Query psy17712
Match_columns 293
No_of_seqs 145 out of 1723
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 21:05:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.2E-58 4.3E-63 393.8 21.9 277 7-291 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 4E-57 1.4E-61 383.7 22.7 275 5-289 7-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.6E-36 5.5E-41 257.1 17.5 190 99-291 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 7.8E-37 2.7E-41 259.6 10.4 184 4-190 103-288 (303)
5 2acm_A Mucin-1; auto-catalytic 23.4 14 0.00047 21.9 -0.4 20 44-63 40-59 (66)
6 3tgu_G UQCRQ, mitochondrial ub 23.3 40 0.0014 21.5 1.7 35 257-291 34-68 (81)
7 3cx5_H Cytochrome B-C1 complex 15.7 1.1E+02 0.0036 20.2 2.5 37 255-291 42-78 (93)
8 1pp9_G Ubiquinol-cytochrome C 14.1 73 0.0025 20.3 1.4 36 256-291 33-68 (81)
9 4b19_A PEPA1; toxin, toxin apo 14.0 31 0.0011 17.3 -0.3 21 206-226 5-25 (30)
10 3vjj_A P9-1; 3.00A {Rice black 12.0 1.1E+02 0.0036 24.7 2.0 35 217-257 274-308 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-58 Score=393.80 Aligned_cols=277 Identities=27% Similarity=0.415 Sum_probs=251.7
Q ss_pred HHHHHHhHHHHhhhhhcCchhhhhhhhccCCCC--------CCCCCChHHHHHHHHHhhccchhcccccccccchhHHHH
Q psy17712 7 KYFFAGGVGGILTVLVGHPFDTVKVRLQTMSTE--------KPQYKGTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFA 78 (293)
Q Consensus 7 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~--------~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 78 (293)
.++++|++|++++.+++||+|++|+|+|++... ...|++..+.+++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 478999999999999999999999999998742 346899999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhhhcccCCCccchHHHHHHhhhhhhhhhhhcchhhHHHHHHhhcccc-CCcccCCHHHHHHHHHHhhccc
Q psy17712 79 LSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNE-TAKVYSGPVDVVRKLVRQHGVT 157 (293)
Q Consensus 79 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~i~~~~G~~ 157 (293)
++|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|++|+|+|++... ....|++.++++++++++||++
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 999999999998865422 35677889999999999999999999999999998642 3457899999999999999999
Q ss_pred hhccchhhHHhhhcccchhHHHHHHHHHHHhhcCCCCCCCCCccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHhhCCC
Q psy17712 158 SVFKGLCATLLRDIPANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRLQTAPE 237 (293)
Q Consensus 158 gly~G~~~~~l~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~is~P~d~i~~r~q~~~~ 237 (293)
|||||+.|.+++.+|+.+++|.+||.+++.+.+.. ....+....+++|++||++++++++|+|+||+|||.+..
