RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17720
         (80 letters)



>2nrh_A Transcriptional activator, putative, BAF family; structural
           genomics, unknown function, putative transcription
           activator, PSI-2; 2.30A {Campylobacter jejuni} SCOP:
           c.55.1.13 c.55.1.13
          Length = 219

 Score = 31.2 bits (71), Expect = 0.016
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 7/40 (17%)

Query: 26  TSQAMRAGFYGGLV--VDYPHSTKAKKFFLVLMTGGDLPL 63
           T  A+  G + G+   +       A +   +  TGGD   
Sbjct: 146 TMDALSYGVFKGIYLLIK-----DAAQNKKLYFTGGDGQF 180


>3djc_A Type III pantothenate kinase; structural genomics, putative
           transfera 2, protein structure initiative; 2.40A
           {Legionella pneumophila subsp}
          Length = 266

 Score = 27.3 bits (61), Expect = 0.47
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 26  TSQAMRAG-FYG------GLVVDYPHSTKAKKFFLVLMTGGDLPL 63
           T +++++G +YG       L+    H        L+L TGG   L
Sbjct: 186 TIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILILATGGFASL 230


>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
           {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
           2f9t_A*
          Length = 271

 Score = 27.0 bits (60), Expect = 0.52
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 26  TSQAMRAGFYGGLV--VDYPHSTKAKKF---FLVLMTGGDLPL 63
           T++A+  G    L   V   ++   +       + +TGGD  L
Sbjct: 203 TAEAVERGCLLMLRGFVREQYAMACELLGPDCEIFLTGGDAEL 245


>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding,
           coenzyme A biosynthesis, cytoplasm, metal-binding,
           nucleotide-binding, potassium; HET: PAU; 1.51A
           {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB:
           3bf1_A* 3bf3_A* 2gtd_A
          Length = 249

 Score = 25.3 bits (56), Expect = 2.3
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 26  TSQAMRAGFYGGLV--VDY--PHSTKAKKFFLVLMTGGDLPL 63
           T + +R G   G V  ++       +      V++TGG   +
Sbjct: 182 TEENIRLGVVNGSVYALEGIIGRIKEVYGDLPVVLTGGQSKI 223


>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet,
           beta-meander region, transferase; 1.60A {Homo sapiens}
          Length = 355

 Score = 24.4 bits (53), Expect = 5.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 7   TARAVFQFYPENS 19
            AR V  F+P  S
Sbjct: 104 RARGVVGFWPAQS 116


>1msk_A Cobalamin-dependent methionine synthase; methyltransferase,
           transferase, methionine biosynthesis, vitamin B12; HET:
           SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
          Length = 331

 Score = 24.3 bits (53), Expect = 5.7
 Identities = 4/13 (30%), Positives = 5/13 (38%)

Query: 7   TARAVFQFYPENS 19
             R V   +P N 
Sbjct: 98  NPRGVVGLFPANR 110


>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
           pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
           anthracis str}
          Length = 268

 Score = 24.2 bits (53), Expect = 6.1
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 9/41 (21%)

Query: 26  TSQAMRAG-FYG------GLVVDYPHSTKAKKFFLVLMTGG 59
           T  AM++G  YG      G+V       K +    V+ TGG
Sbjct: 184 TVSAMQSGILYGYVGQVEGIVKRMKEEAKQE--PKVIATGG 222


>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane
            protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU
            DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A*
            2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A*
            1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A*
            1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
          Length = 1057

 Score = 23.7 bits (52), Expect = 9.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)

Query: 54   VLMTG-----GDLPLPPALGEGEGSQVAVG 78
            +LMT      G +PL  + G G G+Q AVG
Sbjct: 975  ILMTSLAFILGVMPLVISTGAGSGAQNAVG 1004


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0806    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,200,881
Number of extensions: 58315
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 10
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)