~---~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 240 (242)
T PRK11126 171 ATSLAKQPDLRPALQAL--TFPFYYLCGERDSKFQ----ALAQQ-LA---LPLHVIPNAGHNAHRENPAAFAASLAQILR 240 (242)
T ss_pred hcCcccCCcHHHHhhcc--CCCeEEEEeCCcchHH----HHHHH-hc---CeEEEeCCCCCchhhhChHHHHHHHHHHHh
Confidence 1111 111223445555 9999999999997521 22332 25 899999999999999999999999999997
Q ss_pred h
Q psy17711 239 L 239 (335)
Q Consensus 239 ~ 239 (335)
.
T Consensus 241 ~ 241 (242)
T PRK11126 241 L 241 (242)
T ss_pred h
Confidence 5
No 25
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.83 E-value=1.5e-19 Score=160.92 Aligned_cols=212 Identities=12% Similarity=0.208 Sum_probs=118.8
Q ss_pred hccHHHHHHHHHHHHHHhCCCc-EEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhh
Q psy17711 14 ETVERQLVTSIEEWRKELKLQE-MILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGN 92 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~lg~~~-~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (335)
.++++++++|+..+++++++++ ++++||||||++++.+|.++|++|+++|++++........ ..+......
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~--------~~~~~~~~~ 177 (351)
T TIGR01392 106 LITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWC--------IAFNEVQRQ 177 (351)
T ss_pred CCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHH--------HHHHHHHHH
Confidence 4788999999999999999999 9999999999999999999999999999999854322110 001111100
Q ss_pred hcccCCCCCcccccC---C-ch---hhHHhh----hCCCcccccCCCCccc---------hhHHHHHHH----Hhhhc-C
Q psy17711 93 LYKNFNPLWPVRFVG---P-LG---QWVVEK----MRPDLPKKFTPVLKED---------SSAITEYIF----QCNVQ-A 147 (335)
Q Consensus 93 ~~~~~~~~~~~~~~~---~-~~---~~~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~----~~~~~-~ 147 (335)
............... + .. ...... ....+...+....... ......+.. ..... .
T Consensus 178 ~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 257 (351)
T TIGR01392 178 AILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQGDKFVDRFD 257 (351)
T ss_pred HHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHHHHHHHhhcC
Confidence 000000000000000 0 00 000000 0000001111000000 000111111 00000 1
Q ss_pred CChHHHHHHhhhccCCc--cchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEE-----EeCCCCc
Q psy17711 148 PSGESAFHTLTEGLGYA--KRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVK-----SVTGAGH 219 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~-----~i~~~gH 219 (335)
+................ ..+..+.+..+ ++|+|+|+|++|.+ ++...+.+.+.+++ .+++ +++++||
T Consensus 258 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I--~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~---~~~~v~~~~i~~~~GH 332 (351)
T TIGR01392 258 ANSYLYLTRALDTHDLGRGRGSLTEALSRI--KAPFLVVSITSDWLFPPAESRELAKALPA---AGLRVTYVEIESPYGH 332 (351)
T ss_pred cchHHHHHHHHHhcCCcCCCCCHHHHHhhC--CCCEEEEEeCCccccCHHHHHHHHHHHhh---cCCceEEEEeCCCCCc
Confidence 11111111111111110 02234555566 99999999999998 99999999999998 5544 5578999
Q ss_pred cccccChHHHHHHHHHHhh
Q psy17711 220 HVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 220 ~~~~e~p~~~~~~I~~fl~ 238 (335)
++++|+|+++++.|.+||+
T Consensus 333 ~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 333 DAFLVETDQVEELIRGFLR 351 (351)
T ss_pred chhhcCHHHHHHHHHHHhC
Confidence 9999999999999999974
No 26
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.83 E-value=5.3e-19 Score=156.88 Aligned_cols=205 Identities=12% Similarity=0.170 Sum_probs=115.0
Q ss_pred ccHHHHHHHHHHHHHHhCCCc-EEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhh
Q psy17711 15 TVERQLVTSIEEWRKELKLQE-MILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNL 93 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~lg~~~-~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (335)
++++++++|+.++++++++++ ++|+||||||++++.+|.++|++|+++|++++....... ...+.......
T Consensus 118 ~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~~~~~--------~~~~~~~~~~~ 189 (343)
T PRK08775 118 IDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHRAHPY--------AAAWRALQRRA 189 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccccCCHH--------HHHHHHHHHHH
Confidence 456899999999999999976 479999999999999999999999999999985432110 00111100000
Q ss_pred cccCCCC----Ccccc------c-CCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHh---hhcCCChHHHHHHhhh
Q psy17711 94 YKNFNPL----WPVRF------V-GPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQC---NVQAPSGESAFHTLTE 159 (335)
Q Consensus 94 ~~~~~~~----~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 159 (335)
....... ..... . ..........+.... ......... ....++... ....... ..+..+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~l~~~~~~~~~~~~~-~~~~~~~~ 264 (343)
T PRK08775 190 VALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPP-EVINGRVRV---AAEDYLDAAGAQYVARTPV-NAYLRLSE 264 (343)
T ss_pred HHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCc-cccCCCccc---hHHHHHHHHHHHHHHhcCh-hHHHHHHH
Confidence 0000000 00000 0 000000000000000 000000000 012121110 0000000 11111111
Q ss_pred ccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHh-cCCCceEEEEeCC-CCccccccChHHHHHHHHHH
Q psy17711 160 GLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEAR-SQNSFVQVKSVTG-AGHHVYADRADVFNKMVNDT 236 (335)
Q Consensus 160 ~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~-~~~~~~~~~~i~~-~gH~~~~e~p~~~~~~I~~f 236 (335)
..... ...+..+ ++|+|+|+|++|.+ ++...+.+.+.+ ++ ++++++++ +||++++|+|++|++.|.+|
T Consensus 265 ~~~~~----~~~l~~I--~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~---a~l~~i~~~aGH~~~lE~Pe~~~~~l~~F 335 (343)
T PRK08775 265 SIDLH----RVDPEAI--RVPTVVVAVEGDRLVPLADLVELAEGLGPR---GSLRVLRSPYGHDAFLKETDRIDAILTTA 335 (343)
T ss_pred HHhhc----CCChhcC--CCCeEEEEeCCCEeeCHHHHHHHHHHcCCC---CeEEEEeCCccHHHHhcCHHHHHHHHHHH
Confidence 10000 0113334 99999999999998 878888888877 56 89999985 99999999999999999999
Q ss_pred hhhch
Q psy17711 237 CTLSD 241 (335)
Q Consensus 237 l~~~~ 241 (335)
|+...
T Consensus 336 L~~~~ 340 (343)
T PRK08775 336 LRSTG 340 (343)
T ss_pred HHhcc
Confidence 97653
No 27
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.83 E-value=1.2e-19 Score=161.63 Aligned_cols=222 Identities=13% Similarity=0.168 Sum_probs=126.1
Q ss_pred hhccHHHHHHHHHHHHHHhCCCcEE-EEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhh
Q psy17711 13 PETVERQLVTSIEEWRKELKLQEMI-LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIG 91 (335)
Q Consensus 13 ~~~~~~~~~~dl~~ll~~lg~~~~~-lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (335)
+.++++++++++..+++++|+++++ ++||||||++++.+|.++|++|+++|++++......... ......+.....
T Consensus 139 P~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~---~~~~~~~~~ai~ 215 (389)
T PRK06765 139 PVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTS---VNVLQNWAEAIR 215 (389)
T ss_pred CcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHH---HHHHHHHHHHHH
Confidence 3478999999999999999999986 999999999999999999999999999987543221100 000011111110
Q ss_pred hhcc----cC----CCCCcccccC------Cchh-hHHhhhCCCcccccCCCC-ccchhHHHHHHHHhhh---cCCChHH
Q psy17711 92 NLYK----NF----NPLWPVRFVG------PLGQ-WVVEKMRPDLPKKFTPVL-KEDSSAITEYIFQCNV---QAPSGES 152 (335)
Q Consensus 92 ~~~~----~~----~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~ 152 (335)
.-.. .+ .|..-..... .... ++...+............ ......++.|+..... .......
T Consensus 216 ~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~Dan~ 295 (389)
T PRK06765 216 LDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELVDANH 295 (389)
T ss_pred hCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhccChhh
Confidence 0000 00 0000000000 0000 000110000000000000 0001123444443321 1111111
Q ss_pred HHHHhhhccCCcc----chhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCC-CCccccccC
Q psy17711 153 AFHTLTEGLGYAK----RPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTG-AGHHVYADR 225 (335)
Q Consensus 153 ~~~~~~~~~~~~~----~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~-~gH~~~~e~ 225 (335)
.+........++. .+....+..+ ++|+|+|+|++|.+ +++..+.+.+.+++ .++++++++++ +||++++|+
T Consensus 296 ~l~l~~a~~~~d~g~~~~dl~~~L~~I--~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~ 373 (389)
T PRK06765 296 WLYLAKAVQLFDAGHGFSSLEEALSNI--EANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFD 373 (389)
T ss_pred HHHHHHHHHhcCCccccCCHHHHHhcC--CCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcC
Confidence 1111111111111 1234455555 99999999999998 98899999999873 12489999985 899999999
Q ss_pred hHHHHHHHHHHhhh
Q psy17711 226 ADVFNKMVNDTCTL 239 (335)
Q Consensus 226 p~~~~~~I~~fl~~ 239 (335)
|+++++.|.+|+++
T Consensus 374 p~~~~~~I~~FL~~ 387 (389)
T PRK06765 374 IHLFEKKIYEFLNR 387 (389)
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999999964
No 28
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.82 E-value=2.7e-19 Score=150.62 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+... .++++++++++.+++ .++++++||||||.+++.+|.++|++|+++|++++............
T Consensus 41 ~G~s~~~~-----~~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~- 110 (245)
T TIGR01738 41 HGRSRGFG-----PLSLADAAEAIAAQA----PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPE- 110 (245)
T ss_pred CccCCCCC-----CcCHHHHHHHHHHhC----CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccc-
Confidence 57765432 245577777776543 27999999999999999999999999999999987543221111000
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
.........+..... .. ... ......... .+........ ...+..............+......
T Consensus 111 ~~~~~~~~~~~~~~~---~~-~~~---~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
T TIGR01738 111 GIKPDVLTGFQQQLS---DD-YQR---TIERFLALQ-------TLGTPTARQD--ARALKQTLLARPTPNVQVLQAGLEI 174 (245)
T ss_pred cCCHHHHHHHHHHhh---hh-HHH---HHHHHHHHH-------HhcCCccchH--HHHHHHHhhccCCCCHHHHHHHHHH
Confidence 000000100000000 00 000 000000000 0000000000 1111111111111111111111111
Q ss_pred cCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHh
Q psy17711 161 LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTC 237 (335)
Q Consensus 161 ~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl 237 (335)
. ...+....+.++ ++|+++++|++|.+ +++..+.+.+.+++ +++++++++||++++|+|+++++.|.+|+
T Consensus 175 ~--~~~~~~~~l~~i--~~Pvlii~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 175 L--ATVDLRQPLQNI--SVPFLRLYGYLDGLVPAKVVPYLDKLAPH---SELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred h--hcccHHHHHhcC--CCCEEEEeecCCcccCHHHHHHHHHhCCC---CeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 1 011122334445 99999999999998 88888889999988 89999999999999999999999999985
No 29
>PRK10749 lysophospholipase L2; Provisional
Probab=99.82 E-value=5.6e-19 Score=155.84 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=120.9
Q ss_pred CCCCCCCCCC--CChhccHHHHHHHHHHHHHHh----CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 1 FGRSSRPRFS--TDPETVERQLVTSIEEWRKEL----KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 1 hG~S~~~~~~--~~~~~~~~~~~~dl~~ll~~l----g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
||.|+++... ....++++++++|+.++++++ +..+++++||||||.+++.+|.++|++|+++|+++|.......
T Consensus 92 ~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~ 171 (330)
T PRK10749 92 QGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLP 171 (330)
T ss_pred CCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCC
Confidence 7899865321 122346789999999999887 6679999999999999999999999999999999986432211
Q ss_pred CCcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCC--hHH
Q psy17711 75 IDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPS--GES 152 (335)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 152 (335)
.... ............ ...... .......+ .. .......+.........+.......... ...
T Consensus 172 ~~~~---~~~~~~~~~~~~-~~~~~~-~~~~~~~~--------~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
T PRK10749 172 LPSW---MARRILNWAEGH-PRIRDG-YAIGTGRW--------RP--LPFAINVLTHSRERYRRNLRFYADDPELRVGGP 236 (330)
T ss_pred CCcH---HHHHHHHHHHHh-cCCCCc-CCCCCCCC--------CC--CCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCC
Confidence 1100 000011110000 000000 00000000 00 0000111112221122222211111100 000
Q ss_pred HHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCC----CceEEEEeCCCCccccccCh-
Q psy17711 153 AFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQN----SFVQVKSVTGAGHHVYADRA- 226 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~----~~~~~~~i~~~gH~~~~e~p- 226 (335)
.+........ ........+..+ ++|+|+|+|++|.+ +++..+.+.+.+++. .++++++++|+||.++.|.+
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~i--~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~ 313 (330)
T PRK10749 237 TYHWVRESIL-AGEQVLAGAGDI--TTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDA 313 (330)
T ss_pred cHHHHHHHHH-HHHHHHhhccCC--CCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcH
Confidence 1111110000 000112233444 89999999999999 888888888877431 34689999999999999876
Q ss_pred --HHHHHHHHHHhhh
Q psy17711 227 --DVFNKMVNDTCTL 239 (335)
Q Consensus 227 --~~~~~~I~~fl~~ 239 (335)
+.+.+.|.+|+++
T Consensus 314 ~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 314 MRSVALNAIVDFFNR 328 (330)
T ss_pred HHHHHHHHHHHHHhh
Confidence 5577777788764
No 30
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.82 E-value=2.1e-19 Score=151.77 Aligned_cols=201 Identities=19% Similarity=0.279 Sum_probs=121.6
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+. ..++++++++|+.++++.++.++++++||||||.+++.+|..+|++|+++|++++........
T Consensus 50 ~G~s~~~~----~~~~~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~----- 120 (251)
T TIGR02427 50 HGLSDAPE----GPYSIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPE----- 120 (251)
T ss_pred CCCCCCCC----CCCCHHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchh-----
Confidence 68886543 245678999999999999999999999999999999999999999999999998754321110
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
.+.......... .. ........... +...+. .........+........ ...+......
T Consensus 121 ----~~~~~~~~~~~~----~~----~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 179 (251)
T TIGR02427 121 ----SWNARIAAVRAE----GL----AALADAVLERW---FTPGFR---EAHPARLDLYRNMLVRQP---PDGYAGCCAA 179 (251)
T ss_pred ----hHHHHHhhhhhc----cH----HHHHHHHHHHH---cccccc---cCChHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 111110000000 00 00000000000 000000 001100111111110000 0011111000
Q ss_pred cCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 161 LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 161 ~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
. ........+..+ ++|+++++|++|.+ +++..+.+.+.+++ .++++++++||++++++|+++.+.|.+|++
T Consensus 180 ~--~~~~~~~~~~~~--~~Pvlii~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 180 I--RDADFRDRLGAI--AVPTLCIAGDQDGSTPPELVREIADLVPG---ARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred H--hcccHHHHhhhc--CCCeEEEEeccCCcCChHHHHHHHHhCCC---ceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 0 111122334444 89999999999999 88888889998888 899999999999999999999999999974
No 31
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.82 E-value=8.7e-19 Score=151.24 Aligned_cols=213 Identities=19% Similarity=0.276 Sum_probs=119.5
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+... ...++++++++|+.+++++++.++++++||||||.+++.+|.++|++|+++|++++.......
T Consensus 64 ~G~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~------ 136 (288)
T TIGR01250 64 CGYSDQPDDS-DELWTIDYFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEY------ 136 (288)
T ss_pred CCCCCCCCcc-cccccHHHHHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHH------
Confidence 6788765422 113677999999999999999999999999999999999999999999999999875422110
Q ss_pred cchHHHHHHhhhhcccCCCCCcc---c--ccCCch-hhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHH
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPV---R--FVGPLG-QWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAF 154 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (335)
................. . ....+. ........ .+..................... .....+
T Consensus 137 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 203 (288)
T TIGR01250 137 ------VKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVE-VFYHHLLCRTRKWPEALKHLKSG------MNTNVY 203 (288)
T ss_pred ------HHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHH-HHHHHhhcccccchHHHHHHhhc------cCHHHH
Confidence 00000000000000000 0 000000 00000000 00000000000000000000000 000000
Q ss_pred HHhhhc------cCCccchhhhhhhhhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHH
Q psy17711 155 HTLTEG------LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADV 228 (335)
Q Consensus 155 ~~~~~~------~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~ 228 (335)
..+... ..+...+....+..+ +||+++++|++|.+++...+.+.+.+++ .++++++++||++++|+|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~i--~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~e~p~~ 278 (288)
T TIGR01250 204 NIMQGPNEFTITGNLKDWDITDKLSEI--KVPTLLTVGEFDTMTPEAAREMQELIAG---SRLVVFPDGSHMTMIEDPEV 278 (288)
T ss_pred hcccCCccccccccccccCHHHHhhcc--CCCEEEEecCCCccCHHHHHHHHHhccC---CeEEEeCCCCCCcccCCHHH
Confidence 000000 000111122334444 9999999999998866778888888888 88999999999999999999
Q ss_pred HHHHHHHHhh
Q psy17711 229 FNKMVNDTCT 238 (335)
Q Consensus 229 ~~~~I~~fl~ 238 (335)
+++.|.+|++
T Consensus 279 ~~~~i~~fl~ 288 (288)
T TIGR01250 279 YFKLLSDFIR 288 (288)
T ss_pred HHHHHHHHhC
Confidence 9999999984
No 32
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.81 E-value=2.9e-20 Score=154.48 Aligned_cols=193 Identities=23% Similarity=0.340 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+.. ...++++++++|+.+++++++.++++++|||+||.+++.++.++|++|+++|+++|......... .
T Consensus 35 ~G~s~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~---~ 109 (228)
T PF12697_consen 35 HGRSDPPPD--YSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPS---R 109 (228)
T ss_dssp STTSSSHSS--GSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHC---H
T ss_pred ccccccccc--cCCcchhhhhhhhhhcccccccccccccccccccccccccccccccccccceeeccccccccccc---c
Confidence 678876652 23567799999999999999999999999999999999999999999999999998653211000 0
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
.....+.......... . ..... ...+........ ...++.. ....+......
T Consensus 110 ~~~~~~~~~~~~~~~~---------------~-~~~~~---~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~ 161 (228)
T PF12697_consen 110 SFGPSFIRRLLAWRSR---------------S-LRRLA---SRFFYRWFDGDE--PEDLIRS-------SRRALAEYLRS 161 (228)
T ss_dssp HHHHHHHHHHHHHHHH---------------H-HHHHH---HHHHHHHHTHHH--HHHHHHH-------HHHHHHHHHHH
T ss_pred cccchhhhhhhhcccc---------------c-ccccc---cccccccccccc--ccccccc-------ccccccccccc
Confidence 0000111110000000 0 00000 000000000000 1111111 00001110000
Q ss_pred cCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHH
Q psy17711 161 LGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232 (335)
Q Consensus 161 ~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~ 232 (335)
. ....+....+..+ ++|+++++|++|.+ +.+..+.+.+..++ +++++++++||++++|+|+++++.
T Consensus 162 ~-~~~~~~~~~~~~~--~~pvl~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 162 N-LWQADLSEALPRI--KVPVLVIHGEDDPIVPPESAEELADKLPN---AELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp H-HHHHHHHHHHHGS--SSEEEEEEETTSSSSHHHHHHHHHHHSTT---EEEEEETTSSSTHHHHSHHHHHHH
T ss_pred c-ccccccccccccc--CCCeEEeecCCCCCCCHHHHHHHHHHCCC---CEEEEECCCCCccHHHCHHHHhcC
Confidence 0 0111223444555 99999999999999 88888889988888 999999999999999999999863
No 33
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.80 E-value=4.2e-18 Score=143.58 Aligned_cols=211 Identities=17% Similarity=0.194 Sum_probs=118.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHH-HHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTS-IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQK 79 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~d-l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~ 79 (335)
||.|+.+.. ...+++++++++ +..++++++.++++++||||||.+++.+|.++|++|++++++++............
T Consensus 38 ~G~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~ 115 (251)
T TIGR03695 38 HGSSQSPDE--IERYDFEEAAQDILATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAA 115 (251)
T ss_pred CCCCCCCCc--cChhhHHHHHHHHHHHHHHHcCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhh
Confidence 677876542 134566899999 88888999989999999999999999999999999999999987543221100000
Q ss_pred -ccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCC-CcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHh
Q psy17711 80 -ASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP-DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTL 157 (335)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (335)
......+...+. .... ......... ..... ...+.... ...+........+ ......+
T Consensus 116 ~~~~~~~~~~~~~----~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~ 175 (251)
T TIGR03695 116 RRQNDEQLAQRFE----QEGL-----------EAFLDDWYQQPLFAS-QKNLPPEQ--RQALRAKRLANNP--EGLAKML 175 (251)
T ss_pred hhhcchhhhhHHH----hcCc-----------cHHHHHHhcCceeee-cccCChHH--hHHHHHhcccccc--hHHHHHH
Confidence 000000000000 0000 000000000 00000 00011100 1111111111111 1111111
Q ss_pred hhccCCccchhhhhhhhhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHh
Q psy17711 158 TEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTC 237 (335)
Q Consensus 158 ~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl 237 (335)
..............+..+ ++|+++++|++|...+...+.+.+..++ .++++++++||++++|+|+++++.|.+|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~--~~P~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 176 RATGLGKQPSLWPKLQAL--TIPVLYLCGEKDEKFVQIAKEMQKLLPN---LTLVIIANAGHNIHLENPEAFAKILLAFL 250 (251)
T ss_pred HHhhhhcccchHHHhhCC--CCceEEEeeCcchHHHHHHHHHHhcCCC---CcEEEEcCCCCCcCccChHHHHHHHHHHh
Confidence 111000111122333444 9999999999997733566777777777 89999999999999999999999999998
Q ss_pred h
Q psy17711 238 T 238 (335)
Q Consensus 238 ~ 238 (335)
+
T Consensus 251 ~ 251 (251)
T TIGR03695 251 E 251 (251)
T ss_pred C
Confidence 4
No 34
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.79 E-value=8.7e-20 Score=152.52 Aligned_cols=210 Identities=22% Similarity=0.337 Sum_probs=117.6
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
+|.|++........++.+++++++..+++++|.++++++||||||.+++.+|+.+|++|+++|+++++.... .....
T Consensus 11 ~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~~~~~---~~~~~ 87 (230)
T PF00561_consen 11 FGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPPPDLP---DGLWN 87 (230)
T ss_dssp STTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSHHH---HHHHH
T ss_pred CCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeeeccch---hhhhH
Confidence 577874001123456779999999999999999999999999999999999999999999999999853000 00000
Q ss_pred cchHH--HHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCccccc--CCCCccc--hhHHHHHHHHhhhcCCChHHHH
Q psy17711 81 SKIPL--WARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKF--TPVLKED--SSAITEYIFQCNVQAPSGESAF 154 (335)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 154 (335)
..... +......... ............... ...+... ............... ......
T Consensus 88 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 151 (230)
T PF00561_consen 88 RIWPRGNLQGQLLDNFF---------------NFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARF-AETDAF 151 (230)
T ss_dssp HCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHhhhhhhhhHHHhhh---------------ccccccchhhhhhhhhheeeccCccccchhhccchhhhhHH-HHHHHH
Confidence 00000 0000000000 000000000000000 0000000 000000000000000 000011
Q ss_pred HHhhh--ccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHH
Q psy17711 155 HTLTE--GLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231 (335)
Q Consensus 155 ~~~~~--~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~ 231 (335)
..... ...+...+....+..+ ++|+++++|++|.+ +++....+.+.+|+ .++++++++||+.+++.|+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~i--~~p~l~i~~~~D~~~p~~~~~~~~~~~~~---~~~~~~~~~GH~~~~~~~~~~~~ 226 (230)
T PF00561_consen 152 DNMFWNALGYFSVWDPSPALSNI--KVPTLIIWGEDDPLVPPESSEQLAKLIPN---SQLVLIEGSGHFAFLEGPDEFNE 226 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT--TSEEEEEEETTCSSSHHHHHHHHHHHSTT---EEEEEETTCCSTHHHHSHHHHHH
T ss_pred hhhcccccccccccccccccccc--CCCeEEEEeCCCCCCCHHHHHHHHHhcCC---CEEEECCCCChHHHhcCHHhhhh
Confidence 11000 0001111122333344 99999999999999 99999999999999 99999999999999999999999
Q ss_pred HHH
Q psy17711 232 MVN 234 (335)
Q Consensus 232 ~I~ 234 (335)
.|.
T Consensus 227 ~i~ 229 (230)
T PF00561_consen 227 III 229 (230)
T ss_dssp HHH
T ss_pred hhc
Confidence 875
No 35
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.79 E-value=3e-18 Score=151.50 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCC------CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL------QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~------~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
||.|+.+. ....+++++++|+.++++.++. .+++|+||||||.+++.++..+|++|+++|+++|.......
T Consensus 98 hG~S~~~~---~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 174 (330)
T PLN02298 98 HGRSEGLR---AYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDK 174 (330)
T ss_pred CCCCCCcc---ccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcc
Confidence 78887543 2234568899999999998753 37999999999999999999999999999999986432211
Q ss_pred CCcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhh----hcCCCh
Q psy17711 75 IDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCN----VQAPSG 150 (335)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 150 (335)
... . . +............+....... . ....... ... ......... ...+ .
T Consensus 175 ~~~--~--~--~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~-~~~--~~~~~~~~~~~~~~~~~-~ 229 (330)
T PLN02298 175 IRP--P--W--PIPQILTFVARFLPTLAIVPT------------A---DLLEKSV-KVP--AKKIIAKRNPMRYNGKP-R 229 (330)
T ss_pred cCC--c--h--HHHHHHHHHHHHCCCCccccC------------C---Ccccccc-cCH--HHHHHHHhCccccCCCc-c
Confidence 000 0 0 000000001111110000000 0 0000000 000 000000000 0000 0
Q ss_pred HHHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHH-
Q psy17711 151 ESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADV- 228 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~- 228 (335)
...+..+.... ......+..+ ++|+|+++|++|.+ +++..+.+.+.++. ++.++++++++||.++.++|+.
T Consensus 230 ~~~~~~~~~~~----~~~~~~l~~i--~~PvLii~G~~D~ivp~~~~~~l~~~i~~-~~~~l~~~~~a~H~~~~e~pd~~ 302 (330)
T PLN02298 230 LGTVVELLRVT----DYLGKKLKDV--SIPFIVLHGSADVVTDPDVSRALYEEAKS-EDKTIKIYDGMMHSLLFGEPDEN 302 (330)
T ss_pred HHHHHHHHHHH----HHHHHhhhhc--CCCEEEEecCCCCCCCHHHHHHHHHHhcc-CCceEEEcCCcEeeeecCCCHHH
Confidence 00011111100 0112334444 99999999999999 99999999888864 4489999999999999988864
Q ss_pred ---HHHHHHHHhhhc
Q psy17711 229 ---FNKMVNDTCTLS 240 (335)
Q Consensus 229 ---~~~~I~~fl~~~ 240 (335)
+.+.|.+|+++.
T Consensus 303 ~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 303 IEIVRRDILSWLNER 317 (330)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566677777665
No 36
>PHA02857 monoglyceride lipase; Provisional
Probab=99.78 E-value=6.4e-18 Score=145.62 Aligned_cols=201 Identities=16% Similarity=0.164 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHh----CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKEL----KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSID 76 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~l----g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~ 76 (335)
||.|+.... + ..++.++++|+...++.+ +..+++|+||||||.+|+.+|.++|++|+++|+++|........
T Consensus 63 ~G~S~~~~~--~-~~~~~~~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~- 138 (276)
T PHA02857 63 HGRSNGEKM--M-IDDFGVYVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP- 138 (276)
T ss_pred CCCCCCccC--C-cCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc-
Confidence 788875431 1 224456667776666543 44689999999999999999999999999999999864321100
Q ss_pred cccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcC-CChHHHHH
Q psy17711 77 PQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQA-PSGESAFH 155 (335)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (335)
........ ......+..... .. ....+..+......+........ ........
T Consensus 139 ------~~~~~~~~--~~~~~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (276)
T PHA02857 139 ------RLNLLAAK--LMGIFYPNKIVG---KL---------------CPESVSRDMDEVYKYQYDPLVNHEKIKAGFAS 192 (276)
T ss_pred ------HHHHHHHH--HHHHhCCCCccC---CC---------------CHhhccCCHHHHHHHhcCCCccCCCccHHHHH
Confidence 00000000 000000000000 00 00001111100111111100000 00000111
Q ss_pred HhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccCh---HHHHH
Q psy17711 156 TLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRA---DVFNK 231 (335)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p---~~~~~ 231 (335)
..... .......+..+ ++|+|+++|++|.+ +++..+.+.+.++. ++++++++++||.++.|.+ +++.+
T Consensus 193 ~~~~~----~~~~~~~l~~i--~~Pvliv~G~~D~i~~~~~~~~l~~~~~~--~~~~~~~~~~gH~~~~e~~~~~~~~~~ 264 (276)
T PHA02857 193 QVLKA----TNKVRKIIPKI--KTPILILQGTNNEISDVSGAYYFMQHANC--NREIKIYEGAKHHLHKETDEVKKSVMK 264 (276)
T ss_pred HHHHH----HHHHHHhcccC--CCCEEEEecCCCCcCChHHHHHHHHHccC--CceEEEeCCCcccccCCchhHHHHHHH
Confidence 11100 01112334444 99999999999999 99999999888743 2899999999999999976 45677
Q ss_pred HHHHHhhh
Q psy17711 232 MVNDTCTL 239 (335)
Q Consensus 232 ~I~~fl~~ 239 (335)
.+.+||+.
T Consensus 265 ~~~~~l~~ 272 (276)
T PHA02857 265 EIETWIFN 272 (276)
T ss_pred HHHHHHHH
Confidence 77777765
No 37
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.76 E-value=1.3e-17 Score=142.95 Aligned_cols=213 Identities=12% Similarity=0.059 Sum_probs=114.7
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhC-CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELK-LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQK 79 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg-~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~ 79 (335)
||.|...+ ...++++++++++.+++++++ .++++||||||||.++..++.++|++|+++|++++.........
T Consensus 56 ~G~s~~~~---~~~~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~--- 129 (273)
T PLN02211 56 AGIDQSDA---DSVTTFDEYNKPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQT--- 129 (273)
T ss_pred CCCCCCCc---ccCCCHHHHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCH---
Confidence 56654332 113577899999999999985 58999999999999999999999999999999987533211100
Q ss_pred ccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhh
Q psy17711 80 ASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTE 159 (335)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
...+..................................+...+ .+...+.....+........+ ... +.
T Consensus 130 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~---~~- 198 (273)
T PLN02211 130 ---DEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIKKEFRRKI--LYQMSPQEDSTLAAMLLRPGP--ILA---LR- 198 (273)
T ss_pred ---HHHHhccccchhhhccceeeeeccCCCCCCceeeeCHHHHHHH--HhcCCCHHHHHHHHHhcCCcC--ccc---cc-
Confidence 0001100000000000000000000000000000000000000 000000001111111100000 000 00
Q ss_pred ccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 160 GLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 160 ~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
.....+..... . ++|+++|.|++|.+ |++..+.+.+.++. .++++++ +||.+++++|+++++.|.++..
T Consensus 199 --~~~~~~~~~~~--~--~vP~l~I~g~~D~~ip~~~~~~m~~~~~~---~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 199 --SARFEEETGDI--D--KVPRVYIKTLHDHVVKPEQQEAMIKRWPP---SQVYELE-SDHSPFFSTPFLLFGLLIKAAA 268 (273)
T ss_pred --ccccccccccc--C--ccceEEEEeCCCCCCCHHHHHHHHHhCCc---cEEEEEC-CCCCccccCHHHHHHHHHHHHH
Confidence 00000001111 1 78999999999999 99999999999988 7899997 7999999999999999998865
Q ss_pred hc
Q psy17711 239 LS 240 (335)
Q Consensus 239 ~~ 240 (335)
..
T Consensus 269 ~~ 270 (273)
T PLN02211 269 SV 270 (273)
T ss_pred Hh
Confidence 43
No 38
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.76 E-value=7.6e-17 Score=138.99 Aligned_cols=213 Identities=21% Similarity=0.249 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCC----CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL----QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSID 76 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~----~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~ 76 (335)
||+|.+.. .....+++++.+|+.++++.... .+++++||||||.|++.++.+++.+|+++||.+|.......
T Consensus 72 hG~S~r~~--rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~-- 147 (298)
T COG2267 72 HGRSPRGQ--RGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGA-- 147 (298)
T ss_pred CCCCCCCC--cCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChh--
Confidence 79997311 12333468999999999988753 68999999999999999999999999999999997544320
Q ss_pred cccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCC-ChHHHHH
Q psy17711 77 PQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAP-SGESAFH 155 (335)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (335)
..................+..... . .. .........+++....+.|..+...... .....+.
T Consensus 148 ----~~~~~~~~~~~~~~~~~~p~~~~~-----------~-~~-~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~ 210 (298)
T COG2267 148 ----ILRLILARLALKLLGRIRPKLPVD-----------S-NL-LEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVD 210 (298)
T ss_pred ----HHHHHHHHHhcccccccccccccC-----------c-cc-ccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHH
Confidence 001111111111122222111110 0 00 1122334455566556666655532222 1222222
Q ss_pred HhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-C-CchhHHHHHHhcCCCceEEEEeCCCCcccccc-Ch--HHHH
Q psy17711 156 TLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-D-NSSGDKIKEARSQNSFVQVKSVTGAGHHVYAD-RA--DVFN 230 (335)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~-~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e-~p--~~~~ 230 (335)
....... .........+ ++|+|+++|++|.+ + .+....+.+.... +++++++++|+.|.++.| .. +++.
T Consensus 211 ~~~~a~~---~~~~~~~~~~--~~PvLll~g~~D~vv~~~~~~~~~~~~~~~-~~~~~~~~~g~~He~~~E~~~~r~~~~ 284 (298)
T COG2267 211 LALLAGR---VPALRDAPAI--ALPVLLLQGGDDRVVDNVEGLARFFERAGS-PDKELKVIPGAYHELLNEPDRAREEVL 284 (298)
T ss_pred HHHHhhc---ccchhccccc--cCCEEEEecCCCccccCcHHHHHHHHhcCC-CCceEEecCCcchhhhcCcchHHHHHH
Confidence 2222111 1112222333 89999999999999 7 5777777777766 668999999999999998 44 6677
Q ss_pred HHHHHHhhhc
Q psy17711 231 KMVNDTCTLS 240 (335)
Q Consensus 231 ~~I~~fl~~~ 240 (335)
+.+.+|++..
T Consensus 285 ~~~~~~l~~~ 294 (298)
T COG2267 285 KDILAWLAEA 294 (298)
T ss_pred HHHHHHHHhh
Confidence 7777777654
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.76 E-value=2.4e-17 Score=170.35 Aligned_cols=220 Identities=11% Similarity=0.154 Sum_probs=125.5
Q ss_pred CCCCCCCCC----CCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCC
Q psy17711 1 FGRSSRPRF----STDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSID 76 (335)
Q Consensus 1 hG~S~~~~~----~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~ 76 (335)
||.|+.+.. .....++++++++++..++++++.++++|+||||||.+++.+|.++|++|+++|++++.........
T Consensus 1408 ~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~ 1487 (1655)
T PLN02980 1408 HGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVA 1487 (1655)
T ss_pred CCCCCCccccccccccccCCHHHHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHH
Confidence 788875432 1123567899999999999999999999999999999999999999999999999987432111000
Q ss_pred cccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHH
Q psy17711 77 PQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHT 156 (335)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (335)
........ ............ ......+. ............ .....+...... .. ...+..
T Consensus 1488 ----~~~~~~~~--~~~~~~l~~~g~--------~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~ 1547 (1655)
T PLN02980 1488 ----RKIRSAKD--DSRARMLIDHGL--------EIFLENWY---SGELWKSLRNHP-HFNKIVASRLLH-KD-VPSLAK 1547 (1655)
T ss_pred ----HHHHhhhh--hHHHHHHHhhhH--------HHHHHHhc---cHHHhhhhccCH-HHHHHHHHHHhc-CC-HHHHHH
Confidence 00000000 000000000000 00000000 000000000000 011221111111 11 111111
Q ss_pred hhhccC-CccchhhhhhhhhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCC---------CceEEEEeCCCCccccccCh
Q psy17711 157 LTEGLG-YAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQN---------SFVQVKSVTGAGHHVYADRA 226 (335)
Q Consensus 157 ~~~~~~-~~~~~~~~~l~~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~---------~~~~~~~i~~~gH~~~~e~p 226 (335)
...... ....+....+..+ ++|+|+|+|++|.+.+...+.+.+.+++. +.+++++++++||++++|+|
T Consensus 1548 ~l~~~~~~~~~dl~~~L~~I--~~PtLlI~Ge~D~~~~~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~P 1625 (1655)
T PLN02980 1548 LLSDLSIGRQPSLWEDLKQC--DTPLLLVVGEKDVKFKQIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENP 1625 (1655)
T ss_pred HHHHhhhcccchHHHHHhhC--CCCEEEEEECCCCccHHHHHHHHHHccccccccccccccceEEEEECCCCCchHHHCH
Confidence 111111 0111223445555 99999999999988446667777777651 12589999999999999999
Q ss_pred HHHHHHHHHHhhhchh
Q psy17711 227 DVFNKMVNDTCTLSDE 242 (335)
Q Consensus 227 ~~~~~~I~~fl~~~~~ 242 (335)
+++++.|.+||.+...
T Consensus 1626 e~f~~~I~~FL~~~~~ 1641 (1655)
T PLN02980 1626 LPVIRALRKFLTRLHN 1641 (1655)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999998654
No 40
>KOG1455|consensus
Probab=99.75 E-value=7.8e-18 Score=138.91 Aligned_cols=207 Identities=19% Similarity=0.209 Sum_probs=120.7
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCC------CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL------QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~------~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
||+|+... .+.-+++.+++|+....+.... .+.+++||||||.|++.++.++|+..+|+|+++|.......
