RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17711
(335 letters)
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 94.8 bits (236), Expect = 2e-22
Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 30/245 (12%)
Query: 1 FGRSSRPRF-STDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
G S+ D T + V L ++ +LG S+GG L A++ P +
Sbjct: 93 CGNSTHLPDAPADFWTPQL-FVDEFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGL 151
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYK-----NFNPLWPVRFVGPLGQWVV 114
L + + + + + L A L + ++ + V
Sbjct: 152 VSLAICNSPASMRLWSEAAGDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHV 211
Query: 115 EKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQ 174
++ P P+ F + + + T Y +G + FH + ++ L V
Sbjct: 212 CRVVPT-PQDFADSVAQMEAEPTVYH------TMNGPNEFHVVGTLGDWSVIDRLPDV-- 262
Query: 175 LAAHVPVTVIYGSRSWVDNSSG----DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFN 230
PV VI G + D I + R G H + ++ + F
Sbjct: 263 ---TAPVLVIAGEHDEATPKTWQPFVDHIPDVR----SHVFP---GTSHCTHLEKPEEFR 312
Query: 231 KMVND 235
+V
Sbjct: 313 AVVAQ 317
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 92.9 bits (231), Expect = 4e-22
Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 35/237 (14%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S ST +E IE + + + IL GHS+GGYLA A A D+
Sbjct: 60 MGNSDPISPSTSDNVLETL----IEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTL 115
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+ L P + + + + L + + +
Sbjct: 116 GVFLTCPVITA------------------------DHSKRLTGKHINILEEDINPVENKE 151
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGL-GYAKRPMLHRVDQLAAHV 179
F + ++ P + T + L ++ +
Sbjct: 152 YFADFLSMNVIINNQAWHDYQNL--IIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQF 209
Query: 180 PVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
P ++ G V K+ V + GH++ D+ + +
Sbjct: 210 PFKIMVGRNDQVVGYQEQLKLINHNENGEIVLLN---RTGHNLMIDQREAVGFHFDL 263
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 92.0 bits (229), Expect = 9e-22
Identities = 38/243 (15%), Positives = 79/243 (32%), Gaps = 34/243 (13%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S + + ++ + +E R+ L + + GHS GG LA YA + + +
Sbjct: 60 CGNSDSAK-NDSEYSMTE-TIKDLEAIREALYINKWGFAGHSAGGMLALVYATEAQESLT 117
Query: 61 HLILADPWGFPQKSIDPQ--KASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+I+ + + SK + R++ + + V++ R
Sbjct: 118 KIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDS------------TVQEER 165
Query: 119 PDLPKKFTPVLKEDSSAITEYI-FQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA 177
L +++ + + E + + + + E Y R L V
Sbjct: 166 KALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFV----- 220
Query: 178 HVPVTVIYGSRSWVDNSSG-----DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232
+P + G + I A + + H+ + + D FN+
Sbjct: 221 KIPSFIYCGKHDVQCPYIFSCEIANLIPNAT-------LTKFEESNHNPFVEEIDKFNQF 273
Query: 233 VND 235
VND
Sbjct: 274 VND 276
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 90.1 bits (224), Expect = 5e-21
Identities = 44/238 (18%), Positives = 76/238 (31%), Gaps = 33/238 (13%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
F +S E +++ L + L+G++ GG A +A++YPDR+
Sbjct: 74 FNKSDAVV---MDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIG 130
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
LIL P G P I L ++ E ++
Sbjct: 131 KLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEP-------------------SYETLKQM 171
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAF-HTLTEGLGYAKRPMLHRVDQLAA-H 178
L D S ITE + Q +A + A +L
Sbjct: 172 LQVFLY-----DQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIK 226
Query: 179 VPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
+ +G +V G K+ ++ ++ + G + AD FN++V D
Sbjct: 227 AKTFITWGRDDRFVPLDHGLKLLWNI-DDA--RLHVFSKCGAWAQWEHADEFNRLVID 281
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 87.8 bits (218), Expect = 4e-20
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 43/241 (17%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
FG + RP + + V I L++++ ++G++FGG LA A A++Y +RV
Sbjct: 65 FGFTDRPE---NYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVD 121
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
++L G + A +W + P E MR
Sbjct: 122 RMVLMGAAGTRFDVTEGLNA----VWG---------YTPSI-------------ENMR-- 153
Query: 121 LPKKFTPVLKEDSSAIT----EYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLA 176
+ D S +T ++ ++Q ES E + + +
Sbjct: 154 ---NLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIK 210
Query: 177 A-HVPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVN 234
+I+G V SS ++ E + Q+ GH ++ D FN++V
Sbjct: 211 TLPNETLIIHGREDQVVPLSSSLRLGELIDR---AQLHVFGRCGHWTQIEQTDRFNRLVV 267
Query: 235 D 235
+
Sbjct: 268 E 268
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 87.7 bits (217), Expect = 5e-20
Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 32/236 (13%)
Query: 1 FGRSSRP-RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
G S + + V +I + K Q +L HS GG+ A Q
Sbjct: 80 SGYSPVSNQANVGLRD----WVNAILMIFEHFKFQSYLLCVHSIGGFAALQIMNQSSKAC 135
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
I +P + + A +LY L + ++
Sbjct: 136 LGFIGLEP------------TTVMIYRAGFSSDLYPQL----------ALRRQKLKTAAD 173
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHV 179
L SS + +++ + +L + ++ +
Sbjct: 174 RLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISEKI 233
Query: 180 PVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
P V S + E ++++ ++ G H+++ + + V
Sbjct: 234 PSIVFSESFREKEY----LESEYLNKHTQTKLILC-GQHHYLHWSETNSILEKVEQ 284
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 84.3 bits (209), Expect = 5e-19
Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 30/237 (12%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G + + + T ++ + K + + L G+S GG +A YAI +
Sbjct: 53 HGEDQSSM--DETWNFD-YITTLLDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPIS 109
Query: 61 HLILAD-PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
+LIL G +++ ++ A+ + V
Sbjct: 110 NLILESTSPGIKEEANQLERRLVDDARAK---------------VLDIAGIELFVNDW-- 152
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA-H 178
E I I Q + S L G + P L +L
Sbjct: 153 -EKLPLFQSQLELPVEIQHQIRQ-QRLSQSPHKMAKAL-RDYGTGQMPNL--WPRLKEIK 207
Query: 179 VPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
VP ++ G K+ + + GH ++ + +D F+ M+
Sbjct: 208 VPTLILAGEYDEKFVQIAKKMANLIPNSKCKLIS---ATGHTIHVEDSDEFDTMILG 261
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 84.4 bits (209), Expect = 6e-19
Identities = 43/236 (18%), Positives = 75/236 (31%), Gaps = 28/236 (11%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
GRS TV+ LV + L ++ LL H FG +A ++P
Sbjct: 63 SGRSLELPQDPRLFTVDA-LVEDTLLLAEALGVERFGLLAHGFGAVVALEVLRRFPQAEG 121
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
++LA FP + +A+ + NL + P L M P
Sbjct: 122 AILLAPWVNFPWLAARLAEAAGLAPLPDPEENLKEALKREEPKALFDRL-------MFPT 174
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVP 180
+ + + I P L P
Sbjct: 175 PRGRMAYEWLAEGAGIL---------GSDAPGLAFLRNGLWRLDYTPYLTPE-----RRP 220
Query: 181 VTVIYGSRSWVDNSSGDKIKEARSQ-NSFVQVKSVTGAGHHVYADRADVFNKMVND 235
+ V+ G R D +S +E S+ + ++V + AGH+++ D + F + +
Sbjct: 221 LYVLVGER---DGTSYPYAEEVASRLRAPIRV--LPEAGHYLWIDAPEAFEEAFKE 271
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 84.3 bits (209), Expect = 7e-19
Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 35/240 (14%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+G S + + R +++ +L L + L+G++ GG A +A+ YP R
Sbjct: 76 YGHSDKRA---EHGQFNRYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAG 132
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
L+L P G L N P V L ++ V R +
Sbjct: 133 RLVLMGPGG-----------------------LSINLFAPDPTEGVKRLSKFSVAPTREN 169
Query: 121 LPKKFTPVLKEDSSAITEYIFQC---NVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA 177
L + F V+ D + IT + P +A + + A ++
Sbjct: 170 L-EAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYR 228
Query: 178 -HVPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
PV +I+G + + Q+ GH V ++ D FNK+ +
Sbjct: 229 LRQPVLLIWGREDRVNPLDGALVALKTIPR---AQLHVFGQCGHWVQVEKFDEFNKLTIE 285
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 84.3 bits (209), Expect = 8e-19
Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 33/238 (13%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+G+S + + ++ +L + ++ LLG+S GG+ + A+ +++P+RV
Sbjct: 77 WGKSDSV---VNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVG 133
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
L+L P P + L Q + +
Sbjct: 134 KLVLMGGGTGGMSLFTP-----------------------MPTEGIKRLNQLYRQPTIEN 170
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSG-ESAFHTLTEGLGYAKRPMLHRVDQLAA-H 178
L K + D+S +T+ +F+ + + L + +LA
Sbjct: 171 L-KLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIK 229
Query: 179 VPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
+++G +V +G ++ + ++ GH + AD FN++V +
Sbjct: 230 AQTLIVWGRNDRFVPMDAGLRLLSGIAG---SELHIFRDCGHWAQWEHADAFNQLVLN 284
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 84.0 bits (208), Expect = 1e-18
Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 29/235 (12%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S +P + + I L IL+GHS G + A +YPD V+
Sbjct: 105 HGLSDKPETGYEANDYADDIAGLIRT----LARGHAILVGHSLGARNSVTAAAKYPDLVR 160
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
++ D + + L AR+ F + V +
Sbjct: 161 SVVAIDFTPYIETEALD------ALEARVNA---------GSQLF--EDIKAVEAYLAGR 203
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVP 180
P ++ + + + + ++ + +A GL P V P
Sbjct: 204 YPNIPADAIRIRAESGYQPV-DGGLRPLASSAAMAQTARGLRSDLVPAYRDVT-----KP 257
Query: 181 VTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
V ++ G S + S + + + V V GA H+V ++ K + +
Sbjct: 258 VLIVRGESSKL--VSAAALAKTSRLRPDLPVVVVPGADHYVNEVSPEITLKAITN 310
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 84.8 bits (209), Expect = 2e-18
Identities = 44/302 (14%), Positives = 88/302 (29%), Gaps = 38/302 (12%)
Query: 1 FGRSSRP---RFSTDPETVE--RQLVTSIEEWRKELKLQE--MILLGHSFGGYLAFAYAI 53
G S+ R T+ ++ R ++ + +++GHS GG+ A A +
Sbjct: 97 HGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDV 156
Query: 54 QYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWV 113
P+ LIL +P +K+I + P ++ NLY + F
Sbjct: 157 LQPNLFHLLILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHF--ANESEY 214
Query: 114 VEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGES-------AFHTLTEGLGYAK- 165
V+ MR + S + I +A + L Y
Sbjct: 215 VKYMR-----NGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKMEQAQNLLCYMNM 269
Query: 166 RPMLHRVDQLAAH--VPVTVIYGSRS-WVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVY 222
+ + I G+RS W + +++ + G H V
Sbjct: 270 QTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQNYHLDVIP---GGSHLVN 326
Query: 223 ADRADVFNKMVNDTCTLSDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEED 282
+ D+ + + + + P + + EE + ++
Sbjct: 327 VEAPDLVIERI----------NHHIHEFVLTSPLQSSHIPQLTLEERAVMFDRAFDSFKN 376
Query: 283 GQ 284
Sbjct: 377 EA 378
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 82.0 bits (203), Expect = 4e-18
Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 29/238 (12%)
Query: 1 FGRSSRPR-FSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
FG+S P + + V I +++ ++G+S GG + ++ P+R
Sbjct: 69 FGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERF 128
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
+ L G P + P P AR++ + + +V
Sbjct: 129 DKVALMGSVGAP-MNARP------PELARLLAFYA----DPRLTPYRELIHSFV------ 171
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA-H 178
+ P I + F+ P + E + ++ L
Sbjct: 172 -----YDPENFPGMEEIVKSRFE-VANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLP 225
Query: 179 VPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
V V +G + V + + + ++ + GH +R D M+ +
Sbjct: 226 HDVLVFHGRQDRIVPLDTSLYLTKHLKH---AELVVLDRCGHWAQLERWDAMGPMLME 280
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 80.1 bits (198), Expect = 2e-17
Identities = 28/241 (11%), Positives = 66/241 (27%), Gaps = 45/241 (18%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQE-MILLGHSFGGYLAFAYAIQYPDRV 59
FG++++P + + + ++ K + + ++G+S GG ++ + + V
Sbjct: 76 FGKTAKPDIEYTQDR----RIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELV 131
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
L+L G + + + P+ R E M
Sbjct: 132 NALVLMGSAGLVVEIHEDLR----PIINY------------DFTR----------EGMVH 165
Query: 120 DLPKKFTPVLKEDSSAITEYIFQC---NVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLA 176
+ D I + + + A+ + + + +
Sbjct: 166 LVKALTN-----DGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDP-EFIR 219
Query: 177 A-HVPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVN 234
VP V+ G V + K + + GH + + F
Sbjct: 220 KVQVPTLVVQGKDDKVVPVETAYKFLDLIDD---SWGYIIPHCGHWAMIEHPEDFANATL 276
Query: 235 D 235
Sbjct: 277 S 277
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 77.0 bits (190), Expect = 3e-16
Identities = 35/237 (14%), Positives = 72/237 (30%), Gaps = 40/237 (16%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
S P + + + L +++ ++G S GG + ++ P+RVK
Sbjct: 104 DKNKSIP---ENVSGTRTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLRMPERVK 160
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+ P + + YK L V W++
Sbjct: 161 SAAILSPAE---------------TFLPFHHDFYKYALGLTASNGVETFLNWMMND---- 201
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA-HV 179
P+ + F+ V G + +G Y ++L + V
Sbjct: 202 -QNVLHPIFVKQ--------FKAGVMWQDGSRNPNPNADGFPYVFTD-----EELRSARV 247
Query: 180 PVTVIYGSRSWV-DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
P+ ++ G + D S + + +V + AGH + ++ N+ V
Sbjct: 248 PILLLLGEHEVIYDPHSALHRASSFVPDIEAEV--IKNAGHVLSMEQPTYVNERVMR 302
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 75.9 bits (187), Expect = 4e-16
Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 45/239 (18%)
Query: 1 FGRSSR-PRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
G S R P + + + + L++ + +GHS GG A PDR+
Sbjct: 53 HGLSPREPVMNYP------AMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRI 106
Query: 60 KHLILAD--PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
L+ D P + + D A+ + + + + Q++++
Sbjct: 107 DKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSF 166
