Query psy17721
Match_columns 130
No_of_seqs 103 out of 197
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 21:18:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1541|consensus 100.0 2.6E-39 5.6E-44 267.4 7.0 87 6-95 116-215 (270)
2 TIGR00438 rrmJ cell division p 88.1 2.9 6.2E-05 31.3 6.9 23 18-40 126-148 (188)
3 smart00828 PKS_MT Methyltransf 86.1 2.3 5E-05 32.2 5.5 61 8-69 73-148 (224)
4 TIGR03534 RF_mod_PrmC protein- 83.7 2.6 5.7E-05 32.0 4.9 39 18-59 197-235 (251)
5 PF08241 Methyltransf_11: Meth 83.2 0.75 1.6E-05 29.0 1.5 30 7-36 65-95 (95)
6 PF12589 WBS_methylT: Methyltr 81.8 0.77 1.7E-05 32.7 1.2 17 79-95 1-20 (87)
7 TIGR00138 gidB 16S rRNA methyl 81.3 4 8.6E-05 31.3 5.1 41 18-58 122-162 (181)
8 PRK00517 prmA ribosomal protei 79.0 4.9 0.00011 31.9 5.1 40 18-59 193-232 (250)
9 TIGR00452 methyltransferase, p 78.4 3.5 7.5E-05 34.9 4.3 33 5-38 190-225 (314)
10 TIGR00537 hemK_rel_arch HemK-r 78.3 7.6 0.00016 28.7 5.6 48 17-66 119-166 (179)
11 PRK00107 gidB 16S rRNA methylt 77.9 4.7 0.0001 31.4 4.6 36 18-56 125-160 (187)
12 PRK00377 cbiT cobalt-precorrin 76.7 8.4 0.00018 29.2 5.6 40 18-59 125-164 (198)
13 PRK09328 N5-glutamine S-adenos 75.3 26 0.00055 27.3 8.0 44 17-64 217-260 (275)
14 PRK01683 trans-aconitate 2-met 75.3 3.1 6.7E-05 32.4 2.9 34 8-42 99-133 (258)
15 COG2230 Cfa Cyclopropane fatty 75.2 5 0.00011 34.2 4.4 38 6-43 141-181 (283)
16 PF02353 CMAS: Mycolic acid cy 72.5 3.6 7.8E-05 33.9 2.8 22 18-39 146-167 (273)
17 PRK14968 putative methyltransf 72.2 24 0.00052 25.4 6.8 43 17-61 127-169 (188)
18 COG2519 GCD14 tRNA(1-methylade 71.9 9 0.00019 32.5 5.1 39 19-59 176-214 (256)
19 PRK08317 hypothetical protein; 69.4 15 0.00033 27.0 5.3 21 18-38 104-124 (241)
20 PRK15451 tRNA cmo(5)U34 methyl 65.7 15 0.00031 29.0 4.8 41 10-50 133-178 (247)
21 PRK00121 trmB tRNA (guanine-N( 65.2 18 0.0004 27.8 5.2 41 17-59 135-175 (202)
22 PF06859 Bin3: Bicoid-interact 65.1 6.7 0.00015 29.4 2.7 23 18-40 24-46 (110)
23 PRK14967 putative methyltransf 65.1 11 0.00025 29.0 4.1 46 16-63 137-182 (223)
24 PRK08287 cobalt-precorrin-6Y C 64.5 19 0.00042 26.7 5.1 46 18-66 111-157 (187)
25 TIGR00740 methyltransferase, p 61.7 16 0.00035 28.3 4.3 41 8-48 128-173 (239)
26 TIGR00091 tRNA (guanine-N(7)-) 61.6 21 0.00045 27.2 4.9 38 18-57 112-149 (194)
27 PRK04457 spermidine synthase; 61.4 32 0.00068 27.9 6.2 52 13-67 152-203 (262)
28 PRK07402 precorrin-6B methylas 61.2 35 0.00075 25.7 6.0 45 18-64 122-166 (196)
29 PRK10901 16S rRNA methyltransf 61.2 50 0.0011 28.5 7.6 35 16-50 350-388 (427)
30 PLN02244 tocopherol O-methyltr 61.2 18 0.00039 30.3 4.8 52 18-69 203-282 (340)
31 PRK04266 fibrillarin; Provisio 60.4 62 0.0014 25.9 7.6 60 18-79 156-222 (226)
32 PF08242 Methyltransf_12: Meth 59.9 3.6 7.8E-05 27.2 0.4 27 7-33 71-98 (99)
33 PRK14103 trans-aconitate 2-met 57.9 11 0.00024 29.5 2.9 32 8-39 95-127 (255)
34 PF08704 GCD14: tRNA methyltra 55.6 16 0.00035 30.1 3.7 39 19-59 126-165 (247)
35 PF13489 Methyltransf_23: Meth 54.8 6.7 0.00015 27.2 1.1 32 8-40 84-117 (161)
36 PRK15068 tRNA mo(5)U34 methylt 52.3 55 0.0012 27.4 6.3 51 18-68 206-277 (322)
37 PRK11188 rrmJ 23S rRNA methylt 51.6 1.1E+02 0.0023 23.9 7.5 58 17-79 144-204 (209)
38 PRK13699 putative methylase; P 49.4 62 0.0013 25.9 6.0 54 12-70 48-103 (227)
39 PLN02232 ubiquinone biosynthes 49.1 30 0.00064 25.6 3.8 23 18-40 61-83 (160)
40 TIGR02716 C20_methyl_CrtF C-20 48.1 51 0.0011 26.6 5.4 20 18-37 234-253 (306)
41 PF12323 HTH_OrfB_IS605: Helix 47.9 23 0.0005 21.4 2.6 20 35-55 6-25 (46)
42 PLN02535 glycolate oxidase 47.5 45 0.00097 29.2 5.2 43 30-72 122-166 (364)
43 PRK11036 putative S-adenosyl-L 46.4 40 0.00088 26.5 4.4 27 18-44 129-155 (255)
44 PRK03612 spermidine synthase; 46.1 54 0.0012 29.4 5.6 42 17-58 394-437 (521)
45 PF11232 Med25: Mediator compl 45.9 88 0.0019 24.7 6.2 60 20-82 63-122 (152)
46 COG1041 Predicted DNA modifica 45.1 20 0.00044 31.6 2.8 54 16-76 288-342 (347)
47 TIGR02752 MenG_heptapren 2-hep 44.0 59 0.0013 24.6 4.9 21 18-38 131-151 (231)
48 TIGR00563 rsmB ribosomal RNA s 44.0 1.2E+02 0.0027 26.1 7.3 36 16-51 346-385 (426)
49 TIGR03704 PrmC_rel_meth putati 43.3 98 0.0021 24.9 6.3 45 17-64 195-239 (251)
50 PRK11197 lldD L-lactate dehydr 41.7 58 0.0013 28.8 5.1 42 30-71 120-163 (381)