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999886532 223456678999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhhCccccccchhhhhhhhhcchhhHHHHHHHHHHHhhh
Q psy17712 238 GTYPNGVRSVLSTTLRNEGPGALYKGAIPVFLRAFPANAACFLGVEYTLSLLNK 291 (293)
Q Consensus 238 ~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (293)
..| .++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+
T Consensus 236 ~~y-~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 236 GQY-HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SSC-CSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ccc-CCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 778 89999999999999999999999999999999999999999999987653
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4e-57 Score=383.69 Aligned_cols=275 Identities=22% Similarity=0.367 Sum_probs=239.1
Q ss_pred hhHHHHHHhHHHHhhhhhcCchhhhhhhhccCCC-----CCCCCCChHHHHHHHHHhhccchhcccccccccchhHHHHH
Q psy17712 5 PVKYFFAGGVGGILTVLVGHPFDTVKVRLQTMST-----EKPQYKGTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFAL 79 (293)
Q Consensus 5 ~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~-----~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 79 (293)
...++++|++|++++.++++|+|++|+|+|++.. ....|++..+.+++++++||++|||||+.+++++.++.+++
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999763 12468999999999999999999999999999999999999
Q ss_pred HHHhhHHHHhhhcccCC-C-c--cchHHHHHHhhhhhhhhhhhcchhhHHHHHHhhcccc--CCcccCCHHHHHHHHHHh
Q psy17712 80 SFLGYGAGKKVLTNENN-D-K--LAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNE--TAKVYSGPVDVVRKLVRQ 153 (293)
Q Consensus 80 ~f~~~~~~~~~~~~~~~-~-~--~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~--~~~~~~~~~~~~~~i~~~ 153 (293)
+|.+||.+++.+....+ . . ......+++|++||+++.++++|+|++|+|+|++... ....|++.++++++++++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~ 166 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKS 166 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHh
Confidence 99999999985433221 1 1 2346678999999999999999999999999998542 235789999999999999
Q ss_pred hccchhccchhhHHhhhcccchhHHHHHHHHHHHhhcCCCCCCCCCccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHh
Q psy17712 154 HGVTSVFKGLCATLLRDIPANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRLQ 233 (293)
Q Consensus 154 ~G~~gly~G~~~~~l~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~is~P~d~i~~r~q 233 (293)
||++|||||+.|.+++.+|+.+++|.+||.+++.+.+. ...+....+++|+++|++++++++|+|+||+|||
T Consensus 167 eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 99999999999999999999999999999999976432 2345677889999999999999999999999999
Q ss_pred hCCCC-----CCCCCHHHHHHHHHHhhCccccccchhhhhhhhhcchhhHHHHHHHHHHHh
Q psy17712 234 TAPEG-----TYPNGVRSVLSTTLRNEGPGALYKGAIPVFLRAFPANAACFLGVEYTLSLL 289 (293)
Q Consensus 234 ~~~~~-----~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (293)
.+... .| .++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 239 ~~~~~~~~~~~y-~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 239 MQSGRKGADIMY-TGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTTCCGGGCSC-SSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hcCCCCCCCCCC-CCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 87542 46 899999999999999999999999999996 57899999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.6e-36 Score=257.08 Aligned_cols=190 Identities=23% Similarity=0.359 Sum_probs=165.5
Q ss_pred cchHHHHHHhhhhhhhhhhhcchhhHHHHHHhhcccc----CCcccCCHHHHHHHHHHhhccchhccchhhHHhhhcccc
Q psy17712 99 LAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNE----TAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPAN 174 (293)
Q Consensus 99 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~----~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~ 174 (293)
.+.+..+++|++||+++.++++|+|++|+|+|++... ....|++..+++++++++||++|||||+.+.+++.+|+.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 3566789999999999999999999999999998642 234689999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHhhCCC-----CCCCCCHHHHHH
Q psy17712 175 GAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRLQTAPE-----GTYPNGVRSVLS 249 (293)
Q Consensus 175 ~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~is~P~d~i~~r~q~~~~-----~~~~~~~~~~~~ 249 (293)
+++|.+||.+++.+....+.. ..........+++|++||++++++++|+|+||+|||.+.. ..| .++++|++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~--~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~-~~~~~~~~ 161 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRH--KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF-TGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSC-SSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcc--cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCC-CCHHHHHH