T Consensus 93 hG~SdGl~---~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~ 169 (313)
T KOG1455|consen 93 HGRSDGLH---AYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISED 169 (313)
T ss_pred CCcCCCCc---ccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCc
Confidence 89999654 2334557889999888875422 47999999999999999999999999999999996543322
Q ss_pred CCcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhh--cCCChHH
Q psy17711 75 IDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNV--QAPSGES 152 (335)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 152 (335)
..+ ......+......+.|.+..- ..+........++............ ..+....
T Consensus 170 ~kp------~p~v~~~l~~l~~liP~wk~v----------------p~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T 227 (313)
T KOG1455|consen 170 TKP------HPPVISILTLLSKLIPTWKIV----------------PTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKT 227 (313)
T ss_pred cCC------CcHHHHHHHHHHHhCCceeec----------------CCccccccccCCHHHHHHhhcCCceecCCccHHH
Confidence 111 011111111222222211100 0000111111222111111111110 0111111
Q ss_pred HHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccc-cChHHHH
Q psy17711 153 AFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYA-DRADVFN 230 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~ 230 (335)
.+.-+... .+..+++.++ ++|.+++||+.|.+ ++..++.+.+..+. .+.+++.+||.-|.++. |-++.+.
T Consensus 228 ~~ElLr~~-----~~le~~l~~v--tvPflilHG~dD~VTDp~~Sk~Lye~A~S-~DKTlKlYpGm~H~Ll~gE~~en~e 299 (313)
T KOG1455|consen 228 AYELLRVT-----ADLEKNLNEV--TVPFLILHGTDDKVTDPKVSKELYEKASS-SDKTLKLYPGMWHSLLSGEPDENVE 299 (313)
T ss_pred HHHHHHHH-----HHHHHhcccc--cccEEEEecCCCcccCcHHHHHHHHhccC-CCCceeccccHHHHhhcCCCchhHH
Confidence 11111111 1233445555 99999999999999 99999999999998 88999999999999997 5444444
Q ss_pred HHHHHHhhhc
Q psy17711 231 KMVNDTCTLS 240 (335)
Q Consensus 231 ~~I~~fl~~~ 240 (335)
....+.++|+
T Consensus 300 ~Vf~DI~~Wl 309 (313)
T KOG1455|consen 300 IVFGDIISWL 309 (313)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 41
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.75 E-value=4.1e-17 Score=146.61 Aligned_cols=199 Identities=20% Similarity=0.277 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.... ..+++++++++..+++.++.++++++||||||.+++.+|..+|++++++|++++........
T Consensus 168 ~G~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~----- 238 (371)
T PRK14875 168 HGASSKAVG----AGSLDELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEIN----- 238 (371)
T ss_pred CCCCCCCCC----CCCHHHHHHHHHHHHHhcCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccc-----
Confidence 577754432 34568999999999999999999999999999999999999999999999998754322110
Q ss_pred cchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhc
Q psy17711 81 SKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEG 160 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
..+...+.... ... .+...+..... .. ..+. ........... ........+..+...
T Consensus 239 ---~~~~~~~~~~~---~~~-------~~~~~~~~~~~----~~--~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~ 295 (371)
T PRK14875 239 ---GDYIDGFVAAE---SRR-------ELKPVLELLFA----DP--ALVT--RQMVEDLLKYK--RLDGVDDALRALADA 295 (371)
T ss_pred ---hhHHHHhhccc---chh-------HHHHHHHHHhc----Ch--hhCC--HHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 01111100000 000 00000000000 00 0000 00011111100 000001111111110
Q ss_pred c-C--CccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHH
Q psy17711 161 L-G--YAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDT 236 (335)
Q Consensus 161 ~-~--~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~f 236 (335)
. . ....+....+..+ +||+++++|++|.+ ++...+.+ .++ .++.+++++||++++++|+++++.|.+|
T Consensus 296 ~~~~~~~~~~~~~~l~~i--~~Pvlii~g~~D~~vp~~~~~~l---~~~---~~~~~~~~~gH~~~~e~p~~~~~~i~~f 367 (371)
T PRK14875 296 LFAGGRQRVDLRDRLASL--AIPVLVIWGEQDRIIPAAHAQGL---PDG---VAVHVLPGAGHMPQMEAAADVNRLLAEF 367 (371)
T ss_pred hccCcccchhHHHHHhcC--CCCEEEEEECCCCccCHHHHhhc---cCC---CeEEEeCCCCCChhhhCHHHHHHHHHHH
Confidence 0 0 0011222334444 99999999999988 76654432 234 8899999999999999999999999999
Q ss_pred hhh
Q psy17711 237 CTL 239 (335)
Q Consensus 237 l~~ 239 (335)
++.
T Consensus 368 l~~ 370 (371)
T PRK14875 368 LGK 370 (371)
T ss_pred hcc
Confidence 864
No 42
>KOG2382|consensus
Probab=99.75 E-value=5.4e-17 Score=136.16 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhC----CCcEEEEEechhH-HHHHHHHHhCCchhceeeEecCCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELK----LQEMILLGHSFGG-YLAFAYAIQYPDRVKHLILADPWGFPQKSI 75 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg----~~~~~lvGhS~Gg-~ia~~~a~~~P~~v~~lvli~~~~~~~~~~ 75 (335)
||.|.+.. .++...+++|+..+++..+ ..+++++|||||| .+++..+...|+.+..+|+++-.+......
T Consensus 91 HG~Sp~~~-----~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~ 165 (315)
T KOG2382|consen 91 HGSSPKIT-----VHNYEAMAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRS 165 (315)
T ss_pred CCCCcccc-----ccCHHHHHHHHHHHHHHcccccccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcc
Confidence 78887765 2334899999999999885 5799999999999 888888889999999999998644211111
Q ss_pred CcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCC-------
Q psy17711 76 DPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAP------- 148 (335)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 148 (335)
. ......+..+........ ..+........ +.....+.. +.+++.......+
T Consensus 166 ~----~e~~e~i~~m~~~d~~~~---~~~~rke~~~~------------l~~~~~d~~--~~~fi~~nl~~~~~~~s~~w 224 (315)
T KOG2382|consen 166 Y----GEYRELIKAMIQLDLSIG---VSRGRKEALKS------------LIEVGFDNL--VRQFILTNLKKSPSDGSFLW 224 (315)
T ss_pred c----chHHHHHHHHHhcccccc---ccccHHHHHHH------------HHHHhcchH--HHHHHHHhcCcCCCCCceEE
Confidence 1 011111111111111000 00000000000 000111111 3333333322100
Q ss_pred -ChHHHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccCh
Q psy17711 149 -SGESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRA 226 (335)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p 226 (335)
.+......+...+. .......+.+.+...||++++|.++.. +.+....+.+.+|+ +++++++++|||+|.|+|
T Consensus 225 ~~nl~~i~~~~~~~~--~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~---~e~~~ld~aGHwVh~E~P 299 (315)
T KOG2382|consen 225 RVNLDSIASLLDEYE--ILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPN---VEVHELDEAGHWVHLEKP 299 (315)
T ss_pred EeCHHHHHHHHHHHH--hhcccccccccccccceeEEecCCCCCcChhHHHHHHHhccc---hheeecccCCceeecCCH
Confidence 11111111111100 000111111122389999999999988 88889999999999 999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q psy17711 227 DVFNKMVNDTCTLS 240 (335)
Q Consensus 227 ~~~~~~I~~fl~~~ 240 (335)
+++.+.|.+|+.+.
T Consensus 300 ~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 300 EEFIESISEFLEEP 313 (315)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998764
No 43
>KOG2984|consensus
Probab=99.73 E-value=7.9e-18 Score=129.92 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcc--
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQ-- 78 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~-- 78 (335)
||.|.+|.......+ +..-+++...+++.|..+++.++|||=||..|+..|+++++.|.++|+.++...........
T Consensus 82 YG~SrPP~Rkf~~~f-f~~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~k 160 (277)
T KOG2984|consen 82 YGTSRPPERKFEVQF-FMKDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFK 160 (277)
T ss_pred CCCCCCCcccchHHH-HHHhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHh
Confidence 688877664444333 34557788899999999999999999999999999999999999999998765433322110
Q ss_pred cccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhh
Q psy17711 79 KASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLT 158 (335)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (335)
.......|..+.. +.+...+..+. +......+ ......+..+.
T Consensus 161 giRdv~kWs~r~R-------------------------------~P~e~~Yg~e~--f~~~wa~w----vD~v~qf~~~~ 203 (277)
T KOG2984|consen 161 GIRDVNKWSARGR-------------------------------QPYEDHYGPET--FRTQWAAW----VDVVDQFHSFC 203 (277)
T ss_pred chHHHhhhhhhhc-------------------------------chHHHhcCHHH--HHHHHHHH----HHHHHHHhhcC
Confidence 0111122222211 11111111110 11100000 00011111111
Q ss_pred hccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHh
Q psy17711 159 EGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTC 237 (335)
Q Consensus 159 ~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl 237 (335)
.+ ++ .+-. ++++ +||+||+||+.|++ +..++..+....+. +++.++|.++|.+++..+++|+..+.+|+
T Consensus 204 dG-~f-Cr~~---lp~v--kcPtli~hG~kDp~~~~~hv~fi~~~~~~---a~~~~~peGkHn~hLrya~eFnklv~dFl 273 (277)
T KOG2984|consen 204 DG-RF-CRLV---LPQV--KCPTLIMHGGKDPFCGDPHVCFIPVLKSL---AKVEIHPEGKHNFHLRYAKEFNKLVLDFL 273 (277)
T ss_pred CC-ch-Hhhh---cccc--cCCeeEeeCCcCCCCCCCCccchhhhccc---ceEEEccCCCcceeeechHHHHHHHHHHH
Confidence 10 01 1222 3334 99999999999999 88889999999988 99999999999999999999999999999
Q ss_pred hhc
Q psy17711 238 TLS 240 (335)
Q Consensus 238 ~~~ 240 (335)
+..
T Consensus 274 ~~~ 276 (277)
T KOG2984|consen 274 KST 276 (277)
T ss_pred hcc
Confidence 753
No 44
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.73 E-value=8.6e-17 Score=140.55 Aligned_cols=68 Identities=31% Similarity=0.489 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
||.|+.+... ..++.+++++|+..+++++++++++++||||||.+++.++.++|++|+++|++++...
T Consensus 64 ~G~S~~~~~~--~~~~~~~~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~ 131 (306)
T TIGR01249 64 CGKSTPHACL--EENTTWDLVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLL 131 (306)
T ss_pred CCCCCCCCCc--ccCCHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccC
Confidence 7888855421 2356689999999999999999999999999999999999999999999999987543
No 45
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.73 E-value=2.3e-16 Score=141.22 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=116.7
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCC----CcEEEEEechhHHHHHHHHHhCCc---hhceeeEecCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL----QEMILLGHSFGGYLAFAYAIQYPD---RVKHLILADPWGFPQK 73 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~----~~~~lvGhS~Gg~ia~~~a~~~P~---~v~~lvli~~~~~~~~ 73 (335)
||.|+... ....+++.+++|+.++++.++. .+++++||||||.+++.++. +|+ +|+++|+.+|......
T Consensus 174 hG~S~~~~---~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~ 249 (395)
T PLN02652 174 HGGSDGLH---GYVPSLDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKP 249 (395)
T ss_pred CCCCCCCC---CCCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECccccccc
Confidence 78887653 1233557888999999888753 37999999999999998764 664 8999999988643211
Q ss_pred CCCcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcC-CChHH
Q psy17711 74 SIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQA-PSGES 152 (335)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 152 (335)
. . .+......+.....+........ . ....+..+............... .....
T Consensus 250 ~-~--------~~~~~~~~l~~~~~p~~~~~~~~---------------~-~~~~~s~~~~~~~~~~~dp~~~~g~i~~~ 304 (395)
T PLN02652 250 A-H--------PIVGAVAPIFSLVAPRFQFKGAN---------------K-RGIPVSRDPAALLAKYSDPLVYTGPIRVR 304 (395)
T ss_pred c-h--------HHHHHHHHHHHHhCCCCcccCcc---------------c-ccCCcCCCHHHHHHHhcCCCcccCCchHH
Confidence 1 0 01111111111111110000000 0 00001111110111110000000 00000
Q ss_pred HHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCcccccc-ChHHHH
Q psy17711 153 AFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYAD-RADVFN 230 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e-~p~~~~ 230 (335)
......... ......+..+ ++|+|+++|++|.+ +++..+.+.+.+++ .+.+++++++++|.++.| .++++.
T Consensus 305 ~~~~~~~~~----~~l~~~L~~I--~vPvLIi~G~~D~vvp~~~a~~l~~~~~~-~~k~l~~~~ga~H~l~~e~~~e~v~ 377 (395)
T PLN02652 305 TGHEILRIS----SYLTRNFKSV--TVPFMVLHGTADRVTDPLASQDLYNEAAS-RHKDIKLYDGFLHDLLFEPEREEVG 377 (395)
T ss_pred HHHHHHHHH----HHHHhhcccC--CCCEEEEEeCCCCCCCHHHHHHHHHhcCC-CCceEEEECCCeEEeccCCCHHHHH
Confidence 000000000 0112233444 99999999999999 88999999888776 557899999999999887 799999
Q ss_pred HHHHHHhhhch
Q psy17711 231 KMVNDTCTLSD 241 (335)
Q Consensus 231 ~~I~~fl~~~~ 241 (335)
+.|.+||+...
T Consensus 378 ~~I~~FL~~~~ 388 (395)
T PLN02652 378 RDIIDWMEKRL 388 (395)
T ss_pred HHHHHHHHHHh
Confidence 99999998653
No 46
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.70 E-value=5.6e-16 Score=136.50 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=117.9
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhC------------------------CCcEEEEEechhHHHHHHHHHhCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELK------------------------LQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg------------------------~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
||+|+..........+++++++|+..+++... ..|++|+||||||.+++.++..++
T Consensus 85 HG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~ 164 (332)
T TIGR01607 85 HGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLG 164 (332)
T ss_pred cCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhc
Confidence 78888653222222467899999999987642 247999999999999999998765
Q ss_pred c--------hhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCC
Q psy17711 57 D--------RVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPV 128 (335)
Q Consensus 57 ~--------~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (335)
+ .++|+|+++|+......... .......+...+........+...... ...
T Consensus 165 ~~~~~~~~~~i~g~i~~s~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~p~~~~~~--------------------~~~ 223 (332)
T TIGR01607 165 KSNENNDKLNIKGCISLSGMISIKSVGSD-DSFKFKYFYLPVMNFMSRVFPTFRISK--------------------KIR 223 (332)
T ss_pred cccccccccccceEEEeccceEEecccCC-CcchhhhhHHHHHHHHHHHCCcccccC--------------------ccc
Confidence 3 58999999886432111000 000011111111111111111110000 001
Q ss_pred CccchhHHHHHHHHhhhcC-CChHHHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCC
Q psy17711 129 LKEDSSAITEYIFQCNVQA-PSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQN 206 (335)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~ 206 (335)
+..+....+.+..+..... ......+..+...... ....+..++.++|+|+++|++|.+ +++..+.+.+....
T Consensus 224 ~~~~~~~~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~----~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~- 298 (332)
T TIGR01607 224 YEKSPYVNDIIKFDKFRYDGGITFNLASELIKATDT----LDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI- 298 (332)
T ss_pred cccChhhhhHHhcCccccCCcccHHHHHHHHHHHHH----HHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC-
Confidence 1111111122211111110 0111122222211110 111223333379999999999998 88888888877654
Q ss_pred CceEEEEeCCCCccccccC-hHHHHHHHHHHhh
Q psy17711 207 SFVQVKSVTGAGHHVYADR-ADVFNKMVNDTCT 238 (335)
Q Consensus 207 ~~~~~~~i~~~gH~~~~e~-p~~~~~~I~~fl~ 238 (335)
++.+++++++++|.++.|. ++++.+.|.+||+
T Consensus 299 ~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 299 SNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 4589999999999999984 7889999999985
No 47
>PLN02511 hydrolase
Probab=99.61 E-value=3.7e-15 Score=133.93 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=55.3
Q ss_pred hhhhhhcCCCCEEEEeeCCCCC-CCchh-HHHHHHhcCCCceEEEEeCCCCccccccChHH------HHHHHHHHhhhch
Q psy17711 170 HRVDQLAAHVPVTVIYGSRSWV-DNSSG-DKIKEARSQNSFVQVKSVTGAGHHVYADRADV------FNKMVNDTCTLSD 241 (335)
Q Consensus 170 ~~l~~i~i~~PvLii~G~~D~~-~~~~~-~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~------~~~~I~~fl~~~~ 241 (335)
..+..+ ++|+|+|+|++|++ ++... ....+..++ +++++++++||+.++|+|+. +.+.+.+|++.+.
T Consensus 292 ~~L~~I--~vPtLiI~g~dDpi~p~~~~~~~~~~~~p~---~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 292 DSIKHV--RVPLLCIQAANDPIAPARGIPREDIKANPN---CLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred hhhccC--CCCeEEEEcCCCCcCCcccCcHhHHhcCCC---EEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 344555 99999999999998 76654 445666677 99999999999999999976 5899999998875
Q ss_pred h
Q psy17711 242 E 242 (335)
Q Consensus 242 ~ 242 (335)
.
T Consensus 367 ~ 367 (388)
T PLN02511 367 E 367 (388)
T ss_pred H
Confidence 4
No 48
>PRK05855 short chain dehydrogenase; Validated
Probab=99.59 E-value=9e-15 Score=139.27 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhch
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~ 241 (335)
++|+++|+|++|.+ ++...+.+.+.+++ .++++++ +||++++|+|+++++.|.+|++...
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~~~---~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWVPR---LWRREIK-AGHWLPMSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccCCc---ceEEEcc-CCCcchhhChhHHHHHHHHHHHhcc
Confidence 89999999999998 88888888888877 7888887 6999999999999999999999764
No 49
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.57 E-value=1.6e-13 Score=124.00 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=51.1
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhc
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLS 240 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~ 240 (335)
++|+|+|+|++|.+ |++..+.+.+..++ .++++++++ ++.+.++++.+.|.+||...
T Consensus 355 ~~PvLiI~G~~D~ivP~~~a~~l~~~~~~---~~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 355 PTPMLSGYWKNDPFSPEEDSRLIASSSAD---GKLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhCCC---CeEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 89999999999999 99999998988888 899999986 56679999999999999753
No 50
>KOG1552|consensus
Probab=99.56 E-value=2.8e-14 Score=115.76 Aligned_cols=154 Identities=22% Similarity=0.333 Sum_probs=107.0
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhC-CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELK-LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQK 79 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg-~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~ 79 (335)
+|.|++.+...+ ..+|+-.....+.+..| .++++|+|+|+|+..++.+|++.| ++++||.+|.....
T Consensus 99 yG~S~G~psE~n---~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~------- 166 (258)
T KOG1552|consen 99 YGRSSGKPSERN---LYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGM------- 166 (258)
T ss_pred ccccCCCccccc---chhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhh-------
Confidence 577876653322 22455555555556664 678999999999999999999999 99999999842110
Q ss_pred ccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhh
Q psy17711 80 ASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTE 159 (335)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
+. +.. ....
T Consensus 167 --------rv---~~~------------------------~~~~------------------------------------ 175 (258)
T KOG1552|consen 167 --------RV---AFP------------------------DTKT------------------------------------ 175 (258)
T ss_pred --------hh---hcc------------------------Ccce------------------------------------
Confidence 00 000 0000
Q ss_pred ccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 160 GLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 160 ~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
.+.++.....+++..+ +||+|++||++|.+ +..+..++.+..++ + .+..++.|+||.-..-.|+ +.+.+..|+.
T Consensus 176 ~~~~d~f~~i~kI~~i--~~PVLiiHgtdDevv~~sHg~~Lye~~k~-~-~epl~v~g~gH~~~~~~~~-yi~~l~~f~~ 250 (258)
T KOG1552|consen 176 TYCFDAFPNIEKISKI--TCPVLIIHGTDDEVVDFSHGKALYERCKE-K-VEPLWVKGAGHNDIELYPE-YIEHLRRFIS 250 (258)
T ss_pred EEeeccccccCcceec--cCCEEEEecccCceecccccHHHHHhccc-c-CCCcEEecCCCcccccCHH-HHHHHHHHHH
Confidence 0001111113445555 99999999999999 99999999999998 4 6889999999987765555 7788999988
Q ss_pred hchh
Q psy17711 239 LSDE 242 (335)
Q Consensus 239 ~~~~ 242 (335)
.+..
T Consensus 251 ~~~~ 254 (258)
T KOG1552|consen 251 SVLP 254 (258)
T ss_pred Hhcc
Confidence 7654
No 51
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.56 E-value=1.7e-13 Score=117.64 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHh-----CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKEL-----KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSI 75 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~l-----g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~ 75 (335)
||.|+... .+++++.+|+.++++.+ +.++++++||||||.+++.+|.. +++|+++|+++|........
T Consensus 68 ~G~S~~~~------~~~~~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~ 140 (274)
T TIGR03100 68 MGDSEGEN------LGFEGIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQ 140 (274)
T ss_pred CCCCCCCC------CCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccc
Confidence 67776432 23356667777777665 56789999999999999999875 46899999999864322211
Q ss_pred CcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhc-CCChHHHH
Q psy17711 76 DPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQ-APSGESAF 154 (335)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 154 (335)
. ....... ....... ..... ..+...+.-. .....+....... .+......
T Consensus 141 ~-------~~~~~~~--~~~~~~~-----------~~~~~-------~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 192 (274)
T TIGR03100 141 A-------ASRIRHY--YLGQLLS-----------ADFWR-------KLLSGEVNLG-SSLRGLGDALLKARQKGDEVAH 192 (274)
T ss_pred h-------HHHHHHH--HHHHHhC-----------hHHHH-------HhcCCCccHH-HHHHHHHHHHHhhhhcCCCccc
Confidence 0 0001000 0000000 00000 0000000000 0001111000000 00000000
Q ss_pred HHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCCCCchh------HHHHHHhcCCCceEEEEeCCCCcccccc-ChH
Q psy17711 155 HTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSG------DKIKEARSQNSFVQVKSVTGAGHHVYAD-RAD 227 (335)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~~~~~~------~~l~~~~~~~~~~~~~~i~~~gH~~~~e-~p~ 227 (335)
.. ...+....+..+ ++|+++++|+.|...+... ..+.+.+.. ++++++++++++|++..+ .++
T Consensus 193 ~~-------~~~~~~~~l~~~--~~P~ll~~g~~D~~~~~~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~H~l~~e~~~~ 262 (274)
T TIGR03100 193 GG-------LAERMKAGLERF--QGPVLFILSGNDLTAQEFADSVLGEPAWRGALED-PGIERVEIDGADHTFSDRVWRE 262 (274)
T ss_pred ch-------HHHHHHHHHHhc--CCcEEEEEcCcchhHHHHHHHhccChhhHHHhhc-CCeEEEecCCCCcccccHHHHH
Confidence 00 112233444555 8999999999998722222 445555532 339999999999999665 569
Q ss_pred HHHHHHHHHhhh
Q psy17711 228 VFNKMVNDTCTL 239 (335)
Q Consensus 228 ~~~~~I~~fl~~ 239 (335)
++.+.|.+||++
T Consensus 263 ~v~~~i~~wL~~ 274 (274)
T TIGR03100 263 WVAARTTEWLRR 274 (274)
T ss_pred HHHHHHHHHHhC
Confidence 999999999963
No 52
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.55 E-value=4.9e-14 Score=125.47 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccC---hHHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADR---ADVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~---p~~~~~~I~~fl~~ 239 (335)
++|+++++|++|.+ ++...+.+.+.+++ .+.++++++ +||...+.. ++++...|.+|++.
T Consensus 286 ~~Pvliv~G~~D~i~~~~~~~~~~~~~~~-~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 286 KMPILNIYAERDHLVPPDASKALNDLVSS-EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHcCC-CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 99999999999998 88999999999886 557888888 599987764 47888888888864
No 53
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=108.95 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=112.9
Q ss_pred cHHHHHHHHHHHH---HHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhh
Q psy17711 16 VERQLVTSIEEWR---KELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGN 92 (335)
Q Consensus 16 ~~~~~~~dl~~ll---~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (335)
+.+++-+++.+-. ...|.+.+.++|-||||.+++.+|..+| ++++|.++++......... +........
T Consensus 64 ~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~i-----ie~~l~y~~- 135 (243)
T COG1647 64 TPRDWWEDVEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRII-----IEGLLEYFR- 135 (243)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhh-----hHHHHHHHH-
Confidence 4456666555544 4457789999999999999999999999 8999999986543332110 111111100
Q ss_pred hcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhh
Q psy17711 93 LYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRV 172 (335)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 172 (335)
.+...-..+.+...+...............++.+.. .....+
T Consensus 136 -------------------------------~~kk~e~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~-------~~~~~~ 177 (243)
T COG1647 136 -------------------------------NAKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIK-------DARRSL 177 (243)
T ss_pred -------------------------------HhhhccCCCHHHHHHHHHHhhcchHHHHHHHHHHHH-------HHHhhh
Confidence 000001111111333333332112222222222222 223445
Q ss_pred hhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCcccccc-ChHHHHHHHHHHhhh
Q psy17711 173 DQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYAD-RADVFNKMVNDTCTL 239 (335)
Q Consensus 173 ~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e-~p~~~~~~I~~fl~~ 239 (335)
+.| ..|++++.|.+|++ +.+.+..+.+.+.. .+.++.+++++||.+..+ ..+.+.+.+..||+.
T Consensus 178 ~~I--~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s-~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 178 DKI--YSPTLVVQGRQDEMVPAESANFIYDHVES-DDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred hhc--ccchhheecccCCCCCHHHHHHHHHhccC-CcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 555 99999999999999 99999999998877 668999999999999886 788999999999863
No 54
>PRK10985 putative hydrolase; Provisional
Probab=99.54 E-value=1.4e-13 Score=121.18 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=51.8
Q ss_pred hhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccCh-----HHHHHHHHHHhhhc
Q psy17711 170 HRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRA-----DVFNKMVNDTCTLS 240 (335)
Q Consensus 170 ~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p-----~~~~~~I~~fl~~~ 240 (335)
..+..+ ++|+++|+|++|++ +++..+.+.+..++ .++++++++||+.++|.. -...+.+.+|+...
T Consensus 249 ~~l~~i--~~P~lii~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 249 PLLNQI--RKPTLIIHAKDDPFMTHEVIPKPESLPPN---VEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred HHHhCC--CCCEEEEecCCCCCCChhhChHHHHhCCC---eEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 344445 99999999999998 87777777777777 899999999999999842 35667777777543
No 55
>PRK13604 luxD acyl transferase; Provisional
Probab=99.51 E-value=2.9e-12 Score=108.97 Aligned_cols=65 Identities=9% Similarity=0.136 Sum_probs=50.8
Q ss_pred hhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhchh
Q psy17711 170 HRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSDE 242 (335)
Q Consensus 170 ~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~~ 242 (335)
+.+..+ ++|+|+|||++|.+ +++.++.+.+.+++ .+++++.++|++|.+.. ++- .+++|.+.+..
T Consensus 196 ~~~~~l--~~PvLiIHG~~D~lVp~~~s~~l~e~~~s-~~kkl~~i~Ga~H~l~~-~~~----~~~~~~~~~~~ 261 (307)
T PRK13604 196 NKMKGL--DIPFIAFTANNDSWVKQSEVIDLLDSIRS-EQCKLYSLIGSSHDLGE-NLV----VLRNFYQSVTK 261 (307)
T ss_pred HHHhhc--CCCEEEEEcCCCCccCHHHHHHHHHHhcc-CCcEEEEeCCCccccCc-chH----HHHHHHHHHHH
Confidence 334444 89999999999988 99999999998875 45899999999997764 333 46677776644
No 56
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.49 E-value=4.8e-13 Score=122.96 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=46.2
Q ss_pred hhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHH
Q psy17711 171 RVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADV 228 (335)
Q Consensus 171 ~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~ 228 (335)
.+..+ ++|+++++|++|.+ +++....+.+.+++ .+..+++++||.+++++|..
T Consensus 410 dL~~I--~vPvLvV~G~~D~IvP~~sa~~l~~~i~~---~~~~vL~~sGHi~~ienPp~ 463 (532)
T TIGR01838 410 DLSKV--KVPVYIIATREDHIAPWQSAYRGAALLGG---PKTFVLGESGHIAGVVNPPS 463 (532)
T ss_pred chhhC--CCCEEEEeeCCCCcCCHHHHHHHHHHCCC---CEEEEECCCCCchHhhCCCC
Confidence 34444 99999999999999 88999999999987 78889999999999998863
No 57
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.49 E-value=1.1e-12 Score=111.99 Aligned_cols=213 Identities=17% Similarity=0.242 Sum_probs=126.4
Q ss_pred hhccHHHHHHHHHHHHHHhCCCcEE-EEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhh
Q psy17711 13 PETVERQLVTSIEEWRKELKLQEMI-LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIG 91 (335)
Q Consensus 13 ~~~~~~~~~~dl~~ll~~lg~~~~~-lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (335)
+.++++|++..-..++++||++++. +||.||||+.++.++..||++|+++|.+++....... ...+....
T Consensus 125 P~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~---------~ia~~~~~ 195 (368)
T COG2021 125 PVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQ---------NIAFNEVQ 195 (368)
T ss_pred CcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHH---------HHHHHHHH
Confidence 4578899999989999999999987 9999999999999999999999999999985432221 11111111
Q ss_pred hhcccCCCCC-------------cccccCCchhhHHhhhCCCcccccCCC-----Cc--cchhHHHHHHHHhhhcCC---
Q psy17711 92 NLYKNFNPLW-------------PVRFVGPLGQWVVEKMRPDLPKKFTPV-----LK--EDSSAITEYIFQCNVQAP--- 148 (335)
Q Consensus 92 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~--- 148 (335)
+..-...|.+ -++....+. .+.-+....+.+.+.+. .. .....++.|+........
T Consensus 196 r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~l~-~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rf 274 (368)
T COG2021 196 RQAIEADPDWNGGDYYEGTQPERGLRLARMLA-HLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARF 274 (368)
T ss_pred HHHHHhCCCccCCCccCCCCcchhHHHHHHHH-HHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhcc
Confidence 1111111111 111000000 00000011111222211 11 112335556554432221
Q ss_pred ChHHHHHHhhhccCCcc----chhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeC-CCCcccc
Q psy17711 149 SGESAFHTLTEGLGYAK----RPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVT-GAGHHVY 222 (335)
Q Consensus 149 ~~~~~~~~~~~~~~~~~----~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~-~~gH~~~ 222 (335)
.....+......-.++. .+..+.++.+ ++|+|++.-+.|.+ |++..+.+.+.++. ... +++++ ..||..+
T Consensus 275 DaNsYL~lt~ald~~D~s~~~~~l~~al~~i--~~~~lv~gi~sD~lfp~~~~~~~~~~L~~-~~~-~~~i~S~~GHDaF 350 (368)
T COG2021 275 DANSYLYLTRALDYHDVSRGRGDLTAALARI--KAPVLVVGITSDWLFPPELQRALAEALPA-AGA-LREIDSPYGHDAF 350 (368)
T ss_pred CcchHHHHHHHHHhcCCCCCcCcHHHHHhcC--ccCEEEEEecccccCCHHHHHHHHHhccc-cCc-eEEecCCCCchhh
Confidence 11222222221111221 2333445555 89999999999999 99999999999998 322 65554 5799999
Q ss_pred ccChHHHHHHHHHHhhh
Q psy17711 223 ADRADVFNKMVNDTCTL 239 (335)
Q Consensus 223 ~e~p~~~~~~I~~fl~~ 239 (335)
+...+.+...|..||+.
T Consensus 351 L~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 351 LVESEAVGPLIRKFLAL 367 (368)
T ss_pred hcchhhhhHHHHHHhhc
Confidence 99889899999999874
No 58
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.49 E-value=8.2e-13 Score=110.03 Aligned_cols=199 Identities=14% Similarity=0.183 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhc
Q psy17711 15 TVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLY 94 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (335)
-+++++++++.++++++|++.++.+|-..|+.|..++|..||++|.|+||+++...... |........
T Consensus 80 Psmd~LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~g------------w~Ew~~~K~ 147 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAG------------WMEWFYQKL 147 (283)
T ss_dssp --HHHHHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---------------HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCcc------------HHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999998654322 333322222
Q ss_pred ccCCCCCcccccCCchhhHHhhhCCCcccccCCCC-ccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhh
Q psy17711 95 KNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVL-KEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVD 173 (335)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (335)
.... .............+.... |.... ..+.+.++.|....... .+...+..+...+.. .++.....+
T Consensus 148 ~~~~-L~~~gmt~~~~d~Ll~h~-------Fg~~~~~~n~Dlv~~yr~~l~~~--~Np~Nl~~f~~sy~~-R~DL~~~~~ 216 (283)
T PF03096_consen 148 SSWL-LYSYGMTSSVKDYLLWHY-------FGKEEEENNSDLVQTYRQHLDER--INPKNLALFLNSYNS-RTDLSIERP 216 (283)
T ss_dssp H--------CTTS-HHHHHHHHH-------S-HHHHHCT-HHHHHHHHHHHT---TTHHHHHHHHHHHHT------SECT
T ss_pred hccc-ccccccccchHHhhhhcc-------cccccccccHHHHHHHHHHHhcC--CCHHHHHHHHHHHhc-cccchhhcC
Confidence 1100 000000011111111110 10000 01222233443333111 111111111111110 011111122
Q ss_pred hhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhc
Q psy17711 174 QLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLS 240 (335)
Q Consensus 174 ~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~ 240 (335)
.. .||+|++.|+..+.- +....+...+.. .+.++..+++||=.+..|+|+.+++.+.-|++..
T Consensus 217 ~~--~c~vLlvvG~~Sp~~-~~vv~~ns~Ldp-~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 217 SL--GCPVLLVVGDNSPHV-DDVVEMNSKLDP-TKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGM 279 (283)
T ss_dssp TC--CS-EEEEEETTSTTH-HHHHHHHHHS-C-CCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHT
T ss_pred CC--CCCeEEEEecCCcch-hhHHHHHhhcCc-ccceEEEecccCCcccccCcHHHHHHHHHHHccC
Confidence 23 799999999998762 334566767765 5689999999999999999999999999999865
No 59
>KOG2931|consensus
Probab=99.47 E-value=3.6e-12 Score=104.73 Aligned_cols=201 Identities=13% Similarity=0.165 Sum_probs=120.1
Q ss_pred ccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhc
Q psy17711 15 TVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLY 94 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (335)
-+++++++++..++++++++.++-+|--.|+.|..++|..||++|.||||+++...... |..+.....
T Consensus 103 Psmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~g------------wiew~~~K~ 170 (326)
T KOG2931|consen 103 PSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKG------------WIEWAYNKV 170 (326)
T ss_pred CCHHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCch------------HHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999998654333 222211111
Q ss_pred cc-CCCCCcccccCCchhhHH-hhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCC--ccchhhh
Q psy17711 95 KN-FNPLWPVRFVGPLGQWVV-EKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGY--AKRPMLH 170 (335)
Q Consensus 95 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 170 (335)
.. +.... .........+. ..+.++. ...+.+.+..|........ +...+..+...+.. +......
T Consensus 171 ~s~~l~~~--Gmt~~~~d~ll~H~Fg~e~-------~~~~~diVq~Yr~~l~~~~--N~~Nl~~fl~ayn~R~DL~~~r~ 239 (326)
T KOG2931|consen 171 SSNLLYYY--GMTQGVKDYLLAHHFGKEE-------LGNNSDIVQEYRQHLGERL--NPKNLALFLNAYNGRRDLSIERP 239 (326)
T ss_pred HHHHHHhh--chhhhHHHHHHHHHhcccc-------ccccHHHHHHHHHHHHhcC--ChhHHHHHHHHhcCCCCccccCC
Confidence 10 00000 00000001111 1111111 1113333455544432221 11112222221111 1111111
Q ss_pred hhhhhcCCCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhch
Q psy17711 171 RVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 171 ~l~~i~i~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~ 241 (335)
.... +++||+|++.|+..+.- +........+.. .+.++..+.+||-.+..++|..+++.+.-|+....
T Consensus 240 ~~~~-tlkc~vllvvGd~Sp~~-~~vv~~n~~Ldp-~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~G 307 (326)
T KOG2931|consen 240 KLGT-TLKCPVLLVVGDNSPHV-SAVVECNSKLDP-TYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGMG 307 (326)
T ss_pred CcCc-cccccEEEEecCCCchh-hhhhhhhcccCc-ccceEEEEcccCCcccccCchHHHHHHHHHHccCC
Confidence 1110 23799999999998652 233445555544 56889999999999999999999999999998864
No 60
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.47 E-value=2.3e-12 Score=108.97 Aligned_cols=55 Identities=33% Similarity=0.536 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 16 VERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
....+++++..++++++..+++++||||||.+++.++.++|++++++|++++...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 70 SLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 3355699999999999999999999999999999999999999999999997654
No 61
>PRK11071 esterase YqiA; Provisional
Probab=99.45 E-value=7e-13 Score=107.12 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhcccC
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNF 97 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (335)
+++++++.+++++++.++++++||||||.+++.+|.++|. ++|+++|+..+. ..........
T Consensus 45 ~~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~~~~~---------------~~~~~~~~~~ 106 (190)
T PRK11071 45 ADAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCFML---PAVVVNPAVRPF---------------ELLTDYLGEN 106 (190)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHcCC---CEEEECCCCCHH---------------HHHHHhcCCc
Confidence 5789999999999999999999999999999999999993 468888853210 0000000000
Q ss_pred CCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhhhhcC
Q psy17711 98 NPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA 177 (335)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~i 177 (335)
. .... ...+.- -..++.+. .. .. +..+..
T Consensus 107 ~-------------------~~~~----~~~~~~----~~~~~~d~--------------~~---~~-------~~~i~~ 135 (190)
T PRK11071 107 E-------------------NPYT----GQQYVL----ESRHIYDL--------------KV---MQ-------IDPLES 135 (190)
T ss_pred c-------------------cccC----CCcEEE----cHHHHHHH--------------Hh---cC-------CccCCC
Confidence 0 0000 000000 01111111 00 00 011112
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
.+|+++++|++|.+ +++.+..+.+. ++.+.++|++|.. ...+++.+.|.+|+.