Query: 118 RPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA 177
+ PVL + I + + D
Sbjct: 167 VDGEWRFNVPVLWDQYPHIVGW---------------------------EKIPAWD---- 195
Query: 178 HVPVTVIYGSRS-WVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
P I G S +V D + Q + + GAGH V+A++ D + +
Sbjct: 196 -HPALFIPGGNSPYVSEQYRDDLLAQFPQ---ARAHVIAGAGHWVHAEKPDAVLRAIRR 250
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 75.4 bits (186), Expect = 5e-16
Identities = 33/238 (13%), Positives = 71/238 (29%), Gaps = 49/238 (20%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S ST ++ + I + + L+G+S GG + A++ V+
Sbjct: 52 HGESKGQCPSTVYGYID-NVANFITNSEVTKHQKNITLIGYSMGGAIVLGVALKKLPNVR 110
Query: 61 HLILADPWGFPQKSIDPQKASKI-PLWARMIGNLYKN-FNPLWPVRFVGPLGQWVVEKMR 118
++ ++ L + +Y N + + + +G + + EK
Sbjct: 111 KVVSLSG------------GARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYF 158
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
+ +K ++ D A L +D
Sbjct: 159 -ETLEKDPDIMINDLIACKLIDL------------------------VDNLKNID----- 188
Query: 179 VPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
+PV I + IK+ +NS ++K H + A + + +
Sbjct: 189 IPVKAIVAKDELLTLVEYSEIIKKE-VENS--ELKIFETGKHFLLVVNAKGVAEEIKN 243
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 76.0 bits (187), Expect = 9e-16
Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 29/237 (12%)
Query: 1 FGRSS-RPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
G S+ R + P+ ++ +EL ++G S GG A A PD V
Sbjct: 116 HGHSAWREDGNYSPQ----LNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLV 171
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
L+L D + P F P Q +++
Sbjct: 172 GELVLVD--------VTPSALQ--RHAELTAEQRGTVALMHGEREF--PSFQAMLDLTIA 219
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHV 179
P D ++ +F + + +G + + VD L+
Sbjct: 220 AAP-------HRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALS--A 270
Query: 180 PVTVIYGSRSW-VDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
P+T++ G S V + ++ + V + V +GH V +D+ ++V
Sbjct: 271 PITLVRGGSSGFVTDQDTAELHRRATHFRGVHI--VEKSGHSVQSDQPRALIEIVRG 325
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 74.6 bits (184), Expect = 1e-15
Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 47/236 (19%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+G S P + ER + K LK +++ LLG S GG A A +YP +
Sbjct: 62 YGHSRPPDRDFPADFFER-DAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIH 120
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+++ + + + +W E+ R
Sbjct: 121 KMVIWGANAYVTDE------------------------DSMIYEGIRDVSKW-SERTRKP 155
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVP 180
L + +Y + + G F L +G R +L RV P
Sbjct: 156 LEALYGY----------DYFARTCEKWVDGIRQFKHLPDGNIC--RHLLPRV-----QCP 198
Query: 181 VTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
+++G + V D I + + S ++ + H+++ AD FNK+ D
Sbjct: 199 ALIVHGEKDPLVPRFHADFIHKHV-KGS--RLHLMPEGKHNLHLRFADEFNKLAED 251
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 75.3 bits (186), Expect = 1e-15
Identities = 45/263 (17%), Positives = 85/263 (32%), Gaps = 69/263 (26%)
Query: 1 FGRSSRPRFSTDPE--TVERQLVTSIEEWRKELKLQE-MILLGHSFGGYLAFAYAIQYPD 57
GRS P D T++ V E R +L E + L+G S+GG LA AYA++Y D
Sbjct: 66 CGRSEEP----DQSKFTIDY-GVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQD 120
Query: 58 RVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
+K LI++ +PL + R + L
Sbjct: 121 HLKGLIVSGGLSS------------VPLTVK------------EMNRLIDELPAKYR--- 153
Query: 118 RPDLPKKFTPVLKEDSSAITEYIFQCN-----------------VQAPSGESAFHTLTEG 160
D KK+ ++ E + ++ + + +
Sbjct: 154 --DAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGP 211
Query: 161 LGYAKRPMLH---RVDQLAA-HVPVTVIYGSRSWVDNSSG----DKIKEARSQNSFVQVK 212
+ + D+++A +P + G V + +KI + +
Sbjct: 212 NEFTITGTIKDWDITDKISAIKIPTLITVGEYDEVTPNVARVIHEKIAGSE----LHVFR 267
Query: 213 SVTGAGHHVYADRADVFNKMVND 235
H + + +NK+++D
Sbjct: 268 ---DCSHLTMWEDREGYNKLLSD 287
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 75.2 bits (185), Expect = 2e-15
Identities = 36/250 (14%), Positives = 84/250 (33%), Gaps = 39/250 (15%)
Query: 1 FGRSSRP-RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
F +SS+P + + L + + L + ++GHS GG LA YA+ YP +V
Sbjct: 84 FCKSSKPAHYQYSFQQ----LAANTHALLERLGVARASVIGHSMGGMLATRYALLYPRQV 139
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
+ L+L +P G KA +P + W R + + + + +
Sbjct: 140 ERLVLVNPIGLE-----DWKALGVPWRSV----------DDWYRRDLQTSAEGIRQYQQA 184
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHV 179
+ + + + A+++ +P+++ +D+L +
Sbjct: 185 TY---YAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRL--QM 239
Query: 180 PVTVIYGSR-SWVDNSSGDKIKEARSQNSFV-------------QVKSVTGAGHHVYADR 225
P ++ G + + + ++ + GH
Sbjct: 240 PTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQIQA 299
Query: 226 ADVFNKMVND 235
+ F++ + +
Sbjct: 300 PERFHQALLE 309
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 72.4 bits (178), Expect = 1e-14
Identities = 32/244 (13%), Positives = 71/244 (29%), Gaps = 48/244 (19%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G + + T + +V + L + ++G S G ++A + P+ V
Sbjct: 82 IGATENA----EGFTTQ-TMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVS 136
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+L G ++ + + + + R
Sbjct: 137 SAVLMATRGRLDRARQF--------FNKA-----------EAELYDSGVQLPPTYDARAR 177
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYA-KRPMLHRVDQLAAHV 179
L + F+ D A+ ++I ++ + + P +
Sbjct: 178 LLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIA-----A 232
Query: 180 PVTVIYGSRSWVDNSSG--------DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
PV VI + D + D + R ++Q+ AGH + +R + N
Sbjct: 233 PVLVIGFAD---DVVTPPYLGREVADALPNGR----YLQIP---DAGHLGFFERPEAVNT 282
Query: 232 MVND 235
+
Sbjct: 283 AMLK 286
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 71.2 bits (175), Expect = 2e-14
Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 37/239 (15%)
Query: 1 FGRSSRPRFSTDPE--TVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
G S + DP Q + +E + ++ + +G S GG L A P R
Sbjct: 66 RGDSDYAK---DPMTYQPM-QYLQDLEALLAQEGIERFVAIGTSLGGLLTMLLAAANPAR 121
Query: 59 VKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+ +L D + P+ +I + F ++
Sbjct: 122 IAAAVLNDVGPE----VSPEGLERIRGYVG------------QGRNF--ETWMHAARALQ 163
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFH-------TLTEGLGYAKRPMLHR 171
+ + I V SG AF +G + +
Sbjct: 164 ESSGDVYPDWDITQWLRYAKRIM---VLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMWP 220
Query: 172 VDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFN 230
+ A P+ V+ G S + ++ +R V++ ++ GH D +
Sbjct: 221 LFDALATRPLLVLRGETSDILSAQTAAKMASRPG---VELVTLPRIGHAPTLDEPESIA 276
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 70.6 bits (173), Expect = 4e-14
Identities = 33/237 (13%), Positives = 59/237 (24%), Gaps = 35/237 (14%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
G S + V E +L ++ + + HS GG++ Q P+R
Sbjct: 64 HGLSPSEVPDFGYQE----QVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERA 119
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
I+ D + P A + L W G W+
Sbjct: 120 PRGIIMDWLM---WAPKPDFAKSLTLLKDP---------ERWREGTHGLFDVWLDGHDEK 167
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHV 179
+ + + SG E + + L
Sbjct: 168 RVRHHLLEEMADYGYD---------CWGRSGRVI-----EDAYGRNGSPMQMMANLTKTR 213
Query: 180 PVTVIYGSRSWVDNSSGDKIKEA-RSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
P+ I+ +KI Q+ + + G H D D + +
Sbjct: 214 PIRHIFSQP---TEPEYEKINSDFAEQHPWFSYAKLGGPTHFPAIDVPDRAAVHIRE 267
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 70.5 bits (173), Expect = 4e-14
Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 30/237 (12%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
GRSS+P D +T L IE L L++ +L G S GG Y ++ RV
Sbjct: 57 HGRSSQPWSGNDMDTYADDLAQLIEH----LDLRDAVLFGFSTGGGEVARYIGRHGTARV 112
Query: 60 KHLILADPWG-FPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
L K+ + ++ + + + L+ GP + +
Sbjct: 113 AKAGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGF----NQ 168
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
P + S+ + ++ + + A ++A+ + L ++D
Sbjct: 169 PG---------AKSSAGMVDWFWLQGMAAGH-KNAYDCIKAFSETDFTEDLKKID----- 213
Query: 179 VPVTVIYGSRSWVDN--SSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMV 233
VP V++G V +SG ++ GA H + D N +
Sbjct: 214 VPTLVVHGDADQVVPIEASGIASAALVKGSTLKIYS---GAPHGLTDTHKDQLNADL 267
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 69.7 bits (171), Expect = 7e-14
Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 40/242 (16%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
FG+SS+P + +T L +E+ L+LQ + L+G S GG Y Y DR+
Sbjct: 65 FGKSSQPWEGYEYDTFTSDLHQLLEQ----LELQNVTLVGFSMGGGEVARYISTYGTDRI 120
Query: 60 KHLILAD--PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
+ ++ A P + P+ A + + + F +
Sbjct: 121 EKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDR-LAFLDEFTKG---FFAAGD 176
Query: 118 RPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA 177
R DL S + Y + A + +T R L + +
Sbjct: 177 RTDLV----------SESFRLYNWDIAAGASP-KGTLDCITAFSKTDFRKDLEKFN---- 221
Query: 178 HVPVTVIYGSRS---WVDNS---SGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
+P +I+G + S + + I ++ V + G H + A A FN+
Sbjct: 222 -IPTLIIHGDSDATVPFEYSGKLTHEAIPNSK-------VALIKGGPHGLNATHAKEFNE 273
Query: 232 MV 233
+
Sbjct: 274 AL 275
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 69.2 bits (170), Expect = 8e-14
Identities = 36/241 (14%), Positives = 69/241 (28%), Gaps = 45/241 (18%)
Query: 1 FGRSSRPRFSTDPETVER--QLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
FGRS ++ + V + + I LG S GG +A A+ +P+R
Sbjct: 50 FGRSRGF----GALSLADMAEAVL-------QQAPDKAIWLGWSLGGLVASQIALTHPER 98
Query: 59 VKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
V+ L+ D K + A L + RF+
Sbjct: 99 VRALVTVASSPCFSAR-DEWPGIKPDVLAGFQQQLSDDQQRTVE-RFLALQTM------- 149
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
T ++D+ A+ + + + + + + + R L V
Sbjct: 150 ------GTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDL--RQPLQNVS----- 196
Query: 179 VPVTVIYGSRSWVDN----SSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVN 234
+P +YG D + + + A H + F ++
Sbjct: 197 MPFLRLYGYL---DGLVPRKVVPMLDKLWPHSESYIFA---KAAHAPFISHPAEFCHLLV 250
Query: 235 D 235
Sbjct: 251 A 251
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 69.6 bits (171), Expect = 9e-14
Identities = 50/241 (20%), Positives = 84/241 (34%), Gaps = 40/241 (16%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
FGRS +P D +T + IE L L+E+ L+G S GG Y ++ RV
Sbjct: 57 FGRSDQPWTGNDYDTFADDIAQLIEH----LDLKEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 60 KHLILADPW-GFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
L+L + D + + ++AR L K+ + F P
Sbjct: 113 AGLVLLGAVTPLFGQKPDYPQGVPLDVFARFKTELLKDR-AQFISDFNAPFY-------- 163
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
+ S + Q + A S ++ +T RP + ++D
Sbjct: 164 ------GINKGQVVSQGVQTQTLQIALLA-SLKATVDCVTAFAETDFRPDMAKID----- 211
Query: 179 VPVTVIYGSRSWV---DNS---SGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232
VP VI+G + + + + + IK A +K A H A N+
Sbjct: 212 VPTLVIHGDGDQIVPFETTGKVAAELIKGAE-------LKVYKDAPHGFAVTHAQQLNED 264
Query: 233 V 233
+
Sbjct: 265 L 265
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 68.8 bits (169), Expect = 2e-13
Identities = 34/248 (13%), Positives = 69/248 (27%), Gaps = 52/248 (20%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S + + + + + L L+E + +GHS G + +I+ P+
Sbjct: 57 SGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFS 116
Query: 61 HLILAD------------PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGP 108
HL++ GF ++ + L M N P
Sbjct: 117 HLVMVGPSPCYLNDPPEYYGGFEEEQLLG-------LLEMMEKNYIGWATVFAATVLNQP 169
Query: 109 LGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPM 168
+ E++ P F + R
Sbjct: 170 DRPEIKEELESRFCS----------------------TDPVIARQFAKAAFFSDH--RED 205
Query: 169 LHRVDQLAAHVPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRAD 227
L +V VP ++ + + G + + +S Q++ GH + D
Sbjct: 206 LSKVT-----VPSLILQCADDIIAPATVGKYMHQHLPYSSLKQME---ARGHCPHMSHPD 257
Query: 228 VFNKMVND 235
+++ D
Sbjct: 258 ETIQLIGD 265
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 68.5 bits (168), Expect = 2e-13
Identities = 40/244 (16%), Positives = 72/244 (29%), Gaps = 48/244 (19%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
FG+SS+P D +T L T +E L LQ+ +L+G S G Y Y R+
Sbjct: 61 FGQSSQPTTGYDYDTFAADLNTVLET----LDLQDAVLVGFSTGTGEVARYVSSYGTARI 116
Query: 60 KHLILAD--PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
+ + +P A+ + ++ + +
Sbjct: 117 AKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADR-----------------YAF 159
Query: 118 RPDLPKKF----TPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVD 173
F + S + +A T + R + R+D
Sbjct: 160 YTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDF--RADIPRID 217
Query: 174 QLAAHVPVTVIYGSRSWV---DNS---SGDKIKEARSQNSFVQVKSVTGAGHHVYADRAD 227
VP +++G+ +N+ + A V GA H + A+
Sbjct: 218 -----VPALILHGTGDRTLPIENTARVFHKALPSAE-------YVEVEGAPHGLLWTHAE 265
Query: 228 VFNK 231
N
Sbjct: 266 EVNT 269
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 67.5 bits (164), Expect = 5e-13
Identities = 35/237 (14%), Positives = 69/237 (29%), Gaps = 34/237 (14%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+ QL I + L +I +G G Y+ YA+ +PD V+
Sbjct: 78 MEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVE 137
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
L+L + + +D WA L + + +
Sbjct: 138 GLVLINIDPNAKGWMD---------WAAHKLT---------------GLTSSIPDMI--- 170
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA-HV 179
L F+ +S + + AP+ E+ +R +
Sbjct: 171 LGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYW--NSYNNRRDLNFERGGETTLKC 228
Query: 180 PVTVIYGSRS-WVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
PV ++ G ++ D K +Q SF+++ +G + +
Sbjct: 229 PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMA---DSGGQPQLTQPGKLTEAFKY 282
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 67.4 bits (165), Expect = 5e-13
Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 32/239 (13%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
FG SS+ D +T L T +E L L++++L+G S G Y +Y +RV
Sbjct: 61 FGGSSKVNTGYDYDTFAADLHTVLET----LDLRDVVLVGFSMGTGELARYVARYGHERV 116
