RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17712
(293 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 221 bits (565), Expect = 2e-71
Identities = 76/293 (25%), Positives = 117/293 (39%), Gaps = 17/293 (5%)
Query: 9 FFAGGVGGILTVLVGHPFDTVKVRLQT--------MSTEKPQYKGTFDCFTKIVRNESAV 60
F G + L+ P DT KVRLQ + QY+G +VR E
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 61 GLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITA 120
LY G+ A + ++ Y + K+ T ++ +AGS +G A+
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK-GSEHAGIGSRLLAGSTTGALAVAVAQ 123
Query: 121 PGERIKCLLQIQSN-ETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANGAYFV 179
P + +K Q Q+ + Y V+ + + R+ G+ ++KG + R+ N A V
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183
Query: 180 TYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRLQTAPEGT 239
TY+ IK+ L + + + AG V+ P DV+K+R + G
Sbjct: 184 TYDLIKDTLLKANLMTDD------LPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ 237
Query: 240 YPNGVRSVLSTTLRNEGPGALYKGAIPVFLRAFPANAACFLGVEYTLSLLNKF 292
Y + T LR EGP A YKG +P FLR N F+ E L
Sbjct: 238 Y-HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289
Score = 124 bits (313), Expect = 6e-34
Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 5/196 (2%)
Query: 4 NPVKYFFAGGVGGILTVLVGHPFDTVKVRLQTMST--EKPQYKGTFDCFTKIVRNESAVG 61
AG G L V V P D VKVR Q + +Y+ T + + I R E G
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162
Query: 62 LYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAP 121
L+KG + A + + Y K L N +F + +G T I +P
Sbjct: 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASP 222
Query: 122 GERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANGAYFVTY 181
+ +K N Y ++R+ G + +KG + LR N FVTY
Sbjct: 223 VDVVKTRYM---NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 182 ETIKNFLADRSTSPSG 197
E +K L S
Sbjct: 280 EQLKRALMAAYQSREA 295
Score = 78.1 bits (193), Expect = 8e-17
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 1 MAENPVKYFFAGGVGGILTVLVGHPFDTVKVRLQTMSTEKPQYKGTFDCFTKIVRNESAV 60
M ++ +F + G T ++ P D VK R + QY C ++R E
Sbjct: 198 MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL--GQYHSAGHCALTMLRKEGPR 255
Query: 61 GLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDK 98
YKG + + F+ Y K+ L +
Sbjct: 256 AFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSR 293
Score = 57.3 bits (139), Expect = 9e-10
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 204 MLSTIFAGGCAGIMYWVVGMPADVLKSRLQTAPE---------GTYPNGVRSVLSTTLRN 254
M G A + ++ P D K RLQ E GV + T +R
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 255 EGPGALYKGAIPVFLRAFPANAACF 279
EGP +LY G + R +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRI 85
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 182 bits (463), Expect = 5e-56
Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 23/286 (8%)
Query: 4 NPVKYFFAGGVGGILTVLVGHPFDTVKVRLQTMSTEKP-----QYKGTFDCFTKIVRNES 58
+ +K F AGGV ++ P + VK+ LQ K QYKG DC +I + +
Sbjct: 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 65
Query: 59 AVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYF----VAGSFSGIT 114
+ ++G A + P AL+F K++ + W+YF +G +G T
Sbjct: 66 FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 125
Query: 115 TAAITAPGERIKCLLQIQSNETAK--VYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIP 172
+ P + + L + A ++G + + K+ + G+ +++G ++ I
Sbjct: 126 SLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIII 185
Query: 173 ANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRL 232
AYF Y+T K L D ++ T AG + Y P D ++ R+
Sbjct: 186 YRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVS---Y-----PFDTVRRRM 237