T Consensus 136 ~~~v~iihg~~De~V~~~~a~~~~~~------~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 136 PDLIWLLQQTGDEVLDYRQAVAYYAA------CRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred hhhEEEEEeCCCCcCCHHHHHHHHHh------cceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 78999999999999 99988888873 4566889999988 445888889988874
No 62
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.42 E-value=1.7e-12 Score=130.13 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=57.9
Q ss_pred hhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEE-EEeCCCCcccccc---ChHHHHHHHHHHhhhchhhh
Q psy17711 172 VDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQV-KSVTGAGHHVYAD---RADVFNKMVNDTCTLSDEKL 244 (335)
Q Consensus 172 l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~-~~i~~~gH~~~~e---~p~~~~~~I~~fl~~~~~~~ 244 (335)
+.++ ++|+|+|+|++|.+ +++..+.+.+.+++ .++ .+++++||+.++- .++++...|.+||.+.....
T Consensus 293 L~~i--~~P~L~i~G~~D~ivp~~~~~~l~~~i~~---a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~ 365 (994)
T PRK07868 293 LADI--TCPVLAFVGEVDDIGQPASVRGIRRAAPN---AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDG 365 (994)
T ss_pred hhhC--CCCEEEEEeCCCCCCCHHHHHHHHHhCCC---CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCC
Confidence 4455 99999999999999 99999999999988 776 6778999998873 68889999999999865543
No 63
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.41 E-value=9.1e-12 Score=102.98 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhcc
Q psy17711 18 RQLVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYK 95 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (335)
+|+.+.+..++++-.+ +++.++|||+||.+++.++..+|+++++++..+|............. +. .
T Consensus 46 ~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~---~------- 113 (213)
T PF00326_consen 46 DDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YT---K------- 113 (213)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHTCCGSSEEEEESE-SSTTCSBHHTCC--HH---H-------
T ss_pred hhHHHHHHHHhccccccceeEEEEcccccccccchhhcccceeeeeeeccceecchhcccccccc--cc---c-------
Confidence 4444444444444333 58999999999999999999999999999999985432221000000 00 0
Q ss_pred cCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhhhh
Q psy17711 96 NFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQL 175 (335)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 175 (335)
..+.... ........+..... ...+..+
T Consensus 114 -----------------------------------------~~~~~~~--~~~~~~~~~~~~s~---------~~~~~~~ 141 (213)
T PF00326_consen 114 -----------------------------------------AEYLEYG--DPWDNPEFYRELSP---------ISPADNV 141 (213)
T ss_dssp -----------------------------------------GHHHHHS--STTTSHHHHHHHHH---------GGGGGGC
T ss_pred -----------------------------------------ccccccC--ccchhhhhhhhhcc---------ccccccc
Confidence 0000000 00001111111110 1111220
Q ss_pred cCCCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCccccc-cChHHHHHHHHHHhhhc
Q psy17711 176 AAHVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYA-DRADVFNKMVNDTCTLS 240 (335)
Q Consensus 176 ~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~-e~p~~~~~~I~~fl~~~ 240 (335)
.+++|+|++||++|.. ++..+..+.+.+.. +.+++++++|++||.... +...+..+.+.+|+++.
T Consensus 142 ~~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 142 QIKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 0289999999999988 88988888877654 355999999999995553 45556777788887754
No 64
>PLN02872 triacylglycerol lipase
Probab=99.39 E-value=3.9e-12 Score=113.75 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=54.6
Q ss_pred hhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccc---cccChHHHHHHHHHHhhhch
Q psy17711 174 QLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHV---YADRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 174 ~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~---~~e~p~~~~~~I~~fl~~~~ 241 (335)
.++.++|+++++|++|.+ ++...+.+.+.+++ . .+++.++++||.. ..+.|+++.+.|.+|+++..
T Consensus 321 ~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~-~-~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 321 LIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS-K-PELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred cCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC-c-cEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 333368999999999999 88888999998886 2 5788999999963 44889999999999998543
No 65
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=1.2e-11 Score=99.96 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=103.7
Q ss_pred hccHHHHHHHHHHHHH-HhCCCcEEEEEechhHHHHHHHHHhCCc---hhceeeEecCCCCCCCCCCcccccchHHHHHH
Q psy17711 14 ETVERQLVTSIEEWRK-ELKLQEMILLGHSFGGYLAFAYAIQYPD---RVKHLILADPWGFPQKSIDPQKASKIPLWARM 89 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~-~lg~~~~~lvGhS~Gg~ia~~~a~~~P~---~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~ 89 (335)
..+++++++.+..-+. -.-.+++.++||||||++|.++|.+.-. .+.++.+.+...+............-..+...
T Consensus 53 ~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~ 132 (244)
T COG3208 53 LTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLAD 132 (244)
T ss_pred cccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHH
Confidence 4566888888887777 3444789999999999999999987532 36667776654331111111000001111111
Q ss_pred hhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhh
Q psy17711 90 IGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPML 169 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (335)
+..+.. ....+-++.+...-++--. ...+ .....+.+...
T Consensus 133 l~~lgG-----------------------------~p~e~led~El~~l~LPil-------RAD~-~~~e~Y~~~~~--- 172 (244)
T COG3208 133 LVDLGG-----------------------------TPPELLEDPELMALFLPIL-------RADF-RALESYRYPPP--- 172 (244)
T ss_pred HHHhCC-----------------------------CChHHhcCHHHHHHHHHHH-------HHHH-HHhcccccCCC---
Confidence 111100 0000111111111110000 0000 11112222211
Q ss_pred hhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhc
Q psy17711 170 HRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLS 240 (335)
Q Consensus 170 ~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~ 240 (335)
.+++||+.++.|++|.. +.+....+.+...+ +.++++++| |||...++.+++.+.|.+.+...
T Consensus 173 -----~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~--~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~~~ 236 (244)
T COG3208 173 -----APLACPIHAFGGEKDHEVSRDELGAWREHTKG--DFTLRVFDG-GHFFLNQQREEVLARLEQHLAHH 236 (244)
T ss_pred -----CCcCcceEEeccCcchhccHHHHHHHHHhhcC--CceEEEecC-cceehhhhHHHHHHHHHHHhhhh
Confidence 23399999999999988 88888888888874 389999997 99999999999999998888643
No 66
>KOG4391|consensus
Probab=99.27 E-value=5.2e-12 Score=99.13 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHh----C--CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKEL----K--LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~l----g--~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
||.|...+...+ +.-|-.++++.+ . -.++++.|.|+||.+|..+|+++.+++.++|+-++.......
T Consensus 117 YG~S~GspsE~G-------L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~ 189 (300)
T KOG4391|consen 117 YGKSEGSPSEEG-------LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHM 189 (300)
T ss_pred cccCCCCccccc-------eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhh
Confidence 688887664323 233344444444 2 247999999999999999999999999999998874221000
Q ss_pred CCcccccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHH
Q psy17711 75 IDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAF 154 (335)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (335)
......|.. -+++... .+
T Consensus 190 ------------------~i~~v~p~~-----------------------------------~k~i~~l---------c~ 207 (300)
T KOG4391|consen 190 ------------------AIPLVFPFP-----------------------------------MKYIPLL---------CY 207 (300)
T ss_pred ------------------hhheeccch-----------------------------------hhHHHHH---------HH
Confidence 000000000 0000000 00
Q ss_pred HHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHH
Q psy17711 155 HTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMV 233 (335)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I 233 (335)
.. .|... ..+... ++|.|++.|.+|.+ ||...+.+.+.++. ...++.++|++.|.-.+-. +-+.++|
T Consensus 208 kn-----~~~S~---~ki~~~--~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S-~~Krl~eFP~gtHNDT~i~-dGYfq~i 275 (300)
T KOG4391|consen 208 KN-----KWLSY---RKIGQC--RMPFLFISGLKDELVPPVMMRQLYELCPS-RTKRLAEFPDGTHNDTWIC-DGYFQAI 275 (300)
T ss_pred Hh-----hhcch---hhhccc--cCceEEeecCccccCCcHHHHHHHHhCch-hhhhheeCCCCccCceEEe-ccHHHHH
Confidence 00 01111 112222 89999999999999 99999999999998 7789999999999887754 4578899
Q ss_pred HHHhhhchhh
Q psy17711 234 NDTCTLSDEK 243 (335)
Q Consensus 234 ~~fl~~~~~~ 243 (335)
.+||.+....
T Consensus 276 ~dFlaE~~~~ 285 (300)
T KOG4391|consen 276 EDFLAEVVKS 285 (300)
T ss_pred HHHHHHhccC
Confidence 9999887654
No 67
>PRK11460 putative hydrolase; Provisional
Probab=99.27 E-value=1.1e-10 Score=97.60 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=44.6
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
++|++++||++|.+ +.+..+.+.+.+.. ..++++++++++||.+..+.-+ .+.+||..
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~----~~~~~l~~ 207 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQ----FALDRLRY 207 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHH----HHHHHHHH
Confidence 68999999999999 98999888887764 2457899999999998644333 44455543
No 68
>KOG2564|consensus
Probab=99.26 E-value=7.3e-12 Score=102.14 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhC---CCcEEEEEechhHHHHHHHHHh--CCchhceeeEecC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELK---LQEMILLGHSFGGYLAFAYAIQ--YPDRVKHLILADP 67 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg---~~~~~lvGhS~Gg~ia~~~a~~--~P~~v~~lvli~~ 67 (335)
||+|.... ..+.+.+.++.|+.++++.+= ..+++||||||||.||.+.|.. .|. +.|+++++.
T Consensus 113 HGeTk~~~---e~dlS~eT~~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viDV 180 (343)
T KOG2564|consen 113 HGETKVEN---EDDLSLETMSKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVIDV 180 (343)
T ss_pred cCccccCC---hhhcCHHHHHHHHHHHHHHHhccCCCceEEEeccccchhhhhhhhhhhchh-hhceEEEEE
Confidence 67776544 235778999999999998772 3579999999999999988764 576 999999985
No 69
>PRK10566 esterase; Provisional
Probab=99.26 E-value=6.6e-11 Score=100.30 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=46.5
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCC---CceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQN---SFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~---~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
++|+|+++|++|.+ ++...+.+.+.++.. .++++++++++||... ++ ..+.+.+||++
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~~-~~~~~~~fl~~ 247 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---PE-ALDAGVAFFRQ 247 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---HH-HHHHHHHHHHh
Confidence 68999999999999 999999999887652 1368889999999864 44 56778888874
No 70
>PLN02442 S-formylglutathione hydrolase
Probab=99.20 E-value=6.4e-10 Score=95.86 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 17 ERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 17 ~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
.+++.+.+....+.++.++++++||||||..|+.++.++|+++++++.+++..
T Consensus 126 ~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 178 (283)
T PLN02442 126 VKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIA 178 (283)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCcc
Confidence 34555555555556677899999999999999999999999999999999854
No 71
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.19 E-value=8.6e-10 Score=94.79 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHH---hCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 18 RQLVTSIEEWRKE---LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 18 ~~~~~dl~~ll~~---lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
..+++++..+++. ++.++++++||||||.+++.++.++|+.+++++++++..
T Consensus 119 ~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 173 (275)
T TIGR02821 119 SYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIV 173 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCcc
Confidence 3456788888876 345689999999999999999999999999999998863
No 72
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.17 E-value=2.5e-10 Score=101.19 Aligned_cols=223 Identities=9% Similarity=-0.040 Sum_probs=115.4
Q ss_pred hhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhC-----CchhceeeEecCCCCCCCC-CCccccc--chH
Q psy17711 13 PETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-----PDRVKHLILADPWGFPQKS-IDPQKAS--KIP 84 (335)
Q Consensus 13 ~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~-----P~~v~~lvli~~~~~~~~~-~~~~~~~--~~~ 84 (335)
..++++||++-+.++++++|.+ ++++|+|+||..++.+++.+ |++++++++++++...... ....... .--
T Consensus 148 ~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~p~~v~~~a~~~~i 226 (406)
T TIGR01849 148 GKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARASPTVVNELAREKPI 226 (406)
T ss_pred CCCCHHHHHHHHHHHHHHhCCC-CcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCCCchHHHHhhcccH
Confidence 3567799999999999999977 99999999999988777765 6779999999887654432 2111000 000
Q ss_pred HHHHH-hhhhcccCCCCCcccccC-CchhhHHhhhCC-----CcccccCCCCccchhHH---HHHHHHhhhcCCChHHHH
Q psy17711 85 LWARM-IGNLYKNFNPLWPVRFVG-PLGQWVVEKMRP-----DLPKKFTPVLKEDSSAI---TEYIFQCNVQAPSGESAF 154 (335)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 154 (335)
.|+.. .........+-...+... ............ ...+.+......+.+.. ..+..............+
T Consensus 227 ~~~~~~~i~~vp~~~~g~gr~v~PG~~~~~~F~~mnp~r~~~~~~~~~~~l~~gd~~~~~~~~~f~~~y~d~~dlpge~y 306 (406)
T TIGR01849 227 EWFQHNVIMRVPFPYPGAGRLVYPGFLQLAGFISMNLDRHTKAHSDFFLHLVKGDGQEADKHRIFYDEYLAVMDMTAEFY 306 (406)
T ss_pred HHHHHHhhhccCccccCCCCcccCHHHHHHHHHHcCcchHHHHHHHHHHHHhcCCcchHHHHHHHHHHhhhccCCcHHHH
Confidence 11111 100000000000000000 000000000000 00001101111111111 112121111222222222
Q ss_pred HHhhhc----cC-----CccchhhhhhhhhcCC-CCEEEEeeCCCCC-CCchhHHHHHHh---cCCCceEEEEeCCCCcc
Q psy17711 155 HTLTEG----LG-----YAKRPMLHRVDQLAAH-VPVTVIYGSRSWV-DNSSGDKIKEAR---SQNSFVQVKSVTGAGHH 220 (335)
Q Consensus 155 ~~~~~~----~~-----~~~~~~~~~l~~i~i~-~PvLii~G~~D~~-~~~~~~~l~~~~---~~~~~~~~~~i~~~gH~ 220 (335)
...... .. +......-.+..| + +|+|.+.|++|.+ ++.....+.+.+ +. .+.+.+..+++||.
T Consensus 307 ~~~v~~vf~~n~L~~G~l~v~G~~Vdl~~I--~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s-~~k~~~~~~~~GH~ 383 (406)
T TIGR01849 307 LQTIDVVFQQFLLPQGKFIVEGKRVDPGAI--TRVALLTVEGENDDISGLGQTKAALRLCTGIPE-DMKRHHLQPGVGHY 383 (406)
T ss_pred HHHHHHHHHhCCccCCcEEECCEEecHHHC--cccceEEEeccCCCcCCHHHhHHHHHHhhcCCh-hhceEeecCCCCeE
Confidence 222111 01 1111111223334 7 9999999999999 999999999986 54 55678888889999
Q ss_pred cccc---ChHHHHHHHHHHhhh
Q psy17711 221 VYAD---RADVFNKMVNDTCTL 239 (335)
Q Consensus 221 ~~~e---~p~~~~~~I~~fl~~ 239 (335)
..+- -++++.-.|.+||..
T Consensus 384 Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 384 GVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred EEeeChhhhhhhchHHHHHHHh
Confidence 8885 467788889998864
No 73
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.16 E-value=5.5e-10 Score=92.48 Aligned_cols=125 Identities=19% Similarity=0.275 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHh---CC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhh
Q psy17711 17 ERQLVTSIEEWRKEL---KL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIG 91 (335)
Q Consensus 17 ~~~~~~dl~~ll~~l---g~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (335)
+++.++.+.++++.. ++ +++++.|+|.||++++.++.++|+.+.++|.+++........
T Consensus 83 i~~s~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~---------------- 146 (216)
T PF02230_consen 83 IEESAERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL---------------- 146 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc----------------
Confidence 344455555555532 33 589999999999999999999999999999999853211100
Q ss_pred hhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhh
Q psy17711 92 NLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHR 171 (335)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (335)
...
T Consensus 147 -----------------------------------------------------------------------------~~~ 149 (216)
T PF02230_consen 147 -----------------------------------------------------------------------------EDR 149 (216)
T ss_dssp -----------------------------------------------------------------------------HCC
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred hhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 172 VDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 172 l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
..... ++|++++||++|.+ |.+..+...+.+.. ..+++++.+++.||.+.. +..+.+.+||++
T Consensus 150 ~~~~~-~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~~----~~~~~~~~~l~~ 214 (216)
T PF02230_consen 150 PEALA-KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEISP----EELRDLREFLEK 214 (216)
T ss_dssp HCCCC-TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS--H----HHHHHHHHHHHH
T ss_pred ccccC-CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCH----HHHHHHHHHHhh
Confidence 00000 68999999999999 88888888888776 346899999999998753 345567788765
No 74
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.15 E-value=2.4e-09 Score=88.53 Aligned_cols=69 Identities=26% Similarity=0.411 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCC-cEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQ-EMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~-~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
||.++.++ +..|+-.+-..-+.++++.++++ +++.+|||.||-.|+.+|..+| +.|+++++|++.....
T Consensus 73 f~~t~~~~---~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G~r~Hk 142 (297)
T PF06342_consen 73 FGFTPGYP---DQQYTNEERQNFVNALLDELGIKGKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPGLRPHK 142 (297)
T ss_pred CCCCCCCc---ccccChHHHHHHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcCc--cceEEEecCCcccccc
Confidence 45555544 34566688899999999999994 7899999999999999999996 6799999998765543
No 75
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.15 E-value=5e-10 Score=86.43 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=69.2
Q ss_pred hCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhcccCCCCCcccccCCch
Q psy17711 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLG 110 (335)
Q Consensus 31 lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (335)
.+.++++++|||+||.+++.++.++ .+|+++|++++.. .
T Consensus 58 ~~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~--~-------------------------------------- 96 (145)
T PF12695_consen 58 PDPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYP--D-------------------------------------- 96 (145)
T ss_dssp CTCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESS--G--------------------------------------
T ss_pred CCCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCcc--c--------------------------------------
Confidence 3668999999999999999999998 6899999999820 0
Q ss_pred hhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCC
Q psy17711 111 QWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSW 190 (335)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~ 190 (335)
...+... ++|+++++|++|.
T Consensus 97 ----------------------------------------------------------~~~~~~~--~~pv~~i~g~~D~ 116 (145)
T PF12695_consen 97 ----------------------------------------------------------SEDLAKI--RIPVLFIHGENDP 116 (145)
T ss_dssp ----------------------------------------------------------CHHHTTT--TSEEEEEEETT-S
T ss_pred ----------------------------------------------------------hhhhhcc--CCcEEEEEECCCC
Confidence 0111122 7899999999999
Q ss_pred C-CCchhHHHHHHhcCCCceEEEEeCCCCcc
Q psy17711 191 V-DNSSGDKIKEARSQNSFVQVKSVTGAGHH 220 (335)
Q Consensus 191 ~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~ 220 (335)
. +++..+.+.+.++. +.++++++|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~--~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 117 LVPPEQVRRLYEALPG--PKELYIIPGAGHF 145 (145)
T ss_dssp SSHHHHHHHHHHHHCS--SEEEEEETTS-TT
T ss_pred cCCHHHHHHHHHHcCC--CcEEEEeCCCcCc
Confidence 9 88889998888873 3899999999996
No 76
>KOG4667|consensus
Probab=99.08 E-value=2.9e-09 Score=83.88 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhCC-Cc--EEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhc
Q psy17711 18 RQLVTSIEEWRKELKL-QE--MILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLY 94 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~-~~--~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (335)
...|+|+..++.++.- .+ -+++|||-||-+++.+|.++++ ++-+|.+++-......-..........|...-..+-
T Consensus 86 ~~eadDL~sV~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid 164 (269)
T KOG4667|consen 86 NTEADDLHSVIQYFSNSNRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFID 164 (269)
T ss_pred cchHHHHHHHHHHhccCceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCcee
Confidence 4567999999998853 33 4689999999999999999988 777777665332211100000000011111000000
Q ss_pred ccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhhh
Q psy17711 95 KNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQ 174 (335)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (335)
. ..-...+...+.+. .+...+ ..+..+....
T Consensus 165 ----------------~-------~~rkG~y~~rvt~e-----------------------SlmdrL---ntd~h~aclk 195 (269)
T KOG4667|consen 165 ----------------V-------GPRKGKYGYRVTEE-----------------------SLMDRL---NTDIHEACLK 195 (269)
T ss_pred ----------------c-------CcccCCcCceecHH-----------------------HHHHHH---hchhhhhhcC
Confidence 0 00000000000000 000000 1122233344
Q ss_pred hcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 175 LAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 175 i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
|...||||-+||..|.+ |.+.+..+++.+++ -++.++||+.|.....+ .+.......|..
T Consensus 196 Id~~C~VLTvhGs~D~IVPve~AkefAk~i~n---H~L~iIEgADHnyt~~q-~~l~~lgl~f~k 256 (269)
T KOG4667|consen 196 IDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN---HKLEIIEGADHNYTGHQ-SQLVSLGLEFIK 256 (269)
T ss_pred cCccCceEEEeccCCceeechhHHHHHHhccC---CceEEecCCCcCccchh-hhHhhhcceeEE
Confidence 56689999999999999 99999999999999 78999999999876643 334455555544
No 77
>COG0400 Predicted esterase [General function prediction only]
Probab=99.00 E-value=5.5e-09 Score=84.52 Aligned_cols=122 Identities=18% Similarity=0.227 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhh
Q psy17711 16 VERQLVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNL 93 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (335)
..+.+++.+..+.++.++ ++++++|+|-|+.+++.+...+|+.+++++++++........
T Consensus 79 ~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~------------------ 140 (207)
T COG0400 79 ETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPEL------------------ 140 (207)
T ss_pred HHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCcc------------------
Confidence 445667777777788888 789999999999999999999999999999999854322110
Q ss_pred cccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhh
Q psy17711 94 YKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVD 173 (335)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (335)
...+.
T Consensus 141 ---------------------------------------------------------------------------~~~~~ 145 (207)
T COG0400 141 ---------------------------------------------------------------------------LPDLA 145 (207)
T ss_pred ---------------------------------------------------------------------------ccccC
Confidence 00000
Q ss_pred hhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 174 QLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 174 ~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
..|++++||+.|++ |.....++.+.+.. +.+++..+++ .||.+..+. .+.+.+|+..
T Consensus 146 ----~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~e~----~~~~~~wl~~ 204 (207)
T COG0400 146 ----GTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPPEE----LEAARSWLAN 204 (207)
T ss_pred ----CCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCHHH----HHHHHHHHHh
Confidence 79999999999999 88888888887765 4568999999 699887653 3455567654
No 78
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.97 E-value=8.5e-09 Score=94.33 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=46.6
Q ss_pred hccHHHHHHHHHHHHHH----hCCCcEEEEEechhHHHHHH----HHHhCCc-hhceeeEecCCCCCC
Q psy17711 14 ETVERQLVTSIEEWRKE----LKLQEMILLGHSFGGYLAFA----YAIQYPD-RVKHLILADPWGFPQ 72 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~----lg~~~~~lvGhS~Gg~ia~~----~a~~~P~-~v~~lvli~~~~~~~ 72 (335)
.+++++|++.+.+.++. .|.++++++|||+||.++.. +++++++ +|++++++.++....
T Consensus 264 ~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 264 EWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccC
Confidence 45667777666655554 47789999999999999997 8889986 899999998866543
No 79
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.96 E-value=5.9e-09 Score=82.32 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHH-HhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhccc
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYA-IQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKN 96 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a-~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (335)
++..+.+.+.+.... +++++||||+|+..+++++ ...+.+|.|++|++|........
T Consensus 40 ~~W~~~l~~~i~~~~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~--------------------- 97 (171)
T PF06821_consen 40 DEWVQALDQAIDAID-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEP--------------------- 97 (171)
T ss_dssp HHHHHHHHHCCHC-T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHC---------------------
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccc---------------------
Confidence 455555555555443 5799999999999999999 77788999999999853210000
Q ss_pred CCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhhhhc
Q psy17711 97 FNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLA 176 (335)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 176 (335)
.. .....+ ... ....+
T Consensus 98 ~~-------------------------~~~~~f----------------------------------~~~-p~~~l---- 113 (171)
T PF06821_consen 98 FP-------------------------PELDGF----------------------------------TPL-PRDPL---- 113 (171)
T ss_dssp CT-------------------------CGGCCC----------------------------------TTS-HCCHH----
T ss_pred hh-------------------------hhcccc----------------------------------ccC-ccccc----
Confidence 00 000000 000 01112
Q ss_pred CCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChH
Q psy17711 177 AHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRAD 227 (335)
Q Consensus 177 i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~ 227 (335)
.+|.++|.+++|+. +.+.++.+++.+. ++++.++++||+.-.+.-.
T Consensus 114 -~~~~~viaS~nDp~vp~~~a~~~A~~l~----a~~~~~~~~GHf~~~~G~~ 160 (171)
T PF06821_consen 114 -PFPSIVIASDNDPYVPFERAQRLAQRLG----AELIILGGGGHFNAASGFG 160 (171)
T ss_dssp -HCCEEEEEETTBSSS-HHHHHHHHHHHT-----EEEEETS-TTSSGGGTHS
T ss_pred -CCCeEEEEcCCCCccCHHHHHHHHHHcC----CCeEECCCCCCcccccCCC
Confidence 67889999999999 9999999999995 5899999999998776433
No 80
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.93 E-value=9e-09 Score=98.20 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=47.4
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCccccc-cChHHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYA-DRADVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~-e~p~~~~~~I~~fl~~ 239 (335)
++|+|+|||++|.. +.+.+..+.+.+.. +..++++++|+.||.+.- ++-..+.+.+.+|+.+
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~ 615 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKR 615 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH
Confidence 99999999999977 88888888887764 467999999999999886 3334444444455443
No 81
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.89 E-value=5.4e-09 Score=85.99 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=31.7
Q ss_pred CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQ 72 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~ 72 (335)
+++.|+|.|.||-+|+.+|..+| .|+++|.++|.....
T Consensus 22 ~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~ 59 (213)
T PF08840_consen 22 DKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVF 59 (213)
T ss_dssp SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--
T ss_pred CCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEe
Confidence 58999999999999999999999 699999999865433
No 82
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.89 E-value=2.6e-08 Score=84.22 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCcEEEEEechhHHHHHHHHHhCC-----chhceeeEecCCCCCCCC
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAIQYP-----DRVKHLILADPWGFPQKS 74 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~~~P-----~~v~~lvli~~~~~~~~~ 74 (335)
+.++|+|+|||.|+.-+++|+.... ..|++.||-+|.......
T Consensus 106 ~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~ 153 (303)
T PF08538_consen 106 GREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAI 153 (303)
T ss_dssp --S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTST
T ss_pred CCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHh
Confidence 3578999999999999999998752 579999999997654443
No 83
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.89 E-value=4.2e-08 Score=78.38 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 15 TVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
...++..+.+.++++....+.+.|||.||||..|..+|.+++ +++ ||++|...
T Consensus 40 ~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~ 92 (187)
T PF05728_consen 40 PFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVR 92 (187)
T ss_pred cCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCC
Confidence 344677788888998888778999999999999999999986 444 89999754
No 84
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.85 E-value=3.3e-08 Score=82.00 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=34.0
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCcccccc
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYAD 224 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e 224 (335)
++|+++++|++|+. +++..+.+.+.+.. ..+.++++++|++|.....
T Consensus 145 ~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~ 193 (218)
T PF01738_consen 145 KAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANP 193 (218)
T ss_dssp -S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTST
T ss_pred CCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCC
Confidence 89999999999998 87777777777732 3569999999999998764
No 85
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.84 E-value=4.6e-08 Score=85.19 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCch-hceeeEecCCCCCCCC
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR-VKHLILADPWGFPQKS 74 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~-v~~lvli~~~~~~~~~ 74 (335)
+.+.+.+..+++..|.+++.++|||.||+++..+++.+|.+ |++++++.+.......
T Consensus 165 e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~ 222 (445)
T COG3243 165 EGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHA 222 (445)
T ss_pred HHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhcccccceeeecchhhccc
Confidence 55556777778888999999999999999999999999987 9999998876544443
No 86
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.84 E-value=7e-08 Score=74.05 Aligned_cols=132 Identities=13% Similarity=0.114 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhccc
Q psy17711 17 ERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKN 96 (335)
Q Consensus 17 ~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (335)
.+|+++.+...+... -++++||+||+|+..+++++......|+|+.|++|+-.......
T Consensus 43 ~~dWi~~l~~~v~a~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~~-------------------- 101 (181)
T COG3545 43 LDDWIARLEKEVNAA-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEIR-------------------- 101 (181)
T ss_pred HHHHHHHHHHHHhcc-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccccc--------------------
Confidence 366666666666665 36799999999999999999988779999999998532111000
Q ss_pred CCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhhhhc
Q psy17711 97 FNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLA 176 (335)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 176 (335)
... ...++.. +..+
T Consensus 102 --------------------------~~~----------------------------------~~tf~~~------p~~~ 115 (181)
T COG3545 102 --------------------------PKH----------------------------------LMTFDPI------PREP 115 (181)
T ss_pred --------------------------hhh----------------------------------ccccCCC------cccc
Confidence 000 0000000 1111
Q ss_pred CCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCcccccc---ChHHHHHHHHHHhhh
Q psy17711 177 AHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYAD---RADVFNKMVNDTCTL 239 (335)
Q Consensus 177 i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e---~p~~~~~~I~~fl~~ 239 (335)
..-|.+++...+|++ +++.++.+++.+++ .++.+..+||+.-.+ .-.+....+..++.+
T Consensus 116 lpfps~vvaSrnDp~~~~~~a~~~a~~wgs----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 116 LPFPSVVVASRNDPYVSYEHAEDLANAWGS----ALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred CCCceeEEEecCCCCCCHHHHHHHHHhccH----hheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 168999999999999 99999999999986 688888889987653 333445566666544
No 87
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.84 E-value=4.2e-08 Score=81.98 Aligned_cols=56 Identities=32% Similarity=0.391 Sum_probs=46.1
Q ss_pred hccHHHHHHHHHHHHHHhCCC-cEEEEEechhHHHHHHHHHhC---CchhceeeEecCCC
Q psy17711 14 ETVERQLVTSIEEWRKELKLQ-EMILLGHSFGGYLAFAYAIQY---PDRVKHLILADPWG 69 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~lg~~-~~~lvGhS~Gg~ia~~~a~~~---P~~v~~lvli~~~~ 69 (335)
..+++++++...+.+.....+ +++|+|||+||.+|+.+|.+. ...|..++++++..
T Consensus 45 ~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~ 104 (229)
T PF00975_consen 45 PDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPP 104 (229)
T ss_dssp ESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSS
T ss_pred CCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecCCC
Confidence 457799999888888776655 999999999999999999865 34589999999753
No 88
>KOG2565|consensus
Probab=98.82 E-value=1.1e-07 Score=81.18 Aligned_cols=224 Identities=15% Similarity=0.158 Sum_probs=126.4
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccc
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~ 80 (335)
||.|+.+... .++..+.|.-+..+|=++|.+++.+-|.+||+.|+..+|..+|++|.|+-+..+...+....
T Consensus 199 ygwSd~~sk~---GFn~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~~~~s~~s~----- 270 (469)
T KOG2565|consen 199 YGWSDAPSKT---GFNAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMCFVNSPFST----- 270 (469)
T ss_pred cccCcCCccC---CccHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcccccCCcHHH-----
Confidence 6888887632 34457889999999999999999999999999999999999999999998876643332211
Q ss_pred cchHHHHHHhhhhcccCCCC-CcccccCCchhhHHh--------hhCCCcccccCCCCccchhHHHHHHHHhhhcCCChH
Q psy17711 81 SKIPLWARMIGNLYKNFNPL-WPVRFVGPLGQWVVE--------KMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGE 151 (335)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (335)
+. .......+.....+. .......+....... .....-.+.+...+.+.+..+..|+...........
T Consensus 271 --l~-~~~~a~~~~~~~l~sre~~d~~~p~~~~~~~lmeesgYfhiqaTkpdTiGaAl~dsPvGlAaYIleKfstwTn~~ 347 (469)
T KOG2565|consen 271 --LK-LLYYAGFFPGQFLPSREFQDFHFPVGKKFDQLMEESGYFHIQATKPDTIGAALNDSPVGLAAYILEKFSTWTNTE 347 (469)
T ss_pred --HH-HHHHHHhcccccCcchhHHHhhchhHHHHHHHHHhcCceEEecCCcchhhhhhccCchHHHHHHHHHHhhccChh
Confidence 00 001111111111111 111111111110000 011112223334444444445555554433221110
Q ss_pred --------------------------------HHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHH
Q psy17711 152 --------------------------------SAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDK 198 (335)
Q Consensus 152 --------------------------------~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~ 198 (335)
...+.+...+.. ......+...++++|+-+-.+..|.. .++ ..
T Consensus 348 ~r~l~dggL~krFt~D~lltnvmiYwlT~si~ss~r~y~e~~~~--~~r~~~~~r~~v~vPtg~a~f~~el~~~~~--~~ 423 (469)
T KOG2565|consen 348 FRSLPDGGLNKRFTMDELLTNVMIYWLTNSITSSQRFYDESFNQ--RQRDLALDRVQVRVPTGCARFKFELWHTSD--DV 423 (469)
T ss_pred hhhCCCCchheeecHHHHhhhhhhheecCcchhhHHHHHHHHhH--HHHHHHhhccccccchhhhccccchhhCcH--HH
Confidence 000000000000 00112233345588998888888866 333 45
Q ss_pred HHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhch
Q psy17711 199 IKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 199 l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~ 241 (335)
+....++ - .+....+.+|||..+|.|+.+++.+..|++.+.
T Consensus 424 lrdky~n-L-~~~s~~~~GGhFaalE~p~~La~D~~~FV~~~~ 464 (469)
T KOG2565|consen 424 LRDKYPN-L-THSSYHPKGGHFAALEDPKKLAQDFFSFVEKLN 464 (469)
T ss_pred Hhhhccc-c-eeeEeccCCcchhhhhCcHHHHHHHHHHHHHHH
Confidence 6667776 1 445566778999999999999999999998764
No 89
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.78 E-value=7.4e-08 Score=74.88 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
.+|.++|+|+.|.+ +....-.+++..+ .+.+++++++||.+-. -+.+.+.|.+|+.
T Consensus 149 P~~~lvi~g~~Ddvv~l~~~l~~~~~~~----~~~i~i~~a~HFF~gK-l~~l~~~i~~~l~ 205 (210)
T COG2945 149 PSPGLVIQGDADDVVDLVAVLKWQESIK----ITVITIPGADHFFHGK-LIELRDTIADFLE 205 (210)
T ss_pred CCCceeEecChhhhhcHHHHHHhhcCCC----CceEEecCCCceeccc-HHHHHHHHHHHhh
Confidence 78999999999988 7766666666533 5899999999998875 4558889999985
No 90
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=98.76 E-value=3.7e-08 Score=83.42 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHH---HHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWR---KELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll---~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
||.|+..... .+++++++|+..++ ++.+.++++++||||||.+++.+|.++|++++++|+++|..
T Consensus 67 ~G~S~g~~~~----~~~~~~~~Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~ 134 (266)
T TIGR03101 67 CGDSAGDFAA----ARWDVWKEDVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVV 134 (266)
T ss_pred CCCCCCcccc----CCHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCccccceEEEecccc
Confidence 6778654322 24466777776654 45577899999999999999999999999999999999864
No 91
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.67 E-value=4.3e-07 Score=80.24 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 19 QLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~---~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
.+.+.+.+.+..... .++.++|.||||.+|.++|..+++|++++|.++++.
T Consensus 243 ~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~v 296 (411)
T PF06500_consen 243 RLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPV 296 (411)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---
T ss_pred HHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchH
Confidence 455555565655543 589999999999999999999999999999999864
No 92
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.66 E-value=1.2e-06 Score=73.51 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=45.8
Q ss_pred CCCEEEEeeC------CCCC-CCchhHHHHHHhcC-CCceEEEEeCC--CCccccccChHHHHHHHHHHhh
Q psy17711 178 HVPVTVIYGS------RSWV-DNSSGDKIKEARSQ-NSFVQVKSVTG--AGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 178 ~~PvLii~G~------~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~--~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
++.||-|.|. .|.. |...+..+.-.+.+ ....+-.++.| +.|.-..|+|+ +.+.|.+||-
T Consensus 184 ~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~~-V~~~I~~FLw 253 (255)
T PF06028_consen 184 NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENPQ-VDKLIIQFLW 253 (255)
T ss_dssp T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCHH-HHHHHHHHHC
T ss_pred CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCHH-HHHHHHHHhc
Confidence 6889999998 5666 77777777777765 34577777865 68999888886 7789999973
No 93
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.66 E-value=9.7e-07 Score=66.51 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
.++...+.++.+.+...+.++-|+||||-++...|......|++|++++=+
T Consensus 73 ~~~~~~~aql~~~l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYP 123 (213)
T COG3571 73 PEYIVAIAQLRAGLAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYP 123 (213)
T ss_pred HHHHHHHHHHHhcccCCceeeccccccchHHHHHHHhhcCCcceEEEecCc
Confidence 578888888988887789999999999999999998766669999998844
No 94
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.64 E-value=2.1e-07 Score=78.81 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=50.8
Q ss_pred hhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHH-HhcCCCceEEEEeCCCCcccccc----ChH-HHHHHHHHHhhhch
Q psy17711 170 HRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKE-ARSQNSFVQVKSVTGAGHHVYAD----RAD-VFNKMVNDTCTLSD 241 (335)
Q Consensus 170 ~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~-~~~~~~~~~~~~i~~~gH~~~~e----~p~-~~~~~I~~fl~~~~ 241 (335)
..+++| ++|+|+|++.+|++ +++....... ..|+ +.+..-+.+||..++. +|. ...+.|.+|++...
T Consensus 268 ~~L~~I--r~PtLii~A~DDP~~~~~~iP~~~~~~np~---v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 268 PLLPKI--RKPTLIINAKDDPFMPPEVIPKLQEMLNPN---VLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred cccccc--ccceEEEecCCCCCCChhhCCcchhcCCCc---eEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 445555 99999999999999 8777666665 4444 8899999999999987 443 55677788877653
No 95
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.61 E-value=9.3e-07 Score=72.93 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 20 LVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 20 ~~~dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
+.+.+..+.+..++ ++++|+|||+||.+++.++..+|+++.+++.+++..
