RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17712
(293 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 98.5 bits (246), Expect = 4e-26
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 102 WQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFK 161
+AG +G A +T P + +K LQ + ++ Y G +D +K+ ++ G+ ++K
Sbjct: 6 LASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYK 65
Query: 162 GLCATLLRDIPANGAYFVTYETIKNFLADRS 192
GL LLR PA YF TYET+K L +
Sbjct: 66 GLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 97.3 bits (243), Expect = 1e-25
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 4 NPVKYFFAGGVGGILTVLVGHPFDTVKVRLQTM-STEKPQYKGTFDCFTKIVRNESAVGL 62
+ + AGG+ G + V +P D VK RLQ+ + +YKG DCF KI + E GL
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGL 63
Query: 63 YKGMGAPITGVAPIFALSFLGYGAGKKVLTNEN 95
YKG+ + VAP A+ F Y KK+L +
Sbjct: 64 YKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 83.1 bits (206), Expect = 2e-20
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 200 KSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRLQ--TAPEGTYPNGVRSVLSTTLRNEGP 257
+S L+++ AGG AG + V P DV+K+RLQ A G+ + EG
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 258 GALYKGAIPVFLRAFPANAACFLGVEYTLSLLNKFS 293
LYKG +P LR PA A F E LL K
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 72.9 bits (179), Expect = 8e-15
Identities = 67/290 (23%), Positives = 120/290 (41%), Gaps = 33/290 (11%)
Query: 4 NPVKYFFAGGVGGILTVLVGHPFDTVKVRLQTMST-------EKPQYKGTFDCFTKIVRN 56
N F GG+ ++ P + VK+ +QT + + P+Y G +CF ++ +
Sbjct: 6 NFATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKE 65
Query: 57 ESAVGLYKGMGAPITGVAPIFALSFLGYGAGK---KVLTNENNDKLAHWQYFVA----GS 109
+ + L++G A + P A +F A K K + + N K W++F G
Sbjct: 66 QGVLSLWRGNTANVIRYFPTQAFNF----AFKDYFKNMFPKYNQKTDFWKFFGVNILSGG 121
Query: 110 FSGITTAAITAPGE--RIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATL 167
+G ++ I P + R + I + ++G D + K+ +Q G S+++G ++
Sbjct: 122 LAGASSLLIVYPLDFARTRLASDIGKGGD-REFTGLFDCLMKISKQTGFLSLYQGFGVSV 180
Query: 168 LRDIPANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADV 227
I GAYF Y++ K L G K+ ++L I+ ++ P D
Sbjct: 181 QGIIVYRGAYFGLYDSAKALLF-------GNDKNTNILYKWAVAQTVTILAGLISYPFDT 233
Query: 228 LKSRL-----QTAPEGTYPNGVRSVLSTTLRNEGPGALYKGAIPVFLRAF 272
++ R+ + A G L+NEG G +KGA LR
Sbjct: 234 VRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGA 283
Score = 70.6 bits (173), Expect = 5e-14
Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 11 AGGVGGILTVLVGHPFDTVKVRLQT--MSTEKPQYKGTFDCFTKIVRNESAVGLYKGMGA 68
+GG+ G ++L+ +P D + RL + ++ G FDC KI + + LY+G G
Sbjct: 119 SGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGV 178
Query: 69 PITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAA--ITAPGERIK 126
+ G+ F Y + K +L + + +++ VA + +T A I+ P + ++
Sbjct: 179 SVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQT---VTILAGLISYPFDTVR 235
Query: 127 CLLQIQSNETAK---VYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANGAY-FVTYE 182
+ + S AK Y+G +D +K+++ G+ FKG A +LR A GA V Y+
Sbjct: 236 RRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRG--AGGALVLVFYD 293
Query: 183 TIKNFL 188
++ L
Sbjct: 294 ELQKLL 299
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 49.9 bits (119), Expect = 4e-07
Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 29/228 (12%)
Query: 7 KYFFAGGVGGILTVLVGHPFDTVKVRLQTMSTEKPQYKGTFDCFTKIVRNESAVGLYKGM 66
G + G++ V +P D++K +Q K +F F+ I + LY G+
Sbjct: 5 HNLVTGALSGVIVDAVLYPIDSIKTNIQA--------KKSFS-FSDIKK------LYSGI 49
Query: 67 GAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIK 126
+ G P A + Y KK+LT + Y ++ S + IT + P E +K
Sbjct: 50 LPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLPFEIVK 109
Query: 127 CLLQIQSNETAKVYSGPVDVVRKLVRQHGVTS-VFKGLCATLLRDIPANGAYFVTYETIK 185
+Q+ N + + ++ ++ G+ S + K ++R+IP + + +ET+K
Sbjct: 110 QNMQVSGN------ISVLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETLK 163
Query: 186 NFLADRSTSPSGE--KKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSR 231
+++ G+ KK S+ S I GG AG + + P DV+KSR
Sbjct: 164 ----EKAKKDFGKFSKKYPSITSAI-CGGLAGGIAGFLTTPVDVIKSR 206
Score = 49.2 bits (117), Expect = 7e-07
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 99 LAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTS 158
+ H+ V G+ SG+ A+ P + IK IQ+ ++ ++KL
Sbjct: 1 MEHFHNLVTGALSGVIVDAVLYPIDSIKT--NIQAKKSFSFSD-----IKKL-------- 45
Query: 159 VFKGLCATLLRDIPANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMY 218
+ G+ TL+ +PA+ ++ YE K L + + S K ++ ++ST A I
Sbjct: 46 -YSGILPTLVGTVPASAFFYCFYELSKKLLTEYRENIS--KTNLYLIST----SIAEITA 98
Query: 219 WVVGMPADVLKSRLQTAPEGTYPNGVRSVLSTTLRNEGPGALYKGAIPVFLRAFP 273
+V +P +++K +Q + + ++++ T R P L K + +R P
Sbjct: 99 CIVRLPFEIVKQNMQVSGNISV---LKTIYEITQREGLPSFLGKSYFVMIVREIP 150
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein;
Provisional.
