BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17721
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JZT|A Chain A, Crystal Structure Of Yeast Ynu0, Ynl200c
pdb|1JZT|B Chain B, Crystal Structure Of Yeast Ynu0, Ynl200c
Length = 246
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 5 DLRSISKAQFSLKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVV 64
+L S AQ +Q LR T + P N+ LV ++ ++ Y VV
Sbjct: 33 ELAGFSVAQAVCRQFP-LRGKTETEKGKHVFVIAGPGNNGGDGLVCARHLKLFGYNP-VV 90
Query: 65 DYPHSTKAKKFFLVLMTGGDLPLPPALGEGEGSQSPWDKP-REMYGSAAIQDFSFEKPPK 123
YP ++ +F+ L+ + P L + EG+ + KP + + AI FSF KPP
Sbjct: 91 FYPKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEYLKPEKTLCIVDAIFGFSF-KPPX 149
Query: 124 YSFFSGL 130
F G+
Sbjct: 150 REPFKGI 156
>pdb|1H31|A Chain A, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|C Chain C, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|E Chain E, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|G Chain G, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H32|A Chain A, Reduced Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H33|A Chain A, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|2OZ1|A Chain A, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|C Chain C, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|E Chain E, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|G Chain G, The Soxax Complex Of Rhodovulum Sulfidophilum
Length = 261
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 33 RAVFQFYPENSAQIELVTS--QAMRAGFYGGLVVDYPHSTKAKKFFLVLMTGGDLPLPPA 90
RAV+ Y E++ ++ V A R G DY L+ +P+ A
Sbjct: 91 RAVYPKYVESAGKVRTVEQMINACRTSRMGAPEWDYIGPDMTAMVALIASVSRGMPVSVA 150
Query: 91 LGEGEG-SQSPWDKPREMY 108
+ +G +QS W+K RE+Y
Sbjct: 151 I---DGPAQSTWEKGREIY 166
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 49 VTSQAMRAGF--YGGLVVDYPHSTKAKKFF 76
+ + A F +G LVVD+PH ++K +F
Sbjct: 20 IDEDEITASFRRFGPLVVDWPHKAESKSYF 49
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 77 LVLMTGGDLPLPPALGEGE-GSQSPWDKPREMYGSAAIQDFSFEKPPKYSF 126
L GG LPLP EG+ G P ++ A D E PP +S
Sbjct: 281 LTYSIGGHLPLPVLFVEGQAGYLEGRGLPVGLFDDATYDDRVXELPPSFSL 331
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 73 KKFFLVLMTGGDLPLPPALGEGE-GSQSPWDKPREMYGSAAIQDFSFEKPPKYSF 126
+K L GG LPLP EG+ G P ++ A D E PP +S
Sbjct: 277 EKNSLTYSIGGHLPLPVLFVEGQAGYLEGRGLPVGLFDDATYDDRVXELPPSFSL 331
>pdb|3ES2|A Chain A, Structure Of The C-Terminal Phosphatase Domain Of P.
Aeruginonsa Rssb
pdb|3ES2|B Chain B, Structure Of The C-Terminal Phosphatase Domain Of P.
Aeruginonsa Rssb
pdb|3F79|A Chain A, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|B Chain B, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|C Chain C, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|D Chain D, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|E Chain E, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|F Chain F, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
Length = 255
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 73 KKFFLVLMTGGDLPLPPALGEGE-GSQSPWDKPREMYGSAAIQDFSFEKPPKYSF 126
+K L GG LPLP EG+ G P ++ A D E PP +S
Sbjct: 138 EKNSLTYSIGGHLPLPVLFVEGQAGYLEGRGLPVGLFDDATYDDRVXELPPSFSL 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,707,245
Number of Sequences: 62578
Number of extensions: 138458
Number of successful extensions: 240
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 19
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)