51 PRK11873 arsM arsenite S-adeno 41.6 52 0.0011 25.9 4.4 20 18-37 163-182 (272)
52 TIGR01177 conserved hypothetic 41.3 54 0.0012 27.1 4.6 38 16-58 272-309 (329)
53 PRK11524 putative methyltransf 39.9 72 0.0016 25.9 5.1 48 17-68 59-108 (284)
54 PF08306 Glyco_hydro_98M: Glyc 39.0 16 0.00035 32.1 1.3 23 47-69 271-293 (324)
55 PRK06922 hypothetical protein; 38.1 62 0.0013 31.0 5.0 28 18-45 517-546 (677)
56 PF01565 FAD_binding_4: FAD bi 37.4 35 0.00077 23.9 2.6 20 38-57 5-24 (139)
57 PRK10258 biotin biosynthesis p 37.1 44 0.00096 25.9 3.3 38 4-41 104-143 (251)
58 cd02922 FCB2_FMN Flavocytochro 37.0 1.2E+02 0.0026 26.2 6.2 43 29-71 115-159 (344)
59 TIGR00446 nop2p NOL1/NOP2/sun 37.0 1E+02 0.0022 24.8 5.5 39 17-55 178-216 (264)
60 cd02440 AdoMet_MTases S-adenos 36.4 57 0.0012 19.5 3.1 22 16-37 82-103 (107)
61 PTZ00098 phosphoethanolamine N 35.9 46 0.001 26.7 3.3 23 18-40 136-158 (263)
62 PF12847 Methyltransf_18: Meth 35.3 33 0.00071 22.6 2.0 20 18-37 91-110 (112)
63 PRK11705 cyclopropane fatty ac 35.2 40 0.00087 29.0 3.0 32 8-39 234-268 (383)
64 COG0022 AcoB Pyruvate/2-oxoglu 35.0 19 0.0004 31.8 1.0 26 4-36 232-257 (324)
65 PRK01581 speE spermidine synth 34.8 83 0.0018 28.0 5.0 42 16-59 246-291 (374)
66 PLN02493 probable peroxisomal 34.6 86 0.0019 27.6 5.0 42 31-72 121-164 (367)
67 cd01305 archeal_chlorohydrolas 34.6 1.1E+02 0.0025 23.8 5.3 47 23-69 57-103 (263)
68 COG4911 Uncharacterized conser 34.4 59 0.0013 25.2 3.5 58 22-82 31-93 (123)
69 KOG3201|consensus 34.3 91 0.002 25.9 4.8 44 23-67 125-168 (201)
70 PLN02233 ubiquinone biosynthes 33.7 51 0.0011 26.4 3.3 23 18-40 162-184 (261)
71 TIGR02708 L_lactate_ox L-lacta 33.4 86 0.0019 27.6 4.8 41 30-70 131-173 (367)
72 PRK05134 bifunctional 3-demeth 33.0 1.2E+02 0.0027 23.0 5.1 24 18-41 131-154 (233)
73 PF14794 DUF4479: Domain of un 32.9 41 0.00089 23.2 2.3 24 42-65 49-72 (73)
74 TIGR03533 L3_gln_methyl protei 32.2 1.1E+02 0.0024 25.1 5.0 39 16-58 229-267 (284)
75 PLN02490 MPBQ/MSBQ methyltrans 31.5 81 0.0018 27.2 4.3 49 18-66 195-257 (340)
76 TIGR00406 prmA ribosomal prote 30.3 1.2E+02 0.0027 24.6 5.0 38 18-58 239-276 (288)
77 COG3554 Uncharacterized protei 30.2 24 0.00052 29.1 0.8 9 60-68 177-185 (190)
78 PF13659 Methyltransf_26: Meth 28.7 47 0.001 22.1 2.0 25 12-36 89-113 (117)
79 PF01555 N6_N4_Mtase: DNA meth 28.3 1.9E+02 0.0041 21.0 5.2 56 12-68 29-88 (231)
80 PRK14904 16S rRNA methyltransf 28.1 2E+02 0.0044 24.9 6.2 39 16-54 355-393 (445)
81 PLN02336 phosphoethanolamine N 28.0 1.1E+02 0.0024 26.2 4.5 31 10-40 340-371 (475)
82 PRK00536 speE spermidine synth 27.7 51 0.0011 27.5 2.4 21 18-38 151-171 (262)
83 PRK00811 spermidine synthase; 27.6 68 0.0015 26.3 3.1 41 16-56 169-211 (283)
84 TIGR01934 MenG_MenH_UbiE ubiqu 27.0 1.6E+02 0.0034 21.6 4.7 22 18-39 123-144 (223)
85 PLN02979 glycolate oxidase 26.7 1.5E+02 0.0033 26.3 5.2 42 31-72 120-163 (366)
86 TIGR00417 speE spermidine synt 26.4 1.1E+02 0.0023 24.7 4.0 40 17-56 165-206 (270)
87 TIGR00477 tehB tellurite resis 26.3 82 0.0018 24.0 3.1 21 18-38 113-134 (195)
88 PLN02805 D-lactate dehydrogena 26.2 92 0.002 28.6 3.9 33 35-67 135-185 (555)
89 KOG4730|consensus 25.2 86 0.0019 29.4 3.5 41 38-83 54-94 (518)
90 PHA01753 Holliday junction res 24.6 68 0.0015 24.4 2.4 28 42-69 65-95 (121)
91 PF01209 Ubie_methyltran: ubiE 24.4 52 0.0011 26.4 1.8 21 18-38 133-153 (233)
92 PRK11230 glycolate oxidase sub 24.2 1E+02 0.0022 27.7 3.7 20 38-57 60-79 (499)
93 COG2226 UbiE Methylase involve 24.2 67 0.0014 26.6 2.4 39 2-41 118-160 (238)
94 PF06475 Glycolipid_bind: Puta 23.6 32 0.0007 27.2 0.5 10 60-69 166-175 (179)
95 COG2521 Predicted archaeal met 22.6 77 0.0017 27.6 2.6 48 10-59 217-271 (287)
96 PRK13906 murB UDP-N-acetylenol 22.4 1.2E+02 0.0026 25.6 3.6 35 23-57 26-60 (307)
97 PF10354 DUF2431: Domain of un 21.8 2.7E+02 0.0058 21.4 5.2 52 11-66 99-153 (166)
98 COG2207 AraC AraC-type DNA-bin 21.8 1.4E+02 0.003 19.6 3.2 12 48-59 87-98 (127)
99 PLN02366 spermidine synthase 21.8 86 0.0019 26.5 2.7 42 16-58 184-227 (308)
100 cd04736 MDH_FMN Mandelate dehy 21.7 1.6E+02 0.0034 25.9 4.4 41 31-71 115-156 (361)
101 PF13847 Methyltransf_31: Meth 21.6 1.2E+02 0.0025 21.6 3.0 32 18-49 90-121 (152)
102 cd06393 PBP1_iGluR_Kainate_Glu 21.6 1.7E+02 0.0036 24.1 4.3 44 20-64 180-223 (384)