Query: 60 KHLILADPWG-FPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
L F + D + ++ + +
Sbjct: 117 AKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDR-----------------FAWF 159
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLT--EGLGYAKRPMLHRVDQLA 176
D K F + + S I+E + G + R + V
Sbjct: 160 TDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAG 219
Query: 177 AHVPVTVIYGSRSWV--DNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMV 233
P +++G++ + +++ + +A + V GA H + AD N +
Sbjct: 220 --KPTLILHGTKDNILPIDATARRFHQA-VPEA--DYVEVEGAPHGLLWTHADEVNAAL 273
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 67.3 bits (165), Expect = 5e-13
Identities = 39/248 (15%), Positives = 72/248 (29%), Gaps = 52/248 (20%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S FST + +EE L L + ++GHS +A + DR+
Sbjct: 65 SGQSDLESFSTKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRIS 124
Query: 61 HLILAD------------PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGP 108
+ + GF + ++ L M N N L P+
Sbjct: 125 DITMICPSPCFMNFPPDYVGGFERDDLE-------ELINLMDKNYIGWANYLAPLVMGAS 177
Query: 109 LGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPM 168
++ ++ P F T Y R +
Sbjct: 178 HSSELIGELSGSFCT----------------------TDPIVAKTFAKATFFSDY--RSL 213
Query: 169 LHRVDQLAAHVPVTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRAD 227
L + P + ++ S G + E NS Q++ + GH ++ A
Sbjct: 214 LEDIS-----TPALIFQSAKDSLASPEVGQYMAEN-IPNS--QLELIQAEGHCLHMTDAG 265
Query: 228 VFNKMVND 235
+ ++
Sbjct: 266 LITPLLIH 273
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 65.8 bits (161), Expect = 1e-12
Identities = 36/245 (14%), Positives = 73/245 (29%), Gaps = 41/245 (16%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
G S+ D +T L + + L L+++ L+ HS GG Y ++ R+
Sbjct: 57 HGHSTPVWDGYDFDTFADDLNDLLTD----LDLRDVTLVAHSMGGGELARYVGRHGTGRL 112
Query: 60 KHLILADPW-GFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+ +L KS ++ + + +F + R
Sbjct: 113 RSAVLLSAIPPVMIKSDKNPDGVPDEVFDALKNGVLTER-----SQFWKDTAEGFFSANR 167
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
P + + + + + E + L + D
Sbjct: 168 PG---------NKVTQGNKDAFWYMAMAQTI-EGGVRCVDAFGYTDFTEDLKKFD----- 212
Query: 179 VPVTVIYGSRSWV---DNS---SGDKIKEARSQNSFVQVKSVTGAGH--HVYADRADVFN 230
+P V++G V D + S I A +K G+ H + + FN
Sbjct: 213 IPTLVVHGDDDQVVPIDATGRKSAQIIPNAE-------LKVYEGSSHGIAMVPGDKEKFN 265
Query: 231 KMVND 235
+ + +
Sbjct: 266 RDLLE 270
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 66.4 bits (162), Expect = 2e-12
Identities = 40/242 (16%), Positives = 76/242 (31%), Gaps = 44/242 (18%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
FG+SS+P D +T L T +E L LQ+ +L+G S G Y Y R+
Sbjct: 62 FGQSSQPTTGYDYDTFAADLNTVLET----LDLQDAVLVGFSMGTGEVARYVSSYGTARI 117
Query: 60 KHLILAD--PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
+ + +P A+ + ++ + +
Sbjct: 118 AAVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADR-----------------YAF 160
Query: 118 RPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAK--RPMLHRVDQL 175
F + + + I+E + + + F + R + R+D
Sbjct: 161 YTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRID-- 218
Query: 176 AAHVPVTVIYGSRSWV---DNS---SGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVF 229
VP +++G+ +N+ + A V GA H + A+
Sbjct: 219 ---VPALILHGTGDRTLPIENTARVFHKALPSAE-------YVEVEGAPHGLLWTHAEEV 268
Query: 230 NK 231
N
Sbjct: 269 NT 270
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 64.3 bits (157), Expect = 5e-12
Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 29/212 (13%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMI 90
L Q ++L+GHS G LA A A P ++K LIL + P + K
Sbjct: 92 LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVEL-PLP---AEESKKESAVNQLTTC 147
Query: 91 GNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSG 150
+ + P ++R + + +E S + + Q G
Sbjct: 148 LDYLSSTPQHPIF----PDVATAASRLR----QAIPSLSEEFSYILAQR----ITQPNQG 195
Query: 151 ESAFHT---LTEGLGYAKRPMLHRVDQLAA-----HVPVTVIYGSRSWVDNSSG-DKIKE 201
+ + + Q VP T++YG S ++ + K
Sbjct: 196 GVRWSWDAIIRTRSILGLNNLPGGRSQYLEMLKSIQVPTTLVYGDSSKLNRPEDLQQQKM 255
Query: 202 ARSQNSFVQVKSVTGAGHHVYADRADVFNKMV 233
+Q V + GH+++ D A ++
Sbjct: 256 TMTQAKRVFL----SGGHNLHIDAAAALASLI 283
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 62.6 bits (152), Expect = 9e-12
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S E + + L+L +++ S G + + ++
Sbjct: 72 LGHSKEAAAPAPIG--ELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGSQLP 129
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWA 87
+ P + + + K P
Sbjct: 130 GFVPVAPICTDKINAANYASVKTPALI 156
Score = 29.9 bits (67), Expect = 0.81
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 177 AHVPVTVIYGSRSWVDNSSGDKIKEARS-QNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
P ++YG + D + + N V + + GAGH Y D+ + ++ + D
Sbjct: 150 VKTPALIVYGDQ---DPMGQTSFEHLKQLPNHRVLI--MKGAGHPCYLDKPEEWHTGLLD 204
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 63.9 bits (156), Expect = 1e-11
Identities = 33/246 (13%), Positives = 79/246 (32%), Gaps = 32/246 (13%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S++P + V ++ + L L +M+L+ H +G + +A PDRV
Sbjct: 67 MGDSAKPDIEYRLQD----HVAYMDGFIDALGLDDMVLVIHDWGSVIGMRHARLNPDRVA 122
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+ + P + +A + ++ + V G + VE + P+
Sbjct: 123 AVAFMEALVPPALPMPSYEA----MGPQLGPLFRDLRTADVGEKMV-LDGNFFVETILPE 177
Query: 121 --LPKKFTPVLKEDSSAITEYIFQCNVQAPSGES---------AFHTLTEGLGYAKRPML 169
+ + + + + Y P+ +S E +
Sbjct: 178 MGVVRSLSE---AE---MAAYR----APFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLK 227
Query: 170 HRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVF 229
+ +A+ +P + + + + ++V+ V H + D +
Sbjct: 228 NGEWLMASPIPKLLFHAEPGALAPKPV--VDYLSENVPNLEVRFVGAGTHFLQEDHPHLI 285
Query: 230 NKMVND 235
+ + D
Sbjct: 286 GQGIAD 291
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 63.1 bits (154), Expect = 1e-11
Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 28/234 (11%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP-DRV 59
GRSS+ D + + + L +Q + +GHS GG Y ++P D+V
Sbjct: 60 HGRSSQVWDGHDMDHYADDVAAVVAH----LGIQGAVHVGHSTGGGEVVRYMARHPEDKV 115
Query: 60 KHLILADPWG-FPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+L ++ ++ + N + GP +
Sbjct: 116 AKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGY------ 169
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
P ++ I + Q + + + L +
Sbjct: 170 ------NRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDF--TEDLKGIQ----- 216
Query: 179 VPVTVIYGSRS-WVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
PV V++G V + + N +K+ G H + ADV N
Sbjct: 217 QPVLVMHGDDDQIVPYENSGVLSAKLLPNG--ALKTYKGYPHGMPTTHADVINA 268
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 63.0 bits (154), Expect = 1e-11
Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 49/244 (20%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G + + ++ Q+ + + ++ ++GH+ G + A+ YP V
Sbjct: 52 TGNNPDTL--AEDYSIA-QMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVT 108
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
LI + W I+ + R+ + G Q VE
Sbjct: 109 VLISVNGWL----RINAHTRRCFQVRERL-------------LYSGGA--QAWVEAQPLF 149
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYA-KRPMLHRVDQLAAHV 179
L + + E + G++ L A R+
Sbjct: 150 L---YPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRI-----RC 201
Query: 180 PVTVIYGSRSWVDNSSG--------DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
PV +I S D + +++ + + GH + FN
Sbjct: 202 PVQIICASD---DLLVPTACSSELHAALPDSQ----KMVMP---YGGHACNVTDPETFNA 251
Query: 232 MVND 235
++ +
Sbjct: 252 LLLN 255
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain,
catalytic triad (A His272, Glu130), mutant, I135F,
haloalkanes; 0.95A {Rhodococcus SP} PDB: 3fwh_A 3fbw_A
3rlt_A 3rk4_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A
Length = 299
Score = 62.6 bits (153), Expect = 2e-11
Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 12/131 (9%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G+S +P + V ++ + + L L+E++L+ H +G L F +A + P+RVK
Sbjct: 69 MGKSDKPDLDYFFDD----HVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+ + + + ++ A + ++ +
Sbjct: 125 GIACMEFIRPFPTWDEWPEFARETFQA--------FRTADVGRELIIDQNAFIEGALPKC 176
Query: 121 LPKKFTPVLKE 131
+ + T V +
Sbjct: 177 VVRPLTEVEMD 187
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 61.9 bits (151), Expect = 3e-11
Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 45/242 (18%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD--- 57
G + + + +++ +IL+G+S GG L Q
Sbjct: 54 HGTNPERH-CDNFAEAVEMIEQTVQA--HVTSEVPVILVGYSLGGRLIMHGLAQGAFSRL 110
Query: 58 RVKHLILADPWGFPQKSIDPQKASKI---PLWARMIGNLYKNFNPLWPVRFVGPLGQWVV 114
++ I+ G + +KA++ WA+ P+ +
Sbjct: 111 NLRGAIIEG--GHFGLQENEEKAARWQHDQQWAQRFSQQ--------------PIEHVLS 154
Query: 115 EKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQ 174
+ + V + + + S+ + AK+P + +
Sbjct: 155 DWYQQ-------AVFSSLNHEQRQTLIAQRSANL--GSSVAHMLLATSLAKQP--YLLPA 203
Query: 175 LAA-HVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMV 233
L A +P+ + G + K ++ +++S + V AGH+V+ ++ F K+V
Sbjct: 204 LQALKLPIHYVCGEQD-------SKFQQL-AESSGLSYSQVAQAGHNVHHEQPQAFAKIV 255
Query: 234 ND 235
Sbjct: 256 QA 257
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A
{Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Length = 316
Score = 61.2 bits (149), Expect = 9e-11
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
FG+S +P + V ++ + ++ + L+ +G LAF A + PD V+
Sbjct: 66 FGQSGKPDIAYRFFD----HVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVR 121
Query: 61 HLILAD---PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
L + P Q + A + K P + +V +
Sbjct: 122 GLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARAVFRKFRTPGEGEAMILEANAFVERVL 181
Query: 118 RPDLPKKFTP 127
+ +K
Sbjct: 182 PGGIVRKLGD 191
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 58.7 bits (142), Expect = 2e-10
Identities = 20/86 (23%), Positives = 33/86 (38%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
FGRS+ + I ++ K + +++G S GG + +QYPD V
Sbjct: 67 FGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVARSVIMGASMGGGMVIMTTLQYPDIVD 126
Query: 61 HLILADPWGFPQKSIDPQKASKIPLW 86
+I P D +K + L
Sbjct: 127 GIIAVAPAWVESLKGDMKKIRQKTLL 152
Score = 27.9 bits (62), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 197 DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
KE S S +++ V G+GH VY ++ + F ++ D
Sbjct: 164 ALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVD 202
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 59.0 bits (143), Expect = 3e-10
Identities = 26/237 (10%), Positives = 60/237 (25%), Gaps = 36/237 (15%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRV 59
D +T L + + +++ ++ S G ++ Q R+
Sbjct: 58 HDAKQTDSGDFDSQT----LAQDLLAFIDAKGIRDFQMVSTSHGCWVNIDVCEQLGAARL 113
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
I+ D P W ++ + + +W
Sbjct: 114 PKTIIIDWLLQPHP----------GFWQQLAEGQHP---TEYVAGRQSFFDEWAETTDNA 160
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGY-AKRPMLHRVDQLAAH 178
D+ L+ + ++ + Y L R+D L
Sbjct: 161 DVL----NHLRNEMPWFHGEMW-----QRACREIEA------NYRTWGSPLDRMDSLPQK 205
Query: 179 VPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMVND 235
+ IY D E + +S+ + + G H + + + +
Sbjct: 206 PEICHIYSQPLSQD--YRQLQLEFAAGHSWFHPRHIPGRTHFPSLENPVAVAQAIRE 260
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 57.7 bits (140), Expect = 9e-10
Identities = 45/239 (18%), Positives = 78/239 (32%), Gaps = 38/239 (15%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHS-FGGYLAFAYAIQYPDRV 59
GRS +P D +T + E L L+ + +GHS GG +A A P RV
Sbjct: 59 HGRSDQPSTGHDMDTYAADVAALTEA----LDLRGAVHIGHSTGGGEVARYVARAEPGRV 114
Query: 60 KHLILADPWG-FPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+L KS + ++ L N + GP + E
Sbjct: 115 AKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGAT 174
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
S + ++ + + + + + + L R+D
Sbjct: 175 V-------------SQGLIDHWWLQGMMGAA-NAHYECIAAFSETDFTDDLKRID----- 215
Query: 179 VPVTVIYGSRSWV---DNS---SGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
VPV V +G+ V ++ S + + A +KS G H + + +V N
Sbjct: 216 VPVLVAHGTDDQVVPYADAAPKSAELLANAT-------LKSYEGLPHGMLSTHPEVLNP 267
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 57.6 bits (140), Expect = 1e-09
Identities = 39/244 (15%), Positives = 75/244 (30%), Gaps = 27/244 (11%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
FG S +P + + + L +++ ++GH F + + +Y DRV
Sbjct: 66 FGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVI 125
Query: 61 HLILADP--WGFPQKSIDPQKASKIPLWARMIGNLYKNFNPL-WPVRFVGPLGQWVVEKM 117
+ DP F + W Y F+ L V VG + +
Sbjct: 126 KAAIFDPIQPDFGPVYFGLGHVHE--SW-------YSQFHQLDMAVEVVGSSREVCKKYF 176
Query: 118 RPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGY----AKRPMLHRVD 173
+ F +TE + +V H G Y + D
Sbjct: 177 K-----HFFDHWSYRDELLTEEELEVHVDNCMKPDNIHG---GFNYYRANIRPDAALWTD 228
Query: 174 QLAA--HVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
+PVT+I+G I+ S ++++ GH + ++ ++
Sbjct: 229 LDHTMSDLPVTMIWGLGDTCV-PYAPLIEFVPKYYSNYTMETIEDCGHFLMVEKPEIAID 287
Query: 232 MVND 235
+
Sbjct: 288 RIKT 291
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 57.3 bits (139), Expect = 1e-09
Identities = 45/243 (18%), Positives = 73/243 (30%), Gaps = 52/243 (21%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G SS P P T+ +L + E L+++ LG S GG + A+ P R++
Sbjct: 64 HGASSVP---PGPYTLA-RLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIE 119
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
L+LA+ + P W I + + + +
Sbjct: 120 RLVLANTSA----WLGPAAQ-----WDERIAAVLQA-------EDMSETAAGFLGNW--- 160
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVP 180
F P L E + + E + A + + R L R++ P
Sbjct: 161 ----FPPALLERAEPVVERFRA-MLMATNRHGLAGSFAAVRDTDLRAQLARIE-----RP 210
Query: 181 VTVIYGSRSWVDNSSG--------DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232
VI G+ D + I AR V + A H + F
Sbjct: 211 TLVIAGAY---DTVTAASHGELIAASIAGAR----LVTL----PAVHLSNVEFPQAFEGA 259
Query: 233 VND 235
V
Sbjct: 260 VLS 262
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 56.9 bits (138), Expect = 2e-09