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 33334444444444 489999999999999999999999999999988754
No 96
>KOG1838|consensus
Probab=98.60 E-value=1.2e-06 Score=76.91 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=47.8
Q ss_pred hhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccC----hHHHHHH-HHHHhhhchh
Q psy17711 169 LHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADR----ADVFNKM-VNDTCTLSDE 242 (335)
Q Consensus 169 ~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~----p~~~~~~-I~~fl~~~~~ 242 (335)
...++.+ ++|+|+|++.+|++ ++. ..-..+...| +++-+++-..+||..++|. +....+. +.+|+.....
T Consensus 315 ~~~v~~I--~VP~L~ina~DDPv~p~~-~ip~~~~~~n-p~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~~ 390 (409)
T KOG1838|consen 315 SNYVDKI--KVPLLCINAADDPVVPEE-AIPIDDIKSN-PNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAIF 390 (409)
T ss_pred hhhcccc--cccEEEEecCCCCCCCcc-cCCHHHHhcC-CcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHHh
Confidence 3455666 99999999999999 543 3334444444 4588888888999999985 2333333 7777776544
No 97
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.58 E-value=2.6e-07 Score=83.18 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHh------CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 18 RQLVTSIEEWRKEL------KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 18 ~~~~~dl~~ll~~l------g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
..+++++.++++.+ ++++++||||||||.+|..++.++|++|.++++++|+.+
T Consensus 97 ~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP 155 (442)
T TIGR03230 97 KLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGP 155 (442)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCC
Confidence 56667777777654 368999999999999999999999999999999999754
No 98
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.55 E-value=1.8e-06 Score=74.41 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=48.4
Q ss_pred CCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccc-cChHHHHHHHHHHhhh
Q psy17711 179 VPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYA-DRADVFNKMVNDTCTL 239 (335)
Q Consensus 179 ~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~I~~fl~~ 239 (335)
-.+.++.+++|.. |......+.+.+|+ +++.+++| ||..-+ -+.+.+.++|.+-+++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v~~Lq~~WPG---sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~R 348 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGVLSLQEIWPG---SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFER 348 (348)
T ss_pred CcEEEEEecCceEechhhcchHHHhCCC---CeEEEecC-CcEEEeeechHHHHHHHHHHhhC
Confidence 4578899999988 88888899999999 99999997 998654 5788899999887653
No 99
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.54 E-value=1.9e-06 Score=71.96 Aligned_cols=109 Identities=20% Similarity=0.233 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhC------CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhh
Q psy17711 18 RQLVTSIEEWRKELK------LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIG 91 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg------~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (335)
.+...|+.+.++.|. .+++.++|+||||.+++.++...| .|++.+..-+........
T Consensus 90 ~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~~~~---------------- 152 (236)
T COG0412 90 AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIADDTA---------------- 152 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCCccc----------------
Confidence 466677777776662 357999999999999999999998 688888876642211110
Q ss_pred hhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhh
Q psy17711 92 NLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHR 171 (335)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (335)
.
T Consensus 153 -------------------------------------------------------------------------------~ 153 (236)
T COG0412 153 -------------------------------------------------------------------------------D 153 (236)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred hhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCC-CceEEEEeCCCCcccccc
Q psy17711 172 VDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQN-SFVQVKSVTGAGHHVYAD 224 (335)
Q Consensus 172 l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~-~~~~~~~i~~~gH~~~~e 224 (335)
..++ ++|+|+.+|+.|.. +....+.+.+.+... .++++.+++++.|..+.+
T Consensus 154 ~~~~--~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~ 206 (236)
T COG0412 154 APKI--KVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFAND 206 (236)
T ss_pred cccc--cCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccC
Confidence 1112 89999999999988 888888888877762 268899999988988854
No 100
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.52 E-value=4.1e-06 Score=73.09 Aligned_cols=160 Identities=19% Similarity=0.105 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHh------CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhh
Q psy17711 18 RQLVTSIEEWRKEL------KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIG 91 (335)
Q Consensus 18 ~~~~~dl~~ll~~l------g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (335)
..+..|....++.+ +.+++.+.|.|.||.+++.+|+..| +|++++...|..... ........
T Consensus 153 r~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~-----------~~~~~~~~ 220 (320)
T PF05448_consen 153 RRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDF-----------RRALELRA 220 (320)
T ss_dssp HHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSH-----------HHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccch-----------hhhhhcCC
Confidence 44545555555443 1257999999999999999999987 599999988854321 11110000
Q ss_pred hhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhh
Q psy17711 92 NLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHR 171 (335)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (335)
...+. ..+..|..............+..+ ..++.....++
T Consensus 221 ----~~~~y---------------------------------~~~~~~~~~~d~~~~~~~~v~~~L---~Y~D~~nfA~r 260 (320)
T PF05448_consen 221 ----DEGPY---------------------------------PEIRRYFRWRDPHHEREPEVFETL---SYFDAVNFARR 260 (320)
T ss_dssp -----STTT---------------------------------HHHHHHHHHHSCTHCHHHHHHHHH---HTT-HHHHGGG
T ss_pred ----ccccH---------------------------------HHHHHHHhccCCCcccHHHHHHHH---hhhhHHHHHHH
Confidence 00000 002222221111111111111111 11222223333
Q ss_pred hhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 172 VDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 172 l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
+ +||+++-.|-.|.+ ||...-...+.++. + .++.+++..||....+. -.+...+||.+
T Consensus 261 i-----~~pvl~~~gl~D~~cPP~t~fA~yN~i~~-~-K~l~vyp~~~He~~~~~---~~~~~~~~l~~ 319 (320)
T PF05448_consen 261 I-----KCPVLFSVGLQDPVCPPSTQFAAYNAIPG-P-KELVVYPEYGHEYGPEF---QEDKQLNFLKE 319 (320)
T ss_dssp -------SEEEEEEETT-SSS-HHHHHHHHCC--S-S-EEEEEETT--SSTTHHH---HHHHHHHHHHH
T ss_pred c-----CCCEEEEEecCCCCCCchhHHHHHhccCC-C-eeEEeccCcCCCchhhH---HHHHHHHHHhc
Confidence 3 99999999999999 99988888888876 3 89999999999665432 25566677653
No 101
>PLN00021 chlorophyllase
Probab=98.50 E-value=1.6e-06 Score=75.50 Aligned_cols=37 Identities=41% Similarity=0.543 Sum_probs=32.4
Q ss_pred CCCcEEEEEechhHHHHHHHHHhCCc-----hhceeeEecCC
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAIQYPD-----RVKHLILADPW 68 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~~~P~-----~v~~lvli~~~ 68 (335)
+.++++++||||||.+++.+|..+|+ ++.++|+++|.
T Consensus 124 d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv 165 (313)
T PLN00021 124 DLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPV 165 (313)
T ss_pred ChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccc
Confidence 34689999999999999999999874 68899999885
No 102
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.45 E-value=1.5e-06 Score=74.11 Aligned_cols=61 Identities=30% Similarity=0.325 Sum_probs=48.2
Q ss_pred ChhccHHHHHHHHHHHHHHhC------CCcEEEEEechhHHHHHHHHHhCC---chhceeeEecCCCCCC
Q psy17711 12 DPETVERQLVTSIEEWRKELK------LQEMILLGHSFGGYLAFAYAIQYP---DRVKHLILADPWGFPQ 72 (335)
Q Consensus 12 ~~~~~~~~~~~dl~~ll~~lg------~~~~~lvGhS~Gg~ia~~~a~~~P---~~v~~lvli~~~~~~~ 72 (335)
...+++++.++.-.++++.+- -.+++|+|||.|+.++++...++| .+|.+++++-|.....
T Consensus 56 ~~~~sL~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~i 125 (266)
T PF10230_consen 56 GRLFSLQDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDI 125 (266)
T ss_pred CCccCHHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccc
Confidence 345677777776666665542 357999999999999999999999 7899999999875443
No 103
>PRK10162 acetyl esterase; Provisional
Probab=98.43 E-value=1.4e-05 Score=70.11 Aligned_cols=61 Identities=11% Similarity=-0.049 Sum_probs=40.8
Q ss_pred CCCEEEEeeCCCCCCCchhHHHHHHhcC-CCceEEEEeCCCCcccccc-----ChHHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWVDNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYAD-----RADVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e-----~p~~~~~~I~~fl~~ 239 (335)
-.|+++++|+.|.+.. ..+.+.+.+.. +..+++++++|..|..... ...+..+.+.+|+.+
T Consensus 248 lPp~~i~~g~~D~L~d-e~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~ 314 (318)
T PRK10162 248 VPPCFIAGAEFDPLLD-DSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTA 314 (318)
T ss_pred CCCeEEEecCCCcCcC-hHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHH
Confidence 3799999999998832 34555555543 3458999999999976532 233445555566654
No 104
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.40 E-value=5.2e-06 Score=65.37 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHH----hCCCcEEEEEechhHHHHHHHHHhCCc----hhceeeEecCC
Q psy17711 17 ERQLVTSIEEWRKE----LKLQEMILLGHSFGGYLAFAYAIQYPD----RVKHLILADPW 68 (335)
Q Consensus 17 ~~~~~~dl~~ll~~----lg~~~~~lvGhS~Gg~ia~~~a~~~P~----~v~~lvli~~~ 68 (335)
.++.+.|+..++++ .+.++++|+|+|+|+-+.-....+.|. +|..++|++|.
T Consensus 47 P~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~ 106 (192)
T PF06057_consen 47 PEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPS 106 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccC
Confidence 35666666666654 477899999999999998888888874 78999999984
No 105
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.34 E-value=2.9e-05 Score=75.71 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=47.9
Q ss_pred hhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCccccc-cChHHHHHHHHHHhhhc
Q psy17711 167 PMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYA-DRADVFNKMVNDTCTLS 240 (335)
Q Consensus 167 ~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~-e~p~~~~~~I~~fl~~~ 240 (335)
.....+..+ ++|+|+|+|..|.. ++.....+.+.+.. ....++...+ .+|.... ..+.++.+.+..|++..
T Consensus 446 n~~~~~~kI--kvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~~ 519 (767)
T PRK05371 446 NYLKDADKI--KASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTHK 519 (767)
T ss_pred CHhhHhhCC--CCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHhc
Confidence 334445555 99999999999988 77777666666643 1235665555 5896543 35567777888888654
No 106
>KOG2551|consensus
Probab=98.34 E-value=9e-06 Score=65.02 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=50.0
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhchhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSDEK 243 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~~~ 243 (335)
++|.|-|.|+.|.+ +...++.+++.+++ .++..-+ +||++.... .+.+.|.+|++...+.
T Consensus 163 ~~PSLHi~G~~D~iv~~~~s~~L~~~~~~---a~vl~Hp-ggH~VP~~~--~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 163 STPSLHIFGETDTIVPSERSEQLAESFKD---ATVLEHP-GGHIVPNKA--KYKEKIADFIQSFLQE 223 (230)
T ss_pred CCCeeEEecccceeecchHHHHHHHhcCC---CeEEecC-CCccCCCch--HHHHHHHHHHHHHHHh
Confidence 89999999999999 99999999999999 6666666 599999765 5667888888876543
No 107
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.33 E-value=1.5e-06 Score=74.46 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHh------CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 17 ERQLVTSIEEWRKEL------KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 17 ~~~~~~dl~~ll~~l------g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
.+.+++++..+++.+ +.+++++|||||||.+|..++.++|++|.++++++|+.+
T Consensus 89 ~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 89 TRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 344455555555543 346899999999999999999999999999999998754
No 108
>KOG3043|consensus
Probab=98.30 E-value=3.3e-06 Score=67.50 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCC--ceEEEEeCCCCccccc-----cChH---HHHHHHHHHhhhch
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNS--FVQVKSVTGAGHHVYA-----DRAD---VFNKMVNDTCTLSD 241 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~--~~~~~~i~~~gH~~~~-----e~p~---~~~~~I~~fl~~~~ 241 (335)
++|+|++.|+.|.+ |++....+.+.+.+.+ ..++.+++|.+|-.+. +.|+ .+.+....|+.++.
T Consensus 164 k~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~ 238 (242)
T KOG3043|consen 164 KAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFK 238 (242)
T ss_pred CCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHH
Confidence 89999999999999 9999999998887622 2579999999998874 2343 34444555555443
No 109
>PRK10115 protease 2; Provisional
Probab=98.29 E-value=1.1e-05 Score=77.89 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 16 VERQLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~---~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
+++|+++.+..+++. |. +++.+.|.|.||.++...+.++|++++++|...|.
T Consensus 504 ~~~D~~a~~~~Lv~~-g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~ 558 (686)
T PRK10115 504 TFNDYLDACDALLKL-GYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558 (686)
T ss_pred cHHHHHHHHHHHHHc-CCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCc
Confidence 457777777777755 43 57999999999999999999999999999998884
No 110
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.28 E-value=3.7e-05 Score=70.75 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHH-------hCCCcEEEEEechhHHHHHHHHHhCC----------chhceee
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKE-------LKLQEMILLGHSFGGYLAFAYAIQYP----------DRVKHLI 63 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~-------lg~~~~~lvGhS~Gg~ia~~~a~~~P----------~~v~~lv 63 (335)
+|.|-..... ...+.++.++|+.+++.. ++..+++|+|||+||.++..+|.+.- -.++|++
T Consensus 133 ~G~S~~~~~~--~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~ 210 (462)
T PTZ00472 133 VGFSYADKAD--YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLA 210 (462)
T ss_pred cCcccCCCCC--CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEE
Confidence 3666543221 223447888888888874 34479999999999999988887631 2478898
Q ss_pred EecCCCCC
Q psy17711 64 LADPWGFP 71 (335)
Q Consensus 64 li~~~~~~ 71 (335)
+-++...+
T Consensus 211 IGNg~~dp 218 (462)
T PTZ00472 211 VGNGLTDP 218 (462)
T ss_pred EeccccCh
Confidence 88876543
No 111
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.23 E-value=4.4e-06 Score=75.73 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCch----hceeeEecCCC
Q psy17711 17 ERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR----VKHLILADPWG 69 (335)
Q Consensus 17 ~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~----v~~lvli~~~~ 69 (335)
++++.+.+.++.++.+.++++|+||||||.++..++..+|+. |+++|.++++.
T Consensus 145 ~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 145 MDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCC
Confidence 455666666666677888999999999999999999999864 78899998753
No 112
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.22 E-value=9.3e-06 Score=66.83 Aligned_cols=55 Identities=27% Similarity=0.502 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHHH-----hCCCcEEEEEechhHHHHHHHHHhCCc----hhceeeEecCCC
Q psy17711 15 TVERQLVTSIEEWRKE-----LKLQEMILLGHSFGGYLAFAYAIQYPD----RVKHLILADPWG 69 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~-----lg~~~~~lvGhS~Gg~ia~~~a~~~P~----~v~~lvli~~~~ 69 (335)
..++|..+.+..++++ .+.++++|+|+|.||.+++.++....+ .++++++++|..
T Consensus 47 ~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (211)
T PF07859_consen 47 AALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWT 110 (211)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHS
T ss_pred ccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccc
Confidence 3445666666666665 344689999999999999999986544 489999999953
No 113
>PRK04940 hypothetical protein; Provisional
Probab=98.21 E-value=9.1e-05 Score=58.24 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHh---C-CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCC
Q psy17711 18 RQLVTSIEEWRKEL---K-LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFP 71 (335)
Q Consensus 18 ~~~~~dl~~ll~~l---g-~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~ 71 (335)
.+..+.+.++++.+ + .+++.|||+|+||..|..+|.++. + ..|++||...+
T Consensus 40 ~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P 94 (180)
T PRK04940 40 KHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFP 94 (180)
T ss_pred HHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCCh
Confidence 44444555555432 1 157999999999999999999986 3 67888997544
No 114
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.15 E-value=5.4e-05 Score=62.13 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 20 LVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 20 ~~~dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
+++-+..+..+.++ +++++.|+|.||+.+..+++.+|+.+.++..+++...
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~ 133 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPY 133 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccc
Confidence 44445555666666 4799999999999999999999999999998887543
No 115
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.15 E-value=1.1e-05 Score=66.48 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccCh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRA 226 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p 226 (335)
++|+|.|+|.+|.+ +++..+.+.+.+.+ . .+++..++ ||.+....+
T Consensus 161 ~iPtlHv~G~~D~~~~~~~s~~L~~~~~~-~-~~v~~h~g-GH~vP~~~~ 207 (212)
T PF03959_consen 161 SIPTLHVIGENDPVVPPERSEALAEMFDP-D-ARVIEHDG-GHHVPRKKE 207 (212)
T ss_dssp --EEEEEEETT-SSS-HHHHHHHHHHHHH-H-EEEEEESS-SSS----HH
T ss_pred CCCeEEEEeCCCCCcchHHHHHHHHhccC-C-cEEEEECC-CCcCcCChh
Confidence 89999999999999 88888999999877 3 67777775 999887543
No 116
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.08 E-value=5.3e-05 Score=79.32 Aligned_cols=55 Identities=29% Similarity=0.280 Sum_probs=47.9
Q ss_pred hccHHHHHHHHHHHHHHhCC-CcEEEEEechhHHHHHHHHHh---CCchhceeeEecCC
Q psy17711 14 ETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQ---YPDRVKHLILADPW 68 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~lg~-~~~~lvGhS~Gg~ia~~~a~~---~P~~v~~lvli~~~ 68 (335)
.++++++++++.+.++.+.. .+++++||||||.++..+|.+ .|+++..++++++.
T Consensus 1112 ~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1112 ATSLDEVCEAHLATLLEQQPHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDTW 1170 (1296)
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecCC
Confidence 46789999999999988754 589999999999999999996 57889999999874
No 117
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.06 E-value=4.4e-05 Score=72.30 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCC-----CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL-----QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~-----~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
||.|+......+ .+.++|+.++++.+.. .++.++|||+||.+++.+|..+|++++++|..++..
T Consensus 64 ~g~S~g~~~~~~-----~~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~ 132 (550)
T TIGR00976 64 RGASEGEFDLLG-----SDEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVW 132 (550)
T ss_pred cccCCCceEecC-----cccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCccc
Confidence 567765432211 3467777777776632 489999999999999999999999999999988753
No 118
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.03 E-value=1.1e-05 Score=72.08 Aligned_cols=36 Identities=47% Similarity=0.628 Sum_probs=26.6
Q ss_pred CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 33 LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 33 ~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
.+++.++|||+||..++..+... .++++.|++||+.
T Consensus 227 ~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~LD~W~ 262 (379)
T PF03403_consen 227 LSRIGLAGHSFGGATALQALRQD-TRFKAGILLDPWM 262 (379)
T ss_dssp EEEEEEEEETHHHHHHHHHHHH--TT--EEEEES---
T ss_pred hhheeeeecCchHHHHHHHHhhc-cCcceEEEeCCcc
Confidence 35799999999999999888776 5799999999954
No 119
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.02 E-value=7.4e-05 Score=67.27 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=43.4
Q ss_pred hccHHHHHHHHHHHHHHh-----CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 14 ETVERQLVTSIEEWRKEL-----KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~l-----g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
..+++|.+.....+++.. +..+++|+|.+-||+.++.+|+.+|+.+.-+|+.+++.
T Consensus 115 gQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPl 175 (581)
T PF11339_consen 115 GQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPL 175 (581)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCc
Confidence 345567666666666544 22489999999999999999999999988888876544
No 120
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.01 E-value=6e-05 Score=60.71 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=50.7
Q ss_pred hhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCC----CccccccCh-HHHHHHHHHHh
Q psy17711 172 VDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGA----GHHVYADRA-DVFNKMVNDTC 237 (335)
Q Consensus 172 l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~----gH~~~~e~p-~~~~~~I~~fl 237 (335)
.+.+ ++|+..+...+|+- |+...+.+.+..++ ...+.+.++.+ ||+-.+-+| |...+.+.+|+
T Consensus 212 yaaV--rtPi~~~~~~DD~w~P~As~d~f~~~y~n-Apl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 212 YAAV--RTPITFSRALDDPWAPPASRDAFASFYRN-APLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHh--cCceeeeccCCCCcCCHHHHHHHHHhhhc-CcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 3444 99999999999988 99999999999998 55777777654 999999877 76666666654
No 121
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=0.00045 Score=57.96 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=46.6
Q ss_pred hccHHHHHHHHHHHHHHhC-CCcEEEEEechhHHHHHHHHHhC---CchhceeeEecCCCC
Q psy17711 14 ETVERQLVTSIEEWRKELK-LQEMILLGHSFGGYLAFAYAIQY---PDRVKHLILADPWGF 70 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~lg-~~~~~lvGhS~Gg~ia~~~a~~~---P~~v~~lvli~~~~~ 70 (335)
.-+++++++...+.|.+.. ..+++|+|||+||.+|...|.+. .+.|..++++++...
T Consensus 44 ~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 44 FASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 4467889988777776664 46999999999999999999864 457999999998655
No 122
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=7.6e-05 Score=61.57 Aligned_cols=143 Identities=20% Similarity=0.160 Sum_probs=84.9
Q ss_pred CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhhhcccCCCCCcccccCCchh
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQ 111 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (335)
..+++.+-|.|.||.+++..|+..| +|++++..=|....... +...
T Consensus 174 de~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~df~r-----------~i~~---------------------- 219 (321)
T COG3458 174 DEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLSDFPR-----------AIEL---------------------- 219 (321)
T ss_pred chhheEEeccccCchhhhhhhhcCh-hhhcccccccccccchh-----------heee----------------------
Confidence 3468999999999999999999887 69999887764321110 0000
Q ss_pred hHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhhhhcCCCCEEEEeeCCCCC
Q psy17711 112 WVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV 191 (335)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~ 191 (335)
.....-..+..|.... .+.....+..+ ..++......++ ++|+|+..|-.|.+
T Consensus 220 ----------------~~~~~ydei~~y~k~h---~~~e~~v~~TL---~yfD~~n~A~Ri-----K~pvL~svgL~D~v 272 (321)
T COG3458 220 ----------------ATEGPYDEIQTYFKRH---DPKEAEVFETL---SYFDIVNLAARI-----KVPVLMSVGLMDPV 272 (321)
T ss_pred ----------------cccCcHHHHHHHHHhc---CchHHHHHHHH---hhhhhhhHHHhh-----ccceEEeecccCCC
Confidence 0000000022222221 11111122211 112222333444 99999999999999
Q ss_pred -CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhc
Q psy17711 192 -DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLS 240 (335)
Q Consensus 192 -~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~ 240 (335)
+|...-.+.+.++. + .+..+++--+|.- -|.-..+.+..|+..+
T Consensus 273 cpPstqFA~yN~l~~-~-K~i~iy~~~aHe~---~p~~~~~~~~~~l~~l 317 (321)
T COG3458 273 CPPSTQFAAYNALTT-S-KTIEIYPYFAHEG---GPGFQSRQQVHFLKIL 317 (321)
T ss_pred CCChhhHHHhhcccC-C-ceEEEeecccccc---CcchhHHHHHHHHHhh
Confidence 89888888888876 2 5677777666754 4554555666777654
No 123
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.94 E-value=6.2e-05 Score=66.28 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=52.6
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhchhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSDEK 243 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~~~ 243 (335)
++|.++|.|..|.+ .++....+.+.+++ + ..+..+|+++|.... ..+.+.|..|+..+...
T Consensus 262 ~~PK~ii~atgDeFf~pD~~~~y~d~L~G-~-K~lr~vPN~~H~~~~---~~~~~~l~~f~~~~~~~ 323 (367)
T PF10142_consen 262 TMPKYIINATGDEFFVPDSSNFYYDKLPG-E-KYLRYVPNAGHSLIG---SDVVQSLRAFYNRIQNG 323 (367)
T ss_pred CccEEEEecCCCceeccCchHHHHhhCCC-C-eeEEeCCCCCcccch---HHHHHHHHHHHHHHHcC
Confidence 89999999999999 89999999999997 3 689999999999887 55777888998886543
No 124
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.84 E-value=0.0005 Score=62.35 Aligned_cols=51 Identities=16% Similarity=0.323 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHh-C----CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 18 RQLVTSIEEWRKEL-K----LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 18 ~~~~~dl~~ll~~l-g----~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
+.+++++.-.+++. . -++.+|.|+||||..|+.++.++|+++.+++.+++.
T Consensus 267 ~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs 322 (411)
T PRK10439 267 LAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGS 322 (411)
T ss_pred HHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccc
Confidence 44556666666653 2 246889999999999999999999999999999985
No 125
>KOG2624|consensus
Probab=97.83 E-value=7.7e-05 Score=66.54 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=49.6
Q ss_pred CCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceE-EEEeCCCCccccc---cChHHHHHHHHHHhhhch
Q psy17711 177 AHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQ-VKSVTGAGHHVYA---DRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 177 i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~-~~~i~~~gH~~~~---e~p~~~~~~I~~fl~~~~ 241 (335)
+++|+.+.+|++|.+ .++....+....++ .... .+.+++-.|+-+. +.++++.+.|.+.++...
T Consensus 331 i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~-~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 331 IKVPTALYYGDNDWLADPEDVLILLLVLPN-SVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred cccCEEEEecCCcccCCHHHHHHHHHhccc-ccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 389999999999999 99999988888877 2222 2227888888664 568889888888887654
No 126
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.83 E-value=6.9e-05 Score=62.55 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=41.6
Q ss_pred HHHHHHHH-HHHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 18 RQLVTSIE-EWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 18 ~~~~~dl~-~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
....+.+. .+.++.++ .+++++|.|+||.-++.++.++|+.+.+.+++++.
T Consensus 250 ~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~ 303 (387)
T COG4099 250 IEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGG 303 (387)
T ss_pred HHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCC
Confidence 34455555 34566677 47999999999999999999999999999999974
No 127
>KOG4627|consensus
Probab=97.81 E-value=6.7e-05 Score=59.23 Aligned_cols=44 Identities=7% Similarity=-0.028 Sum_probs=36.5
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCcccccc
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYAD 224 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e 224 (335)
++|+|++.|++|.- -.+..+.+.+.... +++..+++.+|+-.++
T Consensus 207 ~~~ilVv~~~~espklieQnrdf~~q~~~---a~~~~f~n~~hy~I~~ 251 (270)
T KOG4627|consen 207 TVWILVVAAEHESPKLIEQNRDFADQLRK---ASFTLFKNYDHYDIIE 251 (270)
T ss_pred eeeeeEeeecccCcHHHHhhhhHHHHhhh---cceeecCCcchhhHHH
Confidence 89999999999965 55666677777777 8899999999998775
No 128
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.80 E-value=0.00045 Score=56.35 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHH-HHhCCCcEEEEEechhHHHHHHHHHh---CCchhceeeEecCCC
Q psy17711 16 VERQLVTSIEEWR-KELKLQEMILLGHSFGGYLAFAYAIQ---YPDRVKHLILADPWG 69 (335)
Q Consensus 16 ~~~~~~~dl~~ll-~~lg~~~~~lvGhS~Gg~ia~~~a~~---~P~~v~~lvli~~~~ 69 (335)
+++++++.+...+ +..+..+++++|||+||.++...+.. .++.+.+++++++..
T Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~~~~ 102 (212)
T smart00824 45 SADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLDTYP 102 (212)
T ss_pred CHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEccCC
Confidence 3456666554443 44456789999999999999999886 456799999998744
No 129
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=97.79 E-value=0.001 Score=54.30 Aligned_cols=180 Identities=12% Similarity=0.076 Sum_probs=81.4
Q ss_pred CCCCCCCCCCChhccHHHHHHHHHHHHHHh---CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcc
Q psy17711 2 GRSSRPRFSTDPETVERQLVTSIEEWRKEL---KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQ 78 (335)
Q Consensus 2 G~S~~~~~~~~~~~~~~~~~~dl~~ll~~l---g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~ 78 (335)
|.|+..-. .+++....+++..+++.+ |.+++-|+.-|+.|-+|+..|++- .+.-+|..-+...
T Consensus 70 GlSsG~I~----eftms~g~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i--~lsfLitaVGVVn-------- 135 (294)
T PF02273_consen 70 GLSSGDIN----EFTMSIGKASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI--NLSFLITAVGVVN-------- 135 (294)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS----SEEEEES--S---------
T ss_pred cCCCCChh----hcchHHhHHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc--CcceEEEEeeeee--------
Confidence 66766542 455567777777776655 778999999999999999999954 3666666654321
Q ss_pred cccchHHHHHHhhhhcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhh
Q psy17711 79 KASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLT 158 (335)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (335)
....+......- ... ......... ... ....-+ .+.|+.++....
T Consensus 136 -------lr~TLe~al~~D----yl~-------~~i~~lp~d-ldf--eGh~l~---~~vFv~dc~e~~----------- 180 (294)
T PF02273_consen 136 -------LRDTLEKALGYD----YLQ-------LPIEQLPED-LDF--EGHNLG---AEVFVTDCFEHG----------- 180 (294)
T ss_dssp -------HHHHHHHHHSS-----GGG-------S-GGG--SE-EEE--TTEEEE---HHHHHHHHHHTT-----------
T ss_pred -------HHHHHHHHhccc----hhh-------cchhhCCCc-ccc--cccccc---hHHHHHHHHHcC-----------
Confidence 111111111100 000 000000000 000 000001 223333332211
Q ss_pred hccCCccchhhhhhhhhcCCCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHh
Q psy17711 159 EGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTC 237 (335)
Q Consensus 159 ~~~~~~~~~~~~~l~~i~i~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl 237 (335)
.-+......+++.+ ++|++.+++++|.. .+.....+.+.++. ..+++..++|++|-+. |+|- .++.|.
T Consensus 181 ---w~~l~ST~~~~k~l--~iP~iaF~A~~D~WV~q~eV~~~~~~~~s-~~~klysl~Gs~HdL~-enl~----vlrnfy 249 (294)
T PF02273_consen 181 ---WDDLDSTINDMKRL--SIPFIAFTANDDDWVKQSEVEELLDNINS-NKCKLYSLPGSSHDLG-ENLV----VLRNFY 249 (294)
T ss_dssp ----SSHHHHHHHHTT----S-EEEEEETT-TTS-HHHHHHHHTT-TT---EEEEEETT-SS-TT-SSHH----HHHHHH
T ss_pred ---CccchhHHHHHhhC--CCCEEEEEeCCCccccHHHHHHHHHhcCC-CceeEEEecCccchhh-hChH----HHHHHH
Confidence 11112234445555 99999999999855 77777777777766 6689999999999765 3454 345555
Q ss_pred hhch
Q psy17711 238 TLSD 241 (335)
Q Consensus 238 ~~~~ 241 (335)
+.+.
T Consensus 250 ~svt 253 (294)
T PF02273_consen 250 QSVT 253 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 130
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=97.79 E-value=7e-05 Score=53.84 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=52.9
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
..|+|++.++.|++ |.+.++.+.+.+++ ++++.+++.||..+...-.-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~---s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG---SRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC---ceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 69999999999999 99999999999998 8999999999999975556678889899874
No 131
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.77 E-value=8.1e-05 Score=61.72 Aligned_cols=52 Identities=27% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHh-----CCCcEEEEEechhHHHHHHHHHhCC---chhceeeEecCCCC
Q psy17711 19 QLVTSIEEWRKEL-----KLQEMILLGHSFGGYLAFAYAIQYP---DRVKHLILADPWGF 70 (335)
Q Consensus 19 ~~~~dl~~ll~~l-----g~~~~~lvGhS~Gg~ia~~~a~~~P---~~v~~lvli~~~~~ 70 (335)
-+.+.+..+++.+ +.+++++|||||||.+|-.++...+ +.|+.+|.++++..
T Consensus 65 ~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 65 FLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred HHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 3444555555655 4578999999999999988887643 57999999997543
No 132
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.72 E-value=0.0012 Score=55.63 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=51.2
Q ss_pred CCCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCcccccc-ChHHHHHHHHHHh
Q psy17711 177 AHVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYAD-RADVFNKMVNDTC 237 (335)
Q Consensus 177 i~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e-~p~~~~~~I~~fl 237 (335)
.++|-|+++++.|.+ +.+..++..+.... +.+++...++++.|..|+. +|+++.+.+.+|+
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 379999999999999 88877777665544 3458889999999999984 9999999999885
No 133
>KOG3975|consensus
Probab=97.71 E-value=0.0014 Score=53.49 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=50.6
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTC 237 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl 237 (335)
.+-+.+.+|..|.. |.+....+.+.+|. .++++-+ +++-|.....+.+..++.+.+.+
T Consensus 242 ~d~l~Fyygt~DgW~p~~~~d~~kdd~~e-ed~~Lde-dki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVPSHYYDYYKDDVPE-EDLKLDE-DKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred CcEEEEEccCCCCCcchHHHHHHhhhcch-hceeecc-ccCCcceeecccHHHHHHHHHhh
Confidence 57789999999977 98999999999998 7777777 88999999999999998887765
No 134
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.65 E-value=0.001 Score=54.53 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=36.8
Q ss_pred HHHHHHhCCCcEEEEEechhHHHHHHHHHhCCc-----hhceeeEecCCCC
Q psy17711 25 EEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD-----RVKHLILADPWGF 70 (335)
Q Consensus 25 ~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~-----~v~~lvli~~~~~ 70 (335)
..|-++.+++++.+|||||||.-...|+..+.. .++.+|.++++..
T Consensus 127 syL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 127 SYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 334456688999999999999999999987632 4899999987644
No 135
>KOG1551|consensus
Probab=97.64 E-value=0.00047 Score=56.69 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=49.0
Q ss_pred EEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCcccc-ccChHHHHHHHHHHhhhchh
Q psy17711 181 VTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVY-ADRADVFNKMVNDTCTLSDE 242 (335)
Q Consensus 181 vLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~I~~fl~~~~~ 242 (335)
+.++.+++|.. +......+.+.+|+ +++..+++ ||... +-+-+.+.+.|.+-|++.++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg---~eVr~~eg-GHVsayl~k~dlfRR~I~d~L~R~~k 368 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPG---CEVRYLEG-GHVSAYLFKQDLFRRAIVDGLDRLDK 368 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCC---CEEEEeec-CceeeeehhchHHHHHHHHHHHhhhh
Confidence 56777888877 88889999999999 99999994 99864 45889999999999998764
No 136
>KOG3253|consensus
Probab=97.62 E-value=0.0002 Score=65.36 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=48.8
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccC---------hHHHHHHHHHHhhhch
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADR---------ADVFNKMVNDTCTLSD 241 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~---------p~~~~~~I~~fl~~~~ 241 (335)
+.|+|++.|.+|.. ++...+.+.+.+.. . .+++++.+++|.+-.-. ..++...+.++|.++-
T Consensus 304 k~PVLFV~Gsnd~mcspn~ME~vreKMqA-~-~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~efv 375 (784)
T KOG3253|consen 304 KQPVLFVIGSNDHMCSPNSMEEVREKMQA-E-VELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKEFV 375 (784)
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHhhc-c-ceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHHHH
Confidence 89999999999999 89999999988875 3 78999999999886532 3556666666665543
No 137
>KOG2112|consensus
Probab=97.53 E-value=0.0011 Score=52.78 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHh---CC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 16 VERQLVTSIEEWRKEL---KL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~l---g~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
.+...++.+..+++.. |+ .++.+-|.|+||.+++..+..+|..+.+++-..+
T Consensus 70 ~~~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~ 126 (206)
T KOG2112|consen 70 GLHRAADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSG 126 (206)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeecccc
Confidence 3456666777777654 44 4789999999999999999999887877776665
No 138
>KOG1553|consensus
Probab=97.46 E-value=0.00035 Score=59.58 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHH-HHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEE-WRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~-ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
|+.|...+.+... ...++.+.+ .+..||. +.+++.|||.||..+..+|..+|+ |+++||-++
T Consensus 279 FagSTG~P~p~n~----~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAt 343 (517)
T KOG1553|consen 279 FAGSTGLPYPVNT----LNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDAT 343 (517)
T ss_pred ccccCCCCCcccc----hHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecc
Confidence 3556555433222 233444444 4677776 579999999999999999999998 999998765
No 139
>KOG1515|consensus
Probab=97.45 E-value=0.0078 Score=52.75 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHH----h--CCCcEEEEEechhHHHHHHHHHhC------CchhceeeEecCCCCCCCC
Q psy17711 18 RQLVTSIEEWRKE----L--KLQEMILLGHSFGGYLAFAYAIQY------PDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 18 ~~~~~dl~~ll~~----l--g~~~~~lvGhS~Gg~ia~~~a~~~------P~~v~~lvli~~~~~~~~~ 74 (335)
+|-.+.+..+.++ . +.++++|+|-|.||-+|..+|.+. +-++++.|++-|.......
T Consensus 144 ~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~ 212 (336)
T KOG1515|consen 144 DDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDR 212 (336)
T ss_pred hHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCC
Confidence 6666666666664 2 446899999999999999888753 3579999999997654444
No 140
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.43 E-value=0.0044 Score=54.36 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHHHHH---hCC--CcEEEEEechhHHHHHHHHHhCCc----hhceeeEecCCCC
Q psy17711 15 TVERQLVTSIEEWRKE---LKL--QEMILLGHSFGGYLAFAYAIQYPD----RVKHLILADPWGF 70 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~---lg~--~~~~lvGhS~Gg~ia~~~a~~~P~----~v~~lvli~~~~~ 70 (335)
..++|..+.+..+.++ +|. +++.++|+|.||.+++.++..-.+ ...+.+++.|...
T Consensus 128 ~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d 192 (312)
T COG0657 128 AALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLD 192 (312)
T ss_pred chHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccC
Confidence 3445655555555544 344 679999999999999999986543 4688888888643
No 141
>KOG2100|consensus
Probab=97.43 E-value=0.0013 Score=64.16 Aligned_cols=151 Identities=11% Similarity=0.114 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhcee-eEecCCCCCCCCCCcccccchHHHHHHhhhh
Q psy17711 17 ERQLVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHL-ILADPWGFPQKSIDPQKASKIPLWARMIGNL 93 (335)
Q Consensus 17 ~~~~~~dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~l-vli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (335)
++|....+..+++..-+ +++.+.|+|.||.++...+...|+.+-+. +.++|.....-....
T Consensus 589 v~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~---------------- 652 (755)
T KOG2100|consen 589 VKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDST---------------- 652 (755)
T ss_pred hHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeeccc----------------
Confidence 35666666666665533 58999999999999999999998555555 888986432111000
Q ss_pred cccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhhh
Q psy17711 94 YKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVD 173 (335)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (335)
...++...-..+. ..|.. ......+.