103 PF01564 Spermine_synth: Sperm 21.4 4.4E+02 0.0095 21.2 7.6 43 15-58 168-212 (246)
104 PF02244 Propep_M14: Carboxype 20.8 1.4E+02 0.003 19.1 3.0 21 37-57 2-22 (74)
105 PRK09502 iscA iron-sulfur clus 20.7 81 0.0018 22.3 2.0 14 57-70 83-96 (107)
106 PF15337 Vasculin: Vascular pr 20.5 78 0.0017 23.7 1.9 24 36-59 21-55 (97)
107 PRK11207 tellurite resistance 20.4 1.2E+02 0.0026 23.1 3.0 21 17-37 113-133 (197)
108 PRK14902 16S rRNA methyltransf 20.2 5.7E+02 0.012 22.1 8.7 35 16-50 357-395 (444)
No 1
>KOG1541|consensus
Probab=100.00 E-value=2.6e-39 Score=267.35 Aligned_cols=87 Identities=57% Similarity=0.858 Sum_probs=80.6
Q ss_pred ccchhhHHHHHHH-------------HHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEeeCCCCCCc
Q psy17721 6 LRSISKAQFSLKQ-------------ISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVVDYPHSTKA 72 (130)
Q Consensus 6 ~~svs~~qw~l~~-------------~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVVD~PnS~KA 72 (130)
..|||+.|| ||| +||+|||.||+||+||||||||||++|+|||+.+||+|||+||||||||+|+|+
T Consensus 116 ~ISISAvQW-LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~ 194 (270)
T KOG1541|consen 116 VISISAVQW-LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKN 194 (270)
T ss_pred EEEeeeeee-ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeeccccccc
Confidence 359999999 885 899999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCccCCCC
Q psy17721 73 KKFFLVLMTGGDLPLPPALGEGE 95 (130)
Q Consensus 73 KK~yLvL~~G~~~~lp~~l~~~~ 95 (130)
||+||||++|+. +|+.++.++
T Consensus 195 kK~yLVL~~g~~--~~~~l~~~~ 215 (270)
T KOG1541|consen 195 KKYYLVLMTGGV--VPRALTAGG 215 (270)
T ss_pred ceeEEEEecCCc--ccccccCCc
Confidence 999999999976 677775443
No 2
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=88.06 E-value=2.9 Score=31.34 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcccCceeEEEEcc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYP 40 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYP 40 (130)
+.++..++.+|++||+.++..++
T Consensus 126 ~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 126 ELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHccCCCEEEEEEcc
Confidence 67899999999999999997654
No 3
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=86.08 E-value=2.3 Score=32.17 Aligned_cols=61 Identities=11% Similarity=-0.028 Sum_probs=40.7
Q ss_pred chhhHHHHHH--HHHHHHHHhhcccCceeEEEEccC------CHH-------HHHHHHHHHHHccccceEEeeCCCC
Q psy17721 8 SISKAQFSLK--QISHLRLFTRLSRTARAVFQFYPE------NSA-------QIELVTSQAMRAGFYGGLVVDYPHS 69 (130)
Q Consensus 8 svs~~qw~l~--~~FF~SLY~~L~rGaRAVlQFYPE------n~~-------Q~EmIt~aA~kaGF~GGlVVD~PnS 69 (130)
++.++.+ +. ..+|..+++.|++||+.+++-... +.+ -.+-+...+.++||...-++|...+
T Consensus 73 ~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 73 GFEVIHH-IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred hHHHHHh-CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 4445554 22 589999999999999999985321 110 0234556777899988777776444
No 4
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=83.69 E-value=2.6 Score=32.03 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY 59 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~ 59 (130)
..|+..++++|++||+.++.. +..|.+.+.+...++||.
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~---~~~~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEI---GYDQGEAVRALFEAAGFA 235 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEE---CccHHHHHHHHHHhCCCC
Confidence 478899999999999999976 346778888888999995
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=83.24 E-value=0.75 Score=28.97 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=23.9
Q ss_pred cchhhHHHH-HHHHHHHHHHhhcccCceeEE
Q psy17721 7 RSISKAQFS-LKQISHLRLFTRLSRTARAVF 36 (130)
Q Consensus 7 ~svs~~qw~-l~~~FF~SLY~~L~rGaRAVl 36 (130)
.+.+.++|. =.+.++..+++.||+||+.|+
T Consensus 65 ~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 65 FSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 355677774 236899999999999999986
No 6
>PF12589 WBS_methylT: Methyltransferase involved in Williams-Beuren syndrome; InterPro: IPR022238 This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with PF08241 from PFAM. This family is made up of S-adenosylmethionine-dependent methyltransferases []. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype [].