Query: 233 QTAP----EGTYPNGVRSVLSTTLRNEGPGALYKGAIPVFLRAFPA 274
G ++EGP A +KGA LR
Sbjct: 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG 283
Score = 120 bits (303), Expect = 2e-32
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 12/194 (6%)
Query: 95 NNDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQ----SNETAKVYSGPVDVVRKL 150
++ L+ + F+AG + + AP ER+K LLQ+Q K Y G +D V ++
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 151 VRQHGVTSVFKGLCATLLRDIPANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFA 210
++ G S ++G A ++R P F + K + + +
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWR--YFAGNLAS 118
Query: 211 GGCAGIMYWVVGMPADVLKSRLQT-----APEGTYPNGVRSVLSTTLRNEGPGALYKGAI 265
GG AG P D ++RL A + + G+ + ++ +++G LY+G
Sbjct: 119 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREF-TGLGNCITKIFKSDGLRGLYQGFN 177
Query: 266 PVFLRAFPANAACF 279
AA F
Sbjct: 178 VSVQGIIIYRAAYF 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 3e-11
Identities = 49/370 (13%), Positives = 102/370 (27%), Gaps = 133/370 (35%)
Query: 3 ENPVKYFFAGGVGGILTVLVGHPF--DTVKVRLQTMSTEKPQYKGTFD------------ 48
E V+ F V +L + + F +K + S Y D
Sbjct: 76 EEMVQKF----VEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 49 ------CFTKI------VRNESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNE-- 94
+ K+ +R V + G+ G+GK + +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLID-GVL-----------------GSGKTWVALDVC 171
Query: 95 NNDKL-------AHWQYFVAGSFSGITTAAITAPGERIKCL----LQIQSNETAKV---Y 140
+ K+ W + +P ++ L QI N T++
Sbjct: 172 LSYKVQCKMDFKIFW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 141 SGPV------DVVRKLVRQHG---------------VTSVFKGLCATLL--RDIPANGAY 177
+ + +R+L++ + F C LL R
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTD 279
Query: 178 FVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCA---------GIMYWVVGMPADVL 228
F++ T + D + + S+L C + + A+ +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 229 KSRLQTAPEGTYPNG--VRSVLSTTLRNEGPG---ALYKG-AIPVFLRAFPANAACFLGV 282
+ L T + N + +++ ++L P ++ ++ FP +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV------FPPS------A 385
Query: 283 ---EYTLSLL 289
LSL+
Sbjct: 386 HIPTILLSLI 395
Score = 29.4 bits (65), Expect = 1.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 261 YKGAIPVFLRAFPANAACFLGVEYTLSLLNK 291
YK + VF AF N C + S+L+K
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSK 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 6e-07
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 53/172 (30%)
Query: 5 PVKYFFAG---G-------VGGILTVLVGHPF-DTVKV---RLQTMSTEKPQYKGTFDCF 50
P FAG G + ++ V+V R TM P
Sbjct: 1754 PADATFAGHSLGEYAALASLADVM------SIESLVEVVFYRGMTMQVAVP--------- 1798
Query: 51 TKIVRNESAVGLYKGMGAPITG-VAPIF---ALSFLGYGAGKKVLTNEN----NDKLAHW 102
R+E Y GM A G VA F AL ++ GK+ T N + +
Sbjct: 1799 ----RDELGRSNY-GMIAINPGRVAASFSQEALQYVVERVGKR--TGWLVEIVNYNVENQ 1851
Query: 103 QYFVAGSFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQH 154
QY AG A+ + +++Q + ++ + + V H
Sbjct: 1852 QYVAAG-----DLRALDTVTNVLN-FIKLQKIDIIEL---QKSLSLEEVEGH 1894
Score = 43.9 bits (103), Expect = 5e-05
Identities = 49/305 (16%), Positives = 81/305 (26%), Gaps = 93/305 (30%)
Query: 9 FFA--GGVGGILT-------------VLVGHPFDTVKVRLQTMSTE----KPQYKGTFDC 49
A GG G VLVG L + + + +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 50 FTKIVRNESAVGLYKGMGAPITGVAP-IFALSFLGYGAGKKVLTNENNDKLAHWQYFVAG 108
+ + + PI+ P I + Y K+L +L + G
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISC--PLIGVIQLAHYVVTAKLL-GFTPGELRSYLKGATG 272
Query: 109 SFSGITTAAITAPGERIKCLLQIQSNETAKVYSGPVDVVRKL----VRQHGVTSVFKGLC 164
G+ TA A S E+ + + L VR + L
Sbjct: 273 HSQGLVTAVAIAET---------DSWESF--FVSVRKAITVLFFIGVRCYEAYPNT-SLP 320