Length = 267
Score = 30.6 bits (70), Expect = 0.86
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 YFFAGGVGGILTVLVGHPFDTVKVRLQTMSTEK 40
+ F G G +L +L+GH FD + R
Sbjct: 14 FLFGGFFGALLGLLIGHMFDKARSRKGGGWFAN 46
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase. This domain binds a
light harvesting cofactor.
Length = 164
Score = 28.7 bits (65), Expect = 2.4
Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
V G P +V+ +L ++ G ++V+
Sbjct: 71 VRRGDPAEVLPELAKELGASAVY 93
>gnl|CDD|237707 PRK14410, PRK14410, membrane protein; Provisional.
Length = 235
Score = 28.6 bits (64), Expect = 3.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 56 NESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLT 92
NE A+ L GM A I V +FA G+ GK V T
Sbjct: 88 NEVALRLLAGMSAVIGHVFTVFA----GFKGGKGVST 120
>gnl|CDD|198246 cd10383, SH2_SOCS2, Src homology 2 (SH2) domain found in
suppressor of cytokine signaling (SOCS) proteins. SH2
domain found in SOCS proteins. SOCS was first recognized
as a group of cytokine-inducible SH2 (CIS) domain
proteins comprising eight family members in human (CIS
and SOCS1-SOCS7). In addition to the SH2 domain, SOCS
proteins have a variable N-terminal domain and a
conserved SOCS box in the C-terminal domain. SOCS
proteins bind to a substrate via their SH2 domain. The
prototypical members, CIS and SOCS1-SOCS3, have been
shown to regulate growth hormone signaling in vitro and
in a classic negative feedback response compete for
binding at phosphotyrosine sites in JAK kinase and
receptor pathways to displace effector proteins and
target bound receptors for proteasomal degradation. Loss
of SOCS activity results in excessive cytokine signaling
associated with a variety of hematopoietic, autoimmune,
and inflammatory diseases and certain cancers. Members
(SOCS4-SOCS7) were identified by their conserved SOCS
box, an adapter motif of 3 helices that associates
substrate binding domains, such as the SOCS SH2 domain,
ankryin, and WD40 with ubiquitin ligase components.
These show limited cytokine induction. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 103
Score = 27.5 bits (61), Expect = 3.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 218 YWVVGMPADVLKSRLQTAPEGTY 240
YW M + K +LQ APEGT+
Sbjct: 10 YWG-SMTVNEAKEKLQDAPEGTF 31
>gnl|CDD|237013 PRK11898, PRK11898, prephenate dehydratase; Provisional.
Length = 283
Score = 27.9 bits (63), Expect = 5.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 218 YWVVGMPADVLKSRLQTAPEGTYPNGVRSVLSTTLRNEGPGALYKGAIPVF 268
+W++G R G ++ L TL N PGALYK A+ F
Sbjct: 178 FWLLGRKKPPPPLR---------TGGDKTSLVLTLPNNLPGALYK-ALSEF 218
>gnl|CDD|182510 PRK10514, PRK10514, putative acetyltransferase; Provisional.
Length = 145
Score = 27.3 bits (61), Expect = 6.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 56 NESAVGLYKGMGAPITGVAP 75
NE AVG YK MG +TG +
Sbjct: 109 NEQAVGFYKKMGFKVTGRSE 128
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 27.9 bits (63), Expect = 7.1
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 94 ENNDKLAHWQYFVAG---SFSGITTAAITA-----PGERIKCLLQIQSNETA 137
++ K Y V G SFSG+ TAA A P E + LQ ETA
Sbjct: 182 KDGKKYIDLPYVVKGMDFSFSGLLTAAKRAYDAGEPLEDVCYSLQ----ETA 229
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type. This
model describes the bacterial, ribosomal, and
chloroplast forms of ribosomal protein S2. TIGR01012
describes the archaeal and cytosolic forms [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 225
Score = 27.7 bits (62), Expect = 7.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 14 VGGILTVLVGHPFDTVKVRLQTMST-EKPQYKGTFDCFTK 52
+GG+LT F T++ ++ + EK + GTFD TK
Sbjct: 95 LGGMLT-----NFKTIRKSIKKLKKLEKMEEDGTFDDLTK 129
>gnl|CDD|233743 TIGR02136, ptsS_2, phosphate binding protein. Members of this
family are phosphate-binding proteins. Most are found in
phosphate ABC-transporter operons, but some are found in
phosphate regulatory operons. This model separates
members of the current family from the phosphate ABC
transporter phosphate binding protein described by
TIGRFAMs model TIGR00975 [Transport and binding
proteins, Anions].
Length = 287
Score = 27.4 bits (61), Expect = 9.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 45 GTFDCFTKIVRNESAVGLYKGM----GAPITGVA-PIFALSFLGYG 85
GT D F + V ++ + K GA ++ V+ A+ +LG G
Sbjct: 171 GTRDTFEEEVMGKAKIKPGKNEQESNGAVVSIVSSNPGAIGYLGLG 216
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,663,754
Number of extensions: 1375357
Number of successful extensions: 1291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 26
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)