Probab=81.80 E-value=0.77 Score=32.65 Aligned_cols=17 Identities=47% Similarity=0.804 Sum_probs=13.1
Q ss_pred EEeCCC---CCCCCccCCCC
Q psy17721 79 LMTGGD---LPLPPALGEGE 95 (130)
Q Consensus 79 L~~G~~---~~lp~~l~~~~ 95 (130)
||||++ ..||+++++++
T Consensus 1 L~~G~~~~~~~lP~~l~~~~ 20 (87)
T PF12589_consen 1 LFAGGPGVPQQLPKGLGEEG 20 (87)
T ss_pred CccCCCCCcccCCccCCccc
Confidence 688953 78999998653
No 7
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=81.29 E-value=4 Score=31.29 Aligned_cols=41 Identities=10% Similarity=-0.083 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGF 58 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF 58 (130)
..+++.+++.|++||+.++..-|....+++-+...+...||
T Consensus 122 ~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~ 162 (181)
T TIGR00138 122 NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV 162 (181)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence 46788999999999999999988888888877766655555
No 8
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=79.01 E-value=4.9 Score=31.85 Aligned_cols=40 Identities=20% Similarity=0.061 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY 59 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~ 59 (130)
..++..++++|++||+.|++-.- .+|.+.+..+..+.||.
T Consensus 193 ~~l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 193 LELAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFT 232 (250)
T ss_pred HHHHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCE
Confidence 46788999999999999998543 45778888888999985
No 9
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=78.37 E-value=3.5 Score=34.91 Aligned_cols=33 Identities=18% Similarity=0.033 Sum_probs=25.4
Q ss_pred ccc-chhhHHHHHH--HHHHHHHHhhcccCceeEEEE
Q psy17721 5 DLR-SISKAQFSLK--QISHLRLFTRLSRTARAVFQF 38 (130)
Q Consensus 5 ~~~-svs~~qw~l~--~~FF~SLY~~L~rGaRAVlQF 38 (130)
|++ +..++.| +. ..++..+|++|++||+-|+..
T Consensus 190 D~V~s~gvL~H-~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 190 DTVFSMGVLYH-RKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CEEEEcchhhc-cCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 444 5556666 33 479999999999999999984
No 10
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=78.28 E-value=7.6 Score=28.75 Aligned_cols=48 Identities=13% Similarity=-0.085 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEeeC
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVVDY 66 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVVD~ 66 (130)
.+.|+..+++.|++||+.++-.... .|.+.+.....++||.--++-++
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~--~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSL--NGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEecc--CChHHHHHHHHhCCCeEEEEEEe
Confidence 5789999999999999988855332 34556667778899976666554
No 11
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=77.92 E-value=4.7 Score=31.42 Aligned_cols=36 Identities=6% Similarity=-0.150 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRA 56 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~ka 56 (130)
+.|+..+|..|++||+.++..-+..... +.++++--
T Consensus 125 ~~~l~~~~~~LkpGG~lv~~~~~~~~~~---l~~~~~~~ 160 (187)
T PRK00107 125 SDLVELCLPLLKPGGRFLALKGRDPEEE---IAELPKAL 160 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCChHHH---HHHHHHhc
Confidence 6899999999999999999975543333 44444444
No 12
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=76.67 E-value=8.4 Score=29.23 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY 59 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~ 59 (130)
..++..+++.|++||+.|+.. -+.++++.+.....+.||.
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~--~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDA--ILLETVNNALSALENIGFN 164 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEe--ecHHHHHHHHHHHHHcCCC
Confidence 467889999999999999744 4678888888888899994
No 13
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=75.30 E-value=26 Score=27.26 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEe
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVV 64 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVV 64 (130)
...++...+..|++||+.++.. +..|.+.+.....+.||. .+.+
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~e~---g~~~~~~~~~~l~~~gf~-~v~~ 260 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLLEI---GYDQGEAVRALLAAAGFA-DVET 260 (275)
T ss_pred HHHHHHHHHHhcccCCEEEEEE---CchHHHHHHHHHHhCCCc-eeEE
Confidence 3578888899999999999966 446777777777789997 4444
No 14
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=75.29 E-value=3.1 Score=32.36 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=25.7
Q ss_pred chhhHHHHH-HHHHHHHHHhhcccCceeEEEEccCC
Q psy17721 8 SISKAQFSL-KQISHLRLFTRLSRTARAVFQFYPEN 42 (130)
Q Consensus 8 svs~~qw~l-~~~FF~SLY~~L~rGaRAVlQFYPEn 42 (130)
+...++|.- ...++..++++|++||+.++++ |.+
T Consensus 99 ~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~-~~~ 133 (258)
T PRK01683 99 ANASLQWLPDHLELFPRLVSLLAPGGVLAVQM-PDN 133 (258)
T ss_pred EccChhhCCCHHHHHHHHHHhcCCCcEEEEEC-CCC
Confidence 345567731 2589999999999999999996 443
No 15
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=75.18 E-value=5 Score=34.18 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=29.8
Q ss_pred ccchhhHHHHHH---HHHHHHHHhhcccCceeEEEEccCCH
Q psy17721 6 LRSISKAQFSLK---QISHLRLFTRLSRTARAVFQFYPENS 43 (130)
Q Consensus 6 ~~svs~~qw~l~---~~FF~SLY~~L~rGaRAVlQFYPEn~ 43 (130)
++||-|.+-.=. ..||+..|++|++||+.++|--+...
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 567777776322 59999999999999999999766544
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=72.45 E-value=3.6 Score=33.90 Aligned_cols=22 Identities=18% Similarity=0.085 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcccCceeEEEEc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFY 39 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFY 39 (130)
..||..+++.|++||++++|.-
T Consensus 146 ~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 146 PAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp HHHHHHHHHHSETTEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEec
Confidence 5899999999999999999953
No 17
>PRK14968 putative methyltransferase; Provisional
Probab=72.16 E-value=24 Score=25.41 Aligned_cols=43 Identities=12% Similarity=-0.047 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccce
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGG 61 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GG 61 (130)
.+.|+..++..|++||+.++.. |. ..+.+-+.....++||.--
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~-~~-~~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQ-SS-LTGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEE-cc-cCCHHHHHHHHHHCCCeee
Confidence 4678999999999999887754 32 3345666778888898643
No 18
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=71.86 E-value=9 Score=32.54 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc
Q psy17721 19 ISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY 59 (130)
Q Consensus 19 ~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~ 59 (130)
..-..++..|++||++|+ |--+.+|++-+..+..+.||.