Identities = 51/243 (20%), Positives = 72/243 (29%), Gaps = 53/243 (21%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S P P T+E QL + LK+ G S GG A A ++ DR++
Sbjct: 63 HGHSEAP---KGPYTIE-QLTGDVLGLMDTLKIARANFCGLSMGGLTGVALAARHADRIE 118
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+ L + I + W R G + + +
Sbjct: 119 RVALCNTAA----RIGSPEV-----WVPRAVK----------ARTEGM--HALADAV--- 154
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVP 180
LP+ FT E + I E RP + VP
Sbjct: 155 LPRWFTADYMEREPVVLAMIRD-VFVHTDKEGYASNCEAIDAADLRPEAPGI-----KVP 208
Query: 181 VTVIYGSRSWVDNSSG--------DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKM 232
VI G+ D ++ I AR +V A H +RAD F K
Sbjct: 209 ALVISGTH---DLAATPAQGRELAQAIAGAR----YV----ELDASHISNIERADAFTKT 257
Query: 233 VND 235
V D
Sbjct: 258 VVD 260
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 56.5 bits (137), Expect = 2e-09
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 12/125 (9%)
Query: 1 FGRSSRPR-FSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
G+S R +D R ++ ++ +K+ + LLGHS GG +A A + P
Sbjct: 80 HGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHF 139
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLG----QWVVE 115
++L P + + + + P + + V+
Sbjct: 140 AGMVLISPLVLA-------NPESATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVD 192
Query: 116 KMRPD 120
D
Sbjct: 193 IYNSD 197
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 56.5 bits (135), Expect = 3e-09
Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 16/208 (7%)
Query: 20 LVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY-PDRVKHLILADPWGFPQKSIDPQ 78
+ + +++ + + L G SFGG A Y+ Y + +K LIL D G P K
Sbjct: 130 IKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLD--GGPTKHGIRP 187
Query: 79 KASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKE---DSSA 135
K + + + P+ + + P + + DS
Sbjct: 188 KFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLY 247
Query: 136 ITEYIFQCNVQAPSGESAFHTL-TEGLGYAKRPMLHRVDQL---AAHVPVTVIYGSRSWV 191
+T + E F L + + R L R + VP R +
Sbjct: 248 VTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDLKFDYEGILVPTIAFVSERFGI 307
Query: 192 DNSSGDKIKEARSQNSFVQVKSVTGAGH 219
+ ++ + G GH
Sbjct: 308 QIFDSKILPSNS------EIILLKGYGH 329
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 56.2 bits (136), Expect = 4e-09
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 12/125 (9%)
Query: 1 FGRSSRPR-FSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
G+S R +D R ++ ++ +K+ + LLGHS GG +A A + P
Sbjct: 98 HGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHF 157
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLG----QWVVE 115
++L P + + + P + + + V+
Sbjct: 158 AGMVLISPLVLA-------NPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVD 210
Query: 116 KMRPD 120
D
Sbjct: 211 IYNSD 215
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 54.7 bits (132), Expect = 8e-09
Identities = 37/239 (15%), Positives = 59/239 (24%), Gaps = 48/239 (20%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G S P VER + + + G S G L+ A +
Sbjct: 60 RGDSGDT----PPYAVER-EIEDLAAIIDAAGG-AAFVFGMSSGAGLSLLAAASGLPITR 113
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
+ P+ P P + L + E R D
Sbjct: 114 LAVFEPPYAVDDSR------------------------PPVPPDYQTRLDALLAEGRRGD 149
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAA-HV 179
F + + Q + P E+ HTL + + A+ +
Sbjct: 150 AVTYFMTEGVGVPPDLVAQMQQAPM-WPGMEAVAHTLPYDHAVMGDNTIPT-ARFASISI 207
Query: 180 PVTVIYGSRSWVDNSSG-----DKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNKMV 233
P V+ G S D I AR ++ H V D ++
Sbjct: 208 PTLVMDGGASPAWIRHTAQELADTIPNAR-------YVTLENQTHTV---APDAIAPVL 256
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 54.9 bits (132), Expect = 8e-09
Identities = 39/247 (15%), Positives = 66/247 (26%), Gaps = 32/247 (12%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
GRS+ F+ P +L + ++G S G + A+ + DR+
Sbjct: 62 TGRSTTRDFAAHPYGFG-ELAADAVAVLDGWGVDRAHVVGLSMGATITQVIALDHHDRLS 120
Query: 61 HLILADPWGF--PQKSIDPQKASKIPLWARMIGNLYKNFNPLW----PVRFVGPLGQWVV 114
L + G + + P + G + L P V
Sbjct: 121 SLTMLLGGGLDIDFDANIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRV 180
Query: 115 EKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQ 174
K R P + + E + A H ++ L V
Sbjct: 181 SKWRILSGTGV-PFDDAEYARWEERAIDHAGGVLAEPYA-HYSLTLPPPSRAAELREVT- 237
Query: 175 LAAHVPVTVIYGSRSWVDN----SSG----DKIKEARSQNSFVQVKSVTGAGHHVYADRA 226
VP VI D G I AR ++ G GH + +
Sbjct: 238 ----VPTLVIQAEH---DPIAPAPHGKHLAGLIPTAR----LAEIP---GMGHALPSSVH 283
Query: 227 DVFNKMV 233
+++
Sbjct: 284 GPLAEVI 290
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 54.8 bits (132), Expect = 1e-08
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 1 FGRSSRP-RFSTDPETVERQLVTSIEEWRKELKLQEMILL-GHSFGGYLAFAYAIQYPDR 58
G+S + S + W + L L + I+ GH +G LAF YA ++ DR
Sbjct: 80 MGKSGKSGNGSYRLLD----HYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 135
Query: 59 VKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQW-VVEKM 117
+K ++ + +S D + + K L FV + ++ K+
Sbjct: 136 IKAIVHMESVVDVIESWDEWPDIEEDIALIKSEEGEKMV--LENNFFVETVLPSKIMRKL 193
Query: 118 RPD 120
P+
Sbjct: 194 EPE 196
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 54.0 bits (130), Expect = 1e-08
Identities = 36/175 (20%), Positives = 55/175 (31%), Gaps = 23/175 (13%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQ--EMILLGHSFGGYLAFAYAIQYPDR 58
G T V S+EE LK + + + G S GG L A +PD
Sbjct: 78 HGTHYEDMERTTFH----DWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDI 133
Query: 59 VKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKN--FNPLW----PVRFVGPLGQW 112
+ + P + ++P + IG+ KN L P + L
Sbjct: 134 CGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQL-AR 192
Query: 113 VVEKMRPDLPKKFTPVL----KED---SSAITEYIFQCNVQAPSGESAFHTLTEG 160
++ + + L + P L ED + IFQ S E L
Sbjct: 193 LMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQ---GISSTEKEIVRLRNS 244
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 54.3 bits (131), Expect = 1e-08
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 4/122 (3%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMI-LLGHSFGGYLAFAYAIQYPDRV 59
G S + S + + L L + + L+ H +G L F +A Q+ DRV
Sbjct: 65 MGASDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRV 124
Query: 60 KHLILADPWGFPQKSID-PQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+ + + P D P + R V V L ++ ++
Sbjct: 125 QGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQGEPMALEHNIFVERV--LPGAILRQLS 182
Query: 119 PD 120
+
Sbjct: 183 DE 184
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane
dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase;
0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB:
1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A
1iz8_A* 1k5p_A 1k63_A 1k6e_A
Length = 302
Score = 53.6 bits (129), Expect = 2e-08
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMI-LLGHSFGGYLAFAYAIQYPDRV 59
G S + S + ++ + L L + + L+ H +G L F +A ++ +RV
Sbjct: 66 MGDSDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERV 125
Query: 60 KHLILADPWGFPQKSIDPQKASKIPLWAR 88
+ + + P + D + + A
Sbjct: 126 QGIAYMEAIAMPIEWADFPEQDRDLFQAF 154
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 53.6 bits (129), Expect = 3e-08
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
FG+S +P + T E + + L L+ + L+ +GG+L + P R K
Sbjct: 85 FGKSDKPV-DEEDYTFEF-HRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFK 142
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
LI+ + DP + + + + L Q +++ P
Sbjct: 143 RLIIMNAXLMT----DPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQ-FMKRWAPT 197
Query: 121 LPK 123
L +
Sbjct: 198 LTE 200
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 53.3 bits (128), Expect = 3e-08
Identities = 38/245 (15%), Positives = 75/245 (30%), Gaps = 52/245 (21%)
Query: 5 SRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ-YPDRVKHLI 63
S + D V + ++L+GHS GG +A A + L
Sbjct: 89 SAETMAKDVGNVVEAM--------YGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLC 140
Query: 64 LADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPK 123
+ D + A N +NF P F +E +
Sbjct: 141 MIDV---------------VEGTAMDALNSMQNFLRGRPKTFKS------LENA-IEWSV 178
Query: 124 KFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQ--------- 174
K + +S+ ++ V+ G ++ + Y R L + ++
Sbjct: 179 KSGQIRNLESARVSMVG---QVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGL 235
Query: 175 ----LAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFN 230
L+ +P ++ +D I + + + Q++ + GH V+ D D
Sbjct: 236 SNLFLSCPIPKLLLLAGVDRLD--KDLTIGQMQGK---FQMQVLPQCGHAVHEDAPDKVA 290
Query: 231 KMVND 235
+ V
Sbjct: 291 EAVAT 295
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 52.3 bits (126), Expect = 6e-08
Identities = 30/244 (12%), Positives = 77/244 (31%), Gaps = 30/244 (12%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMI-LLGHSFGGYLAFAYAIQYPDRV 59
G+S P+ E V L + L+ H G + + ++ +
Sbjct: 67 LGQSEPPKTGYSGEQVAVYLHKLARQ----FSPDRPFDLVAHDIGIWNTYPMVVKNQADI 122
Query: 60 KHLILAD---PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEK 116
L+ + P + + +W + +F L + ++
Sbjct: 123 ARLVYMEAPIPDARIYRFPAFTAQGESLVW-------HFSFFAADD-----RLAETLIAG 170
Query: 117 MRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGY--AKRPMLHRVDQ 174
+ F ++ +E + ++ + + + Y A + + +
Sbjct: 171 KERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNA---SFEYYRALNESVRQNAE 227
Query: 175 LAAH---VPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
LA +P + G + ++++ ++ V+ + G GH + + A N+
Sbjct: 228 LAKTRLQMPTMTLAGGGAGG--MGTFQLEQMKAYAEDVEGHVLPGCGHWLPEECAAPMNR 285
Query: 232 MVND 235
+V D
Sbjct: 286 LVID 289
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 51.5 bits (124), Expect = 1e-07
Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 27/244 (11%)
Query: 1 FGRSSRPRFSTDPETVE-RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
+G SS+P + D R + + E + L + L+GH+ GG A+ +PD V
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSV 121
Query: 60 KHLILAD--PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
L + D P + +D A W + +P + +G E
Sbjct: 122 LSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQ------QPAPYPEKVIGADPDTFYEGC 175
Query: 118 RPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGY--AKRPMLHRVDQL 175
+ + + +A H A + +D
Sbjct: 176 -------LFGWGATGADGFDPEQLEEYRKQWRDPAAIHG---SCCDYRAGGTIDFELDHG 225
Query: 176 AA----HVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRADVFNK 231
P V GS + +S + + + ++ S+ G GH D +
Sbjct: 226 DLGRQVQCPALVFSGSAGLM-HSLFEMQVVWAPRLANMRFASLPG-GHFFVDRFPDDTAR 283
Query: 232 MVND 235
++ +
Sbjct: 284 ILRE 287
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 51.3 bits (123), Expect = 1e-07
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
FGRS +P T S+ + L+L+ + L+ +GG L + P V
Sbjct: 84 FGRSDKPT-DDAVYTFGF-HRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVD 141
Query: 61 HLILAD---PWGFP 71
LI+ + G
Sbjct: 142 RLIVMNTALAVGLS 155
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 49.5 bits (119), Expect = 5e-07
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 1 FGRSSRPRFSTDPETVE-RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
+G SSRP R + E +L ++ ++GH G +A A+ +P RV
Sbjct: 62 YGDSSRPASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRV 121
Query: 60 KHLILAD--PWGFPQKSIDPQKASKIPLW 86
K L L D P ++ D + A+ W
Sbjct: 122 KKLALLDIAPTHKMYRTTDQEFATAYYHW 150
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 49.0 bits (117), Expect = 6e-07
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 20 LVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
+ + + ++ + L+GH+ GG +A A YPD +K ++L P
Sbjct: 105 ANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP 152
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 47.9 bits (113), Expect = 2e-06
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 4 SSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63
SRP S D T LV IE R+ +++ ++ G S+G LA AYA +P+RV ++
Sbjct: 76 RSRPHASLDNNT-TWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMV 134
Query: 64 LADPWGFPQKSID 76
L + ++ +
Sbjct: 135 LRGIFTLRKQRLH 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 2e-06
Identities = 50/407 (12%), Positives = 106/407 (26%), Gaps = 111/407 (27%)
Query: 4 SSRPRFSTDPE-----TVER-QLVTSIEEWRKELKLQEMILLGHSFGGY----LA----F 49
R R D + V R Q + + EL+ + +L+ G +A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL 172
Query: 50 AYAIQ--YPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVG 107
+Y +Q ++ W ++ + + M+ L +P W R
Sbjct: 173 SYKVQCKMDFKIF-------W------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 108 PLG-----QWVVEKMRPDLPKKFTP----VLKE--DSSAITEYIFQCNVQAPSGESAFHT 156
+ ++R L K VL ++ A + C + +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 157 LTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTG 216
+ H L +++ ++D D +E + N S+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRL--SIIA 334
Query: 217 AGHHVYADRADVFNKMVNDTCT----LSDEKLDIVTTKA-----------VK-PPK---- 256
D + + D T S L+ + P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 257 -----EPQEPEEEVKE-------EEERKK----------EEEKKKEEDGQ-HQQ-----D 288
+ V + E++ K+ E + K E + H+ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 289 KARSVTFMTLGIVMVSMMILMTLLTMFLVLFGLGYYFSYLKTHFVKL 335
++ L + Y++S++ H +
Sbjct: 455 IPKTFDSDDLIPPYLD-----------------QYFYSHIGHHLKNI 484
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 47.3 bits (113), Expect = 3e-06
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 1 FGRSSRPRFSTDPETVE-RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
+G S P R + + E ++L L GH+ G +++ A+ P R+
Sbjct: 70 YGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRL 129
Query: 60 KHLILADP 67
L + D
Sbjct: 130 SKLAVLDI 137
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 46.2 bits (110), Expect = 5e-06
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 24 IEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLIL 64
++ +K + ++ + GHS GG A D +K LI
Sbjct: 90 VDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIP 130
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 45.3 bits (107), Expect = 1e-05
Identities = 23/169 (13%), Positives = 44/169 (26%), Gaps = 29/169 (17%)
Query: 17 ERQLVTSIEEWRKEL---------KLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