T Consensus 653 ---------------------------~terymg~p~~~~---~~y~e------------------------~~~~~~~~ 678 (755)
T KOG2100|consen 653 ---------------------------YTERYMGLPSEND---KGYEE------------------------SSVSSPAN 678 (755)
T ss_pred ---------------------------ccHhhcCCCcccc---chhhh------------------------ccccchhh
Confidence 0000000000000 00000 00112222
Q ss_pred hhcCCCCE-EEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCccccccC-hHHHHHHHHHHhhh
Q psy17711 174 QLAAHVPV-TVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYADR-ADVFNKMVNDTCTL 239 (335)
Q Consensus 174 ~i~i~~Pv-Lii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e~-p~~~~~~I~~fl~~ 239 (335)
.+ +.|. |++||+.|.. .......+.+.+.. +-..++.++|+.+|.+-.-. -..+...+..|+..
T Consensus 679 ~~--~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~ 746 (755)
T KOG2100|consen 679 NI--KTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRD 746 (755)
T ss_pred hh--ccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHH
Confidence 22 4444 9999999966 66766777766554 33489999999999988744 24566677788773
No 142
>KOG3847|consensus
Probab=97.41 E-value=0.00043 Score=58.34 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhh
Q psy17711 178 HVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCT 238 (335)
Q Consensus 178 ~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~ 238 (335)
+-|+++|.- .|.-..+....+.+..++...-.++++.|+=|..+-+-|=.+-+.|..++.
T Consensus 287 rqP~~finv-~~fQ~~en~~vmKki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~ 346 (399)
T KOG3847|consen 287 RQPTLFINV-EDFQWNENLLVMKKIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFK 346 (399)
T ss_pred cCCeEEEEc-ccccchhHHHHHHhhhCCCccceEEEEccceecccccCccccHHHHHHHhc
Confidence 789999983 333366777777777765455688999999999999888877777777775
No 143
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=97.40 E-value=0.0014 Score=56.27 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHh---CC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 19 QLVTSIEEWRKEL---KL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 19 ~~~~dl~~ll~~l---g~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
+-++|..++++.+ .+ .+|-++|.|++|..++..|+..|..+++++...+...
T Consensus 81 ~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d 137 (272)
T PF02129_consen 81 NEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSD 137 (272)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SB
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCc
Confidence 3455555555544 33 3799999999999999999988888999999876543
No 144
>KOG4840|consensus
Probab=97.36 E-value=0.0017 Score=52.13 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHHHHHhCC----CcEEEEEechhHHHHHHHHH--hCCchhceeeEecCCCC
Q psy17711 15 TVERQLVTSIEEWRKELKL----QEMILLGHSFGGYLAFAYAI--QYPDRVKHLILADPWGF 70 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~lg~----~~~~lvGhS~Gg~ia~~~a~--~~P~~v~~lvli~~~~~ 70 (335)
.++++-++|+.++++|++. ..++|+|||.|+.-.+.|.. ..|..|++.|+.+|...
T Consensus 84 ~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSD 145 (299)
T KOG4840|consen 84 FSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSD 145 (299)
T ss_pred ccccccHHHHHHHHHHhhccCcccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccch
Confidence 3567889999999998865 37999999999999998884 35778999999998653
No 145
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=97.32 E-value=0.00026 Score=61.19 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=36.8
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHh-cCC-CceEEEEeCCCCccccc
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEAR-SQN-SFVQVKSVTGAGHHVYA 223 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~-~~~-~~~~~~~i~~~gH~~~~ 223 (335)
++|+++.+|..|.+ |....+.+.+.+ ..+ .+++++.+++.+|....
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~ 267 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAA 267 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhh
Confidence 79999999999988 877777766554 444 47999999999998653
No 146
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.29 E-value=0.00083 Score=52.19 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHh----CCCcEEEEEechhHHHHHHHHHhCCc----hhceeeEecCCC
Q psy17711 18 RQLVTSIEEWRKEL----KLQEMILLGHSFGGYLAFAYAIQYPD----RVKHLILADPWG 69 (335)
Q Consensus 18 ~~~~~dl~~ll~~l----g~~~~~lvGhS~Gg~ia~~~a~~~P~----~v~~lvli~~~~ 69 (335)
..+.+.+...++.. ...+++++|||+||.+|..++...+. .+..++..+++.
T Consensus 8 ~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~ 67 (153)
T cd00741 8 RSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPR 67 (153)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCc
Confidence 44555555555443 56789999999999999999988764 566777777653
No 147
>KOG2281|consensus
Probab=97.28 E-value=0.0017 Score=60.00 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCCCCcccccchHHHHHHhhh
Q psy17711 16 VERQLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGN 92 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~---~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (335)
-++|.++-+.-+.++.|. +++.+-|||+||.+++....++|+-++..|.-+|... |...
T Consensus 706 E~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~---------------W~~Y--- 767 (867)
T KOG2281|consen 706 EVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTD---------------WRLY--- 767 (867)
T ss_pred eehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCccee---------------eeee---
Confidence 357888888888998864 7899999999999999999999997776665555321 1000
Q ss_pred hcccCCCCCcccccCCchhhHHhhhCCCcccccCCCCccchhHHHHHHHHhhhcCCChHHHHHHhhhccCCccchhhhhh
Q psy17711 93 LYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRV 172 (335)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 172 (335)
...+.+++...-..++ ..|.... . .....++
T Consensus 768 -------------------------DTgYTERYMg~P~~nE---~gY~agS----------V-----------~~~Vekl 798 (867)
T KOG2281|consen 768 -------------------------DTGYTERYMGYPDNNE---HGYGAGS----------V-----------AGHVEKL 798 (867)
T ss_pred -------------------------cccchhhhcCCCccch---hcccchh----------H-----------HHHHhhC
Confidence 0000000100000000 0000000 0 0011222
Q ss_pred hhhcCCCCEEEEeeCCCCC--CCchhHHHHHHhcCCCceEEEEeCCCCccccc-cChHHHHHHHHHHhhh
Q psy17711 173 DQLAAHVPVTVIYGSRSWV--DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYA-DRADVFNKMVNDTCTL 239 (335)
Q Consensus 173 ~~i~i~~PvLii~G~~D~~--~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~I~~fl~~ 239 (335)
++- .-..|++||--|.- -......+...+..++..++.++|+--|.+-. |.-.-+...+..|+++
T Consensus 799 pde--pnRLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 799 PDE--PNRLLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred CCC--CceEEEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 211 34479999999954 45555555555555567999999999999865 4556667778888764
No 148
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.24 E-value=0.0052 Score=51.46 Aligned_cols=36 Identities=44% Similarity=0.621 Sum_probs=32.5
Q ss_pred CCcEEEEEechhHHHHHHHHHhC-----CchhceeeEecCC
Q psy17711 33 LQEMILLGHSFGGYLAFAYAIQY-----PDRVKHLILADPW 68 (335)
Q Consensus 33 ~~~~~lvGhS~Gg~ia~~~a~~~-----P~~v~~lvli~~~ 68 (335)
..++.|.|||-||-+|..++..+ +.+++++++++|.
T Consensus 90 ~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPV 130 (259)
T PF12740_consen 90 FSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPV 130 (259)
T ss_pred ccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccc
Confidence 35899999999999999999988 5689999999995
No 149
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.19 E-value=0.0008 Score=60.74 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHh---CCCcEEEEEechhHHHHHHHHHhCCc------hhceeeEecCCCC
Q psy17711 19 QLVTSIEEWRKEL---KLQEMILLGHSFGGYLAFAYAIQYPD------RVKHLILADPWGF 70 (335)
Q Consensus 19 ~~~~dl~~ll~~l---g~~~~~lvGhS~Gg~ia~~~a~~~P~------~v~~lvli~~~~~ 70 (335)
++...+..+++.. ..++++||||||||.++..+....+. .|+++|.++++..
T Consensus 101 ~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCC
Confidence 5666666666544 34799999999999999999998753 5999999998643
No 150
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=97.19 E-value=0.0013 Score=53.34 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
+.+.++|||+|||-++|..+....| +...|.+++.+.+...
T Consensus 55 ~y~~i~lvAWSmGVw~A~~~l~~~~--~~~aiAINGT~~Pid~ 95 (213)
T PF04301_consen 55 GYREIYLVAWSMGVWAANRVLQGIP--FKRAIAINGTPYPIDD 95 (213)
T ss_pred cCceEEEEEEeHHHHHHHHHhccCC--cceeEEEECCCCCcCC
Confidence 5579999999999999988866554 6777888876665543
No 151
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.16 E-value=0.0011 Score=56.12 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHH-hCCC--cEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 18 RQLVTSIEEWRKE-LKLQ--EMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 18 ~~~~~dl~~ll~~-lg~~--~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
+-+.++|...+++ ++.. +..|.|+||||..|+.++.+||+.+.+++.++|..
T Consensus 96 ~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~ 150 (251)
T PF00756_consen 96 TFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGAL 150 (251)
T ss_dssp HHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEES
T ss_pred eehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccc
Confidence 3455677766654 4442 37999999999999999999999999999999753
No 152
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.13 E-value=0.0012 Score=57.90 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=35.0
Q ss_pred HHHHHHHhCC--CcEEEEEechhHHHHHHHHHhCCc--hhceeeEecCCCCC
Q psy17711 24 IEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPD--RVKHLILADPWGFP 71 (335)
Q Consensus 24 l~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~--~v~~lvli~~~~~~ 71 (335)
|..+.+..++ ++++|||||+||.+|-.++..... +|..++.+||+.+.
T Consensus 138 l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~ 189 (331)
T PF00151_consen 138 LSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPL 189 (331)
T ss_dssp HHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TT
T ss_pred HHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccccc
Confidence 3333334444 689999999999999999998887 99999999997543
No 153
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.02 E-value=0.0019 Score=49.28 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+++.+.+..+++..+..++++.|||+||.+|..++...
T Consensus 48 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 48 DQILDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 46667777777777767899999999999999988864
No 154
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.00 E-value=0.014 Score=48.47 Aligned_cols=37 Identities=43% Similarity=0.594 Sum_probs=31.4
Q ss_pred CCcEEEEEechhHHHHHHHHHhCC--chhceeeEecCCC
Q psy17711 33 LQEMILLGHSFGGYLAFAYAIQYP--DRVKHLILADPWG 69 (335)
Q Consensus 33 ~~~~~lvGhS~Gg~ia~~~a~~~P--~~v~~lvli~~~~ 69 (335)
+.++.++|||.||-.|..+|..+. -++.+||.++|..
T Consensus 119 l~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~ 157 (307)
T PF07224_consen 119 LSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVA 157 (307)
T ss_pred cceEEEeecCCccHHHHHHHhcccccCchhheecccccC
Confidence 358999999999999999999773 2589999999853
No 155
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=96.83 E-value=0.0045 Score=60.06 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHhC----------------CCcEEEEEechhHHHHHHHHHh
Q psy17711 16 VERQLVTSIEEWRKELK----------------LQEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg----------------~~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
.+++++.|+..++..++ ..+++++||||||+++..++..
T Consensus 521 n~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 521 NLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 67899999999998887 2489999999999999999985
No 156
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=96.82 E-value=0.0041 Score=51.08 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
.++++.|..+++..|. ++.||||||||.++-.+....
T Consensus 60 ~~l~~fI~~Vl~~TGa-kVDIVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 60 KQLRAFIDAVLAYTGA-KVDIVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp HHHHHHHHHHHHHHT---EEEEEETCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCC-EEEEEEcCCcCHHHHHHHHHc
Confidence 4677777778888898 999999999999998887644
No 157
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=96.81 E-value=0.029 Score=48.95 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=34.9
Q ss_pred HHHHhCCCcEEEEEechhHHHHHHHHHhCCc-hhceeeEecCC
Q psy17711 27 WRKELKLQEMILLGHSFGGYLAFAYAIQYPD-RVKHLILADPW 68 (335)
Q Consensus 27 ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~-~v~~lvli~~~ 68 (335)
+....+..+++|+||+.|+..+..|....+. .++++|++++.
T Consensus 186 ~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~ 228 (310)
T PF12048_consen 186 FAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAY 228 (310)
T ss_pred HHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCC
Confidence 3344465679999999999999999998874 59999999984
No 158
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.76 E-value=0.0046 Score=51.13 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCC----chhceeeEecCCCCCCC
Q psy17711 21 VTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP----DRVKHLILADPWGFPQK 73 (335)
Q Consensus 21 ~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P----~~v~~lvli~~~~~~~~ 73 (335)
++-+..+++..+ .++++.|||.||.+|...|...+ ++|.+++..+++++...
T Consensus 72 ~~yl~~~~~~~~-~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~~~ 127 (224)
T PF11187_consen 72 LAYLKKIAKKYP-GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFSEE 127 (224)
T ss_pred HHHHHHHHHhCC-CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCChh
Confidence 334444555444 45999999999999999998843 57899999998765543
No 159
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.75 E-value=0.034 Score=52.10 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHHHHh-C-CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 15 TVERQLVTSIEEWRKEL-K-LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~l-g-~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
.++.|+.+....|++.= + .+.++++|-|.||++.-..+...|+.++++|+--|.
T Consensus 506 NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPF 561 (682)
T COG1770 506 NTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPF 561 (682)
T ss_pred ccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCc
Confidence 46688888888887643 2 247999999999999999999999999999987774
No 160
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=96.66 E-value=0.053 Score=48.00 Aligned_cols=62 Identities=31% Similarity=0.385 Sum_probs=48.8
Q ss_pred CChhccHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhC--C---chhceeeEecCCCCCC
Q psy17711 11 TDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY--P---DRVKHLILADPWGFPQ 72 (335)
Q Consensus 11 ~~~~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~--P---~~v~~lvli~~~~~~~ 72 (335)
+.+...+.+.++-...+++..|.+.++|+|-|.||.+++.+.... + -.-+++|+++|+....
T Consensus 172 ~~yPtQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 172 HKYPTQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred CcCchHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 344556678888888999888999999999999999999887642 1 1358999999976554
No 161
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=96.66 E-value=0.0031 Score=55.73 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCC--chhceeeEecCCC
Q psy17711 16 VERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP--DRVKHLILADPWG 69 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P--~~v~~lvli~~~~ 69 (335)
..+++..-+.+++...+.+++.++||||||..+..++..++ .+|+.++.++++-
T Consensus 109 ~~~ql~~~V~~~l~~~ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 109 RGEQLFAYVDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred cHHHHHHHHHHHHhhcCCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 34677778888888889899999999999999999999988 8999999999853
No 162
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=96.63 E-value=0.0052 Score=51.31 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHh----CC-----chhceeeEecCCC
Q psy17711 19 QLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ----YP-----DRVKHLILADPWG 69 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~----~P-----~~v~~lvli~~~~ 69 (335)
.+++-+..+.+..+.++++|++||||+.+.+..... .+ .++..+++++|-.
T Consensus 78 ~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDi 137 (233)
T PF05990_consen 78 ALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDI 137 (233)
T ss_pred HHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCC
Confidence 333334444444467899999999999999887654 22 3688999998843
No 163
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.59 E-value=0.0068 Score=55.82 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=48.8
Q ss_pred CCCCCCCCCC---CChhccHHHHHHHHHHHHHHhC-------CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 1 FGRSSRPRFS---TDPETVERQLVTSIEEWRKELK-------LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 1 hG~S~~~~~~---~~~~~~~~~~~~dl~~ll~~lg-------~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
||.|.+.... .-...+.++..+|+..+++++. -.|++++|-|.||++|..+-.+||+.|.|.+..+++..
T Consensus 70 YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 70 YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 6888753311 1123477888889888887653 13899999999999999999999999999999887654
Q ss_pred C
Q psy17711 71 P 71 (335)
Q Consensus 71 ~ 71 (335)
.
T Consensus 150 a 150 (434)
T PF05577_consen 150 A 150 (434)
T ss_dssp H
T ss_pred e
Confidence 3
No 164
>KOG3101|consensus
Probab=96.49 E-value=0.0015 Score=52.09 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=34.2
Q ss_pred CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQK 73 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~ 73 (335)
.++-|.||||||.=|+..+.+.|.+.+++-..+|...|..
T Consensus 141 ~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~ 180 (283)
T KOG3101|consen 141 LKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPIN 180 (283)
T ss_pred hhcceeccccCCCceEEEEEcCcccccceeccccccCccc
Confidence 4688999999999999999999999999988888654443
No 165
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.33 E-value=0.0076 Score=50.25 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=22.1
Q ss_pred HHHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 28 RKELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 28 l~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
++.....++++.|||+||.+|..++...
T Consensus 122 ~~~~p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 122 LKQYPDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred HhhCCCceEEEEccCHHHHHHHHHHHHH
Confidence 3333446899999999999999988864
No 166
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=96.27 E-value=0.0059 Score=53.28 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=40.1
Q ss_pred CCCEEEEeeCCCCC-C-CchhHHHHHHhcCCCceEEEEeCCCCccccccChHHH
Q psy17711 178 HVPVTVIYGSRSWV-D-NSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVF 229 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~-~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~ 229 (335)
++|++++.|..|.+ | ..........+++ ...-+..++++.|+-+.+.+++.
T Consensus 251 ~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g-~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 251 TDPVLLAAGSADGFAPPVTEQIRPFGYLPG-ALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred ecceeeecccccccCCcccccccccccCCc-chhheeecCCCccccccccCccc
Confidence 89999999999987 4 4445566667777 33468889999999999977665
No 167
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.14 E-value=0.012 Score=49.22 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHH-h--CCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 19 QLVTSIEEWRKE-L--KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 19 ~~~~dl~~ll~~-l--g~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
-+.+.+.-++++ . +-++-.++|||+||.+++.....+|+.+...++++|..
T Consensus 119 fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 119 FLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred HHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 334445555554 2 33568999999999999999999999999999999953
No 168
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=96.07 E-value=0.023 Score=44.90 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCC-----CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCC
Q psy17711 18 RQLVTSIEEWRKELKL-----QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFP 71 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~-----~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~ 71 (335)
+.-+.++..+++.|.. .++.++|||+|+.++-..+...+..++.+|++++++..
T Consensus 88 ~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~g 146 (177)
T PF06259_consen 88 RAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGMG 146 (177)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCCC
Confidence 5666677777766632 37899999999999999988877789999999876654
No 169
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=96.06 E-value=0.01 Score=48.98 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCC--CcEEEEEechhHHHHHHHHH
Q psy17711 18 RQLVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAI 53 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~ 53 (335)
+.+++.|.+.++.... .++.+|||||||.++-.+..
T Consensus 60 ~rL~~eI~~~~~~~~~~~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 60 ERLAEEILEHIKDYESKIRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred HHHHHHHHHhccccccccccceEEEecccHHHHHHHHH
Confidence 3455555555554444 48999999999999865554
No 170
>PLN02162 triacylglycerol lipase
Probab=96.00 E-value=0.021 Score=51.67 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHH
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAI 53 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~ 53 (335)
.++.+.+..++......++++.|||+||.+|..+|.
T Consensus 262 ~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 262 YTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 455566666776666668999999999999999865
No 171
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.016 Score=50.38 Aligned_cols=53 Identities=26% Similarity=0.403 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHh--------CCchhceeeEecCC
Q psy17711 16 VERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ--------YPDRVKHLILADPW 68 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~--------~P~~v~~lvli~~~ 68 (335)
+-+++..-+..+.+..+.++++|++||||.+++++...+ .+.+++-+|+-+|-
T Consensus 173 Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPD 233 (377)
T COG4782 173 SRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPD 233 (377)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCC
Confidence 334444445455555567899999999999999887653 24578888888874
No 172
>PLN02571 triacylglycerol lipase
Probab=95.95 E-value=0.018 Score=51.61 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+++.+++..+++..... ++++.|||+||.+|...|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 56777888888776543 68999999999999998875
No 173
>PLN02454 triacylglycerol lipase
Probab=95.93 E-value=0.02 Score=51.16 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCCc--EEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELKLQE--MILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~--~~lvGhS~Gg~ia~~~a~~ 54 (335)
+++...|..+++.....+ +++.|||+||.+|+..|..
T Consensus 210 ~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 210 SQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 345555666666655444 9999999999999999865
No 174
>PLN02606 palmitoyl-protein thioesterase
Probab=95.92 E-value=0.5 Score=40.65 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=31.8
Q ss_pred CcEEEEEechhHHHHHHHHHhCCc--hhceeeEecCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPD--RVKHLILADPW 68 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~--~v~~lvli~~~ 68 (335)
+-++++|+|-||.++-.++.+.|+ .|+.+|.++++
T Consensus 95 ~G~naIGfSQGglflRa~ierc~~~p~V~nlISlggp 131 (306)
T PLN02606 95 EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGP 131 (306)
T ss_pred CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCC
Confidence 469999999999999999999987 59999999875
No 175
>PLN02633 palmitoyl protein thioesterase family protein
Probab=95.92 E-value=0.72 Score=39.77 Aligned_cols=35 Identities=20% Similarity=0.069 Sum_probs=31.9
Q ss_pred CcEEEEEechhHHHHHHHHHhCCc--hhceeeEecCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPD--RVKHLILADPW 68 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~--~v~~lvli~~~ 68 (335)
+-++++|+|-||.++-.++.+.|+ .|+.+|.++++
T Consensus 94 ~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggp 130 (314)
T PLN02633 94 QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGP 130 (314)
T ss_pred CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCC
Confidence 469999999999999999999987 59999999874
No 176
>COG0627 Predicted esterase [General function prediction only]
Probab=95.91 E-value=0.012 Score=51.24 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=42.2
Q ss_pred HHHHHHHHHH-HhCC----CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCCC
Q psy17711 20 LVTSIEEWRK-ELKL----QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKS 74 (335)
Q Consensus 20 ~~~dl~~ll~-~lg~----~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~~ 74 (335)
+.+.+-++++ +... +.-.++||||||.=|+.+|++||+++..+..+++...+..+
T Consensus 133 l~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~ 192 (316)
T COG0627 133 LTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSP 192 (316)
T ss_pred HHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccc
Confidence 3446664444 3332 26889999999999999999999999999999987655543
No 177
>KOG2183|consensus
Probab=95.87 E-value=0.011 Score=52.01 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHHHHHhCC------CcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 15 TVERQLVTSIEEWRKELKL------QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 15 ~~~~~~~~dl~~ll~~lg~------~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
.+.++..+|...++.++.- .+++.+|-|.||+++..+=.+||+.|.|....+++
T Consensus 142 LtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAP 201 (492)
T KOG2183|consen 142 LTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAP 201 (492)
T ss_pred ccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCc
Confidence 3556666677777766643 48999999999999999999999998887766544
No 178
>PLN00413 triacylglycerol lipase
Probab=95.82 E-value=0.03 Score=50.80 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHH
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAI 53 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~ 53 (335)
.++.+.+..+++.....++++.|||+||.+|..+|.
T Consensus 268 y~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 268 YTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 356677788888777678999999999999999885
No 179
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.78 E-value=0.034 Score=47.01 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 18 RQLVTSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
..+.+-+..++...+++ +|++.|.|-||.++..+++.+|+.+.++..++...
T Consensus 126 gflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 126 GFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred HHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 45566666666777886 79999999999999999999999999999988754
No 180
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=95.71 E-value=0.32 Score=42.29 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHh-----CC--CcEEEEEechhHHHHHHHHHhCC
Q psy17711 18 RQLVTSIEEWRKEL-----KL--QEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 18 ~~~~~dl~~ll~~l-----g~--~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
++++.|-.+.++.| |+ +.+++.|||+||.++..++..+.
T Consensus 192 ~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 192 KDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred HHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 56666665555444 33 67999999999999998766654
No 181
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.69 E-value=0.25 Score=44.10 Aligned_cols=65 Identities=6% Similarity=-0.015 Sum_probs=45.9
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEe-----------CCCCccccccChHHHHHHHHHHhhhchh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSV-----------TGAGHHVYADRADVFNKMVNDTCTLSDE 242 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i-----------~~~gH~~~~e~p~~~~~~I~~fl~~~~~ 242 (335)
++-.+..|+..|.. |.+.-+.+.+.+.. +=+++++.+ .+..|.+-+..-..+.+.+-..++++..
T Consensus 293 ~~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lIkdes~iDGkfIKnl~HGmgis~k~Lf~KeLp~~lek~~~ 370 (403)
T PF11144_consen 293 KIIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLIKDESEIDGKFIKNLEHGMGISDKALFKKELPLMLEKLQG 370 (403)
T ss_pred ceEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEecChhhccchheeccccCCCCCHHHHHHHHhHHHHHHhhc
Confidence 45567779999999 98888888887765 345777777 2357776666666667777666666543
No 182
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.083 Score=44.95 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.1
Q ss_pred cEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 35 EMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 35 ~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
.-+|.|.|+||.+++..+..||+++-.++..+|..
T Consensus 178 ~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~ 212 (299)
T COG2382 178 GRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSF 212 (299)
T ss_pred CcEEeccccccHHHHHHHhcCchhhceeeccCCcc
Confidence 56899999999999999999999999999988854
No 183
>KOG2369|consensus
Probab=95.52 E-value=0.016 Score=52.11 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHH----HhCCCcEEEEEechhHHHHHHHHHhCCc--------hhceeeEecCC
Q psy17711 18 RQLVTSIEEWRK----ELKLQEMILLGHSFGGYLAFAYAIQYPD--------RVKHLILADPW 68 (335)
Q Consensus 18 ~~~~~dl~~ll~----~lg~~~~~lvGhS~Gg~ia~~~a~~~P~--------~v~~lvli~~~ 68 (335)
+++-..+...++ .-|.+|++|++|||||.+.+.+...+++ .|++.+-++++
T Consensus 162 d~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~~~~~~~W~~k~I~sfvnig~p 224 (473)
T KOG2369|consen 162 DQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWVEAEGPAWCDKYIKSFVNIGAP 224 (473)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhcccccchhHHHHHHHHHHccCch
Confidence 344444444443 4466899999999999999999999876 46777777653
No 184
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=95.43 E-value=0.051 Score=47.26 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=50.2
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhchhhhc
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSDEKLD 245 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~~~~~ 245 (335)
..|-.++.|..|.+ +++.+....+.+|+ . .-+..+|+..|... +..+.+.+..|++++....+
T Consensus 329 alpKyivnaSgDdff~pDsa~lYyd~LPG-~-kaLrmvPN~~H~~~---n~~i~esl~~flnrfq~~~~ 392 (507)
T COG4287 329 ALPKYIVNASGDDFFVPDSANLYYDDLPG-E-KALRMVPNDPHNLI---NQFIKESLEPFLNRFQMYPK 392 (507)
T ss_pred cccceeecccCCcccCCCccceeeccCCC-c-eeeeeCCCCcchhh---HHHHHHHHHHHHHHHhcCCC
Confidence 89999999999988 99999999999998 3 56788899999765 34456677788887765433
No 185
>COG3150 Predicted esterase [General function prediction only]
Probab=95.27 E-value=0.051 Score=41.91 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCC
Q psy17711 16 VERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQ 72 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~ 72 (335)
...+.++.+..++..++.+...|+|-|+||..|..++.++. +++ |++||...|.
T Consensus 41 ~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~G--ira-v~~NPav~P~ 94 (191)
T COG3150 41 DPQQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCG--IRA-VVFNPAVRPY 94 (191)
T ss_pred CHHHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhC--Chh-hhcCCCcCch
Confidence 34788899999999999888999999999999999999985 444 5567765543
No 186
>PLN02408 phospholipase A1
Probab=95.23 E-value=0.036 Score=48.94 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHHhC
Q psy17711 18 RQLVTSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+++.+.+..+++..+.. ++++.|||+||.+|..+|...
T Consensus 182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHH
Confidence 34556677777766543 599999999999999988764
No 187
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=95.19 E-value=0.079 Score=42.26 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHh--C----CchhceeeEecCCCC
Q psy17711 19 QLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ--Y----PDRVKHLILADPWGF 70 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~--~----P~~v~~lvli~~~~~ 70 (335)
++.+.+.+....-.-.+++|+|+|.|+.++..++.. . .++|.++++++-+..
T Consensus 66 ~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~ 123 (179)
T PF01083_consen 66 NLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRR 123 (179)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcc
Confidence 333444444444455689999999999999999887 3 368999999976443
No 188
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=95.04 E-value=0.98 Score=38.38 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=46.4
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcCC--CceEEEEeCCCCcccccc---ChHHHHHHHHHHhhhchhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQN--SFVQVKSVTGAGHHVYAD---RADVFNKMVNDTCTLSDEK 243 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~~--~~~~~~~i~~~gH~~~~e---~p~~~~~~I~~fl~~~~~~ 243 (335)
+|-.+-+-|++|.+ .....+...+.+.+. ...+...-+++||+..+. -.+++.-.|.+|+.+....
T Consensus 339 ~~aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~d~~ 410 (415)
T COG4553 339 NVALFTVEGENDDISGVGQTKAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRYDRS 410 (415)
T ss_pred ceeEEEeecccccccccchhHHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHhCcc
Confidence 57778889999988 555555555555441 334556668999998875 3567788899999887654
No 189
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=95.00 E-value=0.064 Score=43.41 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHhCC-CcEEEEEechhHHHHHHHHHhC
Q psy17711 16 VERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~-~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
...|..+....+|++.+. ++++|+|||-|+.+..++...+
T Consensus 76 ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 76 AYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 346778888888888865 6899999999999999998875
No 190
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=94.88 E-value=0.75 Score=38.28 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=27.4
Q ss_pred cEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 35 EMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 35 ~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
|++-||||+|+-+-+.+...++..-++-++++-
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~~~r~gniliSF 123 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFDVERAGNILISF 123 (250)
T ss_pred CeeeeecccchHHHHHHhhhccCcccceEEEec
Confidence 678999999999999988887755577787774
No 191
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=94.84 E-value=0.086 Score=46.35 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=31.2
Q ss_pred hCCCcEEEEEechhHHHHHHHHHhCCc-----hhceeeEecCCC
Q psy17711 31 LKLQEMILLGHSFGGYLAFAYAIQYPD-----RVKHLILADPWG 69 (335)
Q Consensus 31 lg~~~~~lvGhS~Gg~ia~~~a~~~P~-----~v~~lvli~~~~ 69 (335)
.|.+|+.|||||+|+.+........++ .|+.+++++.+.
T Consensus 217 ~G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv 260 (345)
T PF05277_consen 217 QGERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPV 260 (345)
T ss_pred CCCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCC
Confidence 377899999999999998877765544 388999998654
No 192
>PLN02324 triacylglycerol lipase
Probab=94.82 E-value=0.075 Score=47.62 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+++.+.|..+++....+ ++++.|||+||.+|+..|..
T Consensus 197 eqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 197 EQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 45566777777776543 69999999999999999875
No 193
>PLN02934 triacylglycerol lipase
Probab=94.79 E-value=0.065 Score=49.07 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
.++.+.+..+++.....++++.|||+||.+|..+|..
T Consensus 305 ~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~~ 341 (515)
T PLN02934 305 YAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPTV 341 (515)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHHH
Confidence 4567778888887776789999999999999998753
No 194
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=94.63 E-value=0.067 Score=49.93 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHh----CCCcEEEEEechhHHHHHHHHHhC-----------C----chhceeeEecCCC
Q psy17711 18 RQLVTSIEEWRKEL----KLQEMILLGHSFGGYLAFAYAIQY-----------P----DRVKHLILADPWG 69 (335)
Q Consensus 18 ~~~~~dl~~ll~~l----g~~~~~lvGhS~Gg~ia~~~a~~~-----------P----~~v~~lvli~~~~ 69 (335)
+++-..+..+++.. +-++++|+||||||.+++.+...- + ..|++.|.++++.
T Consensus 193 d~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~ 263 (642)
T PLN02517 193 DQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPF 263 (642)
T ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheeccccc
Confidence 34444555555533 357999999999999999987642 1 2488999998753
No 195
>PLN02310 triacylglycerol lipase
Probab=94.48 E-value=0.11 Score=46.50 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhC---C-CcEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELK---L-QEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg---~-~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+++.+.+..+++.+. . -++++.|||+||.+|+..|..
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 456667777777653 2 369999999999999988864
No 196
>PLN02802 triacylglycerol lipase
Probab=94.33 E-value=0.078 Score=48.59 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHHhC
Q psy17711 18 RQLVTSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+++.+.+..+++...-+ ++++.|||+||.+|...|...
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHH
Confidence 34556677777766432 689999999999999888754
No 197
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=94.30 E-value=0.12 Score=44.38 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=47.2
Q ss_pred CCEEEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChH---HHHHHHHHHhhh
Q psy17711 179 VPVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRAD---VFNKMVNDTCTL 239 (335)
Q Consensus 179 ~PvLii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~---~~~~~I~~fl~~ 239 (335)
+|+|+++|.+|.. +......+.+.... ...+...+++++|......+. +..+.+.+|+.+
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~ 296 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARE-RPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLER 296 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhcc-CCceEEEecCCccccccCccHHHHHHHHHHHHHHHH
Confidence 8999999999988 88888888877766 246788889999998875444 566777777764
No 198
>PLN02753 triacylglycerol lipase
Probab=94.20 E-value=0.086 Score=48.52 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCC-----CcEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELKL-----QEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~-----~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+++.+.|..+++..+. -++++.|||+||.+|...|..
T Consensus 291 eQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 291 EQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 4556667777776643 479999999999999999864
No 199
>PLN02719 triacylglycerol lipase
Probab=93.90 E-value=0.11 Score=47.79 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCC-----CcEEEEEechhHHHHHHHHHhC
Q psy17711 18 RQLVTSIEEWRKELKL-----QEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~-----~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+++.+.|..+++.... .++++.|||+||.+|...|...
T Consensus 277 eQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~Dl 319 (518)
T PLN02719 277 EQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYDV 319 (518)
T ss_pred HHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHHH
Confidence 4555666677766542 3799999999999999988653
No 200
>KOG3724|consensus
Probab=93.86 E-value=0.1 Score=49.97 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=24.6
Q ss_pred cEEEEEechhHHHHHHHHHh---CCchhceeeEecCC
Q psy17711 35 EMILLGHSFGGYLAFAYAIQ---YPDRVKHLILADPW 68 (335)
Q Consensus 35 ~~~lvGhS~Gg~ia~~~a~~---~P~~v~~lvli~~~ 68 (335)
.+++|||||||.+|...+.. .++.|.-++..+++
T Consensus 183 sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssP 219 (973)
T KOG3724|consen 183 SVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSP 219 (973)
T ss_pred eEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCc
Confidence 49999999999999876653 24456666666643
No 201
>PLN03037 lipase class 3 family protein; Provisional
Probab=93.84 E-value=0.11 Score=47.85 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCC----CcEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELKL----QEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~----~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+++.++|..+++.+.. .++++.|||+||.+|+..|..
T Consensus 298 eQVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 298 EQVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 3566677777776642 369999999999999988864
No 202
>PLN02761 lipase class 3 family protein
Probab=93.69 E-value=0.12 Score=47.52 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhC-----C-CcEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELK-----L-QEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg-----~-~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+++.+.|..+++..+ . -++++.|||+||.+|+..|..
T Consensus 272 ~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 272 EQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 456667777777662 1 269999999999999988864
No 203
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=0.11 Score=39.70 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.1
Q ss_pred CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCCCCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQK 73 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~~~~ 73 (335)
+.+.+|++|||-++|-++..-.+ +++.+.+++.+.+-.
T Consensus 57 ~hirlvAwSMGVwvAeR~lqg~~--lksatAiNGTgLpcD 94 (214)
T COG2830 57 RHIRLVAWSMGVWVAERVLQGIR--LKSATAINGTGLPCD 94 (214)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcc--ccceeeecCCCCCcc
Confidence 57889999999999999988775 777788877654433
No 204
>PLN02847 triacylglycerol lipase
Probab=92.91 E-value=0.2 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.5
Q ss_pred CCCcEEEEEechhHHHHHHHHHh
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
..-+++++|||+||.+|..++..
T Consensus 249 PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 249 PDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCCeEEEeccChHHHHHHHHHHH
Confidence 33479999999999999988775
No 205
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=92.77 E-value=0.24 Score=45.28 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=44.2
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhc--------------C---------CCceEEEEeCCCCccccccChHHHHHHH
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARS--------------Q---------NSFVQVKSVTGAGHHVYADRADVFNKMV 233 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~--------------~---------~~~~~~~~i~~~gH~~~~e~p~~~~~~I 233 (335)
.++||+.+|..|.+ +....+.+.+.+. + ..+.+++.+.+|||++..++|+...+.+
T Consensus 330 ~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~ 409 (415)
T PF00450_consen 330 GIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMF 409 (415)
T ss_dssp T-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHH
T ss_pred cceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHH
Confidence 59999999999988 6555555554421 1 1247789999999999999999999999
Q ss_pred HHHhh
Q psy17711 234 NDTCT 238 (335)
Q Consensus 234 ~~fl~ 238 (335)
..|++
T Consensus 410 ~~fl~ 414 (415)
T PF00450_consen 410 RRFLK 414 (415)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99986
No 206
>KOG2182|consensus
Probab=92.67 E-value=0.28 Score=44.66 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCC---hhccHHHHHHHHHHHHHHhCC-------CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCCC
Q psy17711 1 FGRSSRPRFSTD---PETVERQLVTSIEEWRKELKL-------QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGF 70 (335)
Q Consensus 1 hG~S~~~~~~~~---~~~~~~~~~~dl~~ll~~lg~-------~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~~ 70 (335)
||.|.+.....+ ...+..+...|+.+++++++. .|++..|-|+-|.++..+=..+|+.+.|.|..+++..
T Consensus 129 YG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~ 208 (514)
T KOG2182|consen 129 YGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVL 208 (514)
T ss_pred cccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccccee
Confidence 577754332211 123677888899999988753 2899999999999999999999999999888776543
No 207
>KOG4569|consensus
Probab=92.58 E-value=0.22 Score=44.11 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHh
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
..+.+++..+++...--++++-|||+||.+|..+|..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 5777888888888887789999999999999988875
No 208
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=92.21 E-value=0.13 Score=45.58 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.8
Q ss_pred CcEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
++|.++|+||||..++.+|+..+ +|++.|..+.
T Consensus 226 ~RIG~~GfSmGg~~a~~LaALDd-RIka~v~~~~ 258 (390)
T PF12715_consen 226 DRIGCMGFSMGGYRAWWLAALDD-RIKATVANGY 258 (390)
T ss_dssp EEEEEEEEGGGHHHHHHHHHH-T-T--EEEEES-
T ss_pred cceEEEeecccHHHHHHHHHcch-hhHhHhhhhh
Confidence 47999999999999999999876 7988887764
No 209
>KOG2237|consensus
Probab=92.16 E-value=1.3 Score=41.79 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 16 VERQLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~lg~---~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
+++|+......|++. |. ++..+.|.|-||.++-..+..+|+.+.++|+--|.