T Consensus 176 ~~le~~~~~Lkpgg~~~~--y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 176 NVLEHVSDALKPGGVVVV--YSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred HHHHHHHHHhCCCcEEEE--EcCCHHHHHHHHHHHHhcCcc
Confidence 667899999999987775 767999999999998888885
No 19
>PRK08317 hypothetical protein; Provisional
Probab=69.45 E-value=15 Score=26.98 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcccCceeEEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQF 38 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQF 38 (130)
+.++..++.+|++||+-++..
T Consensus 104 ~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 104 ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred HHHHHHHHHHhcCCcEEEEEe
Confidence 578999999999999998754
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=65.68 E-value=15 Score=29.04 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=28.4
Q ss_pred hhHHHH---HHHHHHHHHHhhcccCceeEEE--EccCCHHHHHHHH
Q psy17721 10 SKAQFS---LKQISHLRLFTRLSRTARAVFQ--FYPENSAQIELVT 50 (130)
Q Consensus 10 s~~qw~---l~~~FF~SLY~~L~rGaRAVlQ--FYPEn~~Q~EmIt 50 (130)
..++++ -.+.++..+|++|++||+-++. +-++++.--+++.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~ 178 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLF 178 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHH
Confidence 445662 1368999999999999999996 4455554444443
No 21
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=65.22 E-value=18 Score=27.76 Aligned_cols=41 Identities=10% Similarity=-0.008 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY 59 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~ 59 (130)
.+.|+..+++.|++||+-++.. .+.++.+-+...+.+.|+-
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFAT--DWEGYAEYMLEVLSAEGGF 175 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEc--CCHHHHHHHHHHHHhCccc
Confidence 4679999999999999998875 4678887888888888863
No 22
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=65.06 E-value=6.7 Score=29.45 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcccCceeEEEEcc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYP 40 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYP 40 (130)
..||..+|+.|++||+-|+.-=|
T Consensus 24 ~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE---
T ss_pred HHHHHHHHHhhCCCCEEEEeCCC
Confidence 38999999999999999997655
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=65.05 E-value=11 Score=29.02 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEE
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLV 63 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlV 63 (130)
+.+.|+...+..|++||+.++- +++ ..+.+.+.+...+.||.=...
T Consensus 137 ~~~~~l~~a~~~Lk~gG~l~~~-~~~-~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 137 VLDRLCDAAPALLAPGGSLLLV-QSE-LSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred HHHHHHHHHHHhcCCCcEEEEE-Eec-ccCHHHHHHHHHHCCCCeEEE
Confidence 3578999999999999998863 232 224445556666778764444
No 24
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=64.46 E-value=19 Score=26.75 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcccCceeEEEE-ccCCHHHHHHHHHHHHHccccceEEeeC
Q psy17721 18 QISHLRLFTRLSRTARAVFQF-YPENSAQIELVTSQAMRAGFYGGLVVDY 66 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQF-YPEn~~Q~EmIt~aA~kaGF~GGlVVD~ 66 (130)
..++..++..|++||+.++.. -+++. +.+.....+.||.---+..+
T Consensus 111 ~~~l~~~~~~Lk~gG~lv~~~~~~~~~---~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 111 TAIIDWSLAHLHPGGRLVLTFILLENL---HSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecHhhH---HHHHHHHHHCCCCcceEEEE
Confidence 457889999999999999975 33333 44556778899964444344
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=61.70 E-value=16 Score=28.29 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=28.6
Q ss_pred chhhHHHHH---HHHHHHHHHhhcccCceeEEE--EccCCHHHHHH
Q psy17721 8 SISKAQFSL---KQISHLRLFTRLSRTARAVFQ--FYPENSAQIEL 48 (130)
Q Consensus 8 svs~~qw~l---~~~FF~SLY~~L~rGaRAVlQ--FYPEn~~Q~Em 48 (130)
+..+++|.- .+.++..+|+.|++||+-++. +.+++....+.
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~ 173 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL 173 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH
Confidence 335567731 368999999999999999998 44555443333
No 26
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=61.56 E-value=21 Score=27.15 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAG 57 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaG 57 (130)
..|+..+++.|++||+-.++. .+....+-+.......|
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT--DNEPLFEDMLKVLSEND 149 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHhCC
Confidence 579999999999999988876 45556666656555544
No 27
>PRK04457 spermidine synthase; Provisional
Probab=61.36 E-value=32 Score=27.93 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEeeCC
Q psy17721 13 QFSLKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVVDYP 67 (130)
Q Consensus 13 qw~l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVVD~P 67 (130)
.++....||+.+.++|++||+-++++...++...+.|. +++.-|.+ .++-+|
T Consensus 152 ~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~--~l~~~F~~-~~~~~~ 203 (262)
T PRK04457 152 DALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLE--RLESSFEG-RVLELP 203 (262)
T ss_pred cccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHH--HHHHhcCC-cEEEEe
Confidence 34334799999999999999999998876665444443 45556864 333344
No 28
>PRK07402 precorrin-6B methylase; Provisional
Probab=61.20 E-value=35 Score=25.67 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEe
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVV 64 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVV 64 (130)
+.++..++..|++||+.++..+ +.+++..+.+...+.+..|.-++
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 166 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATAS--SLEGLYAISEGLAQLQARNIEVV 166 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEee--cHHHHHHHHHHHHhcCCCCceEE
Confidence 5778999999999999998875 35566666666666566554443
No 29
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=61.18 E-value=50 Score=28.52 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcccCceeEEEEc----cCCHHHHHHHH
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFY----PENSAQIELVT 50 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFY----PEn~~Q~EmIt 50 (130)
++..++.+.+..|++||+-|+--. .||.++++-..
T Consensus 350 ~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l 388 (427)
T PRK10901 350 LQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFL 388 (427)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHH
Confidence 456889999999999999996544 57777666554
No 30
>PLN02244 tocopherol O-methyltransferase
Probab=61.17 E-value=18 Score=30.25 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcccCceeEEEEcc------CC----HHH------------------HHHHHHHHHHccccceEEeeCCCC
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYP------EN----SAQ------------------IELVTSQAMRAGFYGGLVVDYPHS 69 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYP------En----~~Q------------------~EmIt~aA~kaGF~GGlVVD~PnS 69 (130)
..+|..++.+|++||+-|+.-+. .. +.+ .+-+...+..+||..=-+.|+...