Query: 165 ATLLRDIPANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMP 224
++L D N PS MLS + +
Sbjct: 321 PSILEDSLENNE----------------GVPS------PMLS-------------ISNLT 345
Query: 225 ADVLKSRL----QTAPEGTY-----PNGVRS-VLSTTLRNEG-PGALYKGAIPVFLRAFP 273
+ ++ + P G NG ++ V+S G P +LY + + LR
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS------GPPQSLY--GLNLTLRKAK 397
Query: 274 ANAAC 278
A +
Sbjct: 398 APSGL 402
Score = 42.7 bits (100), Expect = 1e-04
Identities = 43/245 (17%), Positives = 70/245 (28%), Gaps = 66/245 (26%)
Query: 48 DCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGY----------GAGKKVLTN---- 93
+ F KI+ + P T A + FLGY G +VL
Sbjct: 35 EQFNKIL--PEPTEGFAADDEPTT-PAELVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 94 ------ENNDKLAHWQYFVAGSFSGITTAAITAPGERIKC-------------------L 128
E ND H +A + E IK L
Sbjct: 91 FENCYLEGND--IH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 129 LQIQSNETAKVYS-----GPVDV----VRKLVR--QHGVTSVFK---GLCATLLRDIPAN 174
+ A++ + G D +R L + V + K + L+R
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 175 GAYFVTYETIKNFLADRSTSPSGE---KKSVSM-LSTIFAGGCAGIMYWVVGMPADVLKS 230
F I +L + S +P + +S L + + ++G L+S
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 231 RLQTA 235
L+ A
Sbjct: 266 YLKGA 270
Score = 39.3 bits (91), Expect = 0.001
Identities = 49/249 (19%), Positives = 80/249 (32%), Gaps = 90/249 (36%)
Query: 65 GMGAP-----ITGVAPIFALSFLGY-----GAGKKV---LTNENNDKLAHWQYFVAG--- 108
G P I+ + ++ AGK+V L N V+G
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAKNLVVSGPPQ 384
Query: 109 SFSGITTAAITAPGERIKCLLQIQSNETAKV-YSGPVDVVRKLVRQHG---VTSVF---- 160
S G+ + K + +++ +S RKL + V S F
Sbjct: 385 SLYGLNLTL-----RKAKAP---SGLDQSRIPFSE-----RKLKFSNRFLPVASPFHSHL 431
Query: 161 -KGLCATLLRDIPANGAYF--------VTYETIKNFLAD-RSTSPSGEKKSVSMLSTI-- 208
+ +D+ N F V Y+T +D R S S ++ V + +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPV-YDTFDG--SDLRVLSGSISERIVDCIIRLPV 488
Query: 209 ---------------F-AGGCAGIMYWVVGMPADVLKSRLQTAPEGTYPNGVRSVLSTTL 252
F GG +G+ G VL R + +GT GVR +++ TL
Sbjct: 489 KWETTTQFKATHILDFGPGGASGL-----G----VLTHRNK---DGT---GVRVIVAGTL 533
Query: 253 RNEGPGALY 261
+ P Y
Sbjct: 534 -DINPDDDY 541
Score = 30.8 bits (69), Expect = 0.57
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 72/210 (34%)
Query: 63 YKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGI-----TTAA 117
+GMG + + + V D H++ S I
Sbjct: 1628 EQGMGMDLYKTSKAA----------QDVW--NRADN--HFKDTYGFSILDIVINNPVNLT 1673
Query: 118 ITAPGERIKCLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANGAY 177
I GE+ K +I+ N +A ++ VD K + +FK +
Sbjct: 1674 IHFGGEKGK---RIRENYSAMIFETIVDGKLKTEK------IFKEINEHSTS-------- 1716
Query: 178 FVTYETIKNFLAD-RSTSP-----SG------EKKSVSMLSTIFAG---G-------CAG 215
T+ + K L+ + T P + K + FAG G A
Sbjct: 1717 -YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 216 IMYWVVGMP----ADVLKSR---LQTAPEG 238
+ M +V+ R +Q A
Sbjct: 1776 V------MSIESLVEVVFYRGMTMQVAVPR 1799
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.023
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 16/42 (38%)
Query: 39 EKPQYKGTFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALS 80
EK K K+ ++++ LY AP A+
Sbjct: 18 EKQALK-------KL---QASLKLYA----D--DSAPALAIK 43
Score = 31.1 bits (69), Expect = 0.22
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 198 EKKSVSMLST---IFAGGCAGIMYWVVGMPADVLKSRLQ 233
EK+++ L ++A A PA +K+ ++
Sbjct: 18 EKQALKKLQASLKLYADDSA---------PALAIKATME 47
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex,...; protein-protein interaction,
redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB:
1zwv_A
Length = 58