+ + + W E K ++ + G S GG A P + + P
Sbjct: 67 DILTKGNPDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSP 126
Query: 68 WGFPQKSIDPQKASKIPLWARMIGNLYKNFNPL----WPVRFVGPLGQWVVEKMRPDLPK 123
+ + P R+ G ++ L + + V DL
Sbjct: 127 ILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTV----AADLNL 182
Query: 124 KFTPVL----KED---SSAITEYIFQCNVQAPSG-----ESAFHTLTEG 160
P +D + + + A + A H +T
Sbjct: 183 VKQPTFIGQAGQDELVDGRLAYQLRDALINAARVDFHWYDDAKHVITVN 231
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 45.6 bits (107), Expect = 1e-05
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 4 SSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63
S P T LV IE R L + + G S+G LA AYA +P +V L+
Sbjct: 73 RSTPHADLVDNTT-WDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTELV 131
Query: 64 LADPWGFPQKSID 76
L + + ++
Sbjct: 132 LRGIFLLRRFELE 144
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 44.8 bits (105), Expect = 1e-05
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 12 DPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD-----RVKHLI-LA 65
P+ + L ++E+ + +M +GHS GG YA Y ++ L+ +
Sbjct: 72 TPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIG 131
Query: 66 DPWGFPQKSIDPQKAS--KIPLWARMIGNLYKNFNPLWP 102
P+ + + S K+P + KN + P
Sbjct: 132 SPFNDLDPNDNGMDLSFKKLPNSTPQMDYFIKNQTEVSP 170
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 44.6 bits (105), Expect = 2e-05
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G SS+ + D + + ++ + + + L+G FGG + +++K
Sbjct: 232 VGYSSKYPLTEDYSRLHQAVLNELFS-IPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIK 290
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMI 90
++ PQK ++P +
Sbjct: 291 ACVILGA-PIHDIFASPQKLQQMPKMYLDV 319
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 43.2 bits (102), Expect = 2e-05
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 7 PRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY--PDRVKHLI- 63
+ L +++ E +++ ++ HS GG Y ++V +++
Sbjct: 42 WDKTGTNYNNGPVLSRFVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVT 101
Query: 64 LADPW 68
L
Sbjct: 102 LGGAN 106
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 44.0 bits (104), Expect = 2e-05
Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 52/237 (21%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G T P+ + ++ E K +++ + G S GG + P ++
Sbjct: 54 HGVPPEELVHTGPDDWWQDVMNGYEFL-KNKGYEKIAVAGLSLGGVFSLKLGYTVP--IE 110
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
++ I M + + + +E+
Sbjct: 111 GIVTMCA------------PMYIKSEETMYEGVLEYAREYKKRE---GKSEEQIEQEMEK 155
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVP 180
+ LK L + R L + + P
Sbjct: 156 FKQTPMKTLKA----------------------LQELIADV----RDHLDLI-----YAP 184
Query: 181 VTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADR-ADVFNKMVND 235
V+ ++ S + I ++ Q+K +GH + D+ D ++ +
Sbjct: 185 TFVVQARHDEMINPDSANIIYN-EIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYA 240
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 44.2 bits (104), Expect = 3e-05
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 1 FGRSSRPRFSTDPE--TVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
+GRSS+ + ++ +LV + ++ ++GH +G +A+ +A +PDR
Sbjct: 65 YGRSSKY---RVQKAYRIK-ELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDR 120
Query: 59 VKHLI 63
++
Sbjct: 121 CAGVV 125
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 43.0 bits (101), Expect = 5e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 1 FGRSSRPRFSTDPETVER---QLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD 57
F R+ + D +ER ++ I+ R+ + +I LG S G + I+ P+
Sbjct: 107 FRRTGEGVY--DMVDLERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPE 164
Query: 58 RVKHLILADPWGFPQKSIDPQKASKIPLW 86
+L P P + +
Sbjct: 165 LFDAAVLMHPL-IPFEPKISPAKPTRRVL 192
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 43.0 bits (101), Expect = 9e-05
Identities = 44/265 (16%), Positives = 90/265 (33%), Gaps = 56/265 (21%)
Query: 1 FGRSSRPRFSTDPE--TVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
+G SS P + E +E L + + +L L + + +GH +GG L + A+ YP+R
Sbjct: 296 YGESSAP---PEIEEYCME-VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPER 351
Query: 59 VKHLILAD----PWGFPQKSIDPQKASK---------IPLWA---------RMIGNLYKN 96
V+ + + P ++ KA+ P A R +L++
Sbjct: 352 VRAVASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRA 411
Query: 97 FNPLW-PVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFH 155
+ + V G V S +TE Q VQ +S F
Sbjct: 412 SDESVLSMHKVCEAGGLFVNSPEEP----------SLSRMVTEEEIQFYVQQFK-KSGFR 460
Query: 156 -------TLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWV-DNSSGDKIKEARSQNS 207
+ +A + + ++ +P ++ + +V +++
Sbjct: 461 GPLNWYRNMERNWKWACKSLGRKIL-----IPALMVTAEKDFVLVPQMSQHMEDWIPH-- 513
Query: 208 FVQVKSVTGAGHHVYADRADVFNKM 232
++ + GH D+ N++
Sbjct: 514 -LKRGHIEDCGHWTQMDKPTEVNQI 537
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.3 bits (96), Expect = 1e-04
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 253 KPPKEPQEPE------EEVKEEEERKKEEEKKKEEDGQHQQDK 289
+ + QEPE EE ++ + K E++ + + K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 35.5 bits (81), Expect = 0.010
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 256 KEPQEPEEEVKEEEERKK-----EEEKKKEEDGQHQQDK 289
+E Q + + + E+ KK E+ +Q +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Score = 28.6 bits (63), Expect = 2.0
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Query: 4 SSRPRFSTDPETVERQLVTSIEEWRKE--LKLQEM 36
+ R + +PE SI +WR+E +LQE+
Sbjct: 75 AQADRLTQEPE--------SIRKWREEQRKRLQEL 101
Score = 28.6 bits (63), Expect = 2.2
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 242 EKLDIVTTKAVKPPKEPQEPE-----EEVKEEEERKKEEEKKKEEDGQHQQD 288
++LD + + +E + + + E+ E+ K + ++ Q D
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 26.7 bits (58), Expect = 8.4
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 240 SDEKLDIVTTKAVKPPKEPQEPEEEVKE---EEERKKEEE--KKKEED 282
S KA K +E + + E E R ++ ++ + D
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 42.0 bits (98), Expect = 2e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI-LADPW 68
QL+ ++ ++ L+GHS GG + A PD V + + P
Sbjct: 63 EQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 68/182 (37%)
Query: 85 LWARM-----------IGNLYKNFNPLW-PVRFVGPLGQWVVEKMR-------PDLPKKF 125
+W R I ++ N NP+ + F G G+ + E D K
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 126 TPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQ---LAAHVPVT 182
+ KE + T Y F E + T+ + Q
Sbjct: 1704 EKIFKEINEHSTSYTF-------RSEKGLLSATQ---FT---------QPALTLMEK--- 1741
Query: 183 VIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHV--Y---ADRADVFNKMVNDTC 237
+ ++ +S+ + AGH + Y A ADV + +
Sbjct: 1742 AAF--------------EDLKSKGLIPADATF--AGHSLGEYAALASLADVMS--IESLV 1783
Query: 238 TL 239
+
Sbjct: 1784 EV 1785
Score = 38.1 bits (88), Expect = 0.004
Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 65/202 (32%)
Query: 20 LVTSI---EEWRKE-LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSI 75
+ E+ + + L + GHS G Y A A ++ AD +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA-SL-----------AD-------VM 1777
Query: 76 DPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDS-S 134
+ ++ ++ R G + P LG+ M P + +++
Sbjct: 1778 SIESLVEV-VFYR--GMTMQVAVP------RDELGRSNY-GMIAINPGRVAASFSQEALQ 1827
Query: 135 AITEYIFQCN---VQA-----P------SGE-SAFHTLTEGLGYAKRPMLHRVDQLAAHV 179
+ E + + V+ +G+ A T+T L + K L ++D +
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK---LQKID--IIEL 1882
Query: 180 PVTVIYGSRSWVDNSSGDKIKE 201
++ S ++++
Sbjct: 1883 QKSL-----------SLEEVEG 1893
Score = 35.0 bits (80), Expect = 0.034
Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 59/188 (31%)
Query: 49 FAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGP 108
F A Q ++ ++ GF D + + L + +G +
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAA---DDEPTTPAELVGKFLG-----Y----------- 67
Query: 109 LGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAF------HTLTEGLG 162
V + P +F VL +TE F E+ + H L
Sbjct: 68 ----VSSLVEPSKVGQFDQVLN---LCLTE--F---------ENCYLEGNDIHALA---- 105
Query: 163 YAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVY 222
AK + + + +R + DK +S ++ + +V +
Sbjct: 106 -AKLLQENDTTLVKTKELIKNYITARI-MAKRPFDK----KSNSALFR--AVGEGNAQLV 157
Query: 223 ADRADVFN 230
A +F
Sbjct: 158 A----IFG 161
Score = 28.1 bits (62), Expect = 5.2
Identities = 30/224 (13%), Positives = 68/224 (30%), Gaps = 79/224 (35%)
Query: 126 TP---VLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVPVT 182
+P + + +Y+ + N P+G+ V ++
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGK--------------------------QVEIS 369
Query: 183 VIYGSRSWVDNSSGDKIKEARSQNSFVQ----VKSVTGAGHHVYADRADVFNKMVNDTCT 238
++ G+++ V SG +S K+ +G D++ +
Sbjct: 370 LVNGAKNLV--VSGP----PQSLYGLNLTLRKAKAPSG------LDQSRI---------P 408
Query: 239 LSDEKLDIVTTKAVKPPKEP------QEPEEEVKEEEERKKEEEKKKE--------EDGQ 284
S+ KL P P + + ++ + K+ DG
Sbjct: 409 FSERKLKFSNR--FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 285 HQQDKARSVTFMTLGIV--MVSMMILMTLLTMF----LVLFGLG 322
+ + S++ IV ++ + + T F ++ FG G
Sbjct: 467 DLRVLSGSISER---IVDCIIRLPVKWETTTQFKATHILDFGPG 507
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 41.3 bits (96), Expect = 2e-04
Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 10 STDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD-----RVKHLI- 63
+ + + + + + + + +Q+ +GHS G Y Y D ++K +
Sbjct: 73 NGNFKENAYWIKEVLSQLKSQFGIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVN 132
Query: 64 LADPWGFPQKSIDPQKASKIPLWARM 89
+A + + + +
Sbjct: 133 IAGVYNGILNMNENVNEIIVDKQGKP 158
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein,
alpha/beta-hydrolases fold, structur genomics; HET: MSE;
1.66A {Pectobacterium atrosepticum SCRI1043}
Length = 191
Score = 40.7 bits (95), Expect = 2e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 23 SIEEWRKELKL------QEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68
++ W ++ Q +IL+GHSFG A Q + + ++L P
Sbjct: 57 DLDRWVLAIRRELSVCTQPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPA 108
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 41.2 bits (96), Expect = 2e-04
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 9/124 (7%)
Query: 3 RSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHL 62
+ + L+T +E +++IL+G S GG A +Y +++
Sbjct: 44 DPRQIEEIGSFDEYSEPLLTFLEALPP---GEKVILVGESCGGLNIAIAADKYCEKIAAA 100
Query: 63 ILAD----PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+ + + + P W Y +G + E +
Sbjct: 101 VFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGF--TLLRENLY 158
Query: 119 PDLP 122
Sbjct: 159 TLCG 162
>1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta
hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB:
2wkw_A*
Length = 328
Score = 40.3 bits (93), Expect = 5e-04
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
+ P + T + + K L +LL HS G F A P +
Sbjct: 168 LWQQMVPDWLGSMPTPNPTVANLSKLAIK---LDGTVLLSHSQSGIYPFQTAAMNPKGIT 224
Query: 61 HLILADPWGFPQKSIDPQKASKIPLW 86
++ +P P+ D + + IP+
Sbjct: 225 AIVSVEPGECPKPE-DVKPLTSIPVL 249
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 40.5 bits (95), Expect = 5e-04
Identities = 37/271 (13%), Positives = 75/271 (27%), Gaps = 56/271 (20%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEM--ILLGHSFGGYLAFAYAIQYPDR 58
+G ++ + + LV + + + E ++ H +G +A+ + PD+
Sbjct: 69 YGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDK 128
Query: 59 VKHLILAD----PWGFPQKSIDPQKASKIPLW--------------------ARMIGNLY 94
VK L+ ++ KA ++ +
Sbjct: 129 VKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKIL 188
Query: 95 KNFNPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAF 154
+P P G+ + + SS ++E ++ F
Sbjct: 189 TYRDPAPFYF---PKGKGLEAIPDAPVAL---------SSWLSEEELDYYANKFE-QTGF 235
Query: 155 H-------TLTEGLGYAKRPMLHRVDQLAAHVPVTVIYGSRSWVDNSSG--DKIKEARSQ 205
L +V VP I G V + G + I +
Sbjct: 236 TGAVNYYRALPINWELTAPWTGAQV-----KVPTKFIVGEFDLVYHIPGAKEYIHNGGFK 290
Query: 206 NSF---VQVKSVTGAGHHVYADRADVFNKMV 233
+V + GA H V +R +K +
Sbjct: 291 KDVPLLEEVVVLEGAAHFVSQERPHEISKHI 321
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway,
coenzyme A, structure-functi studies, alpha-beta
hydrolase fold; 1.65A {Haemophilus influenzae} SCOP:
c.69.1.40
Length = 377
Score = 40.0 bits (94), Expect = 7e-04
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 29/80 (36%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHL-----------------------ILADP-W--GFP 71
++G SFGG A +AI YPD + ++ ++ DP + G
Sbjct: 158 IIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDY 217
Query: 72 QKSIDPQKASKIPLWARMIG 91
+ P + I ARM+G
Sbjct: 218 YEGTPPDQGLSI---ARMLG 234
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 39.1 bits (91), Expect = 8e-04
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 12 DPETVER---QLVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQYPDRVKHLILAD 66
+ +++ E K L LG+S G L + + +P V+ L
Sbjct: 84 EQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLR 143
Query: 67 PWGFPQKSIDPQKASKIPLW 86
P + + I
Sbjct: 144 PM-PVLDHVPATDLAGIRTL 162
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 39.7 bits (92), Expect = 9e-04
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 11 TDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI-LADPWG 69
E QL+ +EE ++ L+GHS GG A PD + + P
Sbjct: 51 DTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHK 110
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 39.7 bits (92), Expect = 9e-04
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 36 MILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWA 87
+ + G S GGY + +++P+ I G ++ IP+W
Sbjct: 265 IYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS---KVERIKDIPIWV 313
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 39.4 bits (92), Expect = 0.001
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKL---QEMILLGHSFGGYLAFAYAIQYPD 57
+ R S + + + L + ++G S+GGYL+ + P
Sbjct: 66 HEGYASMRQSVTRAQNLDDIKAAYD-QLASLPYVDAHSIAVVGLSYGGYLSALLTRERP- 123
Query: 58 RVKHLILADPWGFPQKSIDPQKAS 81
V+ L L P + D K S
Sbjct: 124 -VEWLALRSPALYKDAHWDQPKVS 146
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta
hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces
venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A
1mnq_A
Length = 319