T Consensus 203 ~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 203 RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 57999999999999999987432 11 111 334556688899987777777655
No 31
>PRK04266 fibrillarin; Provisional
Probab=60.35 E-value=62 Score=25.89 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcccCceeEEEEccCC------HHH-HHHHHHHHHHccccceEEeeCCCCCCcceEEEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPEN------SAQ-IELVTSQAMRAGFYGGLVVDYPHSTKAKKFFLVL 79 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn------~~Q-~EmIt~aA~kaGF~GGlVVD~PnS~KAKK~yLvL 79 (130)
++++..++..|++||+.|+.++-.+ +.+ .+-..+....+||.---++|.+.- .+-+|.++
T Consensus 156 ~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~--~~~h~~~v 222 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPY--HKDHAAVV 222 (226)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC--cCCeEEEE
Confidence 4678899999999999999766211 111 111237777889997777776322 22455443
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=59.94 E-value=3.6 Score=27.16 Aligned_cols=27 Identities=4% Similarity=-0.121 Sum_probs=17.5
Q ss_pred cchhhHHHH-HHHHHHHHHHhhcccCce
Q psy17721 7 RSISKAQFS-LKQISHLRLFTRLSRTAR 33 (130)
Q Consensus 7 ~svs~~qw~-l~~~FF~SLY~~L~rGaR 33 (130)
+++++++|+ =.+.++..++++|++||+
T Consensus 71 ~~~~vl~~l~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 71 VASNVLHHLEDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp EEE-TTS--S-HHHHHHHHTTT-TSS-E
T ss_pred hhhhhHhhhhhHHHHHHHHHHHcCCCCC
Confidence 467888884 125899999999999996
No 33
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=57.91 E-value=11 Score=29.51 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=24.7
Q ss_pred chhhHHHH-HHHHHHHHHHhhcccCceeEEEEc
Q psy17721 8 SISKAQFS-LKQISHLRLFTRLSRTARAVFQFY 39 (130)
Q Consensus 8 svs~~qw~-l~~~FF~SLY~~L~rGaRAVlQFY 39 (130)
+..+++|. -...++..+|+.|++||+.++++.
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 44566773 125789999999999999999864
No 34
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=55.61 E-value=16 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHHHhhc-ccCceeEEEEccCCHHHHHHHHHHHHHcccc
Q psy17721 19 ISHLRLFTRL-SRTARAVFQFYPENSAQIELVTSQAMRAGFY 59 (130)
Q Consensus 19 ~FF~SLY~~L-~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~ 59 (130)
..-..++.+| ++||+.|. |=| +-+|++....+..+.||.
T Consensus 126 ~~i~~~~~~L~~~gG~i~~-fsP-~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 126 EAIPHAKRALKKPGGRICC-FSP-CIEQVQKTVEALREHGFT 165 (247)
T ss_dssp GGHHHHHHHE-EEEEEEEE-EES-SHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhcCCceEEE-ECC-CHHHHHHHHHHHHHCCCe
Confidence 3456889999 88988775 444 999999999999999985
No 35
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=54.75 E-value=6.7 Score=27.18 Aligned_cols=32 Identities=13% Similarity=-0.133 Sum_probs=25.2
Q ss_pred chhhHHHHHH--HHHHHHHHhhcccCceeEEEEcc
Q psy17721 8 SISKAQFSLK--QISHLRLFTRLSRTARAVFQFYP 40 (130)
Q Consensus 8 svs~~qw~l~--~~FF~SLY~~L~rGaRAVlQFYP 40 (130)
+..+++| +. ..++..|++.|++||+.++..--
T Consensus 84 ~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 84 CNDVLEH-LPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EESSGGG-SSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hHHHHhh-cccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4456666 43 58899999999999999998754
No 36
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=52.27 E-value=55 Score=27.41 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcccCceeEEEE--c---------cCCH-H---------HHHHHHHHHHHccccceEEeeCCC
Q psy17721 18 QISHLRLFTRLSRTARAVFQF--Y---------PENS-A---------QIELVTSQAMRAGFYGGLVVDYPH 68 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQF--Y---------PEn~-~---------Q~EmIt~aA~kaGF~GGlVVD~Pn 68 (130)
..++..+|++|++||+.|+.- . |+.. . -.+.+.+...++||.-=-++|...
T Consensus 206 ~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 206 LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 478999999999999999973 1 2110 0 134567888999998666666544
No 37
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=51.64 E-value=1.1e+02 Score=23.91 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcccCceeEEE-EccCCHHHHHHHHHHHHHccccceEEeeCCCCCCcc--eEEEEE
Q psy17721 17 KQISHLRLFTRLSRTARAVFQ-FYPENSAQIELVTSQAMRAGFYGGLVVDYPHSTKAK--KFFLVL 79 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQ-FYPEn~~Q~EmIt~aA~kaGF~GGlVVD~PnS~KAK--K~yLvL 79 (130)
.+..+...+..|++||+-|+= |.++.-.+. + ..++..|. .+.|--|.|.|.. ..|+|.
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~--l--~~l~~~f~-~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQGEGFDEY--L--REIRSLFT-KVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecCcCHHHH--H--HHHHhCce-EEEEECCccccccCceeEEEe
Confidence 467889999999999999994 445444443 2 45666776 3555677776653 345543
No 38
>PRK13699 putative methylase; Provisional
Probab=49.41 E-value=62 Score=25.86 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc--ceEEeeCCCCC
Q psy17721 12 AQFSLKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY--GGLVVDYPHST 70 (130)
Q Consensus 12 ~qw~l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~--GGlVVD~PnS~ 70 (130)
.+| .+.+|..+|+.|++|+.-+. |+. ..+..-+..+..++||. +-+|=+-++..