T Consensus 529 ~f~Dfia~AeyLve~-gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~Vpf 583 (712)
T KOG2237|consen 529 SFDDFIACAEYLVEN-GYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPF 583 (712)
T ss_pred cHHHHHHHHHHHHHc-CCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcc
Confidence 567888777777764 33 57999999999999999999999999999886663
No 210
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=90.52 E-value=0.54 Score=44.11 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHHHHhCC--CcEEEEEechhHHHHHHHHHh--CCchhceeeEecCCCC
Q psy17711 23 SIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQ--YPDRVKHLILADPWGF 70 (335)
Q Consensus 23 dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~--~P~~v~~lvli~~~~~ 70 (335)
.+.+-++..|. ++++|+|+|.||..+..++.. .+..++++|+.++...
T Consensus 163 wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 163 WVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 33344555565 479999999999999888776 3457999999887543
No 211
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=90.43 E-value=0.93 Score=39.86 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=46.6
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhc------------C---------CCc-eEEEEeCCCCccccccChHHHHHHHH
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARS------------Q---------NSF-VQVKSVTGAGHHVYADRADVFNKMVN 234 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~------------~---------~~~-~~~~~i~~~gH~~~~e~p~~~~~~I~ 234 (335)
.++||+..|+.|.+ +....+.+.+.+. + ..+ .++.++.+|||+++ .+|+...+.+.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 58999999999977 5555555554432 1 122 77888889999996 59999999999
Q ss_pred HHhhh
Q psy17711 235 DTCTL 239 (335)
Q Consensus 235 ~fl~~ 239 (335)
.|+..
T Consensus 312 ~fi~~ 316 (319)
T PLN02213 312 RWISG 316 (319)
T ss_pred HHHcC
Confidence 99864
No 212
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=90.05 E-value=0.5 Score=37.65 Aligned_cols=62 Identities=8% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC--CCceEEEEeCCCCccccccCh---HHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ--NSFVQVKSVTGAGHHVYADRA---DVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~--~~~~~~~~i~~~gH~~~~e~p---~~~~~~I~~fl~~ 239 (335)
+++.|-|-|+.|.+ .+.......+++.+ ......++.+|+||+-.+.-+ +++.-.|.+|+..
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 67888899999999 77777777777665 134567788999999988643 5567777777753
No 213
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=89.39 E-value=6.7 Score=37.04 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHHHHhCC--CcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 23 SIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 23 dl~~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
|+.+.+....+ .+|-.+|-|++|...+.+|+..|.-+++++...+..
T Consensus 111 D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~ 159 (563)
T COG2936 111 DTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLV 159 (563)
T ss_pred HHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeeccccccc
Confidence 44555555544 489999999999999999999888888888877643
No 214
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=88.47 E-value=1.5 Score=37.46 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhC-C-CcEEEEEechhHHHHHHHHHhCCc-hhceeeEecCC
Q psy17711 18 RQLVTSIEEWRKELK-L-QEMILLGHSFGGYLAFAYAIQYPD-RVKHLILADPW 68 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg-~-~~~~lvGhS~Gg~ia~~~a~~~P~-~v~~lvli~~~ 68 (335)
++.++.+.+.+..-. . +-++++|+|-||.++-.++.++|+ .|+.+|.++++
T Consensus 62 ~~Qv~~vc~~l~~~p~L~~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggp 115 (279)
T PF02089_consen 62 NDQVEQVCEQLANDPELANGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGP 115 (279)
T ss_dssp HHHHHHHHHHHHH-GGGTT-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--
T ss_pred HHHHHHHHHHHhhChhhhcceeeeeeccccHHHHHHHHHCCCCCceeEEEecCc
Confidence 444444444444321 1 469999999999999999999875 69999999874
No 215
>KOG3967|consensus
Probab=87.98 E-value=1.2 Score=35.96 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=34.7
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHHhCCc--hhceeeEecCC
Q psy17711 26 EWRKELKLQEMILLGHSFGGYLAFAYAIQYPD--RVKHLILADPW 68 (335)
Q Consensus 26 ~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~--~v~~lvli~~~ 68 (335)
.++.-...+.+.+|.||.||...+.+..++|+ +|-++.+.+.+
T Consensus 182 ~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 182 NIVLPAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHhcccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 34444556789999999999999999999984 77788877765
No 216
>KOG1202|consensus
Probab=87.76 E-value=9.3 Score=39.37 Aligned_cols=55 Identities=25% Similarity=0.214 Sum_probs=40.6
Q ss_pred hccHHHHHHHHHHHHHHhCC-CcEEEEEechhHHHHHHHHHhCC--chhceeeEecCC
Q psy17711 14 ETVERQLVTSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYP--DRVKHLILADPW 68 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~lg~-~~~~lvGhS~Gg~ia~~~a~~~P--~~v~~lvli~~~ 68 (335)
..++++.+.....-++.+.. .|..++|+|+|+.++..+|.... +....+|++++.
T Consensus 2161 ~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGs 2218 (2376)
T KOG1202|consen 2161 LDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQQSPAPLILLDGS 2218 (2376)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhhcCCCcEEEecCc
Confidence 34566777765555555543 58999999999999999998653 346679999875
No 217
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=87.17 E-value=1.4 Score=37.32 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 19 QLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
+..+-+..+.+.....++++-|||+||.+|..+-.++. +-.+..-+|
T Consensus 261 a~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg--lP~VaFesP 307 (425)
T COG5153 261 AALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFG--LPVVAFESP 307 (425)
T ss_pred HHHHHHHHHHHhCCCceEEEeccccchHHHHHhccccC--CceEEecCc
Confidence 33444445555555568999999999999999888774 334444444
No 218
>KOG4540|consensus
Probab=87.17 E-value=1.4 Score=37.32 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 19 QLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
+..+-+..+.+.....++++-|||+||.+|..+-.++. +-.+..-+|
T Consensus 261 a~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg--lP~VaFesP 307 (425)
T KOG4540|consen 261 AALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFG--LPVVAFESP 307 (425)
T ss_pred HHHHHHHHHHHhCCCceEEEeccccchHHHHHhccccC--CceEEecCc
Confidence 33444445555555568999999999999999888774 334444444
No 219
>PLN02209 serine carboxypeptidase
Probab=86.87 E-value=2.4 Score=39.07 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=47.3
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhc-------------C--------CCc-eEEEEeCCCCccccccChHHHHHHHH
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARS-------------Q--------NSF-VQVKSVTGAGHHVYADRADVFNKMVN 234 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~-------------~--------~~~-~~~~~i~~~gH~~~~e~p~~~~~~I~ 234 (335)
.++||+..|+.|.+ +....+.+.+.++ + .++ .+++.+.+|||++. .+|++....+.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 58999999999988 6655555555432 1 123 77888999999996 69999999999
Q ss_pred HHhhh
Q psy17711 235 DTCTL 239 (335)
Q Consensus 235 ~fl~~ 239 (335)
.|+..
T Consensus 430 ~fi~~ 434 (437)
T PLN02209 430 RWISG 434 (437)
T ss_pred HHHcC
Confidence 99864
No 220
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=86.39 E-value=2.7 Score=38.69 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=46.8
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhc------------C---------CC-ceEEEEeCCCCccccccChHHHHHHHH
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARS------------Q---------NS-FVQVKSVTGAGHHVYADRADVFNKMVN 234 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~------------~---------~~-~~~~~~i~~~gH~~~~e~p~~~~~~I~ 234 (335)
.++||+..|+.|.+ +....+.+.+.+. + .. +.+++++.+|||++. .+|+.....+.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 58999999999988 6555555554432 1 12 277888999999996 58999999999
Q ss_pred HHhhh
Q psy17711 235 DTCTL 239 (335)
Q Consensus 235 ~fl~~ 239 (335)
.|+..
T Consensus 426 ~Fi~~ 430 (433)
T PLN03016 426 RWISG 430 (433)
T ss_pred HHHcC
Confidence 99864
No 221
>KOG1282|consensus
Probab=84.90 E-value=2.3 Score=39.05 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=47.1
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhc--------------C--------CCceEEEEeCCCCccccccChHHHHHHHH
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARS--------------Q--------NSFVQVKSVTGAGHHVYADRADVFNKMVN 234 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~--------------~--------~~~~~~~~i~~~gH~~~~e~p~~~~~~I~ 234 (335)
..+++|..|+.|.+ +.-..+.+.+.+. + -.+..+..+.|+||++..++|+.....+.
T Consensus 363 ~~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~ 442 (454)
T KOG1282|consen 363 GYRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQ 442 (454)
T ss_pred ceEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHH
Confidence 37999999999987 6555554433211 0 11255688899999999999999999999
Q ss_pred HHhhhc
Q psy17711 235 DTCTLS 240 (335)
Q Consensus 235 ~fl~~~ 240 (335)
.|+...
T Consensus 443 ~fl~g~ 448 (454)
T KOG1282|consen 443 RFLNGQ 448 (454)
T ss_pred HHHcCC
Confidence 999763
No 222
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=84.48 E-value=1.7 Score=38.79 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHHh----CCCcEEEEEechhHHHHHHHHHhCCc
Q psy17711 16 VERQLVTSIEEWRKEL----KLQEMILLGHSFGGYLAFAYAIQYPD 57 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~l----g~~~~~lvGhS~Gg~ia~~~a~~~P~ 57 (335)
+.+++++|+..+++.. |.+++.|+|+|+|+=+.-....+.|.
T Consensus 304 tPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADvlP~~~n~L~~ 349 (456)
T COG3946 304 TPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGADVLPFAYNRLPP 349 (456)
T ss_pred CHHHHHHHHHHHHHHHHHhhCcceEEEEeecccchhhHHHHHhCCH
Confidence 4578888988888655 56799999999999988777777764
No 223
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.22 E-value=1.4 Score=34.36 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 25 EEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 25 ~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
..+++..-....++-|-||||..|..+.-+||+.+.++|.+++.
T Consensus 92 rYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGv 135 (227)
T COG4947 92 RYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGV 135 (227)
T ss_pred HHHHHhhcCCCccccccchhhhhhhhhheeChhHhhhheeecce
Confidence 33444333345778899999999999999999999999999875
No 224
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=84.10 E-value=3.2 Score=34.42 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=30.8
Q ss_pred ChhccHHHHHHHHHHHHHHh--CCCcEEEEEechhHHHHHHHHHhC
Q psy17711 12 DPETVERQLVTSIEEWRKEL--KLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 12 ~~~~~~~~~~~dl~~ll~~l--g~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+...++.+=++.+.+.++.. .-++++++|+|.|+.++...+.+.
T Consensus 24 t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 24 TYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred ccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHH
Confidence 34445556666666666542 237899999999999998877754
No 225
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.08 E-value=16 Score=33.79 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCC--cEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 18 RQLVTSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
+.+.+-|.+-++.||.+ .++|-|-|||..-|+.|++..- -.++|+--|
T Consensus 339 ~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKP 388 (511)
T TIGR03712 339 QGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKP 388 (511)
T ss_pred HHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCc
Confidence 45666777778889885 6999999999999999999762 346665444
No 226
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=83.50 E-value=2.4 Score=39.57 Aligned_cols=69 Identities=12% Similarity=-0.038 Sum_probs=47.8
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC---------CCceEEEEeCCCCcccccc--ChHHHHHHHHHHhhhchhhhc
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ---------NSFVQVKSVTGAGHHVYAD--RADVFNKMVNDTCTLSDEKLD 245 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~---------~~~~~~~~i~~~gH~~~~e--~p~~~~~~I~~fl~~~~~~~~ 245 (335)
.-.+++.||..|.+ ++.....+.+.+.. ..-.++..+||.+|+.--. .+-.....|.+|+++=.....
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~AP~~ 432 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGKAPET 432 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCCCCCe
Confidence 57899999999998 77666655554322 1347899999999998654 344566677788876544444
Q ss_pred c
Q psy17711 246 I 246 (335)
Q Consensus 246 ~ 246 (335)
+
T Consensus 433 l 433 (474)
T PF07519_consen 433 L 433 (474)
T ss_pred e
Confidence 4
No 227
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=82.86 E-value=3.3 Score=39.15 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHH---HHHhCC--CcEEEEEechhHHHHHHHHHhC--CchhceeeEecCCCC
Q psy17711 15 TVERQLVTSIEEW---RKELKL--QEMILLGHSFGGYLAFAYAIQY--PDRVKHLILADPWGF 70 (335)
Q Consensus 15 ~~~~~~~~dl~~l---l~~lg~--~~~~lvGhS~Gg~ia~~~a~~~--P~~v~~lvli~~~~~ 70 (335)
+.+.|....+.-+ |..+|- ++|.|+|||.||..+..+...- ...+.++|+.++...
T Consensus 184 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~ 246 (535)
T PF00135_consen 184 YGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSAL 246 (535)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TT
T ss_pred hhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccccc
Confidence 3444555554444 445555 4799999999999988777762 247999999998543
No 228
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=82.65 E-value=4.2 Score=32.05 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=11.7
Q ss_pred HHHHHHhhhhhHhhhh
Q psy17711 314 MFLVLFGLGYYFSYLK 329 (335)
Q Consensus 314 ~~~~~~~~~~~~~~~~ 329 (335)
..+.||.+|||-+++.
T Consensus 126 ~~~~L~ilG~~~a~~s 141 (169)
T TIGR00267 126 TLIALLVLGVYLGRIS 141 (169)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3477888999887753
No 229
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=79.77 E-value=5.6 Score=37.54 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 17 ERQLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 17 ~~~~~~dl~~ll~~lg~---~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
++|++.....++++ |+ +++-+.|-|=||.+.-....++|+.+.++|+--|
T Consensus 481 fdDf~AVaedLi~r-gitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evP 533 (648)
T COG1505 481 FDDFIAVAEDLIKR-GITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVP 533 (648)
T ss_pred hHHHHHHHHHHHHh-CCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccc
Confidence 35555555555543 44 4688999999999999999999999888877555
No 230
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=79.54 E-value=7 Score=21.61 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=22.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17711 291 RSVTFMTLGIVMVSMMILMTLLTMFLVLF 319 (335)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (335)
.-.+|+-+=++++-+|++.++...|+...
T Consensus 5 kKS~fekiT~v~v~lM~i~tvg~v~~~al 33 (35)
T PF13253_consen 5 KKSTFEKITMVVVWLMLILTVGSVVASAL 33 (35)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999988888776543
No 231
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=78.62 E-value=4.1 Score=28.77 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=14.7
Q ss_pred ccchhhhHH-HHHHHHHHHHHHH
Q psy17711 291 RSVTFMTLG-IVMVSMMILMTLL 312 (335)
Q Consensus 291 ~~~~~~~~~-~~~~~~~~~~~~~ 312 (335)
......++| |+.+|+.++.|.+
T Consensus 35 ~~~~~~~l~~~g~IG~~~v~pil 57 (100)
T TIGR02230 35 TRSIWEGLGMFGLIGWSVAIPTL 57 (100)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 344677777 7777777766643
No 232
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=77.71 E-value=6.2 Score=21.08 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhhhHhhhhh
Q psy17711 310 TLLTMFLVLFGLGYYFSYLKT 330 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~ 330 (335)
..+|..|+|+||+.=|--||-
T Consensus 7 a~i~~~lvlvGla~Gf~LLki 27 (31)
T PF08041_consen 7 AVICFGLVLVGLALGFVLLKI 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 456677888888887777763
No 233
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=77.09 E-value=4.2 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhh
Q psy17711 307 ILMTLLTMFLVLFGLGYYFSYLK 329 (335)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
+-...+|..|||+|++.=|--||
T Consensus 6 f~~A~i~~~LvlvGlalGf~LLk 28 (32)
T PRK11876 6 FGIAALFWVLIPVGLAGGALLLK 28 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHhee
Confidence 33455677788888876665555
No 234
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=76.47 E-value=1 Score=40.27 Aligned_cols=67 Identities=24% Similarity=0.169 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCChhccHHHHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 1 hG~S~~~~~~~~~~~~~~~~~~dl~~ll~~lg~---~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
||.|.+.+.+-+ ..++++.+.|.+.+.+.+.- .+.+--|-|=||+.++.+=.-||+-|++.|.--.+
T Consensus 99 F~~SrP~p~DW~-~Lti~QAA~D~Hri~~A~K~iY~~kWISTG~SKGGmTa~y~rrFyP~DVD~tVaYVAP 168 (448)
T PF05576_consen 99 FGPSRPEPADWS-YLTIWQAASDQHRIVQAFKPIYPGKWISTGGSKGGMTAVYYRRFYPDDVDGTVAYVAP 168 (448)
T ss_pred ccCCCCCCCCcc-cccHhHhhHHHHHHHHHHHhhccCCceecCcCCCceeEEEEeeeCCCCCCeeeeeecc
Confidence 466765553333 35889999999999888742 68889999999999999999999999998875443
No 235
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=75.04 E-value=2.3 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 24 l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+..+++..|++|-.++|||+|=..|+.+|...
T Consensus 74 l~~~l~~~Gi~P~~v~GhSlGE~aA~~aaG~l 105 (318)
T PF00698_consen 74 LARLLRSWGIKPDAVIGHSLGEYAALVAAGAL 105 (318)
T ss_dssp HHHHHHHTTHCESEEEESTTHHHHHHHHTTSS
T ss_pred hhhhhcccccccceeeccchhhHHHHHHCCcc
Confidence 44566788999999999999998888666543
No 236
>KOG2385|consensus
Probab=74.57 E-value=8.1 Score=35.73 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=31.1
Q ss_pred HhCCCcEEEEEechhHHHHHHHHHh-----CCchhceeeEecCCCC
Q psy17711 30 ELKLQEMILLGHSFGGYLAFAYAIQ-----YPDRVKHLILADPWGF 70 (335)
Q Consensus 30 ~lg~~~~~lvGhS~Gg~ia~~~a~~-----~P~~v~~lvli~~~~~ 70 (335)
.+|.+|+.|||+|+|+-+....... .-+.|..+++++++..
T Consensus 443 ~qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~ 488 (633)
T KOG2385|consen 443 SQGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVP 488 (633)
T ss_pred ccCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCcc
Confidence 4578999999999999998755442 2246889999987543
No 237
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=74.21 E-value=6.3 Score=35.92 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHHh-------CCCcEEEEEechhHHHHHHHHHh----C------CchhceeeEecCCCC
Q psy17711 16 VERQLVTSIEEWRKEL-------KLQEMILLGHSFGGYLAFAYAIQ----Y------PDRVKHLILADPWGF 70 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~l-------g~~~~~lvGhS~Gg~ia~~~a~~----~------P~~v~~lvli~~~~~ 70 (335)
+.++.++|+..+|..+ .-.+++|.|.|+||..+-.+|.. . +-.++|+++.++...
T Consensus 111 ~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~d 182 (415)
T PF00450_consen 111 NDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWID 182 (415)
T ss_dssp SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SB
T ss_pred hhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCcccc
Confidence 4567777777777654 33589999999999988777764 2 234789999888643
No 238
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=73.91 E-value=3 Score=38.33 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCC--cEEEEEechhHHHHHHHHHh--CCchhceeeEecCCCC
Q psy17711 22 TSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQ--YPDRVKHLILADPWGF 70 (335)
Q Consensus 22 ~dl~~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~--~P~~v~~lvli~~~~~ 70 (335)
+.+.+-|+++|-+ .|.|+|+|-||+.++.+.+. ....+.++|+.++...
T Consensus 166 kWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 166 KWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 3555557788764 69999999999988877764 2247888888888654
No 239
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=72.53 E-value=4.9 Score=34.81 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHh
Q psy17711 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 24 l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+.+++..+|+++-.++|||+|-..|+.++..
T Consensus 72 ~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag~ 102 (298)
T smart00827 72 LARLWRSWGVRPDAVVGHSLGEIAAAYVAGV 102 (298)
T ss_pred HHHHHHHcCCcccEEEecCHHHHHHHHHhCC
Confidence 3345678899999999999999888776543
No 240
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=72.23 E-value=13 Score=20.05 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=8.7
Q ss_pred HHHHHHHHhhhhhHhhh
Q psy17711 312 LTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ 328 (335)
|+.|...|=+|-|+-||
T Consensus 15 Lt~~ILvFWfgvf~~fl 31 (34)
T PF08113_consen 15 LTAFILVFWFGVFALFL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 34444455555555554
No 241
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=71.99 E-value=11 Score=25.31 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHhhhhhH
Q psy17711 296 MTLGIVMVSMMILMTLL-TMFLVLFGLGYYF 325 (335)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 325 (335)
+++.+..+||.+|...| ...+++..+++.+
T Consensus 3 ~gl~i~i~Gm~iVF~~L~lL~~~i~l~~~~~ 33 (79)
T PF04277_consen 3 EGLQIMIIGMGIVFLVLILLILVISLMSKLI 33 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777665433 3334444445443
No 242
>KOG2541|consensus
Probab=70.58 E-value=14 Score=31.30 Aligned_cols=35 Identities=29% Similarity=0.220 Sum_probs=30.1
Q ss_pred CcEEEEEechhHHHHHHHHHhCCc-hhceeeEecCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPD-RVKHLILADPW 68 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~-~v~~lvli~~~ 68 (335)
+-++++|.|-||.++-.++...|+ .|..+|.++++
T Consensus 92 qGynivg~SQGglv~Raliq~cd~ppV~n~ISL~gP 127 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCDNPPVKNFISLGGP 127 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCCCCCcceeEeccCC
Confidence 459999999999999999988764 68999998864
No 243
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=70.56 E-value=5.9 Score=34.31 Aligned_cols=32 Identities=22% Similarity=0.013 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 24 l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+.+++...|+++-.++|||+|-..|...+...
T Consensus 66 l~~~l~~~g~~P~~v~GhS~GE~aAa~~aG~~ 97 (295)
T TIGR03131 66 AWRALLALLPRPSAVAGYSVGEYAAAVVAGVL 97 (295)
T ss_pred HHHHHHhcCCCCcEEeecCHHHHHHHHHhCCC
Confidence 34556677899999999999998888776543
No 244
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=70.46 E-value=14 Score=28.76 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.8
Q ss_pred ccchhhhHHHHHHHHHHHHH
Q psy17711 291 RSVTFMTLGIVMVSMMILMT 310 (335)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~ 310 (335)
...++=-|||++-||++|.-
T Consensus 115 ~a~~~lQIaI~Lasit~Lt~ 134 (157)
T PF14235_consen 115 LAVALLQIAIVLASITALTK 134 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56688889999999998865
No 245
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=69.40 E-value=12 Score=21.65 Aligned_cols=9 Identities=11% Similarity=0.652 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy17711 300 IVMVSMMIL 308 (335)
Q Consensus 300 ~~~~~~~~~ 308 (335)
+|+.||.+.
T Consensus 11 vGL~Sl~vI 19 (42)
T PF11346_consen 11 VGLMSLIVI 19 (42)
T ss_pred HHHHHHHHH
Confidence 444444433
No 246
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=69.13 E-value=16 Score=32.21 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=28.9
Q ss_pred CCcEEEEEechhHHHHHHHHHhC----------CchhceeeEecCCCCC
Q psy17711 33 LQEMILLGHSFGGYLAFAYAIQY----------PDRVKHLILADPWGFP 71 (335)
Q Consensus 33 ~~~~~lvGhS~Gg~ia~~~a~~~----------P~~v~~lvli~~~~~~ 71 (335)
-.+++|.|-|.||..+-.+|... +=.++|+++-++...+
T Consensus 50 ~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 50 SNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYM 98 (319)
T ss_pred cCCeEEEeeccccchHHHHHHHHHhhcccccCCceeeeEEEeCCCCCCc
Confidence 36899999999999888777642 1156788888876543
No 247
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=68.51 E-value=9.5 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=24.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLF 319 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (335)
.+..|.+.||..++=-+.+..|+..|+.+|
T Consensus 28 ~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 28 PLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466789999988888788888888888776
No 248
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=68.40 E-value=6.4 Score=33.87 Aligned_cols=30 Identities=33% Similarity=0.274 Sum_probs=23.8
Q ss_pred HHHHHhC-CCcEEEEEechhHHHHHHHHHhC
Q psy17711 26 EWRKELK-LQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 26 ~ll~~lg-~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
.++.+.| +++-.++|||+|=..|...+...
T Consensus 74 ~~l~~~g~i~p~~v~GhS~GE~aAa~~aG~l 104 (290)
T TIGR00128 74 LKLKEQGGLKPDFAAGHSLGEYSALVAAGAL 104 (290)
T ss_pred HHHHHcCCCCCCEEeecCHHHHHHHHHhCCC
Confidence 4455667 99999999999999888776544
No 249
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=67.73 E-value=4.5 Score=27.67 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=9.4
Q ss_pred HHHHHHhhhhhHh
Q psy17711 314 MFLVLFGLGYYFS 326 (335)
Q Consensus 314 ~~~~~~~~~~~~~ 326 (335)
.+-..+|+|||+.
T Consensus 64 lv~t~~G~g~y~~ 76 (85)
T TIGR01495 64 LVGAGVGLGYYYK 76 (85)
T ss_pred HHHHHHHHhhhhh
Confidence 3447889999864
No 250
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=67.59 E-value=8.5 Score=33.62 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 23 SIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 23 dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
-+...++..|+..-.++|-|+|+.++..||...+
T Consensus 32 GvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~~ 65 (306)
T cd07225 32 GVIKALEEAGIPVDMVGGTSIGAFIGALYAEERN 65 (306)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 3445556668888889999999999999998753
No 251
>KOG2029|consensus
Probab=67.45 E-value=11 Score=35.59 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=23.9
Q ss_pred CcEEEEEechhHHHHHHHHHh-----CCc------hhceeeEecCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQ-----YPD------RVKHLILADPW 68 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~-----~P~------~v~~lvli~~~ 68 (335)
++++.+||||||.++=.+... .|+ ..+|++.++.+
T Consensus 526 RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 526 RPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred CceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 589999999999887655442 232 35666766654
No 252
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=66.88 E-value=15 Score=20.69 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=9.3
Q ss_pred hHH-HHHHHHHHHHHHHHHHH
Q psy17711 297 TLG-IVMVSMMILMTLLTMFL 316 (335)
Q Consensus 297 ~~~-~~~~~~~~~~~~~~~~~ 316 (335)
+|| |+.|-.-+++..+|||.
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 444 44443334444556654
No 253
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=66.78 E-value=21 Score=25.27 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEechh--HHHHHHHHHhCCchhceeeE
Q psy17711 21 VTSIEEWRKELKLQEMILLGHSFG--GYLAFAYAIQYPDRVKHLIL 64 (335)
Q Consensus 21 ~~dl~~ll~~lg~~~~~lvGhS~G--g~ia~~~a~~~P~~v~~lvl 64 (335)
...+..+++.+...++++||=|-- --+-..+|.++|++|.++.+
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEEEE
Confidence 346777888888889999997744 34445678899999988765
No 254
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=66.48 E-value=6.6 Score=22.27 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17711 301 VMVSMMILMTLLTMFL 316 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~~ 316 (335)
+-.|++++|+++||++
T Consensus 21 G~~~ls~~m~~~tyli 36 (40)
T PF13106_consen 21 GFFGLSIFMILFTYLI 36 (40)
T ss_pred eHHHHHHHHHHHHHHH
Confidence 3467788888888875
No 255
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=66.45 E-value=38 Score=25.72 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=9.9
Q ss_pred hhhhHHHHHHhhHHhhhhhc
Q psy17711 262 EEEVKEEEERKKEEEKKKEE 281 (335)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~ 281 (335)
|-...-+.-+.+.+++++++
T Consensus 23 E~~a~le~Lr~~~ee~eY~~ 42 (142)
T PF11712_consen 23 ELKARLERLRAEQEEREYQR 42 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555
No 256
>PRK10279 hypothetical protein; Provisional
Probab=66.35 E-value=8.9 Score=33.39 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCc
Q psy17711 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD 57 (335)
Q Consensus 24 l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~ 57 (335)
+.+.++..|++.-.+.|-|+|+.++..||....+
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~~ 56 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACDRLS 56 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCChH
Confidence 3445566799989999999999999999986543
No 257
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=66.01 E-value=7.6 Score=23.84 Aligned_cols=19 Identities=26% Similarity=0.633 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhhHhhhh
Q psy17711 311 LLTMFLVLFGLGYYFSYLK 329 (335)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~ 329 (335)
.+|+|||++--||+|+--+
T Consensus 6 ~~ti~lvv~LYgY~yhLYr 24 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYR 24 (56)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4678899999999987544
No 258
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=65.83 E-value=7.4 Score=26.67 Aligned_cols=23 Identities=9% Similarity=0.301 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy17711 302 MVSMMILMTLLTMFLVLFGLGYY 324 (335)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~ 324 (335)
|.+++|+..++..|++++|..||
T Consensus 1 Mi~l~iv~~~~~v~~~i~~y~~~ 23 (87)
T PF10883_consen 1 MINLQIVGGVGAVVALILAYLWW 23 (87)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 45566655666556555554443
No 259
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=65.79 E-value=10 Score=29.78 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=25.8
Q ss_pred HHHHHHhCCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 25 EEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 25 ~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
.+.++..++..-.+.|-|.|+.++..++...+
T Consensus 17 l~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 17 AKALRERGPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 34444558888889999999999999998754
No 260
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=65.76 E-value=17 Score=34.03 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHh-C--CCcEEEEEechhHHHHHHHHHhCCchhceeeEecCCC
Q psy17711 19 QLVTSIEEWRKEL-K--LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 19 ~~~~dl~~ll~~l-g--~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~~~ 69 (335)
+.+.--.++++.+ | .+.-+..|.|-||.-++..|.+||+.++|++.-+|..
T Consensus 97 ~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~ 150 (474)
T PF07519_consen 97 ETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAI 150 (474)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchH
Confidence 3333444455444 3 3467899999999999999999999999999999864
No 261
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=64.83 E-value=14 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhhhhHhhh
Q psy17711 310 TLLTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ 328 (335)
--+.||++|.+|-|.++|.
T Consensus 13 ~T~fYf~Ill~L~ylYgy~ 31 (42)
T PF12459_consen 13 KTLFYFAILLALIYLYGYS 31 (42)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3456899999999999985
No 262
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=64.56 E-value=9.7 Score=23.79 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17711 296 MTLGIVMVSMMILMTLLTM 314 (335)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~ 314 (335)
++-.+.++|..|+..-+||
T Consensus 9 mtriVLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRLIY 27 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 263
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=62.91 E-value=5 Score=28.53 Aligned_cols=23 Identities=26% Similarity=0.788 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhh
Q psy17711 306 MILMTLLTMFLVLFGLGYYFSYLK 329 (335)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
+++++++|++++|+. -|||--|+
T Consensus 66 i~lls~v~IlVily~-IyYFVILR 88 (101)
T PF06024_consen 66 ISLLSFVCILVILYA-IYYFVILR 88 (101)
T ss_pred HHHHHHHHHHHHHhh-heEEEEEe
Confidence 455677777776665 45664443
No 264
>PHA00024 IX minor coat protein
Probab=62.69 E-value=9 Score=20.72 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhhhcc
Q psy17711 309 MTLLTMFLVLFGLGYYFSYLKTHFVK 334 (335)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
|-+|.+|+--+.|||-+.|=-+-|-|
T Consensus 2 ~~~l~~ffgA~ilG~~l~~~Il~FKk 27 (33)
T PHA00024 2 MSYLGYFFGAYILGWALFYGILVFKK 27 (33)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887775555543
No 265
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=62.43 E-value=13 Score=24.84 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=25.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGL 321 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (335)
.+..|.+.||..++=-+-+..++..|+++|.|
T Consensus 46 ~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa~ 77 (77)
T MTH00222 46 QQLFTYAILGFAISEAMGLFCLMMAFLILFAL 77 (77)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46668999998888777778888888888864
No 266
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=62.19 E-value=11 Score=32.85 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 23 SIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 23 dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
-+.+.++..|+++-.+.|-|+|+.++..+|..+.
T Consensus 28 GVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 28 GVLKALEEAGIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHHcCCCccEEEecCHHHHHHHHHHcCCC
Confidence 3455667788999999999999999999998653
No 267
>PRK00523 hypothetical protein; Provisional
Probab=61.81 E-value=15 Score=24.10 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy17711 304 SMMILMTLLTMFLVLFGLGYYF 325 (335)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~ 325 (335)
++.|++.+++ +++-+.+|||+
T Consensus 5 ~l~I~l~i~~-li~G~~~Gffi 25 (72)
T PRK00523 5 GLALGLGIPL-LIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444 44444455554
No 268
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=61.12 E-value=15 Score=30.32 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.5
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 26 EWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 26 ~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
..++..|++.-.++|-|.|+.++..+|...+
T Consensus 20 ~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 20 AALLEMGLEPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred HHHHHcCCCceEEEEeCHHHHHHHHHHcCCC
Confidence 3334457888889999999999999997553
No 269
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=61.01 E-value=14 Score=29.57 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=24.7
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 26 EWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 26 ~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
..++..++..-.++|-|.||.++..++...+
T Consensus 19 ~~L~e~~~~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 19 KALEEAGILKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred HHHHHcCCCcceEEEECHHHHHHHHHHcCCC
Confidence 3344567788889999999999999998543
No 270
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=60.63 E-value=9.5 Score=23.63 Aligned_cols=16 Identities=38% Similarity=0.773 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhh
Q psy17711 307 ILMTLLTMFLVLFGLG 322 (335)
Q Consensus 307 ~~~~~~~~~~~~~~~~ 322 (335)
+++..+|+|-||||..
T Consensus 3 ~~~~~il~~gVl~Gmq 18 (56)
T PF12438_consen 3 ILLVIILFFGVLLGMQ 18 (56)
T ss_pred hHHHHHHHHHHHHhHH
Confidence 5677888999999975
No 271
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=60.21 E-value=14 Score=31.61 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 24 l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+...+++.|+..-.+.|-|+|+.++..||...
T Consensus 28 VL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 44455667888888999999999999999864
No 272
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=59.79 E-value=11 Score=35.63 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=26.4
Q ss_pred HHHHH-HHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 24 IEEWR-KELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 24 l~~ll-~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
+..++ +..|++|-.++|||+|=..|+..|.-.
T Consensus 254 La~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 254 LTQLLCDEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHHhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 34455 578999999999999999999888755
No 273
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=58.12 E-value=18 Score=24.75 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=26.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGL 321 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (335)
.+..|.+.||..++--+.+..++..|+.+|.|
T Consensus 54 g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~~ 85 (85)
T PRK13471 54 GTITTRMLLADAVAETTGIYSLLIAFLILLVL 85 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45668899999999888889999999988864
No 274
>PLN02209 serine carboxypeptidase
Probab=57.56 E-value=21 Score=32.99 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=33.3
Q ss_pred HHHHHHHHHH----h---CCCcEEEEEechhHHHHHHHHHhC----------CchhceeeEecCCCC
Q psy17711 21 VTSIEEWRKE----L---KLQEMILLGHSFGGYLAFAYAIQY----------PDRVKHLILADPWGF 70 (335)
Q Consensus 21 ~~dl~~ll~~----l---g~~~~~lvGhS~Gg~ia~~~a~~~----------P~~v~~lvli~~~~~ 70 (335)
++|+..++.. . .-.+++|.|.|+||..+-.+|... +=.++|+++.++...
T Consensus 147 a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td 213 (437)
T PLN02209 147 VKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITH 213 (437)
T ss_pred HHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccC
Confidence 4555555443 3 235899999999999877777642 124678888887543
No 275
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=56.12 E-value=23 Score=32.66 Aligned_cols=51 Identities=16% Similarity=0.348 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHh---CCCcEEEEEechhHHHHHHHHHhC----------CchhceeeEecCCC
Q psy17711 19 QLVTSIEEWRKEL---KLQEMILLGHSFGGYLAFAYAIQY----------PDRVKHLILADPWG 69 (335)
Q Consensus 19 ~~~~dl~~ll~~l---g~~~~~lvGhS~Gg~ia~~~a~~~----------P~~v~~lvli~~~~ 69 (335)
++.+.+..++... .-.+++|.|.|+||..+-.+|... +-.++|+++-+|..
T Consensus 147 ~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t 210 (433)
T PLN03016 147 RTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVT 210 (433)
T ss_pred HHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCc
Confidence 3444444444333 236899999999999877776642 12577888888754
No 276
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=55.89 E-value=21 Score=28.14 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=24.5
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 26 EWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 26 ~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
..++..++..-.+.|-|.|+.++..++...+
T Consensus 20 ~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 20 RALEEEGIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHHHCCCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 3334557777789999999999999998754
No 277
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=54.90 E-value=20 Score=29.42 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 24 l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
+...+...|+..-.+.|.|.|+.++..+|...+
T Consensus 16 vl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 334455568777789999999999999999875
No 278
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=54.30 E-value=18 Score=22.96 Aligned_cols=15 Identities=40% Similarity=0.693 Sum_probs=12.2
Q ss_pred hhhhhHhhhhhhhcc
Q psy17711 320 GLGYYFSYLKTHFVK 334 (335)
Q Consensus 320 ~~~~~~~~~~~~~~~ 334 (335)
.|-|+-.||.+.||+
T Consensus 29 alkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 29 ALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHhh
Confidence 456888999999986
No 279
>PRK10332 hypothetical protein; Provisional
Probab=53.29 E-value=21 Score=25.59 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhc
Q psy17711 299 GIVMVSMMILMTLLTMFLVLFGLGYYFSYLKTHFV 333 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
|.-++=+||.|.|+.. ++.|+.-|+-+|...|.
T Consensus 10 GFsL~EvlvAm~i~~i--~~~al~~~~p~L~~~F~ 42 (107)
T PRK10332 10 GFSLPEVLLAMVLMVM--IVTALSGYQRTLMNSFA 42 (107)
T ss_pred CccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4555666777777666 66777777888877774
No 280
>PTZ00359 hypothetical protein; Provisional
Probab=53.19 E-value=8 Score=34.49 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhhhhhcc
Q psy17711 303 VSMMILMTLLTMFLVLFGLGYYFSYLKTHFVK 334 (335)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
+|++|++ | .+.|-.+|||-+|.|||+-|
T Consensus 77 LS~~Ill---~-yi~LH~lGYyC~yvktpls~ 104 (443)
T PTZ00359 77 LSIAICL---S-HLALHFLGYKCRFMKLHWTS 104 (443)
T ss_pred HHHHHHH---H-HHHHHHhccccceeecchhH
Confidence 6766654 3 34567899999999999754
No 281
>KOG4372|consensus
Probab=53.15 E-value=5.4 Score=35.72 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHh
Q psy17711 19 QLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
.+++++.+.+....++++..||||+||.++..+...