Score = 39.2 bits (91), Expect = 0.001
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD--- 57
+G + + P ++ L + ++LLGH+ G LA A +
Sbjct: 128 YGTGTGTGTALLPADLDTALDAQARAILRAAGDAPVVLLGHAGGALLAHELAFRLERAHG 187
Query: 58 -RVKHLILADPW 68
++L DP+
Sbjct: 188 APPAGIVLVDPY 199
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 38.5 bits (89), Expect = 0.002
Identities = 33/284 (11%), Positives = 72/284 (25%), Gaps = 61/284 (21%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G SS T + + ++ W + Q + L+ S +A+ +
Sbjct: 74 VGLSSGSIDEFTMTT-GKNSLCTVYHWLQTKGTQNIGLIAASLSARVAYEVI--SDLELS 130
Query: 61 HLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRPD 120
LI A + +++ K + + L + +
Sbjct: 131 FLITAVGVVNLRDTLE------------------KALGFDYLSLPIDELPNDLDFEGHKL 172
Query: 121 LPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHVP 180
+ F E + TL L VP
Sbjct: 173 GSEVFVRDCFEHH--------------------WDTLDSTLDKVAN----------TSVP 202
Query: 181 VTVIYGSR-SWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRA---DVFNKMVNDT 236
+ + WV + ++ S+ G+ H + + + + +
Sbjct: 203 LIAFTANNDDWVKQEEVYDMLAHIRTGH-CKLYSLLGSSHDLGENLVVLRNFYQSVTKAA 261
Query: 237 CTLSDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKE 280
+ L+I EP + + ER+ + E +
Sbjct: 262 IAMDGGSLEIDVDFI-----EPDFEQLTIATVNERRLKAEIENR 300
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 37.8 bits (88), Expect = 0.004
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 52/178 (29%)
Query: 10 STDPETVERQL------VTSIEEWRKELKLQEMIL-----------LGHSFGGYLAFAYA 52
S DP+ ++ T+I + +++ +L +G S GG +A
Sbjct: 162 SPDPDAEGQRPYGAKFPRTTIRDD---VRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWA 218
Query: 53 IQYPDRVKHL-----------------------ILADP-W--GFPQKSIDPQKASKIPLW 86
P+ V+ + I DP + G P + +
Sbjct: 219 FFGPEYVRKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLET--- 275
Query: 87 ARMIGNL-YKNFNPLWPVRFVGPLGQWVVEKMR-PDLPKKFTPVLKEDSSAITEYIFQ 142
AR I NL YK+ P RF G + D K+ +S + I
Sbjct: 276 ARKIANLTYKS-KPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRAGQPIEA 332
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 37.2 bits (85), Expect = 0.006
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 18 RQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP---DRVKHLILADP 67
+L I+E E ++ L+GHS G + Y P +V HLIL D
Sbjct: 112 SRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDG 164
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 36.8 bits (85), Expect = 0.006
Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 43/235 (18%)
Query: 3 RSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHL 62
R L+ + + ++++LLGHSFGG YP+++
Sbjct: 51 NPRRLDEIHTFRDYSEPLMEVMASIPPD---EKVVLLGHSFGGMSLGLAMETYPEKISVA 107
Query: 63 ILADPW----GFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+ + K P + NP P + Q++ KM
Sbjct: 108 VFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMF 167
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAH 178
+ + + K + + A Y
Sbjct: 168 QNCSVEDLELAK---------MLTRPGSLFFQDLAKAKKFSTERY-------------GS 205
Query: 179 VPVTVIYGSRSWVDNSSGDKIKEARSQNSFV------QVKSVTGAGHHVYADRAD 227
V I+ + DK Q FV +VK + A H +
Sbjct: 206 VKRAYIFCNE--------DKSFPVEFQKWFVESVGADKVKEIKEADHMGMLSQPR 252
>3d59_A Platelet-activating factor acetylhydrolase; secreted protein,
alpha/beta-hydrolase-fold, LDL-bound, lipoprotein
associated phospholipase A2, LP-PLA2; 1.50A {Homo
sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A*
Length = 383
Score = 37.2 bits (85), Expect = 0.006
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 12 DPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFP 71
P L +E+ + + +++ ++GHSFGG + R + I D W FP
Sbjct: 197 KPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQ-TLSEDQRFRCGIALDAWMFP 255
Query: 72 QKSIDPQKASKIP 84
+ + S+IP
Sbjct: 256 ---LGDEVYSRIP 265
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 36.9 bits (85), Expect = 0.007
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 1 FGRSSR-PRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRV 59
G R + D E +V + + + ++ + +LG S GG A A P R+
Sbjct: 190 QGEMFEYKRIAGDYEKYTSAVVDLLTK-LEAIRNDAIGVLGRSLGGNYALKSAACEP-RL 247
Query: 60 KHLILADPW 68
I +
Sbjct: 248 AACISWGGF 256
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 36.6 bits (84), Expect = 0.007
Identities = 37/285 (12%), Positives = 68/285 (23%), Gaps = 67/285 (23%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQ--YPDR 58
G + D + + I ++ + E+ L S G L F +
Sbjct: 82 SGPQDHAHDAEDVDDL-------IGILLRDHCMNEVALFATSTGTQLVFELLENSAHKSS 134
Query: 59 VKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+ +IL DP+ F P + + + E
Sbjct: 135 ITRVILHGVVC------DPE---------------NPLFTPEGCAARKEHVEKLMAEGRG 173
Query: 119 PDLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAF---------HTLTEGLGYAKRPML 169
D +LK IT P+ + A L +G K P+L
Sbjct: 174 EDSL----AMLKHYDIPITPARL-AGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLL 228
Query: 170 HRVDQLAAHVPVTVIYGSR-----SWVD-NSSGDKIKEARSQNSFVQVKSVTGAGH---H 220
++ S + + + +++ N V V
Sbjct: 229 -------------LMLAHNVQYKPSDEEVGTVLEGVRDHTGCNR-VTVSYFNDTCDELRR 274
Query: 221 VYADRADVFNKMVNDTCTLSDEKLDIVTTKAVKPPKEPQEPEEEV 265
V + DE E ++ + V
Sbjct: 275 VLKAAESEHVAAILQFLADEDEFRTETEKNNRIKAAEDEKKRKSV 319
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 36.6 bits (85), Expect = 0.008
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 38 LLGHSFGGYLAFAYAIQYPDR---VKHLILADPW 68
LLG+S GG LA A + R V L L D W
Sbjct: 170 LLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTW 203
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 36.1 bits (83), Expect = 0.009
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 3 RSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHL 62
+ + + L+ +++ + +E+IL+G SFGG A +P ++K L
Sbjct: 45 DPRPIQAVETVDEYSKPLIETLKSLPE---NEEVILVGFSFGGINIALAADIFPAKIKVL 101
Query: 63 ILAD 66
+ +
Sbjct: 102 VFLN 105
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A
{Bacillus subtilis} SCOP: c.69.1.22
Length = 230
Score = 35.9 bits (83), Expect = 0.009
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 37 ILLGHSFGGYLAFAYAIQYP---DRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNL 93
L G+S G LAF A + V+ +I+ D + Q D + ++
Sbjct: 74 TLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSY-KKQGVSDLDGRTVESDVEALMNVN 132
Query: 94 YKNFNPLWP 102
N
Sbjct: 133 RDNEALNSE 141
>3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG,
protein structure initiative, midwest center FO
structural genomics; 2.00A {Lactobacillus plantarum}
Length = 250
Score = 36.3 bits (83), Expect = 0.010
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 12 DPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD-----RVKHLI-LA 65
+ + L T+ + K LGHS GG + + +Y + L+ +A
Sbjct: 76 NIDKQAVWLNTAFKALVKTYHFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIA 135
Query: 66 DPWGFPQKSIDPQ 78
P+ S +
Sbjct: 136 SPYNMESTSTTAK 148
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 35.6 bits (82), Expect = 0.012
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 12 DPETVER---QLVTSIEEWRKELKLQE--MILLGHSFGGYLAFAYAIQYPDRVKHLILAD 66
D E + +L ++E KE K ++ +G+S G +A + Y + +K +L
Sbjct: 92 DEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHH 151
Query: 67 PWGFPQKSIDPQKASKIPLW 86
P P++ + + ++
Sbjct: 152 PM-VPRRGMQLANLAGKSVF 170
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 36.0 bits (82), Expect = 0.013
Identities = 29/219 (13%), Positives = 56/219 (25%), Gaps = 20/219 (9%)
Query: 11 TDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQY---PDRVKHLI-LAD 66
T + T I++ + ++ ++ HS G ++ +QY V+ I LA
Sbjct: 105 YHSSTKYAIIKTFIDKVKAYTGKSQVDIVAHSMGVSMS-LATLQYYNNWTSVRKFINLAG 163
Query: 67 PW-------GFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMRP 119
+ + + + V P
Sbjct: 164 GIRGLYSCYYTGYANAAAPTCGSQNYYNSYTFGFFPE-GWYYGVWVSNPWTGSGSTNSMR 222
Query: 120 DLPKKFTPVLKEDSSAITEYIFQCNVQAPSGESAFHTLTEGLGYAKRPMLHRVDQLAAHV 179
D+P K T V S T + + S + +A + Q+
Sbjct: 223 DMPAKRTAV-----SFYTLSAGFKDQVGCATASFWAGCDSAAKFAST-TSNVKAQINVGA 276
Query: 180 PVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAG 218
W D + + N ++ T G
Sbjct: 277 GSNATQADYDWADGMPYN-AGGGDTTNGVGHFRTKTNTG 314
>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide
synthase, thioesterase, 6-DEB, TE, DEBS, alpha,
beta-hydrolase; 2.80A {Saccharopolyspora erythraea}
SCOP: c.69.1.22 PDB: 1mo2_A
Length = 300
Score = 35.6 bits (82), Expect = 0.018
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 2 GRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR--- 58
G + V ++ + + ++ GHS G +A+A A + DR
Sbjct: 105 GYEEGEPLPSSMAAVAAVQADAVIRTQGDKPF---VVAGHSAGALMAYALATELLDRGHP 161
Query: 59 VKHLILADPW 68
+ ++L D +
Sbjct: 162 PRGVVLIDVY 171
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis,
alpha/beta- hydrolases, catalytic triade, hydrolase;
1.8A {Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 35.2 bits (81), Expect = 0.018
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 38 LLGHSFGGYLAFAYAIQYP---DRVKHLILADPWGFPQKSIDPQKASKIPLWAR 88
LLG+S GG LAF V I+ D + Q + +
Sbjct: 81 LLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTENDDSAAYLP 134
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase,
polyketide synthase, phosphopantetheine, transferase,
hydrolase; 2.00A {Streptomyces SP}
Length = 319
Score = 35.6 bits (82), Expect = 0.018
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 38 LLGHSFGGYLAFAYAIQYPDR---VKHLILADPWGFPQKSIDPQKASKIPLWARMI 90
L GHS GG +A+ A + R + ++L D + F P++ + L R +
Sbjct: 152 LAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFV 207
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610,
O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A
{Bacillus anthracis str}
Length = 377
Score = 35.7 bits (83), Expect = 0.019
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 39 LGHSFGGYLAFAYAIQYPDRVKHLIL 64
+G S GG +A +A+ YP V+ +I
Sbjct: 152 MGPSAGGMIAQQWAVHYPHMVERMIG 177
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa
transferase; 2.20A {Leptospira interrogans} SCOP:
c.69.1.40
Length = 366
Score = 35.3 bits (82), Expect = 0.022
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLIL 64
+ G S GG A ++I YP+ + + I+
Sbjct: 149 VAGGSMGGMQALEWSIAYPNSLSNCIV 175
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 34.5 bits (79), Expect = 0.024
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
D ++L+ ++ + +L G S G Y+A ++Q P +
Sbjct: 44 LDARRDLGQLGDVRGRLQRLLEIARAATEKGPV---VLAGSSLGSYIAAQVSLQVP--TR 98
Query: 61 HLILADPW 68
L L P
Sbjct: 99 ALFLMVPP 106
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 34.3 bits (78), Expect = 0.026
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 23 SIEEWRKELKLQ-----EMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDP 77
W ++ + + I++GHS G A YA + V ++L + +
Sbjct: 51 RESIWLPFMETELHCDEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDENE 108
Query: 78 QKASKIPLW 86
+ +
Sbjct: 109 RASGYFTRP 117
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 34.6 bits (79), Expect = 0.028
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFP 71
+ + R+ T + +L + GHS GG + RV+ P+
Sbjct: 98 DYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG 153
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 34.4 bits (79), Expect = 0.030
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 1 FGRSSRPRFSTDPETVER---QLVTSIEEWRKELKL--QEMILLGHSFGGYLAFAYAIQY 55
G + + D E+++ L + ++ L +MI +G+S G +A ++
Sbjct: 64 RGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRG 123
Query: 56 PDRVKHLILADPWGFPQKSIDPQKASKIPLW 86
+I + + ++
Sbjct: 124 KINFDKIIAFHGM-QLEDFEQTVQLDDKHVF 153
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 34.5 bits (79), Expect = 0.036
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80
+ GHS GG+ A A++ P+R + + P P QKA
Sbjct: 145 IAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNCPWGQKA 187
>3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase,
thioesterase, norsolorinic acid, P polyketide,
acyltransferase; 1.70A {Aspergillus parasiticus}
Length = 265
Score = 34.4 bits (79), Expect = 0.037
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 37 ILLGHSFGGYLAFAYAIQ---YPDRVKHLILADPW 68
L G S GG A+ A + V LI+ D
Sbjct: 88 HLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAP 122
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus} SCOP: c.69.1.39
Length = 131
Score = 33.1 bits (75), Expect = 0.041
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYA 52
+GR+ PR + + +L + + + L +L G L
Sbjct: 53 YGRTEGPRMAPE------ELAHFVAGFAVMMNLGAPWVLLRGLGLALGPHLE 98
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 34.2 bits (78), Expect = 0.049
Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 7/126 (5%)
Query: 3 RSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHL 62
+ L+ +E + +++IL+GHS GG +YP ++
Sbjct: 45 DLRKIEELRTLYDYTLPLMELMESLSAD---EKVILVGHSLGGMNLGLAMEKYPQKIYAA 101
Query: 63 ILADPW----GFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKMR 118
+ + + Q + P + +P P+ + +++ K+
Sbjct: 102 VFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPKFLAHKLY 161
Query: 119 PDLPKK 124
+
Sbjct: 162 QLCSPE 167
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 33.8 bits (78), Expect = 0.053
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 231 KMVNDTCTLSDEKLDIVTTKAVKPPK-----EPQEPEEEVKEEEERKKEEEKKKEEDGQH 285
D LS EK++I T + +E E+ +K+ EE + + E++K+E Q
Sbjct: 198 NKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQK 257
Query: 286 QQDK 289
++DK
Sbjct: 258 EKDK 261
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 33.5 bits (77), Expect = 0.057
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 12/76 (15%)
Query: 227 DVFNKMVNDTCTLSDEKLD------------IVTTKAVKPPKEPQEPEEEVKEEEERKKE 274
DV + D T D KL +V+ + E E E + +
Sbjct: 137 DVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPRLTAEELEAEVQAAQVAGLVAA 196
Query: 275 EEKKKEEDGQHQQDKA 290
E +E + A
Sbjct: 197 GELSEEAAEAVLEGDA 212
Score = 28.2 bits (63), Expect = 3.9
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 257 EPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDK 289
E E E E + EE K + + D
Sbjct: 198 ELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
Score = 27.0 bits (60), Expect = 8.2