T Consensus 48 ~ew--~~~~l~E~~RVLKpgg~l~i-f~~--~~~~~~~~~al~~~GF~l~~~IiW~K~~~~ 103 (227)
T PRK13699 48 DEW--LQPACNEMYRVLKKDALMVS-FYG--WNRVDRFMAAWKNAGFSVVGHLVFTKNYTS 103 (227)
T ss_pred HHH--HHHHHHHHHHHcCCCCEEEE-Eec--cccHHHHHHHHHHCCCEEeeEEEEECCCCC
Confidence 366 46789999999999987765 443 33455566777889995 77888877654
No 39
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=49.08 E-value=30 Score=25.63 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcccCceeEEEEcc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYP 40 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYP 40 (130)
+.++..++++|++||+-++--+.
T Consensus 61 ~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 61 LRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred HHHHHHHHHHcCcCeEEEEEECC
Confidence 58899999999999999887443
No 40
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=48.11 E-value=51 Score=26.59 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcccCceeEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQ 37 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQ 37 (130)
...|..+|++|++|||-++.
T Consensus 234 ~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 234 TIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 46899999999999999888
No 41
>PF12323 HTH_OrfB_IS605: Helix-turn-helix domain; InterPro: IPR021027 This entry represents an N-terminal helix-turn-helix domain found in a variety of putative transposases [, , ]. It is usually associated with PF01385 from PFAM and PF07282 from PFAM.
Probab=47.91 E-value=23 Score=21.45 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=15.4
Q ss_pred EEEEccCCHHHHHHHHHHHHH
Q psy17721 35 VFQFYPENSAQIELVTSQAMR 55 (130)
Q Consensus 35 VlQFYPEn~~Q~EmIt~aA~k 55 (130)
-+.+|| |++|.+.|...+--
T Consensus 6 k~rl~P-t~~Q~~~L~~~~~~ 25 (46)
T PF12323_consen 6 KYRLYP-TKEQEEKLERWFGA 25 (46)
T ss_pred EEEEec-CHHHHHHHHHHHHH
Confidence 367899 89999998776543
No 42
>PLN02535 glycolate oxidase
Probab=47.51 E-value=45 Score=29.22 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=34.0
Q ss_pred cCceeEEEEcc-CCHHHHHHHHHHHHHcccc-ceEEeeCCCCCCc
Q psy17721 30 RTARAVFQFYP-ENSAQIELVTSQAMRAGFY-GGLVVDYPHSTKA 72 (130)
Q Consensus 30 rGaRAVlQFYP-En~~Q~EmIt~aA~kaGF~-GGlVVD~PnS~KA 72 (130)
.++..-||+|+ .+.+-++-+...|-++||. =.|-||-|...+.
T Consensus 122 ~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R 166 (364)
T PLN02535 122 CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRR 166 (364)
T ss_pred CCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCc
Confidence 35689999997 5577788888999999997 4666888876543
No 43
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=46.37 E-value=40 Score=26.45 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHH
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSA 44 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~ 44 (130)
+.++..+++.|++||+-++.+|..+..
T Consensus 129 ~~~l~~~~~~LkpgG~l~i~~~n~~~~ 155 (255)
T PRK11036 129 KSVLQTLWSVLRPGGALSLMFYNANGL 155 (255)
T ss_pred HHHHHHHHHHcCCCeEEEEEEECccHH
Confidence 478999999999999999999986643
No 44
>PRK03612 spermidine synthase; Provisional
Probab=46.06 E-value=54 Score=29.37 Aligned_cols=42 Identities=17% Similarity=0.001 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcccCceeEEEEccC--CHHHHHHHHHHHHHccc
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPE--NSAQIELVTSQAMRAGF 58 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPE--n~~Q~EmIt~aA~kaGF 58 (130)
.+.||+.+++.|++||+-|+|--+. ..+....|.+...++||
T Consensus 394 t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 394 SVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred hHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 4679999999999999999995322 24555667788888899
No 45
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=45.87 E-value=88 Score=24.74 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEeeCCCCCCcceEEEEEEeC
Q psy17721 20 SHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVVDYPHSTKAKKFFLVLMTG 82 (130)
Q Consensus 20 FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVVD~PnS~KAKK~yLvL~~G 82 (130)
.+..|=.-. +.+|. ++|-+.++.+.---....|..||.|.|-+-. +....=|..+.|++-
T Consensus 63 lL~~i~~~~-kns~~-v~f~~~~~~E~l~~L~~im~ng~~GcvhF~~-~p~c~iKvL~LlYs~ 122 (152)
T PF11232_consen 63 LLGNIGGLF-KNSRS-VVFHFTTDCESLKSLYRIMSNGFAGCVHFSS-NPPCEIKVLMLLYSP 122 (152)
T ss_dssp HHGGGGGGG-SSEEE-EEEEESS-HHHHHHHHHHHHCCEEEEEE--S-TSSSS-SEEEEEEET
T ss_pred HHHHHHHHH-hcCeE-EEEEcCCChHHHHHHHHHhcCCeEEEEEcCC-CCCCceEEEEEEEcC
Confidence 333443444 67887 5666654554444446788999988887732 233344555556544
No 46
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=45.10 E-value=20 Score=31.60 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc-ceEEeeCCCCCCcceEE
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY-GGLVVDYPHSTKAKKFF 76 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~-GGlVVD~PnS~KAKK~y 76 (130)
|...||++++..|++||++||= .| ......+..+||. =|.+..|-|...-+-+|
T Consensus 288 Ly~~~le~~~evLk~gG~~vf~-~p------~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i~ 342 (347)
T COG1041 288 LYEEALESASEVLKPGGRIVFA-AP------RDPRHELEELGFKVLGRFTMRVHGSLTRVIY 342 (347)
T ss_pred HHHHHHHHHHHHhhcCcEEEEe-cC------CcchhhHhhcCceEEEEEEEeecCceEEEEE
Confidence 6689999999999999999993 33 2223566788995 78888887776655555
No 47
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=44.04 E-value=59 Score=24.61 Aligned_cols=21 Identities=5% Similarity=-0.023 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcccCceeEEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQF 38 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQF 38 (130)
..++..+++.|++||+.+++-
T Consensus 131 ~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 131 MQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHHHHHHcCcCeEEEEEE
Confidence 467888999999999999864
No 48
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=44.03 E-value=1.2e+02 Score=26.07 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcccCceeEEE---Ecc-CCHHHHHHHHH
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQ---FYP-ENSAQIELVTS 51 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQ---FYP-En~~Q~EmIt~ 51 (130)
++...+...+..|++||+-|.. +.| ||.+|++-+..