T Consensus 135 Rla~~~~e~~~~~si~kISfvghSLGGLvar~AIgy 170 (405)
T KOG4372|consen 135 RLAEEVKETLYDYSIEKISFVGHSLGGLVARYAIGY 170 (405)
T ss_pred ccHHHHhhhhhccccceeeeeeeecCCeeeeEEEEe
Confidence 445555555555557899999999999987655443
No 282
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=52.60 E-value=12 Score=34.28 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHhCCCcEEEEEechhHHHHHHHHHhCCchhce
Q psy17711 28 RKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKH 61 (335)
Q Consensus 28 l~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~ 61 (335)
+...|+.+-++.|-|.|+.+|..+|...++.+..
T Consensus 95 L~E~gl~p~vIsGTSaGAivAal~as~~~eel~~ 128 (421)
T cd07230 95 LFEANLLPRIISGSSAGSIVAAILCTHTDEEIPE 128 (421)
T ss_pred HHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHH
Confidence 3345777778999999999999999977665443
No 283
>PF13073 DUF3937: Protein of unknown function (DUF3937)
Probab=52.07 E-value=22 Score=22.44 Aligned_cols=20 Identities=25% Similarity=0.735 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhhHhhhhh
Q psy17711 311 LLTMFLVLFGLGYYFSYLKT 330 (335)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~ 330 (335)
++|...+=|.+||+-.|+++
T Consensus 15 fv~L~vi~FtigYfq~Yl~s 34 (73)
T PF13073_consen 15 FVFLSVIDFTIGYFQTYLES 34 (73)
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 46777788999999999986
No 284
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=51.39 E-value=37 Score=32.40 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=28.2
Q ss_pred EEEEEechhHHHHHHHHHhCC-chhceeeEecCCCCCC
Q psy17711 36 MILLGHSFGGYLAFAYAIQYP-DRVKHLILADPWGFPQ 72 (335)
Q Consensus 36 ~~lvGhS~Gg~ia~~~a~~~P-~~v~~lvli~~~~~~~ 72 (335)
++.-+.|=||..++..|.+.- ..|++++...|.....
T Consensus 287 VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~ 324 (690)
T PF10605_consen 287 VIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLP 324 (690)
T ss_pred EEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCC
Confidence 455578899999999988654 5899999988765443
No 285
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=50.78 E-value=55 Score=29.79 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=29.6
Q ss_pred CCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCcccccc
Q psy17711 178 HVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYAD 224 (335)
Q Consensus 178 ~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e 224 (335)
.--+|+|+|++|+...+... ..++..+..+.+.||++|...+.
T Consensus 351 ~~rmlFVYG~nDPW~A~~f~----l~~g~~ds~v~~~PggnHga~I~ 393 (448)
T PF05576_consen 351 GPRMLFVYGENDPWSAEPFR----LGKGKRDSYVFTAPGGNHGARIA 393 (448)
T ss_pred CCeEEEEeCCCCCcccCccc----cCCCCcceEEEEcCCCccccccc
Confidence 56789999999976332211 11222458889999999998764
No 286
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=50.31 E-value=37 Score=32.28 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEe------chhHHHHHHHHHhCCchhceeeEecCC
Q psy17711 17 ERQLVTSIEEWRKELKLQEMILLGH------SFGGYLAFAYAIQYPDRVKHLILADPW 68 (335)
Q Consensus 17 ~~~~~~dl~~ll~~lg~~~~~lvGh------S~Gg~ia~~~a~~~P~~v~~lvli~~~ 68 (335)
.+.+...+.+++.. .++++++|| +.|+.+++..-+..-++ .+.++++|.
T Consensus 323 aRvis~al~d~i~e--~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp~ 377 (655)
T COG3887 323 ARVISTALSDIIKE--SDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDPE 377 (655)
T ss_pred HHHHHHHHHHHHhh--cCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECcc
Confidence 35566666666665 579999999 78999998776665544 778888874
No 287
>KOG1283|consensus
Probab=50.24 E-value=19 Score=31.35 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHh-------CCCcEEEEEechhHHHHHHHHHhCCc---------hhceeeEecCCCCCCCC
Q psy17711 16 VERQLVTSIEEWRKEL-------KLQEMILLGHSFGGYLAFAYAIQYPD---------RVKHLILADPWGFPQKS 74 (335)
Q Consensus 16 ~~~~~~~dl~~ll~~l-------g~~~~~lvGhS~Gg~ia~~~a~~~P~---------~v~~lvli~~~~~~~~~ 74 (335)
...+++.|+.++++.+ ...|++|+..|.||-+|..++...-+ .+.+++|=+++..+...
T Consensus 97 ~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D~ 171 (414)
T KOG1283|consen 97 NNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPEDF 171 (414)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccChhHh
Confidence 4578999999999865 33589999999999999988875432 46677777776655443
No 288
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=50.15 E-value=36 Score=21.91 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17711 292 SVTFMTLGIVMVSMMILMTLLTMFLVLF 319 (335)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (335)
..+..-++.++.....+..|+..|+.+|
T Consensus 38 ~~~~~li~~~~~E~~~i~glv~~~~l~~ 65 (66)
T PF00137_consen 38 LFTKMLIGAAFIEALGIYGLVVALLLLF 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 6678888888888888889999888876
No 289
>PF10791 F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase subunit F of fungi; InterPro: IPR019727 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F found in the F0 complex of F-ATPases from fungal mitochondria. The membrane bound F1-FO-type H+ ATP synthase of mitochondria catalyses the terminal step in oxidative respiration converting the generation of the electrochemical gradient into ATP for cellular biosynthesis. The general structure and the core subunits of the enzyme are highly conserved in both prokaryotic and eukaryotic organisms.
Probab=50.09 E-value=15 Score=25.35 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhHhhh
Q psy17711 309 MTLLTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ 328 (335)
.|||-..+.+|++||...|-
T Consensus 72 kPllHli~~l~~iGYs~eYy 91 (95)
T PF10791_consen 72 KPLLHLIGGLFLIGYSIEYY 91 (95)
T ss_pred ccHHHHHHHHHHHHHHHHhH
Confidence 36777777888888877763
No 290
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=50.05 E-value=47 Score=18.89 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17711 300 IVMVSMMILMTLLTMF 315 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~ 315 (335)
..++=..+++|++.++
T Consensus 2 ~~~vEfalv~Pvl~~~ 17 (43)
T PF07811_consen 2 SATVEFALVLPVLLLL 17 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455666666543
No 291
>KOG1516|consensus
Probab=48.72 E-value=45 Score=31.78 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=34.2
Q ss_pred HHHHHHHH---HHHHHhCC--CcEEEEEechhHHHHHHHHHhC--CchhceeeEecCCC
Q psy17711 18 RQLVTSIE---EWRKELKL--QEMILLGHSFGGYLAFAYAIQY--PDRVKHLILADPWG 69 (335)
Q Consensus 18 ~~~~~dl~---~ll~~lg~--~~~~lvGhS~Gg~ia~~~a~~~--P~~v~~lvli~~~~ 69 (335)
.|....+. .-+...|- +++.|+|||.||..+..+...- ...+.++|.+++..
T Consensus 174 ~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 174 FDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 44444444 44555554 5799999999999987776532 24567777776543
No 292
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=48.67 E-value=30 Score=28.14 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=37.5
Q ss_pred hccHHHHHHHHHHHHHHhCCCcEEEEEech----hHHHHHHHHHhCC-chhceeeEe
Q psy17711 14 ETVERQLVTSIEEWRKELKLQEMILLGHSF----GGYLAFAYAIQYP-DRVKHLILA 65 (335)
Q Consensus 14 ~~~~~~~~~dl~~ll~~lg~~~~~lvGhS~----Gg~ia~~~a~~~P-~~v~~lvli 65 (335)
.|+.+.+++.+.+++++.+ ..++|+|+|. |..++-.+|++.- ..+..++-+
T Consensus 90 ~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l 145 (202)
T cd01714 90 GADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKI 145 (202)
T ss_pred CCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEE
Confidence 3455788999999888877 6799999988 8888888888753 234444444
No 293
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=48.41 E-value=20 Score=22.44 Aligned_cols=12 Identities=42% Similarity=0.982 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhh
Q psy17711 311 LLTMFLVLFGLG 322 (335)
Q Consensus 311 ~~~~~~~~~~~~ 322 (335)
|+|.|++|+.+.
T Consensus 28 Ll~fFVlL~s~s 39 (58)
T PF13677_consen 28 LLAFFVLLFSMS 39 (58)
T ss_pred HHHHHHHHHHHH
Confidence 467777777654
No 294
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=48.37 E-value=48 Score=26.21 Aligned_cols=19 Identities=21% Similarity=0.425 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhhHhhh
Q psy17711 310 TLLTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ 328 (335)
+++..+++||.+|++-+.+
T Consensus 127 si~~~~~~L~~~G~~~~~~ 145 (175)
T cd02437 127 AVAIVLAILFILGLVIGKI 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455667888999988765
No 295
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=47.96 E-value=34 Score=26.81 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=23.5
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHHhC
Q psy17711 26 EWRKELKLQEMILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 26 ~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~ 55 (335)
..++..++..-.+.|-|.|+.++..++...
T Consensus 20 ~~L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 20 KALEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 334455777778999999999999999754
No 296
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=47.92 E-value=34 Score=29.99 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCC---cE-EEEEechhHHHHHHHHHhC
Q psy17711 23 SIEEWRKELKLQ---EM-ILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 23 dl~~ll~~lg~~---~~-~lvGhS~Gg~ia~~~a~~~ 55 (335)
-+.++-+.+|.+ .+ .+.|-|+||.+|..+|..+
T Consensus 17 vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 17 MLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGK 53 (312)
T ss_pred HHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCC
Confidence 344444445643 23 4789999999999999754
No 297
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=47.88 E-value=16 Score=33.33 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceee
Q psy17711 23 SIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63 (335)
Q Consensus 23 dl~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lv 63 (335)
.+.++. ..|+.+-++.|-|.|+.+|..+|...++.+..++
T Consensus 85 VlkaL~-e~gllp~iI~GtSAGAivaalla~~t~~el~~~~ 124 (407)
T cd07232 85 VVKALL-DADLLPNVISGTSGGSLVAALLCTRTDEELKQLL 124 (407)
T ss_pred HHHHHH-hCCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHH
Confidence 333343 4477788899999999999999997766665553
No 298
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=47.77 E-value=42 Score=22.82 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy17711 296 MTLGIVMVSMMILMTLL 312 (335)
Q Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (335)
+++++..+||.+|+..|
T Consensus 9 ~gl~lMvlGMg~VfvFL 25 (82)
T PRK02919 9 EGFTLMFLGMGFVLAFL 25 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456667776654333
No 299
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=47.32 E-value=18 Score=32.75 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=28.9
Q ss_pred HHHHHhCCCcEEEEEechhHHHHHHHHHhCCchhceee
Q psy17711 26 EWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63 (335)
Q Consensus 26 ~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lv 63 (335)
..+...|+.+=++.|-|.|+.+|..+|..-++.+..+.
T Consensus 103 kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l 140 (391)
T cd07229 103 KALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFL 140 (391)
T ss_pred HHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHH
Confidence 34445677788899999999999999996665555444
No 300
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=47.27 E-value=8.4 Score=26.47 Aligned_cols=16 Identities=44% Similarity=0.895 Sum_probs=11.9
Q ss_pred HHHHHhhhhhHhhhhh
Q psy17711 315 FLVLFGLGYYFSYLKT 330 (335)
Q Consensus 315 ~~~~~~~~~~~~~~~~ 330 (335)
.+|.||--+|+|+-|.
T Consensus 24 l~vyfgrk~ylswakp 39 (126)
T PF13120_consen 24 LLVYFGRKFYLSWAKP 39 (126)
T ss_pred hhheecceeeeeecCh
Confidence 4567888889988663
No 301
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.83 E-value=42 Score=26.87 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhh
Q psy17711 303 VSMMILMTLLTMFLVLFGLGYYFSYLK 329 (335)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
+++.+.+.++...+|||++|+|+-..+
T Consensus 37 ~s~~lg~~~lAlg~vL~~~g~~~~~~~ 63 (191)
T PF04156_consen 37 ISFILGIALLALGVVLLSLGLLCLLSK 63 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455566667788999998875544
No 302
>COG4709 Predicted membrane protein [Function unknown]
Probab=46.67 E-value=54 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=18.4
Q ss_pred cccchhhcccccchhhhHHHHHHHHHHHHHHH
Q psy17711 281 EDGQHQQDKARSVTFMTLGIVMVSMMILMTLL 312 (335)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (335)
.+...+|.+.|..-+.-+|.+++...|++|++
T Consensus 69 ~~~~~~~~n~~~aii~~~~L~~~~v~i~Lpl~ 100 (195)
T COG4709 69 EEVKPTQKNVRRAIIALIGLGLLAVIIGLPLL 100 (195)
T ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666667777666666654
No 303
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=46.45 E-value=18 Score=31.59 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=25.4
Q ss_pred HHhCCCcEEEEEechhHHHHHHHHHhCCchhce
Q psy17711 29 KELKLQEMILLGHSFGGYLAFAYAIQYPDRVKH 61 (335)
Q Consensus 29 ~~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v~~ 61 (335)
...|+.+-++.|-|.|+.+|..++..-++.+..
T Consensus 91 ~e~gl~p~~i~GsSaGAivaa~~~~~t~~El~~ 123 (323)
T cd07231 91 VEHQLLPRVIAGSSVGSIVCAIIATRTDEELQS 123 (323)
T ss_pred HHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHH
Confidence 344777888999999999999999865544433
No 304
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=46.17 E-value=66 Score=22.81 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=11.4
Q ss_pred cchhhhHHHHHHHHHHHH
Q psy17711 292 SVTFMTLGIVMVSMMILM 309 (335)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~ 309 (335)
..-+..||+-|+..+++-
T Consensus 42 l~~~g~IG~~~v~pil~G 59 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLG 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345778887666665553
No 305
>COG4499 Predicted membrane protein [Function unknown]
Probab=46.07 E-value=36 Score=30.37 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=23.1
Q ss_pred HhhhhhcccchhhcccccchhhhHHHHHHHHHH
Q psy17711 275 EEKKKEEDGQHQQDKARSVTFMTLGIVMVSMMI 307 (335)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (335)
++.++....=+-.++.++.+|-.+||||..+.|
T Consensus 200 kE~e~~~kn~a~VpK~k~~ifk~~giGliillv 232 (434)
T COG4499 200 KETEKINKNYAFVPKKKYTIFKYFGIGLIILLV 232 (434)
T ss_pred HHHHHHhcceeecccccceehhhHHHhHHHHHH
Confidence 334444555667888999999999998754443
No 306
>KOG2521|consensus
Probab=45.88 E-value=1.1e+02 Score=27.40 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=52.6
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC-CCceEEEEeCCCCcccccc-ChHHHHHHHHHHhhhchhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYAD-RADVFNKMVNDTCTLSDEK 243 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~-~~~~~~~~i~~~gH~~~~e-~p~~~~~~I~~fl~~~~~~ 243 (335)
..+.+.+.+..|.+ +....+.+.+.... +.+++.+-+.++-|..+.. .|..+.+...+|+......
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~ 293 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISS 293 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcccc
Confidence 57788999999998 88888888665544 3346667777889999885 8999999999999987554
No 307
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=45.56 E-value=31 Score=32.06 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=28.2
Q ss_pred CcEEEEEechhHHHHHHHHHhCCc---hhceeeEecCCC
Q psy17711 34 QEMILLGHSFGGYLAFAYAIQYPD---RVKHLILADPWG 69 (335)
Q Consensus 34 ~~~~lvGhS~Gg~ia~~~a~~~P~---~v~~lvli~~~~ 69 (335)
.+.+|+|-|+||.-+..+|...-+ ..++++++.+..
T Consensus 198 ~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvl 236 (498)
T COG2939 198 SPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVL 236 (498)
T ss_pred CceeEeeccccchhhHHHHHHHHHhccccCCceEeeeee
Confidence 589999999999999999886554 367777776543
No 308
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=45.38 E-value=28 Score=21.09 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy17711 305 MMILMTLLTMFLVLFGLGYY 324 (335)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~ 324 (335)
|.+.|.|++.||+..-.-|.
T Consensus 28 M~~~m~lf~vfl~iiL~IyN 47 (52)
T PF00737_consen 28 MGVFMALFAVFLLIILEIYN 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44566677778877665554
No 309
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=45.34 E-value=37 Score=28.86 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=25.2
Q ss_pred HHHHHHhCCC-cEEEEEechhHHHHHHHHHhCCch
Q psy17711 25 EEWRKELKLQ-EMILLGHSFGGYLAFAYAIQYPDR 58 (335)
Q Consensus 25 ~~ll~~lg~~-~~~lvGhS~Gg~ia~~~a~~~P~~ 58 (335)
...+...++. .=.++|-|.|+.++..+++..+.+
T Consensus 17 l~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 17 LDAFLEAGIRPFDLVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred HHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCcch
Confidence 3334445666 558999999999999999876543
No 310
>KOG0860|consensus
Probab=44.77 E-value=35 Score=24.80 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Q psy17711 303 VSMMILMTLLTMFLVLFGLGYYF 325 (335)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~ 325 (335)
+-|+++|.+++..++++++-|.|
T Consensus 92 ~Km~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 92 CKMRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777766655
No 311
>PLN00126 succinate dehydrogenase, cytochrome b subunit family; Provisional
Probab=44.48 E-value=23 Score=25.44 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=25.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGL 321 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (335)
..|++.-.-|+++.+.+++.||.|-|-+.|++
T Consensus 98 ~lSI~HRITGvaLs~~illi~~~~~~~~~~~~ 129 (129)
T PLN00126 98 TFSISHRIFGAALGAAIISIPLATKFSLMFDV 129 (129)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhheecC
Confidence 35566667788888888999999999988863
No 312
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.24 E-value=39 Score=28.94 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCC---CcEEEEEechhHHHHHHHHH---hCCchhceeeEecCCCC
Q psy17711 19 QLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAI---QYPDRVKHLILADPWGF 70 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~---~~~~lvGhS~Gg~ia~~~a~---~~P~~v~~lvli~~~~~ 70 (335)
.+.+.+.+-++.+.. .+++|.|.|+|+.-+...-. ..-++++|.++.+|+..
T Consensus 91 aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~ 148 (289)
T PF10081_consen 91 ALFEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFF 148 (289)
T ss_pred HHHHHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCC
Confidence 344444444555533 36999999999876655433 33357999999998643
No 313
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=43.46 E-value=41 Score=22.36 Aligned_cols=30 Identities=17% Similarity=0.491 Sum_probs=23.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLF 319 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (335)
.+..|.+.||..++=-+.+..|+.-|+++|
T Consensus 44 ~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 44 DSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567789999988877777777777777776
No 314
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=43.09 E-value=61 Score=18.54 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17711 301 VMVSMMILMTLLTMFLV 317 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~~~ 317 (335)
.++-.+.+.-++..|||
T Consensus 14 ~~lQL~LL~FlL~fFLV 30 (44)
T PF08135_consen 14 FALQLLLLVFLLFFFLV 30 (44)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 315
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=42.16 E-value=74 Score=21.58 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy17711 296 MTLGIVMVSMMILMTLL 312 (335)
Q Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (335)
+++++..+||.+|...|
T Consensus 6 ~~~~l~v~GM~~VF~fL 22 (82)
T TIGR01195 6 EGATLTVLGMGIVFLFL 22 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556677777665443
No 316
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=41.09 E-value=8.6 Score=31.63 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=8.1
Q ss_pred hhhhhHhhhhh
Q psy17711 320 GLGYYFSYLKT 330 (335)
Q Consensus 320 ~~~~~~~~~~~ 330 (335)
|.+|||...|.
T Consensus 175 Ga~yYfK~~K~ 185 (218)
T PF14283_consen 175 GAYYYFKFYKP 185 (218)
T ss_pred ceEEEEEEecc
Confidence 77888877664
No 317
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=41.07 E-value=51 Score=23.32 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGLGY 323 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (335)
++..|.+.||..++=-+-+..++.-|+.+|...|
T Consensus 53 ~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~ 86 (101)
T PRK13464 53 GMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPL 86 (101)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677999999888877777888888888887653
No 318
>PF03283 PAE: Pectinacetylesterase
Probab=40.51 E-value=1.9e+02 Score=25.99 Aligned_cols=48 Identities=29% Similarity=0.343 Sum_probs=29.9
Q ss_pred HHHHHHHH-hC-CCcEEEEEechhHHHHHHHHH----hCCchhceeeEecCCCC
Q psy17711 23 SIEEWRKE-LK-LQEMILLGHSFGGYLAFAYAI----QYPDRVKHLILADPWGF 70 (335)
Q Consensus 23 dl~~ll~~-lg-~~~~~lvGhS~Gg~ia~~~a~----~~P~~v~~lvli~~~~~ 70 (335)
.+..++.. ++ .++++|-|.|.||.-++..+- ..|..++-..+.++..+
T Consensus 143 vl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f 196 (361)
T PF03283_consen 143 VLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFF 196 (361)
T ss_pred HHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEecccccc
Confidence 34444454 32 267999999999998876554 45654555555555443
No 319
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=40.05 E-value=49 Score=22.21 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFG 320 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (335)
.+..|.+.||..++=-+.+..|+..|+++|.
T Consensus 46 ~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 46 PMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667889999888877777888888888875
No 320
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=38.45 E-value=37 Score=20.67 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=9.4
Q ss_pred HHHHHHhhhhhHhhh
Q psy17711 314 MFLVLFGLGYYFSYL 328 (335)
Q Consensus 314 ~~~~~~~~~~~~~~~ 328 (335)
+..++|+++|.+.|-
T Consensus 29 ~~tivfa~~Y~~~yp 43 (51)
T PF14715_consen 29 YGTIVFAVGYLVLYP 43 (51)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344567777777664
No 321
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=37.72 E-value=51 Score=22.02 Aligned_cols=17 Identities=12% Similarity=0.667 Sum_probs=11.8
Q ss_pred hHH-HHHHHHHHHHHHHH
Q psy17711 297 TLG-IVMVSMMILMTLLT 313 (335)
Q Consensus 297 ~~~-~~~~~~~~~~~~~~ 313 (335)
-+| +.|++++|++.-+.
T Consensus 6 viGviLliaitVilaavv 23 (80)
T PF07790_consen 6 VIGVILLIAITVILAAVV 23 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467 88888887775443
No 322
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=37.44 E-value=57 Score=27.15 Aligned_cols=31 Identities=23% Similarity=0.068 Sum_probs=23.5
Q ss_pred HHHHHhCCC--cEEEEEechhHHHHHHHHHhCC
Q psy17711 26 EWRKELKLQ--EMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 26 ~ll~~lg~~--~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
+.+...|+. .-.+.|-|.|+.++..++...+
T Consensus 19 ~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 19 SLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 333445665 3479999999999999998764
No 323
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=36.47 E-value=24 Score=23.16 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhh
Q psy17711 311 LLTMFLVLFGLG 322 (335)
Q Consensus 311 ~~~~~~~~~~~~ 322 (335)
++|-++++|||+
T Consensus 31 ~vC~alllfGLn 42 (75)
T PRK15356 31 LVCLALLLAGLN 42 (75)
T ss_pred HHHHHHHHHhcC
Confidence 689999999986
No 324
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=36.23 E-value=77 Score=25.74 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhhhhHhhhhh
Q psy17711 300 IVMVSMMILMTLLTMFLVL--FGLGYYFSYLKT 330 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 330 (335)
++.+-|.-|+-|+|-||.| ..|.--.||||.
T Consensus 131 LIClIIIAVLfLICT~LfLSTVVLANKVS~LKr 163 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFLSTVVLANKVSSLKR 163 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667788877766 456677899986
No 325
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=36.18 E-value=58 Score=28.30 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.0
Q ss_pred HhCCCcEEEEEechhHHHHHHHHHhCCchh
Q psy17711 30 ELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59 (335)
Q Consensus 30 ~lg~~~~~lvGhS~Gg~ia~~~a~~~P~~v 59 (335)
..++.+-++.|-|.|+.+|..++....+.+
T Consensus 93 e~~l~~~~i~GtSaGAi~aa~~~~~~~~El 122 (298)
T cd07206 93 EQDLLPRVISGSSAGAIVAALLGTHTDEEL 122 (298)
T ss_pred HcCCCCCEEEEEcHHHHHHHHHHcCCcHHH
Confidence 356777789999999999999998655444
No 326
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=35.53 E-value=71 Score=19.46 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhhhHhhhhh
Q psy17711 311 LLTMFLVLFGLGYYFSYLKT 330 (335)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~ 330 (335)
.+..+|+++++.-++--+|+
T Consensus 9 piSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 9 PISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 34455556665555544443
No 327
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=35.52 E-value=82 Score=27.37 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHhhhhh
Q psy17711 297 TLGIVMVSMMIL---MTLLTMFLVLFGLGYY 324 (335)
Q Consensus 297 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 324 (335)
++-++.+|++++ ..+++.+|+++|+-+|
T Consensus 105 gl~L~~~g~~~l~~~vn~laa~l~~~gi~~Y 135 (304)
T COG0109 105 GLVLGVAGFSLLWFLVNLLAAVLGLFGIFFY 135 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555565555 5678889999988665
No 328
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=35.42 E-value=55 Score=21.94 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhhhHh
Q psy17711 307 ILMTLLTMFLVLFGLGYYFS 326 (335)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~ 326 (335)
+...|+.-|+|-||+|+.|.
T Consensus 10 i~~lL~iWf~vsfg~~~lf~ 29 (77)
T TIGR03647 10 IAVLLAIWFVVSFGAGILFA 29 (77)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 34456667777788777443
No 329
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=35.35 E-value=1.1e+02 Score=25.32 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=12.3
Q ss_pred cChHHHHHHHHHHhhhchh
Q psy17711 224 DRADVFNKMVNDTCTLSDE 242 (335)
Q Consensus 224 e~p~~~~~~I~~fl~~~~~ 242 (335)
+.-++.++.|..||.+...
T Consensus 166 at~~q~a~DVv~FL~w~ae 184 (219)
T PF02167_consen 166 ATVDQMAKDVVNFLAWAAE 184 (219)
T ss_dssp --HHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHHcC
Confidence 3456677788889888754
No 330
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.65 E-value=37 Score=22.17 Aligned_cols=20 Identities=40% Similarity=0.816 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHh--hhhhHh
Q psy17711 307 ILMTLLTMFLVLFG--LGYYFS 326 (335)
Q Consensus 307 ~~~~~~~~~~~~~~--~~~~~~ 326 (335)
.++++..+.||.+| +||.|.
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~k 25 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFK 25 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhhee
Confidence 45566666555554 577653
No 331
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=33.20 E-value=21 Score=24.11 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy17711 304 SMMILMTLLTMFLVLFG 320 (335)
Q Consensus 304 ~~~~~~~~~~~~~~~~~ 320 (335)
|+.-++-++...|+|||
T Consensus 5 g~~elliIlvivlllFG 21 (81)
T PRK04598 5 SIWQLLIIAVIVVLLFG 21 (81)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 44455555667788898
No 332
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=33.11 E-value=74 Score=26.69 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=18.4
Q ss_pred EEEEechhHHHHHHHHHhCC
Q psy17711 37 ILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 37 ~lvGhS~Gg~ia~~~a~~~P 56 (335)
.+.|-|.|+.++..+|...+
T Consensus 34 ~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 34 RIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred EEEEEcHHHHHHHHHHhCCC
Confidence 89999999999999999765
No 333
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=32.97 E-value=73 Score=22.82 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=26.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGLG 322 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (335)
.+..|.+.||..++=-+.+..|+..|+++|.-.
T Consensus 70 ~~i~~~~~ig~Al~Ea~~i~alvia~illf~np 102 (105)
T PRK08482 70 GKLMTTMFIALAMIEAQVIYALVIALIALYANP 102 (105)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566688999988887778888888888888643
No 334
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=32.93 E-value=1.3e+02 Score=30.09 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=22.2
Q ss_pred hhhHH-HHHHH---HHHHH--HHHHHHHHHHhhhhhHhh
Q psy17711 295 FMTLG-IVMVS---MMILM--TLLTMFLVLFGLGYYFSY 327 (335)
Q Consensus 295 ~~~~~-~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~ 327 (335)
.=.++ |+.+| +|.|+ ||+.++++++++++|+-|
T Consensus 651 ~w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~ 689 (742)
T PF05879_consen 651 PWMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY 689 (742)
T ss_pred HHHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 33445 44555 23333 788888888999999888
No 335
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=32.91 E-value=74 Score=29.69 Aligned_cols=61 Identities=18% Similarity=-0.021 Sum_probs=37.2
Q ss_pred CCCEEEEeeCCCCC-CCchhHHHHHHhcC----CCceEEEEeCCCCccccccChHHHHHHHHHHhhh
Q psy17711 178 HVPVTVIYGSRSWV-DNSSGDKIKEARSQ----NSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTL 239 (335)
Q Consensus 178 ~~PvLii~G~~D~~-~~~~~~~l~~~~~~----~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~ 239 (335)
+.+++..+|-.|.. ++-....-.+.++. .....+.+++ +||++..++|+...+.+..|+..
T Consensus 425 ~Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 425 KLKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred cceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHhh
Confidence 34555555555644 33333222222222 1124455666 69999999999999999888865
No 336
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=32.84 E-value=29 Score=23.16 Aligned_cols=13 Identities=38% Similarity=0.651 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhh
Q psy17711 311 LLTMFLVLFGLGY 323 (335)
Q Consensus 311 ~~~~~~~~~~~~~ 323 (335)
++|-++++||||=
T Consensus 43 ~vcea~llfGL~~ 55 (79)
T TIGR02498 43 LVCEAILLFGLNH 55 (79)
T ss_pred HHHHHHHHHhcCc
Confidence 5789999999874
No 337
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=32.62 E-value=1e+02 Score=21.09 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHH
Q psy17711 296 MTLGIVMVSMMILMT 310 (335)
Q Consensus 296 ~~~~~~~~~~~~~~~ 310 (335)
+++.+..+||.+|..
T Consensus 10 ~~~~lm~~GM~~VF~ 24 (85)
T PRK03814 10 DAATLMLTGMGVVFI 24 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344466666666553
No 338
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=32.29 E-value=75 Score=21.60 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=24.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGL 321 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (335)
.+..|.+.+|..++=-+.+..|+..+|++|..
T Consensus 47 g~l~~~m~ig~al~E~~ai~alviallllfa~ 78 (82)
T PRK13468 47 GTISRTLFVGLAMIESMAIYCFVVAMILLFAN 78 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567888888877777777888888877764
No 339
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=32.22 E-value=1.1e+02 Score=23.43 Aligned_cols=34 Identities=15% Similarity=0.520 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHH---------------HHHHHHHHhhhhhHhhhhh
Q psy17711 297 TLGIVMVSMMILMTL---------------LTMFLVLFGLGYYFSYLKT 330 (335)
Q Consensus 297 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 330 (335)
-+|+.++....++-. ...|+.++|..|.|+..++
T Consensus 24 NiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~ 72 (149)
T PF07158_consen 24 NIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQV 72 (149)
T ss_pred chHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 467777666654443 2479999999999998654
No 340
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=31.72 E-value=35 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.639 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17711 298 LGIVMVSMMILMTLLTM 314 (335)
Q Consensus 298 ~~~~~~~~~~~~~~~~~ 314 (335)
++++++|+++++.++..
T Consensus 3 i~~~~~g~~~ll~~v~~ 19 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVII 19 (75)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EehHHHHHHHHHHhhee
Confidence 34555555555544433
No 341
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=31.57 E-value=48 Score=28.12 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=12.8
Q ss_pred CCCcEEEEEechhHHH
Q psy17711 32 KLQEMILLGHSFGGYL 47 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~i 47 (335)
.++.++++|||+|..=
T Consensus 233 ~i~~I~i~GhSl~~~D 248 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEVD 248 (270)
T ss_pred CCCEEEEEeCCCchhh
Confidence 3468999999999753
No 342
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=31.49 E-value=96 Score=21.31 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=25.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGLG 322 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (335)
.+..|.+.+|..++=.+-+..|+..|+.+|...
T Consensus 48 ~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p 80 (86)
T TIGR03322 48 NTITRTLFVGLAMIESTAIYCFVVSMILIFANP 80 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688899988887777788888888777644
No 343
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=31.30 E-value=81 Score=20.44 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy17711 304 SMMILMTLLTMFL 316 (335)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (335)
-.+++.|++.+++
T Consensus 53 lvLv~ip~~l~~~ 65 (67)
T PRK13275 53 LLLVVVPPLLYGL 65 (67)
T ss_pred HHHHHHHHHHHHH
Confidence 3444556555554
No 344
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=31.15 E-value=53 Score=20.72 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhh
Q psy17711 305 MMILMTLLTMFLVLFGLGYYFSY 327 (335)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~ 327 (335)
|.+.|.|++.||++.---|.-|-
T Consensus 31 Mgv~m~Lf~vFl~iiLeIYNsSv 53 (64)
T PRK02624 31 MAVFMVLFLVFLLIILQIYNQSL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhCcce
Confidence 44566777888887766555443
No 345
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=30.86 E-value=71 Score=20.20 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=8.4
Q ss_pred HHHHHhhhhhHh
Q psy17711 315 FLVLFGLGYYFS 326 (335)
Q Consensus 315 ~~~~~~~~~~~~ 326 (335)
-|++|.|||.+-
T Consensus 14 ALIf~pLgyl~~ 25 (62)
T TIGR03493 14 ALIFFPLGYLAR 25 (62)
T ss_pred HHHHHhHHHHHH
Confidence 467788888753
No 346
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=30.86 E-value=96 Score=17.28 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhh
Q psy17711 307 ILMTLLTMFLVLFGLGYYFSYLK 329 (335)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~ 329 (335)
|+.||++..+=....+..|-|..
T Consensus 9 I~VPlVGlvfPai~Ma~lf~yIe 31 (36)
T CHL00186 9 ILVPLVGLVFPAIAMASLFLYIQ 31 (36)
T ss_pred hHHhHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555565553
No 347
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=30.67 E-value=71 Score=20.34 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=9.0
Q ss_pred HHHHHhhhhhHh
Q psy17711 315 FLVLFGLGYYFS 326 (335)
Q Consensus 315 ~~~~~~~~~~~~ 326 (335)
-|++|.|||+.-
T Consensus 14 AlI~~pLGyl~~ 25 (62)
T PF11120_consen 14 ALIFFPLGYLAR 25 (62)
T ss_pred HHHHHhHHHHHH
Confidence 467788999864
No 348
>PF15566 Imm18: Immunity protein 18
Probab=30.63 E-value=58 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHH
Q psy17711 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYL 47 (335)
Q Consensus 18 ~~~~~dl~~ll~~lg~~~~~lvGhS~Gg~i 47 (335)
+-+++++..+......+.++++--||||--
T Consensus 5 ~~L~~~l~~L~~~~~~~H~Hlmtp~WgG~E 34 (52)
T PF15566_consen 5 ELLQDQLENLQEKEPFDHEHLMTPDWGGEE 34 (52)
T ss_pred HHHHHHHHHHHhccCCCCceeccccccccc
Confidence 567778888888776778999999999863
No 349
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=30.62 E-value=54 Score=21.48 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhh
Q psy17711 305 MMILMTLLTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~ 328 (335)
|.+.|.|++.||++.---|.-|-|
T Consensus 43 Mg~~m~lf~vfl~iileiyNssvl 66 (73)
T PLN00055 43 MGVAMALFAVFLSIILEIYNSSVL 66 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhcccee
Confidence 456677788888887666655443
No 350
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=30.56 E-value=1.2e+02 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.581 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy17711 299 GIVMVSMMILMTLLTMFLVLFGLGYYF 325 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (335)
+++++.+..++.++.+++.++++.+++
T Consensus 37 ~~~~~~~a~vl~~~~l~~l~~al~~~l 63 (121)
T PF07332_consen 37 GLALLVLAAVLALLALLFLLVALVFAL 63 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555
No 351
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=30.34 E-value=97 Score=26.61 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=24.1
Q ss_pred HHHHHHHHhCC-CcEEEEEechhHHHHHHHHHh
Q psy17711 23 SIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 23 dl~~ll~~lg~-~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
....+++.... ++++++|.|-|+..|-.+|..
T Consensus 80 ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 80 AYRFLSKNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred HHHHHHhccCCcceEEEEecCccHHHHHHHHHH
Confidence 34444455533 679999999999999999965
No 352
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=30.21 E-value=50 Score=25.06 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q psy17711 300 IVMVSMMILMTLL 312 (335)
Q Consensus 300 ~~~~~~~~~~~~~ 312 (335)
|.+++.|++++++
T Consensus 122 ilaisvtvv~~il 134 (154)
T PF14914_consen 122 ILAISVTVVVMIL 134 (154)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666654433
No 353
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=30.13 E-value=59 Score=27.35 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.3
Q ss_pred EEEEEechhHHHHHHHHHhCCchh
Q psy17711 36 MILLGHSFGGYLAFAYAIQYPDRV 59 (335)
Q Consensus 36 ~~lvGhS~Gg~ia~~~a~~~P~~v 59 (335)
-.+.|-|.|+.++..+|. .|+++
T Consensus 33 ~~i~GtSaGAl~aa~~a~-~~~~~ 55 (246)
T cd07222 33 KRFAGASAGSLVAAVLLT-APEKI 55 (246)
T ss_pred CEEEEECHHHHHHHHHhc-ChHHH
Confidence 379999999999999984 35433
No 354
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=29.97 E-value=44 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy17711 304 SMMILMTLLTMFLVLFG 320 (335)
Q Consensus 304 ~~~~~~~~~~~~~~~~~ 320 (335)
|+.=++-++...|+|||
T Consensus 5 G~~eLlIIlvIvLLlFG 21 (89)
T PRK03554 5 SIWQLLIIAVIVVLLFG 21 (89)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 34445555666788998
No 355
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=29.94 E-value=96 Score=23.83 Aligned_cols=25 Identities=28% Similarity=0.184 Sum_probs=19.6
Q ss_pred HHHhCC--CcEEEEEechhHHHHHHHH
Q psy17711 28 RKELKL--QEMILLGHSFGGYLAFAYA 52 (335)
Q Consensus 28 l~~lg~--~~~~lvGhS~Gg~ia~~~a 52 (335)
++..++ ..-++.|.|.|+.++..++
T Consensus 20 l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 20 LAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 344455 5567889999999999999
No 356
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=29.61 E-value=50 Score=17.72 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhhhhHhhh
Q psy17711 309 MTLLTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ 328 (335)
.||++..+=....+..|-|.
