RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17712
         (293 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score =  121 bits (304), Expect = 2e-33
 Identities = 62/294 (21%), Positives = 112/294 (38%), Gaps = 24/294 (8%)

Query: 6   VKYFFAGGVGGILTVLVGHPFDTVKVRLQTMSTEK-----PQYKGTFDCFTKIVRNESAV 60
           +K F AGGV   ++     P + VK+ LQ     K      QYKG  DC  +I + +  +
Sbjct: 7   LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 66

Query: 61  GLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFV----AGSFSGITTA 116
             ++G  A +    P  AL+F      K++     +     W+YF     +G  +G T+ 
Sbjct: 67  SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 126

Query: 117 AITAPGERIKCLL--QIQSNETAKVYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPAN 174
               P +  +  L   +      + ++G  + + K+ +  G+  +++G   ++   I   
Sbjct: 127 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 186

Query: 175 GAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGGCAGIMYWVVGMPADVLKSRLQT 234
            AYF  Y+T K  L D             ++ +         +  +V  P D ++ R+  
Sbjct: 187 AAYFGVYDTAKGMLPDPKNVH--------IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 238

Query: 235 ----APEGTYPNGVRSVLSTTLRNEGPGALYKGAIPVFLRAFPANAACFLGVEY 284
                       G         ++EGP A +KGA    LR     A   +  + 
Sbjct: 239 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE 291



 Score = 77.1 bits (188), Expect = 6e-17
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 8/189 (4%)

Query: 1   MAENPVKYFFAGGVGGILTVLVGHPFDTVKVRLQTMSTEK---PQYKGTFDCFTKIVRNE 57
                     +GG  G  ++   +P D  + RL     +     ++ G  +C TKI +++
Sbjct: 107 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD 166

Query: 58  SAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTAA 117
              GLY+G    + G+    A  F  Y   K +L +  N  +     ++           
Sbjct: 167 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHI--IVSWMIAQTVTAVAGL 224

Query: 118 ITAPGERIKCLLQIQSNETAK--VYSGPVDVVRKLVRQHGVTSVFKGLCATLLRDIPANG 175
           ++ P + ++  + +QS       +Y+G VD  RK+ +  G  + FKG  + +LR +    
Sbjct: 225 VSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GA 283

Query: 176 AYFVTYETI 184
              V Y+ I
Sbjct: 284 FVLVLYDEI 292



 Score = 76.7 bits (187), Expect = 9e-17
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 10/192 (5%)

Query: 96  NDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQ----SNETAKVYSGPVDVVRKLV 151
           +  L+  + F+AG  +   +    AP ER+K LLQ+Q         K Y G +D V ++ 
Sbjct: 1   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60

Query: 152 RQHGVTSVFKGLCATLLRDIPANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAG 211
           ++ G  S ++G  A ++R  P     F   +  K              +       + +G
Sbjct: 61  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWR--YFAGNLASG 118

Query: 212 GCAGIMYWVVGMPADVLKSRLQTAPEGTYPN----GVRSVLSTTLRNEGPGALYKGAIPV 267
           G AG        P D  ++RL              G+ + ++   +++G   LY+G    
Sbjct: 119 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 178

Query: 268 FLRAFPANAACF 279
                   AA F
Sbjct: 179 VQGIIIYRAAYF 190


>d2dcya1 b.29.1.11 (A:1-185) Xylanase II {Bacillus subtilis [TaxId:
           1423]}
          Length = 185

 Score = 25.1 bits (55), Expect = 8.7
 Identities = 6/41 (14%), Positives = 18/41 (43%)

Query: 172 PANGAYFVTYETIKNFLADRSTSPSGEKKSVSMLSTIFAGG 212
            + G Y V +    NF+  +  +     ++++  + ++A  
Sbjct: 21  GSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPN 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,034,255
Number of extensions: 44924
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 8
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)