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 257 EPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDK 289
E + EE + + E D + D
Sbjct: 204 AEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 33.4 bits (76), Expect = 0.080
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 9 FSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILAD-- 66
FS + + + S+ K +IL+GH+ GG +P+++ +
Sbjct: 63 FSDYLSPL-MEFMASLPANEK------IILVGHALGGLAISKAMETFPEKISVAVFLSGL 115
Query: 67 --PWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQW 112
++ + S + GP
Sbjct: 116 MPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLA 163
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 33.1 bits (76), Expect = 0.081
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 227 DVFNKMVNDTCTLSDEKLD------------IVTTKAVKPPKEPQEPEEEVKEEEERKKE 274
DV + D+ SD KL I P + EE E E +
Sbjct: 140 DVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVP--PEDVEKLAEEAAAEVAEPEVI 197
Query: 275 EEKKKEED 282
++ K+EE+
Sbjct: 198 KKGKEEEE 205
>3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A
{Pseudoalteromonas haloplanktis}
Length = 280
Score = 33.0 bits (75), Expect = 0.094
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80
+ GHS GG+ A A++ P P P KA
Sbjct: 143 ISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCPWGVKA 185
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 33.2 bits (75), Expect = 0.11
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 7 PRFST-DPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD---RVKHL 62
P F D + +V +I ++ +L S GG +A +P +V L
Sbjct: 103 PPFMLNDTQVNTEYMVNAITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRL 162
Query: 63 I-LADPWG 69
+ A +
Sbjct: 163 MAFAPDYK 170
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 33.1 bits (75), Expect = 0.12
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 37 ILLGHSFGGYLAFAYAIQYPDRVKHLILADP-WGFPQKSIDPQKASKIPLWARMIGNLY 94
+L+GHSFGG +A + D F ++ L+
Sbjct: 140 VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFDSPHYLTLLEERVVKGDFKQKQLF 198
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 32.5 bits (73), Expect = 0.17
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 12 DPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPD---RVKHLI-LADP 67
D + +V +I ++ +L S GG +A +P +V L+ A
Sbjct: 75 DTQVNTEYMVNAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPD 134
Query: 68 WG 69
+
Sbjct: 135 YK 136
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 32.6 bits (75), Expect = 0.19
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 38 LLGHSFGGYLAFAYAIQYPDR---VKHLILADPW 68
L G+S G LAF A + ++ V+ +I+ D +
Sbjct: 1116 LFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSY 1149
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP:
c.69.1.16
Length = 262
Score = 31.9 bits (72), Expect = 0.21
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 21 VTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQ 72
+T R + + ++GHS GG + A +K I W +
Sbjct: 110 LTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTDK 160
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 31.7 bits (72), Expect = 0.24
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 40 GHSFGGYLAFAYAIQYPDRVKHLIL--ADPWGFPQKSIDPQKASK 82
G S GG +F + D+ ++ A P +P + + P
Sbjct: 151 GLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGGKA 195
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 31.9 bits (72), Expect = 0.29
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 37 ILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
++ G SFGG A + +P+R ++
Sbjct: 279 VVAGQSFGGLSALYAGLHWPERFGCVLSQSG 309
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 31.8 bits (72), Expect = 0.31
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 38 LLGHSFGGYLAFAYAIQ 54
+ G+S+G +AF Q
Sbjct: 109 VAGYSYGACVAFEMCSQ 125
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 31.7 bits (72), Expect = 0.32
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 36 MILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYK 95
+ ++G S GG L+ A A P RV+ ++ P+ K + +K I + ++
Sbjct: 202 VGVMGPSQGGGLSLACAALEP-RVRKVVSEYPFLSDYKRVWDLDLAKNAYQE--ITDYFR 258
Query: 96 NFNPLWPVRFVGPLGQWVVEKMRPDLPKKF-----TPVL 129
F+P V K+ K VL
Sbjct: 259 LFDPRHERE------NEVFTKLGYIDVKNLAKRIKGDVL 291
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 32.2 bits (73), Expect = 0.33
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 37 ILLGHSFGGYLAFAYAIQ------YPDRVKHLILADPW 68
+ G+S+G +AF Q L L D
Sbjct: 2304 RIAGYSYGACVAFEMCSQLQAQQSATPGNHSLFLFDGS 2341
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for
structural genomics; 1.8A {Bacillus subtilis} SCOP:
c.69.1.31
Length = 192
Score = 31.3 bits (70), Expect = 0.33
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 23 SIEEWRKELKLQ------EMILLGHSFGGYLAFAYAIQYP--DRVKHLILADPWGFPQKS 74
+E+W L L L+ HS G + + +IL + +
Sbjct: 48 RLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT 107
Query: 75 IDPQKASKIPLWARM 89
+ +
Sbjct: 108 LQMLDEFTQGSFDHQ 122
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 31.4 bits (71), Expect = 0.33
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 37 ILLGHSFGGYLAFAYAIQ 54
+ G+S+G +AF Q
Sbjct: 86 RVAGYSYGACVAFEMCSQ 103
>3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family,
catalytic triad, kinetics, proposed reaction mechanism;
HET: MSE; 2.01A {Agrobacterium tumefaciens}
Length = 278
Score = 31.5 bits (71), Expect = 0.34
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80
+ GHS GG+ A A++ P+R K P P + + A
Sbjct: 144 IFGHSMGGHGAMTIALKNPERFKSCSAFAPIVAPSSADWSEPA 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 31.8 bits (71), Expect = 0.35
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 242 EKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQ 287
E+L K + E +E E ++ +E Q Q
Sbjct: 302 ERLKRGGRKVENEDMNKDQILLE--KEAELRRMQEMIARMQAQMQM 345
Score = 28.3 bits (62), Expect = 4.4
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 257 EPQEPEEEVKEEEERKKEEEKKKEEDG 283
E + +E + + + + + + + DG
Sbjct: 328 ELRRMQEMIARMQAQMQMQMQGGDGDG 354
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 31.4 bits (70), Expect = 0.36
Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 225 RADVFNKMVNDTCTLSDEKLDIVTTKAVKPPKEP-----QEPEEEVKEEEERKKEEEKKK 279
+ ++D L +E + A + P + ++ ++ + +++
Sbjct: 277 QVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDD 336
Query: 280 EEDG 283
+ED
Sbjct: 337 DEDA 340
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 31.7 bits (71), Expect = 0.36
Identities = 15/92 (16%), Positives = 28/92 (30%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNF 97
LLG S G + + A + + + +I+ + +S PL +
Sbjct: 229 LLGISLGADICLSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFS 288
Query: 98 NPLWPVRFVGPLGQWVVEKMRPDLPKKFTPVL 129
+ V L + K P+L
Sbjct: 289 GLVDIVDIRNALVGGYKNPSMIPIEKAQGPIL 320
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 31.3 bits (70), Expect = 0.43
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKIPLWARM 89
LLG S GG L + A +++ ++ + + P+
Sbjct: 245 LLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNR 296
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 30.8 bits (69), Expect = 0.49
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQ 72
++GHS GG A Q P +K I PW +
Sbjct: 171 VMGHSMGGGGTLRLASQRP-DLKAAIPLTPWHLNK 204
>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive
mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP:
c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*
Length = 297
Score = 30.8 bits (69), Expect = 0.61
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 8 RFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLI 63
++ST E+ Q + + R G + GG + + D V + +
Sbjct: 140 KYSTYAESTTPQGIAASRMHR--------GFGGFAMGGLTTWYVMVNCLDYVAYFM 187
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; 2.70A {Mycobacterium tuberculosis}
SCOP: c.69.1.3
Length = 304
Score = 30.6 bits (69), Expect = 0.62
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 40 GHSFGGYLAFAYAIQYPDR 58
G S A AI +P +
Sbjct: 125 GLSMAASSALTLAIYHPQQ 143
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural
genom consortium, NESG, alpha-beta protein, rossmann
fold, HY; 2.10A {Yersinia enterocolitica subsp}
Length = 202
Score = 30.1 bits (67), Expect = 0.70
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 7 PRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYP-DRVKHLILA 65
P+ P L + + + Q + ++G S GGY A + ++ V
Sbjct: 39 PQLPPYPAEAAEMLESIVMDKAG----QSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAV 94
Query: 66 DPWGFPQKSIDPQK 79
P+ + +
Sbjct: 95 RPFELLSDYLGENQ 108
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 30.1 bits (68), Expect = 0.72
Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 24/145 (16%)
Query: 2 GRSSRPR-FSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYA---IQYPD 57
G + D E + + + +L GHS GG + F A +
Sbjct: 49 GHGTNQTSAIEDLEELTDLYKQELNLRP----DRPFVLFGHSMGGMITFRLAQKLEREGI 104
Query: 58 RVKHLILADPWGFPQKSIDPQKASKIPLWARMIGNLYKNFNPLWPVRFVGPLGQWVVEKM 117
+ +I++ + + + G
Sbjct: 105 FPQAVIISAIQPPHIQRKKVSHLPDDQFLDHI----------------IQLGGMPAELVE 148
Query: 118 RPDLPKKFTPVLKEDSSAITEYIFQ 142
++ F P + D A+ ++
Sbjct: 149 NKEVMSFFLPSFRSDYRALEQFELY 173
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium; 1.50A {Mycobacterium tuberculosis} SCOP:
c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Length = 280
Score = 30.6 bits (69), Expect = 0.72
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 40 GHSFGGYLAFAYAIQYPDR 58
G S G A A YP +
Sbjct: 120 GLSMSGGSALILAAYYPQQ 138
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase
inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus
aureus}
Length = 329
Score = 30.6 bits (68), Expect = 0.73
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 220 HVYADRADVFNKMVNDTCTLSDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKK 279
H Y + ++ F +V +T + TK VK E + VKEE K E+ +
Sbjct: 246 HHYKNHSEGFEALVKETREAVANADESWKTKTVKKYGESETKSPVVKEEN--KVEDPQSP 303
Query: 280 EEDGQHQQDKARS 292
+ D Q +
Sbjct: 304 KFDNQQEVKTTAG 316
>3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma,
genetic marker, cytoplasm, cytoplasmic vesicle,
polymorphism, serine esterase; 1.50A {Homo sapiens}
Length = 282
Score = 30.3 bits (68), Expect = 0.80
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 38 LLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKA 80
+ GHS GG+ A A++ P + K + P P +KA
Sbjct: 145 IFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCPWGKKA 187
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 30.7 bits (68), Expect = 0.87
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 253 KPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKARSVT 294
E E K EE+ + + + + + DK
Sbjct: 82 AATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAK 123
Score = 29.2 bits (64), Expect = 2.5
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 248 TTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKARS 292
K + +PE + +E + E K E++ Q K
Sbjct: 111 EAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTE 155
Score = 28.0 bits (61), Expect = 5.5
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 240 SDEKLDIVTTKAVKPPKEPQ-EPEEEVKEEEERKKEEEKKKEEDGQHQQDKARSVTFM 296
+EK V + +P+ + E E K E + +E K E + +++ V
Sbjct: 96 PEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKN 153
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A
{Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A*
3tgl_A
Length = 269
Score = 30.3 bits (68), Expect = 0.90
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADP 67
V+ +LV ++ + K+ ++ + GHS GG A A+ R + L ++
Sbjct: 116 GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNL 169
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 29.7 bits (66), Expect = 0.99
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQE---MILLGHSFGGYLAFAYAIQYPD 57
S PR+ + V +E + + + L G S G ++A +
Sbjct: 69 PPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR 128
Query: 58 RVKHLIL---ADPWGFPQKSIDPQKA 80
L P PQ +
Sbjct: 129 PRGVLAFIGSGFPMKLPQGQVVEDPG 154
>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A
{Streptomyces coelicolor} PDB: 3qmw_A*
Length = 280
Score = 30.0 bits (67), Expect = 1.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 2 GRSSRPR--FSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYA 52
GR R R E + + ++EE R + L GHS G LA+ A
Sbjct: 87 GRGLRLRERPYDTMEPLAEAVADALEEHRLT---HDYALFGHSMGALLAYEVA 136
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 29.1 bits (64), Expect = 1.0
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 253 KPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKAR 291
+ ++ +E+ E+++ +E++++EE+ Q + R
Sbjct: 43 EEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLR 81
Score = 29.1 bits (64), Expect = 1.3
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 240 SDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEED 282
++ + + ++ E E+E ++++ + EEE+++ D
Sbjct: 33 EEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
Score = 27.6 bits (60), Expect = 4.1
Identities = 8/47 (17%), Positives = 27/47 (57%)
Query: 241 DEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQ 287
D+ + KA + ++ +E +E ++E+E + +++ E++ + ++
Sbjct: 26 DDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 26.4 bits (57), Expect = 9.3
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 240 SDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQD 288
D + + +E E+E ++E+E +++ + EE+ + D
Sbjct: 27 DDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 29.7 bits (67), Expect = 1.1
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 11/82 (13%)
Query: 36 MILLGHSFGGYLAFAYAIQYPDRVKHLILADP----WGFPQKSIDPQKASKIPLWARMIG 91
+ + G S GG L A D K + P + Q +I + R G
Sbjct: 175 IGVTGGSQGGGLT-IAAAALSDIPKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNG 233
Query: 92 ---NLYKNFNPLW---PVRFVG 107
+ L +
Sbjct: 234 SPETEVQAMKTLSYFDIMNLAD 255
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune
system; 1.71A {Mycobacterium tuberculosis} SCOP:
c.69.1.3
Length = 280
Score = 29.9 bits (67), Expect = 1.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 40 GHSFGGYLAFAYAIQYPDR 58
G + GGY A A A +PDR
Sbjct: 118 GAAQGGYGAMALAAFHPDR 136
>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST
initiative, midwest center for structural genomics,
MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}
Length = 275
Score = 29.5 bits (66), Expect = 1.3
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 37 ILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASK 82
L GH GG A + ++ ++ P + +K
Sbjct: 155 TLFGHXLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEEN 200
>1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A
{Rhizopus niveus} SCOP: c.69.1.17 PDB: 1tic_A
Length = 269
Score = 29.5 bits (66), Expect = 1.3
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPW 68
E V ++E ++I+ GHS GG A + R L +
Sbjct: 117 EQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLS 171
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 29.5 bits (65), Expect = 1.5
Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 7/90 (7%)
Query: 2 GRSSRPRFSTDPETVERQLV---TSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
G + PR + + +++ E + G S G + R
Sbjct: 113 GLDAFPRMWHEGGGTAAVIADWAAALDFIEAEEGPRPTGWWGLSMGTMMGLPVTASDK-R 171
Query: 59 VKHLILADPWG---FPQKSIDPQKASKIPL 85
+K +L + + P+
Sbjct: 172 IKVALLGLMGVEGVNGEDLVRLAPQVTCPV 201
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 29.7 bits (66), Expect = 1.5
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVK 60
G++ + + R +++I +W + +++ + G S GGY + R+K
Sbjct: 198 QGKNPNQGLHFEVDA--RAAISAILDW-YQAPTEKIAIAGFSGGGYFTAQAVEKDK-RIK 253
Query: 61 HLILADPW 68
I + P
Sbjct: 254 AWIASTPI 261
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 28.8 bits (65), Expect = 1.9
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 257 EPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKARSVTFMTLGIV 301
+ + + EE E Q ++ + TF LG+
Sbjct: 7 HSSGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVT 51
>2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular
permutation, hydrolase; HET: NAG RB3; 1.66A
{Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A*
Length = 318
Score = 29.0 bits (64), Expect = 2.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 40 GHSFGGYLAFAYAIQYPDRVK 60
G + GGY+A + Y D
Sbjct: 17 GLASGGYMAAQLGVAYSDVFN 37
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 29.4 bits (66), Expect = 2.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 40 GHSFGGYLAFAYAIQYPDR 58
G+S+GGY+ P
Sbjct: 443 GYSYGGYMTLCALTMKPGL 461
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.9 bits (64), Expect = 2.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 242 EKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEED 282
KL+ + K P +P +E + + E +KKEE+
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEE 341
>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium
camemberti} SCOP: c.69.1.17
Length = 279
Score = 28.7 bits (64), Expect = 2.4
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDR 58
+ V ++ ++E + E++++GHS G +A A +
Sbjct: 117 KLVRDDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAATDLRGK 161
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Length = 106
Score = 27.2 bits (60), Expect = 3.0
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 211 VKSVTGA-GHHVYADRADVF-----NKMVNDTCTLSDEKLDIVTTKAVKPPKEPQEPEEE 264
+K++ + G + ++ K V++ T +EKL V +
Sbjct: 22 IKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEKLAAVPAAGPASAGGAAAASGD 81
Query: 265 VKEEEERKKEEEKKKEED 282
EEE+++E ++ ++D
Sbjct: 82 AAAEEEKEEEAAEESDDD 99
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.3 bits (62), Expect = 3.1
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 254 PPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQD 288
+ QEPE K EE++K ++ +Q+
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE 126
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 28.6 bits (63), Expect = 3.3
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 256 KEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKARS 292
E Q E+E + ER+K ++ + E + + + +
Sbjct: 675 HEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA 711
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_C
Length = 243
Score = 28.1 bits (63), Expect = 3.8
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 245 DIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEK 277
D V K + +E V++++ + E+++
Sbjct: 211 DNVIIHPPKQITDDKEIRTAVEQQQPAQPEQQQ 243
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 28.3 bits (63), Expect = 3.8
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 256 KEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKARS 292
+E + ++ +EEE R + E + KE+ + ++ +
Sbjct: 393 QENENMRKKKEEEERRARMEAQLKEQRERERKMRKAK 429
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 28.1 bits (63), Expect = 3.8
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 167 PMLHRVDQLAAHVPVTVIYGSRSWVDNSSGDKIKEARSQNSFVQVKSVTGAGHHVYADRA 226
ML + + V + + + ++ D++KE H Y +
Sbjct: 276 AMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTA-------HTWYRQPS 328
Query: 227 D 227
+
Sbjct: 329 E 329
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 26.8 bits (59), Expect = 3.9
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 2 GRSSRPRFS-TDPETVERQLVTSIEEWRKELKLQE 35
SSRP + DP + E V S+ +W + +K+
Sbjct: 6 SESSRPNTALLDPSSPEFSAVVSVGDWLQAIKMDR 40
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 28.2 bits (62), Expect = 4.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 262 EEEVKEEEERKKEEEKKKEEDGQHQQDKARSVTF 295
++E E E KK++DG + +++S+ F
Sbjct: 15 KKEFAAYTAALAEAESKKKQDGYLSEPRSQSLNF 48
>3uue_A LIP1, secretory lipase (family 3); LID-domain, hydrolase; HET: NAG
BMA MAN; 1.45A {Malassezia globosa} PDB: 3uuf_A*
Length = 279
Score = 28.0 bits (62), Expect = 4.2
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAI 53
+ + T++++++KE + + ++GHS G + A+
Sbjct: 118 NDLMDDIFTAVKKYKKEKNEKRVTVIGHSLGAAMGLLCAM 157
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 28.1 bits (62), Expect = 4.3
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 31 LKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQ 78
++ L+GHS G ++A A + + DP + +
Sbjct: 143 YSPSQVQLIGHSLGAHVA-GEAGSRTPGLGRITGLDPVEASFQGTPEE 189
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 27.9 bits (62), Expect = 4.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 250 KAVKPPKEPQEPEEEVKEEEERKKEEEKKKEE 281
+AV PQ+ E ++EE+ + ++ K+++E
Sbjct: 322 QAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces
lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A
1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Length = 269
Score = 27.9 bits (62), Expect = 4.4
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLIL 64
+V L +E+ +E ++ GHS GG LA + +
Sbjct: 118 RSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDV 168
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 27.9 bits (63), Expect = 4.9
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 246 IVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKARSVT 294
I + E EEE +EE+ ++E EE+ + ++ K + V
Sbjct: 211 IYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 26.5 bits (58), Expect = 5.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 254 PPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKARSVTF 295
PK+ + P K + +++KKK G+ ++ SV F
Sbjct: 2 APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSVLF 43
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 27.7 bits (62), Expect = 5.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 40 GHSFGGYLAFAYAIQYPD 57
G S+GG++ + + D
Sbjct: 575 GWSYGGFMTTNLMLTHGD 592
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 27.8 bits (62), Expect = 5.9
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 40 GHSFGGYLAFAYAIQYPD 57
G S GGY+ + D
Sbjct: 608 GWSNGGYMTLMLLAKASD 625
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 27.6 bits (61), Expect = 5.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 250 KAVKPPKEPQEPEEEVKEEEERKKEEEKKKEE 281
+AV PQ+ E ++EE+ + ++ K+++E
Sbjct: 491 QAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 27.3 bits (61), Expect = 6.2
Identities = 6/64 (9%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 231 KMVNDTCTLSDEKLDI-VTTKAVKPPKEPQEPEEEVKEEE---ERKKEEEKKKEEDGQHQ 286
+ ++ D +L+I + + + ++E +++ + ++ED
Sbjct: 201 YLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDN 260
Query: 287 QDKA 290
+
Sbjct: 261 VMSS 264
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 27.8 bits (61), Expect = 6.6
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 230 NKMVNDTCTLSDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDK 289
+M+ND L DE + + E + + ++EE+K+ + +
Sbjct: 685 ARMLNDLTFLLDE----GLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQ 740
Query: 290 ARSVTFMTLGIVMVSMMILMT 310
A+S L + + + +
Sbjct: 741 AKS--SCGLADKSMKLFEIYS 759
>1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation;
HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17
PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A*
Length = 261
Score = 27.2 bits (60), Expect = 6.8
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLIL 64
+V+ Q+ + +++ + + + GHS G +A A Q ++ L
Sbjct: 105 ISVQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRL 155
>3o0d_A YALI0A20350P, triacylglycerol lipase; alpha/beta-hydrolase, lipids
binding, glycosylation, extracellular, hydrolase; HET:
NAG; 1.70A {Yarrowia lipolytica}
Length = 301
Score = 27.3 bits (60), Expect = 6.8
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAIQYPDRVKHLIL 64
Q+ ++ ++ ++ + GHS GG A + I ++
Sbjct: 134 NNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLV 184
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 27.2 bits (60), Expect = 6.8
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 256 KEPQEPEEEVKEEEERKKEEEKKKEEDGQHQQDKA 290
++P+E E++V EE ++ E++ +E+ +Q +A
Sbjct: 205 RDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEA 239
>3g7n_A Lipase; hydrolase fold, hydrolase; HET: 1PE; 1.30A {Penicillium
expansum}
Length = 258
Score = 27.1 bits (60), Expect = 6.8
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 14 ETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYAI 53
V ++T ++ + + +GHS GG L +
Sbjct: 104 SAVHDTIITEVKALIAKYPDYTLEAVGHSLGGALTSIAHV 143
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 27.3 bits (61), Expect = 7.2
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 231 KMVNDTCTLSDEKLDIVTTKAVKPPK---EPQEPEEEVKEEEERKKEEEKKKEED 282
+V+D +L++ + + P++ EE ++ + +EE + ++D
Sbjct: 198 YIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDD 252
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 27.3 bits (60), Expect = 7.5
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 238 TLSDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEED 282
L + + T K + EEE +++
Sbjct: 425 PLDETEPPRFLTNY---TKAKSQISFYFNNEEEDNNKKKSSPATK 466
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 27.3 bits (60), Expect = 7.5
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 250 KAVKPPKEPQEPEEEVKEEEER-KKEEEKKKEEDGQHQQD 288
+ P +E VKE ++ K E ++ + +
Sbjct: 221 LIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEAN 260
>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene
family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A
3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A*
2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A*
2gst_A* ...
Length = 218
Score = 27.1 bits (60), Expect = 7.6
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 111 QWVVEKMRPDLPKKFTPVLKED------SSAITEYI 140
QW+ EK + L P L + S+AI YI
Sbjct: 45 QWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRYI 80
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A
{Amycolatopsis mediterranei} PDB: 3flb_A*
Length = 267
Score = 27.2 bits (60), Expect = 7.8
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 2 GRSSRPR--FSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLAFAYA 52
GR R + +L+ + + + + L GHS G + + A
Sbjct: 56 GRQDRRHEPPVDSIGGLTNRLLEVLRPFG----DRPLALFGHSMGAIIGYELA 104
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 27.0 bits (59), Expect = 8.5
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 238 TLSDEKLDIVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKE 280
T + + + K ++ ++ ++EE+R K E
Sbjct: 289 TNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 26.8 bits (60), Expect = 8.7
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 231 KMVNDTCTLSDEKLDIVTTKAVKPPK--EPQEPEEEVKEEEERKKEEEKKKEE 281
K + + + +++ + + K P+E E+ V E E+ K+E EKKK++
Sbjct: 193 KALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQK 245
>2ory_A Lipase; alpha/beta hydrolase, hydrolase; 2.20A {Photobacterium SP}
Length = 346
Score = 27.1 bits (59), Expect = 8.7
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 1 FGRSSRPRFSTDPETVERQLVTSIEEWRKELKLQEMILLGHSFGGYLA--FAYAIQY 55
+ + + + ++ + E ++ + GHS GG L+ A ++
Sbjct: 133 LKTLQKLKPKSHIPGENKTILQFLNEKIGPEGKAKICVTGHSKGGALSSTLALWLKD 189
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 26.9 bits (60), Expect = 9.0
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 246 IVTTKAVKPPKEPQEPEEEVKEEEERKKEEEKKKEEDG 283
+ K P E + +E+++E+ ++E+EKKK E+
Sbjct: 166 VEEIIVFKNPFE--DARKEMEDEKREEEEKEKKKLENA 201
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 27.1 bits (60), Expect = 9.0
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 36 MILLGHSFGGYLAFAYAIQYPDRVK 60
+ + G S GG+ A + ++ D
Sbjct: 505 LAVRGGSAGGWTAAS-SLVSTDVYA 528
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative
splicing, coiled coil, DNA damage, DNA recombination,
isopeptide bond, nucleus; HET: DNA; 2.40A {Homo
sapiens} PDB: 2e2w_A*
Length = 263
Score = 26.8 bits (58), Expect = 9.9
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 33 LQEMILLGHSFGGYLAFAYAIQYPDRVKHLILADPWGFPQKSIDPQKASKI--PLW 86
L+ I FGGY+ +Q P + ++A K+I + P W
Sbjct: 30 LENRI---AEFGGYI-----VQNPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAW 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,151,687
Number of extensions: 302955
Number of successful extensions: 1689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 267
Length of query: 335
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 241
Effective length of database: 4,077,219
Effective search space: 982609779
Effective search space used: 982609779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)