Score = 30.3 bits (69), Expect = 0.082
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 135 ETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANGAYF-VTYETIKNFLADRST 193
+ K + P VR L ++ + L ++ +G + E I N+L ++
Sbjct: 4 KGRKTLATPA--VRNLAMENNIK----------LSEVVGSGKDGRILKEDILNYLEKQTL 51
Query: 194 SPSGE 198
Sbjct: 52 EHHHH 56
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 30.3 bits (69), Expect = 0.83
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
+ SG P +++ L + G +VF
Sbjct: 118 IRSGKPEEILPSLAKDFGARTVF 140
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 29.9 bits (68), Expect = 0.90
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
V+ G P + R+L Q + +
Sbjct: 82 VFEGEPAYIFRRLHEQVRLHRIC 104
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 29.6 bits (67), Expect = 1.2
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
V+ G P +V+ + +++ V +
Sbjct: 86 VFKGEPGEVLVRCLQEWKVKRLC 108
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 29.6 bits (67), Expect = 1.4
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
V G P +V ++ + V +
Sbjct: 107 VVRGKPAEVFPRIFKSWRVEMLT 129
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; E3_binding domain; NMR {Homo
sapiens}
Length = 70
Score = 27.0 bits (60), Expect = 1.6
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 132 QSNETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANGAY-FVTYETIKNFLAD 190
Q + K + P VR+L ++ + L ++ +G + E I N+L
Sbjct: 9 QEIKGRKTLATPA--VRRLAMENNIK----------LSEVVGSGKDGRILKEDILNYLEK 56
Query: 191 RSTSPS 196
++ +
Sbjct: 57 QTGAIL 62
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 29.1 bits (66), Expect = 1.9
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
V +G P V+ ++ +Q +++
Sbjct: 83 VTTGLPEQVIPQIAKQINAKTIY 105
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 28.2 bits (64), Expect = 3.3
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
V G P + V + R+ +V+
Sbjct: 70 VLEGLPWEKVPEAARRLKAKAVY 92
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 28.3 bits (64), Expect = 3.7
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 136 TAKVYSGPVDVVRKLVRQHGVTSVF 160
+ V++V+++ ++ VT +F
Sbjct: 76 EVDDFVASVEIVKQVCAENSVTHLF 100
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 28.3 bits (64), Expect = 3.8
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 143 PVDVVRKLVRQHGVTSVF 160
V + +V+ G + +F
Sbjct: 89 SVASLLDVVKSTGASQIF 106
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 27.9 bits (63), Expect = 3.8
Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 139 VYSG-PVDVVRKLVRQHGVTSVF 160
+ G P ++ +L +Q +V+
Sbjct: 75 LLQGDPQHLIPQLAQQLQAEAVY 97
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 26.9 bits (57), Expect = 10.0
Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 13/185 (7%)
Query: 67 GAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAAITAPGERIK 126
G P+TG+ ++ +G G K + K W ++ S A A
Sbjct: 79 GVPVTGLEQYAQINAIGLGIAKLTPESGKGYKTPQWVSYI-NSVKAADPARSLANYSYTD 137
Query: 127 CLLQIQSNETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANGAYFVTYETIKN 186
+ T +V P D ++ + T+ + +G Y T++T +
Sbjct: 138 GKDSAGNPITKEVKFTPGDAIQANIESSCKTTCLTVV---------DSGVYRYTFQTNLS 188
Query: 187 FLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRLQTAPEGTYPNGVRS 246
L ++ T+ +V D L S R+
Sbjct: 189 TLPAIEGLDLTYDPTLIHRITLELQTDGSKDAKLVNSHIDFLPS---DNFRVAKETETRT 245
Query: 247 VLSTT 251
V+
Sbjct: 246 VVDLE 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0316 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,350,861
Number of extensions: 253792
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 32
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.9 bits)