T Consensus 8 VPlVglvfPai~Ma~lf~yI 27 (31)
T TIGR03052 8 VPLVGLVFPAVFMALLFRYI 27 (31)
T ss_pred hhHHHHHHHHHHHHHHHHhe
Confidence 34444443333344444443
No 357
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=29.53 E-value=25 Score=23.24 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy17711 304 SMMILMTLLTMFLVLFG 320 (335)
Q Consensus 304 ~~~~~~~~~~~~~~~~~ 320 (335)
|+.=++-++...|++||
T Consensus 5 s~~ellIIlvIvlLlFG 21 (75)
T PRK04561 5 SIWHWLVVLVIVLLVFG 21 (75)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 44444555556788898
No 358
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=29.47 E-value=1.2e+02 Score=19.69 Aligned_cols=23 Identities=22% Similarity=0.480 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy17711 300 IVMVSMMILMTLLTMFLVLFGLG 322 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~ 322 (335)
|+.+=-.|+--++||.+++.+.+
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45444444555667777766554
No 359
>CHL00066 psbH photosystem II protein H
Probab=29.28 E-value=57 Score=21.34 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhh
Q psy17711 305 MMILMTLLTMFLVLFGLGYYFSY 327 (335)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~ 327 (335)
|.+.|.|++.||++.---|.-|-
T Consensus 43 Mgv~m~lf~vfl~iiLeiyNssv 65 (73)
T CHL00066 43 MGVAMALFAVFLSIILEIYNSSV 65 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhCcce
Confidence 45566778888887766665443
No 360
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=28.95 E-value=76 Score=18.74 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhHhhhh
Q psy17711 314 MFLVLFGLGYYFSYLK 329 (335)
Q Consensus 314 ~~~~~~~~~~~~~~~~ 329 (335)
.++++.+++-++--+|
T Consensus 11 l~l~~~~l~~f~Wavk 26 (45)
T PF03597_consen 11 LILGLIALAAFLWAVK 26 (45)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344444444433333
No 361
>KOG4473|consensus
Probab=28.80 E-value=66 Score=26.29 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=8.5
Q ss_pred hHhhhhhhhcc
Q psy17711 324 YFSYLKTHFVK 334 (335)
Q Consensus 324 ~~~~~~~~~~~ 334 (335)
.|.|+++|+-|
T Consensus 208 ~fG~~ga~lg~ 218 (247)
T KOG4473|consen 208 MFGYVGAHLGK 218 (247)
T ss_pred HHHHHHHHhcC
Confidence 57789999854
No 362
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=28.73 E-value=68 Score=27.31 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCcE-EEEEechhHHHHHHHHHhCCchhceeeE
Q psy17711 21 VTSIEEWRKELKLQEM-ILLGHSFGGYLAFAYAIQYPDRVKHLIL 64 (335)
Q Consensus 21 ~~dl~~ll~~lg~~~~-~lvGhS~Gg~ia~~~a~~~P~~v~~lvl 64 (335)
|-.+.++++.-. .++ .++|-|+|+.-+..|.+..|.+-+++++
T Consensus 27 AGVLD~fl~a~~-~~f~~~~GvSAGA~n~~aYls~Q~gra~~~~~ 70 (292)
T COG4667 27 AGVLDEFLRANF-NPFDLVVGVSAGALNLVAYLSKQRGRARRVIV 70 (292)
T ss_pred HHHHHHHHHhcc-CCcCeeeeecHhHHhHHHHhhcCCchHHHHHH
Confidence 345556664433 344 4789999999999999999987666664
No 363
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.56 E-value=1.9e+02 Score=22.88 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q psy17711 297 TLGIVMVSMMIL 308 (335)
Q Consensus 297 ~~~~~~~~~~~~ 308 (335)
.+|+.++++.++
T Consensus 85 ~i~l~~~~~~~v 96 (181)
T PF08006_consen 85 IIGLGLLSFIIV 96 (181)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 364
>PF09446 VMA21: VMA21-like domain; InterPro: IPR019013 The vacuolar ATPase assembly integral membrane protein VMA21 is required for the assembly of the integral membrane sector (V0 component) of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum []. This entry represents a putative short domain found in VMA21-like proteins, and which appears to contain two potential transmembrane helices.
Probab=28.35 E-value=1.1e+02 Score=19.72 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy17711 301 VMVSMMILMTLLTMFLVLFGL 321 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (335)
..-..|+++|+.+||..-.-+
T Consensus 10 ~fs~~M~~lPl~~ff~~~~~~ 30 (66)
T PF09446_consen 10 FFSVLMFTLPLGTFFGFKYFL 30 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999765443
No 365
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=28.33 E-value=84 Score=24.69 Aligned_cols=27 Identities=30% Similarity=0.243 Sum_probs=13.1
Q ss_pred hhhcccchhhcccccchhhhHHHHHHH
Q psy17711 278 KKEEDGQHQQDKARSVTFMTLGIVMVS 304 (335)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (335)
++++..+++++++.+-.-..+-|+.+|
T Consensus 4 ~~~~~eq~~~~~~~s~~~~~~~iGf~g 30 (173)
T PF11085_consen 4 EKERLEQNQREKPMSFLAKVLEIGFFG 30 (173)
T ss_pred hhhhhhhcccCCCCcHHHHHHHHHHHH
Confidence 334444455666666544444444433
No 366
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=28.27 E-value=80 Score=27.69 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.9
Q ss_pred CCCcEEEEEechhHHHHHHHHH
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAI 53 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~ 53 (335)
+.++.++.|||+|=..|+..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4788899999999998887766
No 367
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=27.98 E-value=1e+02 Score=25.97 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=22.9
Q ss_pred HHHHHHHHhC-CCcEEEEEechhHHHHHHHHHhCC
Q psy17711 23 SIEEWRKELK-LQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 23 dl~~ll~~lg-~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
.+.++.++-. ...-.+.|-|.|+.+|..+|...+
T Consensus 18 Vl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 18 VAVCLKKYAPHLLLNKISGASAGALAACCLLCDLP 52 (245)
T ss_pred HHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCc
Confidence 3444444421 223349999999999999998765
No 368
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=27.97 E-value=1.1e+02 Score=20.76 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=25.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFG 320 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (335)
.+..+.+.||.+++--+.+..|+..++.+|.
T Consensus 47 ~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 47 GKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566889999888888888888888888775
No 369
>PRK09459 pspG phage shock protein G; Reviewed
Probab=27.82 E-value=1.2e+02 Score=20.03 Aligned_cols=8 Identities=25% Similarity=0.816 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy17711 299 GIVMVSMM 306 (335)
Q Consensus 299 ~~~~~~~~ 306 (335)
||-++|++
T Consensus 18 GiSllgv~ 25 (76)
T PRK09459 18 GISLLGII 25 (76)
T ss_pred hHHHHHHH
Confidence 33333333
No 370
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=27.54 E-value=14 Score=26.53 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=2.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q psy17711 294 TFMTLGIVMVSMMILMTLLT 313 (335)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~ 313 (335)
--.||||..|-..||+-+-|
T Consensus 25 EAaGIGiL~VILgiLLliGC 44 (118)
T PF14991_consen 25 EAAGIGILIVILGILLLIGC 44 (118)
T ss_dssp ---SSS--------------
T ss_pred HhccceeHHHHHHHHHHHhh
Confidence 34678866655555443333
No 371
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=27.06 E-value=1.1e+02 Score=25.91 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCC----cEEEEEechhHHHHHHHHHhCC
Q psy17711 23 SIEEWRKELKLQ----EMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 23 dl~~ll~~lg~~----~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
-+.++.++ +.+ .-.++|-|.|+.++..++...+
T Consensus 18 Vl~aL~e~-~~~l~~~~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 18 VTRCLSER-APHLLRDARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred HHHHHHHh-CcchhccCCEEEEEcHHHHHHHHHHhCCC
Confidence 44455554 433 4569999999999999998765
No 372
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=27.00 E-value=98 Score=24.76 Aligned_cols=9 Identities=56% Similarity=0.803 Sum_probs=7.3
Q ss_pred hhhhhhhcc
Q psy17711 326 SYLKTHFVK 334 (335)
Q Consensus 326 ~~~~~~~~~ 334 (335)
.-||.||.|
T Consensus 178 kllkKHF~K 186 (186)
T PF09605_consen 178 KLLKKHFEK 186 (186)
T ss_pred HHHHHhcCC
Confidence 458999987
No 373
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=26.95 E-value=98 Score=20.71 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCCcEEEEEechhHHHHHHHHHhCC
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
|.+++.++|-|-|=.+|.+.++.+-
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg 62 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFG 62 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHC
T ss_pred CCceEEEEecCCcccHHHHHHHHhc
Confidence 4478999999999999988887653
No 374
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=26.93 E-value=1e+02 Score=20.76 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=22.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFG 320 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (335)
.+..+.+.+|..+.--+.+..++..|+++|.
T Consensus 48 g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 48 GKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556778888777777777777777777763
No 375
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=26.54 E-value=55 Score=21.65 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy17711 303 VSMMILMTLLTMFLVLFG 320 (335)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~ 320 (335)
+|+.=++-++...|+|||
T Consensus 4 ~g~~elliIl~IvlllFG 21 (73)
T PRK02958 4 FSIWHWLIVLVIVVLVFG 21 (73)
T ss_pred ccHHHHHHHHHHHHHHhC
Confidence 344455556667888998
No 376
>PHA00724 hypothetical protein
Probab=26.52 E-value=1.2e+02 Score=19.58 Aligned_cols=17 Identities=18% Similarity=0.657 Sum_probs=12.3
Q ss_pred HHHHHhhhhhHhhhhhh
Q psy17711 315 FLVLFGLGYYFSYLKTH 331 (335)
Q Consensus 315 ~~~~~~~~~~~~~~~~~ 331 (335)
-+-|.-++|+|.+||..
T Consensus 65 ~fgl~n~~fffnwlree 81 (83)
T PHA00724 65 AFGLINFAFFFNWLREE 81 (83)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455678999999863
No 377
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=25.91 E-value=1.1e+02 Score=25.84 Aligned_cols=33 Identities=15% Similarity=-0.036 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCC----cEEEEEechhHHHHHHHHHhCC
Q psy17711 23 SIEEWRKELKLQ----EMILLGHSFGGYLAFAYAIQYP 56 (335)
Q Consensus 23 dl~~ll~~lg~~----~~~lvGhS~Gg~ia~~~a~~~P 56 (335)
.+.+++++ ++. .-.+.|-|.|+.++..++...+
T Consensus 22 Vl~~L~e~-g~~l~~~~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 22 VASCLLEH-APFLVANARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred HHHHHHhc-CCcccccCCeEEEEcHHHHHHHHHHcCCC
Confidence 44445444 433 4568899999999999998765
No 378
>KOG2442|consensus
Probab=25.63 E-value=16 Score=33.55 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCCEEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeC
Q psy17711 178 HVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVT 215 (335)
Q Consensus 178 ~~PvLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~ 215 (335)
++|+.+|+= +..+.+.+...+++++++..+.
T Consensus 147 ~IPv~mi~~-------~~~~~l~~~~~~~~~V~~~lYa 177 (541)
T KOG2442|consen 147 TIPVAMISY-------SDGRDLNKSTRSNDNVELALYA 177 (541)
T ss_pred cceEEEEEh-------hhHHHHHhhhccCCeEEEEEEC
Confidence 788888853 2334444333333556666664
No 379
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=25.63 E-value=1.1e+02 Score=20.91 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=8.3
Q ss_pred HHHHHHhhhhhHh
Q psy17711 314 MFLVLFGLGYYFS 326 (335)
Q Consensus 314 ~~~~~~~~~~~~~ 326 (335)
.+-..+|+|||..
T Consensus 68 li~~~~G~g~y~~ 80 (84)
T PF09716_consen 68 LIATALGYGYYKK 80 (84)
T ss_pred HHHHHHHHHHHhh
Confidence 3445678888753
No 380
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=25.44 E-value=50 Score=20.65 Aligned_cols=18 Identities=33% Similarity=0.432 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy17711 303 VSMMILMTLLTMFLVLFG 320 (335)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~ 320 (335)
.+=.||+.|||.-||.+.
T Consensus 2 A~Kl~vialLC~aLva~v 19 (65)
T PF10731_consen 2 ASKLIVIALLCVALVAIV 19 (65)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 344688999999998864
No 381
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=25.43 E-value=70 Score=36.83 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHh
Q psy17711 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQ 54 (335)
Q Consensus 24 l~~ll~~lg~~~~~lvGhS~Gg~ia~~~a~~ 54 (335)
+..++..+|+++-.++|||+|=..|+..|..
T Consensus 664 l~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAGv 694 (2582)
T TIGR02813 664 QYKLFTQAGFKADMTAGHSFGELSALCAAGV 694 (2582)
T ss_pred HHHHHHHcCCccceeecCCHHHHHHHHHhCC
Confidence 4455678899999999999999988877643
No 382
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.34 E-value=68 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=17.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHH
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMF 315 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (335)
.|..-+--+|++++.+.|.|+..|+-
T Consensus 196 kR~i~f~llgllfliiaigltvGT~~ 221 (256)
T PF09788_consen 196 KRAIIFFLLGLLFLIIAIGLTVGTWT 221 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 45556666777777777777777754
No 383
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=25.21 E-value=51 Score=21.30 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhh
Q psy17711 311 LLTMFLVLFGLGY 323 (335)
Q Consensus 311 ~~~~~~~~~~~~~ 323 (335)
++|-.+++||||=
T Consensus 30 ~~c~alllfGL~~ 42 (66)
T PF06287_consen 30 AVCEALLLFGLGE 42 (66)
T ss_pred HHHHHHHHHHcCC
Confidence 5688899999873
No 384
>PF13055 DUF3917: Protein of unknown function (DUF3917)
Probab=24.88 E-value=28 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=13.6
Q ss_pred ccchhhhHH--HHHHHHHHHHHH
Q psy17711 291 RSVTFMTLG--IVMVSMMILMTL 311 (335)
Q Consensus 291 ~~~~~~~~~--~~~~~~~~~~~~ 311 (335)
.+..+.+|| ..+-|||++|..
T Consensus 38 ~s~~~~fi~itlfags~mvlmva 60 (71)
T PF13055_consen 38 WSTSLVFIGITLFAGSIMVLMVA 60 (71)
T ss_pred eeeeeeeeehHHHhchHHHHHHh
Confidence 344667777 455678888753
No 385
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=24.84 E-value=2.2e+02 Score=24.83 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhhhHhh--hhh
Q psy17711 312 LTMFLVLFGLGYYFSY--LKT 330 (335)
Q Consensus 312 ~~~~~~~~~~~~~~~~--~~~ 330 (335)
+|.++.++++.|-+-| +|.
T Consensus 118 l~~~l~~~~~~~~~~Y~~~KR 138 (294)
T PRK12873 118 LCLSLAFLALPPILIYPSAKR 138 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 4666666665554444 665
No 386
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=24.78 E-value=1.3e+02 Score=26.40 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCC-CcEEEEEechhHHHHHHHHHhCCchhceeeEecC
Q psy17711 22 TSIEEWRKELKL-QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67 (335)
Q Consensus 22 ~dl~~ll~~lg~-~~~~lvGhS~Gg~ia~~~a~~~P~~v~~lvli~~ 67 (335)
....-++.+... +.+++.|+|-|+.+|--+|.. |+.+-+++.
T Consensus 109 ~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm----ir~vGlls~ 151 (423)
T COG3673 109 EAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM----IRHVGLLSR 151 (423)
T ss_pred HHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHH----HHHhhhhcc
Confidence 344445566543 789999999999999998876 555656553
No 387
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=24.65 E-value=1.4e+02 Score=16.57 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhh
Q psy17711 310 TLLTMFLVLFGLGY 323 (335)
Q Consensus 310 ~~~~~~~~~~~~~~ 323 (335)
+.+..|.-||-.|+
T Consensus 10 ~vV~ffv~LFifGf 23 (36)
T PF02532_consen 10 TVVIFFVSLFIFGF 23 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhccc
Confidence 34444545554443
No 388
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=24.64 E-value=1.9e+02 Score=18.08 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy17711 301 VMVSMMILMTLLTMFLVLFGLG 322 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~ 322 (335)
++-+.++.++++.-.+.+++++
T Consensus 28 ~Ly~~Tm~L~~~gt~~~l~~l~ 49 (56)
T PF02238_consen 28 ILYRVTMPLTVAGTSYCLYGLG 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 389
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=24.63 E-value=88 Score=20.12 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q psy17711 306 MILMTLLTMFL 316 (335)
Q Consensus 306 ~~~~~~~~~~~ 316 (335)
+|+.|++.+||
T Consensus 55 lV~IP~ll~~l 65 (65)
T TIGR02507 55 LVAVPIAMKFL 65 (65)
T ss_pred HHHHHHHHHhC
Confidence 46667666553
No 390
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=24.60 E-value=1.2e+02 Score=20.51 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=25.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFGLG 322 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (335)
.+..|.+.||..+.--+.+..|+..++++|...
T Consensus 47 ~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p 79 (81)
T CHL00061 47 GKIRGTLLLSLAFMEALTIYGLVVALALLFANP 79 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456688899988887777788888888888654
No 391
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.45 E-value=1.4e+02 Score=19.51 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=7.1
Q ss_pred HHHHHhhhhhHh
Q psy17711 315 FLVLFGLGYYFS 326 (335)
Q Consensus 315 ~~~~~~~~~~~~ 326 (335)
+|+-+.+|||++
T Consensus 14 ll~G~~~G~fia 25 (71)
T COG3763 14 LLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHH
Confidence 444555677764
No 392
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=24.13 E-value=2.3e+02 Score=19.03 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhh
Q psy17711 313 TMFLVLFGLGYY 324 (335)
Q Consensus 313 ~~~~~~~~~~~~ 324 (335)
.-|+|+++..+|
T Consensus 70 ~G~~v~~~~~~~ 81 (82)
T PF11239_consen 70 AGFVVMVAGAVW 81 (82)
T ss_pred HHHHHHHHHHHh
Confidence 455666665554
No 393
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=24.06 E-value=81 Score=28.01 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=20.3
Q ss_pred HHHHHhCCCc------EEEEEechhHHHHHHHHHhC
Q psy17711 26 EWRKELKLQE------MILLGHSFGGYLAFAYAIQY 55 (335)
Q Consensus 26 ~ll~~lg~~~------~~lvGhS~Gg~ia~~~a~~~ 55 (335)
.++...|+.+ -.++|||+|-..|+..|...
T Consensus 110 ~~l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~AG~l 145 (343)
T PLN02752 110 EKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGAL 145 (343)
T ss_pred HHHHhcCCCcccccCCCeeeeccHHHHHHHHHhCCC
Confidence 3445556432 35799999999888877543
No 394
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=24.06 E-value=1.2e+02 Score=26.79 Aligned_cols=24 Identities=29% Similarity=0.701 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhh
Q psy17711 305 MMILMTLLTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~ 328 (335)
..+..||+.||+..|.++|..+|.
T Consensus 247 ~liAIpl~iy~~~~~~i~~~i~k~ 270 (342)
T COG0798 247 LLIAIPLLIYFLLMFFISYFIAKA 270 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999988875
No 395
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.86 E-value=1.6e+02 Score=20.38 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=6.5
Q ss_pred HHHHHHHhhhhhHhh
Q psy17711 313 TMFLVLFGLGYYFSY 327 (335)
Q Consensus 313 ~~~~~~~~~~~~~~~ 327 (335)
.+++++.++++++++
T Consensus 20 ~~~v~~~a~~~v~~~ 34 (97)
T PF04999_consen 20 VIVVLISALGVVYSR 34 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 396
>COG3601 Predicted membrane protein [Function unknown]
Probab=23.86 E-value=1.1e+02 Score=24.33 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=19.3
Q ss_pred cchhhhHH--HHHHHHHHHHHHHHHHHHH
Q psy17711 292 SVTFMTLG--IVMVSMMILMTLLTMFLVL 318 (335)
Q Consensus 292 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 318 (335)
+....-.| .+.+.|+++|-++-||+.|
T Consensus 102 s~~~~i~~~llgti~~t~~m~~LNY~~aL 130 (186)
T COG3601 102 STKNLIVGLLLGTIAMTVVMSLLNYFFAL 130 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556 6778889999999887654
No 397
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=23.81 E-value=72 Score=24.77 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=22.4
Q ss_pred hccHHHHHHHH----HHHHHHhCC----CcEEEEEechhHH
Q psy17711 14 ETVERQLVTSI----EEWRKELKL----QEMILLGHSFGGY 46 (335)
Q Consensus 14 ~~~~~~~~~dl----~~ll~~lg~----~~~~lvGhS~Gg~ 46 (335)
.++.++++.-+ ..+.+..+. +++.|+|-|+++.
T Consensus 76 g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 76 GYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp TEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 45668888888 555555533 5789999998877
No 398
>KOG4631|consensus
Probab=23.71 E-value=74 Score=21.82 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhHhhhh
Q psy17711 312 LTMFLVLFGLGYYFSYLK 329 (335)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ 329 (335)
+|.|+++.+.-|++.|++
T Consensus 73 faaf~a~v~vEyal~~~~ 90 (100)
T KOG4631|consen 73 FAAFVAAVGVEYALESLN 90 (100)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 588999999999999987
No 399
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=23.49 E-value=1.3e+02 Score=24.25 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhhhhhcc
Q psy17711 303 VSMMILMTLLTMFLVLFGLGYYFSYLKTHFVK 334 (335)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
+.++++.+++|- ++|--.--.-||.||.|
T Consensus 161 ~~~~~~~t~v~~---~iG~~iG~kllkKHF~K 189 (189)
T TIGR02185 161 AVIMIVLTAVAG---IAGVLIGKKLLKKHFEK 189 (189)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhcCC
Confidence 334444444444 33433344679999987
No 400
>PF07667 DUF1600: Protein of unknown function (DUF1600); InterPro: IPR011631 These proteins appear to be specific to Mycoplasma species. They are of unknown function.
Probab=23.47 E-value=86 Score=22.80 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhhHhhh
Q psy17711 310 TLLTMFLVLFGLGYYFSYL 328 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~ 328 (335)
-+.+|+|++|++.|...|.
T Consensus 87 ~~~~~~fi~~p~S~ii~~~ 105 (114)
T PF07667_consen 87 VFAVMLFIYFPLSYIIFYI 105 (114)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4568888999888877544
No 401
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=23.27 E-value=1.2e+02 Score=23.06 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHH
Q psy17711 19 QLVTSIEEWRKELKLQEMILLGHSFGGY 46 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ 46 (335)
+....+.-.+..++.+.++++||+-=|+
T Consensus 41 ~~~~sl~~av~~l~~~~IiV~gHt~Cg~ 68 (142)
T cd03379 41 DAIRSLVVSVYLLGTREIIVIHHTDCGM 68 (142)
T ss_pred hHHHHHHHHHHHhCCCEEEEEeecCCcc
Confidence 4556677777889999999999974333
No 402
>KOG3145|consensus
Probab=23.23 E-value=1.7e+02 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.439 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HhhhhhHhhhhh
Q psy17711 298 LGIVMVSMMILMTLLTMFLVL------FGLGYYFSYLKT 330 (335)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 330 (335)
|.++.+.+.-+.+.+||++.. ..+-++|||+|-
T Consensus 234 ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl 272 (372)
T KOG3145|consen 234 IALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKL 272 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 566666677778888888754 344678899884
No 403
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=23.07 E-value=1.3e+02 Score=19.03 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy17711 300 IVMVSMMI 307 (335)
Q Consensus 300 ~~~~~~~~ 307 (335)
++.-...|
T Consensus 35 ~l~a~~~I 42 (66)
T PF11100_consen 35 ILEAVFFI 42 (66)
T ss_pred HHHHHHHH
Confidence 44433333
No 404
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=22.85 E-value=85 Score=22.12 Aligned_cols=8 Identities=13% Similarity=0.679 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q psy17711 314 MFLVLFGL 321 (335)
Q Consensus 314 ~~~~~~~~ 321 (335)
+|+++|++
T Consensus 14 ~~vl~~~i 21 (97)
T COG1862 14 PLVLIFAI 21 (97)
T ss_pred HHHHHHHH
Confidence 33333333
No 405
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=22.81 E-value=72 Score=21.74 Aligned_cols=13 Identities=15% Similarity=0.495 Sum_probs=5.9
Q ss_pred HHHHHHhhhhhHh
Q psy17711 314 MFLVLFGLGYYFS 326 (335)
Q Consensus 314 ~~~~~~~~~~~~~ 326 (335)
+++++|++-|+|.
T Consensus 8 ~~vv~~~i~yf~~ 20 (84)
T TIGR00739 8 PLVLIFLIFYFLI 20 (84)
T ss_pred HHHHHHHHHHHhe
Confidence 3444444445443
No 406
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=22.74 E-value=90 Score=20.06 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy17711 305 MMILMTLLTM 314 (335)
Q Consensus 305 ~~~~~~~~~~ 314 (335)
.+++.|++.|
T Consensus 54 vLv~ip~~l~ 63 (64)
T PF09472_consen 54 VLVGIPILLM 63 (64)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 407
>PF15378 DUF4605: Domain of unknown function (DUF4605)
Probab=22.57 E-value=1.1e+02 Score=19.31 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy17711 300 IVMVSMMILMTLLTMFLVLFGLG 322 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~ 322 (335)
+|==.|++++.++.+|+-++|++
T Consensus 24 ~VEPv~~~~~~~lL~flG~~gll 46 (60)
T PF15378_consen 24 VVEPVMSIFFLVLLWFLGIRGLL 46 (60)
T ss_pred eechHHHHHHHHHHHHHhHHHHH
Confidence 44445666666777777666665
No 408
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=22.29 E-value=1.8e+02 Score=19.32 Aligned_cols=6 Identities=67% Similarity=1.198 Sum_probs=2.7
Q ss_pred hhHhhh
Q psy17711 323 YYFSYL 328 (335)
Q Consensus 323 ~~~~~~ 328 (335)
|-|.||
T Consensus 66 Ya~fyl 71 (79)
T PF15168_consen 66 YAFFYL 71 (79)
T ss_pred HHHHHH
Confidence 444444
No 409
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=22.26 E-value=2.7e+02 Score=21.41 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhHhhhh
Q psy17711 314 MFLVLFGLGYYFSYLK 329 (335)
Q Consensus 314 ~~~~~~~~~~~~~~~~ 329 (335)
..+.||.+|||-+++.
T Consensus 105 ~~~~L~~~G~~~~~~s 120 (149)
T cd02431 105 AVLAILIFNFYISVAS 120 (149)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4566778888877653
No 410
>KOG4142|consensus
Probab=22.18 E-value=1.4e+02 Score=23.12 Aligned_cols=43 Identities=26% Similarity=0.495 Sum_probs=31.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHh---hhhhHhhhhhhh
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLFG---LGYYFSYLKTHF 332 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 332 (335)
.+.....++|...+|.-+|+-|-.||-.-|. ||=||..|+..-
T Consensus 92 ~~~p~~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eR 137 (208)
T KOG4142|consen 92 LDTPAAYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEER 137 (208)
T ss_pred ccChHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhh
Confidence 3444567889888888889888888855443 778999888653
No 411
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=22.14 E-value=1.4e+02 Score=21.12 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=22.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17711 290 ARSVTFMTLGIVMVSMMILMTLLTMFLVLF 319 (335)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (335)
.+..|.+.||..+.=-+.+..|+..|+.+|
T Consensus 69 ~~l~~~~~ig~Al~EalaI~~lvia~lllf 98 (100)
T PRK07159 69 KQVFKLLFIGSAISETSSIYALLVAFILIF 98 (100)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455688888877777677777777777776
No 412
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=22.06 E-value=2e+02 Score=18.41 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy17711 299 GIVMVSMMI 307 (335)
Q Consensus 299 ~~~~~~~~~ 307 (335)
||-++|++.
T Consensus 17 Gisllgv~a 25 (64)
T TIGR02975 17 GISLLGVLA 25 (64)
T ss_pred hHHHHHHHH
Confidence 344444433
No 413
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=21.73 E-value=2.8e+02 Score=23.39 Aligned_cols=54 Identities=11% Similarity=0.017 Sum_probs=37.4
Q ss_pred EEEeeCCCCC-CCchhHHHHHHhcCCCceEEEEeCCCCccccccChHHHHHHHHHHhhhch
Q psy17711 182 TVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 182 Lii~G~~D~~-~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~I~~fl~~~~ 241 (335)
++|-|..|.. .....+++.+.... ++.++.++|-++. .|++..+...+.+.++.
T Consensus 2 ~~iGG~~~~~~~~~i~~~~~~lag~-~~~rI~~iptAS~-----~~~~~~~~~~~~~~~lG 56 (250)
T TIGR02069 2 VIIGGAEDKVGDREILREFVSRAGG-EDAIIVIITSASE-----EPREVGERYITIFSRLG 56 (250)
T ss_pred eEEeCccccCChHHHHHHHHHHhCC-CCceEEEEeCCCC-----ChHHHHHHHHHHHHHcC
Confidence 5677777876 55677777777766 5678999998764 46666666666665543
No 414
>KOG1688|consensus
Probab=21.63 E-value=64 Score=25.24 Aligned_cols=12 Identities=58% Similarity=0.808 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhh
Q psy17711 311 LLTMFLVLFGLG 322 (335)
Q Consensus 311 ~~~~~~~~~~~~ 322 (335)
|+|||+|||.+-
T Consensus 148 Ll~Y~i~lf~lt 159 (188)
T KOG1688|consen 148 LLMYFIVLFFLT 159 (188)
T ss_pred HHHHHHHHHHHH
Confidence 788999998875
No 415
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=21.38 E-value=1.6e+02 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.579 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17711 294 TFMTLGIVMVSMMILMTLLTMFLVLFGLGY 323 (335)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (335)
-|-..|+.++++-+++ |++.|.-+++-||
T Consensus 14 rFr~~g~~Ai~~~l~f-L~~ll~sI~~~G~ 42 (155)
T PF11812_consen 14 RFRAYGLAAIAIALAF-LVILLFSIVSKGY 42 (155)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcch
Confidence 5777787776665443 4555555666665
No 416
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=21.19 E-value=1.1e+02 Score=22.44 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHH
Q psy17711 19 QLVTSIEEWRKELKLQEMILLGHSFGGYLA 48 (335)
Q Consensus 19 ~~~~dl~~ll~~lg~~~~~lvGhS~Gg~ia 48 (335)
+....+.-.+..++.+.++++||+--|++.
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~v~ 73 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGAVK 73 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcHHH
Confidence 456677777889999999999997555444
No 417
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=21.18 E-value=56 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy17711 304 SMMILMTLLTMFLVLFG 320 (335)
Q Consensus 304 ~~~~~~~~~~~~~~~~~ 320 (335)
|+.=++-++...|+|||
T Consensus 5 g~~elliIlvIvlllFG 21 (92)
T PRK00442 5 DWKHWIVILVVVVLVFG 21 (92)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 34344445566788888
No 418
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=21.17 E-value=1.5e+02 Score=19.92 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17711 291 RSVTFMTLGIVMVSMMILMTLLTMFLVLFGL 321 (335)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (335)
+..+-+.++.+++--+.+..|++-|+.+|..
T Consensus 48 ~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 48 KLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3557788888888888888899888888753
No 419
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.13 E-value=1.9e+02 Score=21.59 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17711 300 IVMVSMMILMTLLTMFLVLF 319 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (335)
+-+..++-++||+++++.++
T Consensus 68 ~~aa~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAV 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556677776665544
No 420
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=21.04 E-value=2.6e+02 Score=21.42 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=39.3
Q ss_pred EEEEeeCCCCCCCchhHHHHHHhcCCCceEEEEeCCCCcccc--------ccChHHHHHHHHHHhhhch
Q psy17711 181 VTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVY--------ADRADVFNKMVNDTCTLSD 241 (335)
Q Consensus 181 vLii~G~~D~~~~~~~~~l~~~~~~~~~~~~~~i~~~gH~~~--------~e~p~~~~~~I~~fl~~~~ 241 (335)
-.++|++.| +....+.+...+|...+++..+..--||+.. ++++.+..+.+..+++.+.
T Consensus 13 rv~iHaTED--~~kV~eAL~~~~p~~~~~e~ev~~aeGhyGNpI~il~~~l~~~~~~~~flk~i~e~l~ 79 (149)
T COG1325 13 RVIIHATED--EEKVLEALENFFPEAIDVEIEVTEAEGHYGNPITILEVRLERSREARKFLKKLRELLG 79 (149)
T ss_pred EEEEEccCC--HHHHHHHHHHhcCcccccceEEEEeecccCCeEEEEEEEecCcHHHHHHHHHHHHhcC
Confidence 368899999 4567777888888733345666665688863 4676666666666666554
No 421
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=21.00 E-value=3.3e+02 Score=22.54 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=36.5
Q ss_pred CCCChhccHHHHHHHHHHHHHH---hC------CCcEEEEEechhHHH----HHHHHHhCCchhceeeEecCCC
Q psy17711 9 FSTDPETVERQLVTSIEEWRKE---LK------LQEMILLGHSFGGYL----AFAYAIQYPDRVKHLILADPWG 69 (335)
Q Consensus 9 ~~~~~~~~~~~~~~dl~~ll~~---lg------~~~~~lvGhS~Gg~i----a~~~a~~~P~~v~~lvli~~~~ 69 (335)
.|....|-.+.+.++..++-+. +| .+++.++||.||-.- +.++...+ .|+.+|-+++.+
T Consensus 22 DPlRAK~iAetfLe~~~~vnevR~mlgfTGtYKGk~iSvmg~GmGipS~sIY~~ELi~~y--~Vk~iIRvGt~G 93 (236)
T COG0813 22 DPLRAKYIAETFLENAVCVNEVRGMLGFTGTYKGKKISVMGHGMGIPSISIYSRELITDY--GVKKIIRVGTCG 93 (236)
T ss_pred CCchHHHHHHHHHhhhhhhhhhcchhcccceecCcEEEEEEecCCCccHHHHHHHHHHHh--CcceEEEEEccc
Confidence 3334444445566665555432 22 258999999999544 44444455 589999988754
No 422
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=20.69 E-value=26 Score=28.16 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHh
Q psy17711 301 VMVSMMILMTLLTMFLVLFGLGYYFS 326 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (335)
....++|.||++..+++++.+|+++-
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~ 181 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFW 181 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhhee
Confidence 44556788898888877777776653
No 423
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=20.54 E-value=2e+02 Score=19.21 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=19.1
Q ss_pred hhccHHHHHHHHHHHHHHhCCC
Q psy17711 13 PETVERQLVTSIEEWRKELKLQ 34 (335)
Q Consensus 13 ~~~~~~~~~~dl~~ll~~lg~~ 34 (335)
..++.+++.+++..++.++|+.
T Consensus 58 IhWTsq~Lid~~q~fLqhlgis 79 (89)
T PF07380_consen 58 IHWTSQDLIDATQNFLQHLGIS 79 (89)
T ss_pred hccchHHHHHHHHHHHHHcCCC
Confidence 4567889999999999999984
No 424
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=20.48 E-value=1.5e+02 Score=21.90 Aligned_cols=14 Identities=14% Similarity=0.622 Sum_probs=6.8
Q ss_pred HHHHhhhhhHhhhh
Q psy17711 316 LVLFGLGYYFSYLK 329 (335)
Q Consensus 316 ~~~~~~~~~~~~~~ 329 (335)
+.+..+||++.+-|
T Consensus 102 i~~l~vg~~Y~~kk 115 (123)
T COG0838 102 IFVLLVGFVYAWKK 115 (123)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344555555544
No 425
>PRK14401 membrane protein; Provisional
Probab=20.39 E-value=2.3e+02 Score=22.66 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=17.2
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q psy17711 297 TLG-IVMVSMMILMTLLTMFLVLFGLGYYFSYLKTH 331 (335)
Q Consensus 297 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
++| +.++.....+..+..|+++.++ |.+-|-+.|
T Consensus 103 slGvll~l~p~~~li~~~ifl~v~~~-~~~~~~~~~ 137 (187)
T PRK14401 103 TLGFFLVLAPGTTLGTVAFGLAVAGL-YRALLWRQR 137 (187)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHcccc
Confidence 344 3344433333444556777665 555555555
No 426
>PF05102 Holin_BlyA: holin, BlyA family; InterPro: IPR006493 This family is represented by BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage []. This protein was previously proposed to be a haemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C terminus.
Probab=20.06 E-value=1.5e+02 Score=18.79 Aligned_cols=22 Identities=9% Similarity=0.412 Sum_probs=11.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHH
Q psy17711 293 VTFMTLGIVMVSMMILMTLLTM 314 (335)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~ 314 (335)
.|.+-++.+.+++.|++.++.|
T Consensus 11 ~~l~~iklI~~~ifI~v~IL~~ 32 (61)
T PF05102_consen 11 SNLNNIKLIILMIFITVLILPL 32 (61)
T ss_pred HhcccchhhHHHHHHHHHHHHH
Confidence 3455566555555554444433
No 427
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=20.04 E-value=2.3e+02 Score=17.44 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhhHhhhhhh
Q psy17711 311 LLTMFLVLFGLGYYFSYLKTH 331 (335)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~ 331 (335)
+++.|+-|+-|.++|.+-+..
T Consensus 26 ~l~i~~GL~iLa~ef~wArr~ 46 (53)
T PF09656_consen 26 LLVIFLGLAILATEFPWARRL 46 (53)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 567777777778888776543
No 428
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=20.02 E-value=1.3e+02 Score=30.03 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.9
Q ss_pred CCCcEEEEEechhHHHHHHHHH
Q psy17711 32 KLQEMILLGHSFGGYLAFAYAI 53 (335)
Q Consensus 32 g~~~~~lvGhS~Gg~ia~~~a~ 53 (335)
++.--++.|.|+||+++..+|+
T Consensus 64 ~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 64 RVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred CCCCceEEeeCHHHHHHHHHHc
Confidence 5566679999999999999997
No 429
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=20.02 E-value=2.7e+02 Score=22.86 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy17711 308 LMTLLTMFLVLF 319 (335)
Q Consensus 308 ~~~~~~~~~~~~ 319 (335)
++.++-..|..+
T Consensus 71 lial~N~~l~~i 82 (210)
T PF07662_consen 71 LIALLNGVLGWI 82 (210)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
Done!