Confidence 999999999999654422110 0112345678999999999999999999999999999853 246 89999999
Q ss_pred HHHHhhCccccccchhhhhhhhhcchhhHHHHHHHHHHHhhh
Q psy17712 250 TTLRNEGPGALYKGAIPVFLRAFPANAACFLGVEYTLSLLNK 291 (293)
Q Consensus 250 ~i~~~eG~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (293)
+|+++||++|||||+.+++++.+|..++.|.+||.+|+.+.+
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999987653
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.8e-37 Score=259.57 Aligned_cols=184 Identities=26% Similarity=0.342 Sum_probs=168.2
Q ss_pred chhHHHHHHhHHHHhhhhhcCchhhhhhhhccCCC--CCCCCCChHHHHHHHHHhhccchhcccccccccchhHHHHHHH
Q psy17712 4 NPVKYFFAGGVGGILTVLVGHPFDTVKVRLQTMST--EKPQYKGTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSF 81 (293)
Q Consensus 4 ~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~--~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~f 81 (293)
+...++++|++|++++.++++|+|++|+|+|++.. ....|++..+.+++++++||++|||||+.+++++.++..+++|
T Consensus 103 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f 182 (303)
T 2lck_A 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999874 2346899999999999999999999999999999999999999
Q ss_pred HhhHHHHhhhcccCCCccchHHHHHHhhhhhhhhhhhcchhhHHHHHHhhccccCCcccCCHHHHHHHHHHhhccchhcc
Q psy17712 82 LGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFK 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~ 161 (293)
.+||.+++.+.+......+....+++|++||++++++++|+|++|+|+|++.. ..|++.++|+++++++||++||||
T Consensus 183 ~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyr 259 (303)
T 2lck_A 183 VTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYK 259 (303)
T ss_dssp HHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHS
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhc
Confidence 99999999887654444566788999999999999999999999999999764 358999999999999999999999
Q ss_pred chhhHHhhhcccchhHHHHHHHHHHHhhc
Q psy17712 162 GLCATLLRDIPANGAYFVTYETIKNFLAD 190 (293)
Q Consensus 162 G~~~~~l~~~~~~~~~~~~y~~l~~~~~~ 190 (293)
|+.|+++|.+|..+++|.+||.+++.+..
T Consensus 260 G~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 260 GFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=23.44 E-value=14 Score=21.93 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHhhccchhc
Q psy17712 44 KGTFDCFTKIVRNESAVGLY 63 (293)
Q Consensus 44 ~~~~~~~~~i~~~~G~~~ly 63 (293)
+++.+.+..||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788888999999998875
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=23.33 E-value=40 Score=21.55 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=26.1
Q ss_pred ccccccchhhhhhhhhcchhhHHHHHHHHHHHhhh
Q psy17712 257 PGALYKGAIPVFLRAFPANAACFLGVEYTLSLLNK 291 (293)
Q Consensus 257 ~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (293)
+...+|-+.-.++..+|..++...+|++.++..+.
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555567888999999999999999877654
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=15.68 E-value=1.1e+02 Score=20.16 Aligned_cols=37 Identities=5% Similarity=-0.099 Sum_probs=29.2
Q ss_pred hCccccccchhhhhhhhhcchhhHHHHHHHHHHHhhh
Q psy17712 255 EGPGALYKGAIPVFLRAFPANAACFLGVEYTLSLLNK 291 (293)
Q Consensus 255 eG~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (293)
+|+...+|-+.-.++..+|..++...+|++.++..+.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 4566677777777888899999999999998876654
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=14.14 E-value=73 Score=20.32 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=27.6
Q ss_pred CccccccchhhhhhhhhcchhhHHHHHHHHHHHhhh
Q psy17712 256 GPGALYKGAIPVFLRAFPANAACFLGVEYTLSLLNK 291 (293)
Q Consensus 256 G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (293)
|+...+|-+.-.++..+|..++...+|++.++..+.
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 445566666667778899999999999998876654
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=13.98 E-value=31 Score=17.32 Aligned_cols=21 Identities=14% Similarity=-0.054 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhcchh
Q psy17712 206 STIFAGGCAGIMYWVVGMPAD 226 (293)
Q Consensus 206 ~~~~~~~~a~~~~~~is~P~d 226 (293)
.++++-.++|++-++.+|-++
T Consensus 5 v~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888776
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=11.97 E-value=1.1e+02 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=24.0
Q ss_pred HHHHhhcchhHHHHHHhhCCCCCCCCCHHHHHHHHHHhhCc
Q psy17712 217 MYWVVGMPADVLKSRLQTAPEGTYPNGVRSVLSTTLRNEGP 257 (293)
Q Consensus 217 ~~~~is~P~d~i~~r~q~~~~~~~~~~~~~~~~~i~~~eG~ 257 (293)
++++=.+|||.+|-.++.- .+....+++.++++|+
T Consensus 274 LaTFdnypfdllRfqL~Sl------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC------CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhh------ccChHHHHHHHHhcCc
Confidence 4566679999996555443 3344667888888883
Done!