T Consensus 346 lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 346 LQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 5568889999999999999976 555 78888876665
No 49
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=43.34 E-value=98 Score=24.88 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEe
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVV 64 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVV 64 (130)
...++......|++||+.++=.= .+|.+.+.+...+.||...++.
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~---~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETS---ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC---cchHHHHHHHHHHCCCCceeeE
Confidence 35778888899999999998754 4577788888888999887765
No 50
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=41.67 E-value=58 Score=28.75 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=32.7
Q ss_pred cCceeEEEEc-cCCHHHHHHHHHHHHHcccc-ceEEeeCCCCCC
Q psy17721 30 RTARAVFQFY-PENSAQIELVTSQAMRAGFY-GGLVVDYPHSTK 71 (130)
Q Consensus 30 rGaRAVlQFY-PEn~~Q~EmIt~aA~kaGF~-GGlVVD~PnS~K 71 (130)
.++..-||+| |.+.+-++-+.+.|-+|||. =.|-||=|-..+
T Consensus 120 ~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~ 163 (381)
T PRK11197 120 IKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGA 163 (381)
T ss_pred cCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Confidence 3567899999 66677788888999999997 456688775543
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=41.58 E-value=52 Score=25.90 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcccCceeEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQ 37 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQ 37 (130)
...|..+|++|++||+.++-
T Consensus 163 ~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 163 ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 46799999999999999985
No 52
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=41.35 E-value=54 Score=27.08 Aligned_cols=38 Identities=21% Similarity=0.049 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccc
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGF 58 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF 58 (130)
+...++..+++.|++|||.|+-+ |...+-. ..+..+||
T Consensus 272 l~~~~l~~~~r~Lk~gG~lv~~~-~~~~~~~----~~~~~~g~ 309 (329)
T TIGR01177 272 LYERSLEEFHEVLKSEGWIVYAV-PTRIDLE----SLAEDAFR 309 (329)
T ss_pred HHHHHHHHHHHHccCCcEEEEEE-cCCCCHH----HHHhhcCc
Confidence 45789999999999999999965 5433222 34666888
No 53
>PRK11524 putative methyltransferase; Provisional
Probab=39.88 E-value=72 Score=25.91 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcccc--ceEEeeCCC
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFY--GGLVVDYPH 68 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~--GGlVVD~Pn 68 (130)
.+.+|..++..|++||+.++-..+ .++. ....+++.||. +-++-+.++
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~---~~~~-~~~~~~~~~f~~~~~iiW~k~~ 108 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNST---ENMP-FIDLYCRKLFTIKSRIVWSYDS 108 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCc---hhhh-HHHHHHhcCcceEEEEEEEeCC
Confidence 467899999999999999985333 2333 34667888884 888888754
No 54
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=39.05 E-value=16 Score=32.08 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.1
Q ss_pred HHHHHHHHHccccceEEeeCCCC
Q psy17721 47 ELVTSQAMRAGFYGGLVVDYPHS 69 (130)
Q Consensus 47 EmIt~aA~kaGF~GGlVVD~PnS 69 (130)
-||.-+||+..+.||.|+|+|+-
T Consensus 271 a~~~~E~~~v~l~G~tvyd~~~~ 293 (324)
T PF08306_consen 271 AMIGMEMMHVYLNGGTVYDGPEL 293 (324)
T ss_dssp HHHHHHHHHHHTTT--EEEEESH
T ss_pred chhHHhhhheeecCeeEecCCcc
Confidence 46777899999999999999974
No 55
>PRK06922 hypothetical protein; Provisional
Probab=38.08 E-value=62 Score=31.03 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcccCceeEEEE--ccCCHHH
Q psy17721 18 QISHLRLFTRLSRTARAVFQF--YPENSAQ 45 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQF--YPEn~~Q 45 (130)
..++..+|..|++||+.++.= +|++.+-
T Consensus 517 ~kiLreI~RVLKPGGrLII~D~v~~E~~~l 546 (677)
T PRK06922 517 KKGLQSAYEVLKPGGRIIIRDGIMTEDKRL 546 (677)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCccCCchhH
Confidence 588999999999999999983 6766543
No 56
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=37.38 E-value=35 Score=23.89 Aligned_cols=20 Identities=15% Similarity=0.332 Sum_probs=18.1
Q ss_pred EccCCHHHHHHHHHHHHHcc
Q psy17721 38 FYPENSAQIELVTSQAMRAG 57 (130)
Q Consensus 38 FYPEn~~Q~EmIt~aA~kaG 57 (130)
+||++.+|+..|.+.|.+.|
T Consensus 5 v~P~s~~ev~~~v~~a~~~~ 24 (139)
T PF01565_consen 5 VRPKSVEEVQAIVKFANENG 24 (139)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EEeCCHHHHHHHHHHHHHcC
Confidence 58999999999999999765
No 57
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=37.12 E-value=44 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=27.6
Q ss_pred ccc-cchhhHHHH-HHHHHHHHHHhhcccCceeEEEEccC
Q psy17721 4 LDL-RSISKAQFS-LKQISHLRLFTRLSRTARAVFQFYPE 41 (130)
Q Consensus 4 ~~~-~svs~~qw~-l~~~FF~SLY~~L~rGaRAVlQFYPE 41 (130)
.|+ .|...+||. =...++..++++|++||+.++-...+
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 344 345678883 12578999999999999999876554
No 58
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=37.05 E-value=1.2e+02 Score=26.16 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=33.4
Q ss_pred ccCceeEEEEc-cCCHHHHHHHHHHHHHcccc-ceEEeeCCCCCC
Q psy17721 29 SRTARAVFQFY-PENSAQIELVTSQAMRAGFY-GGLVVDYPHSTK 71 (130)
Q Consensus 29 ~rGaRAVlQFY-PEn~~Q~EmIt~aA~kaGF~-GGlVVD~PnS~K 71 (130)
.+++...||+| |.+.+-++-+...|.++||. =.|-||-|...+
T Consensus 115 ~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~ 159 (344)
T cd02922 115 PPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGK 159 (344)
T ss_pred CCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCc
Confidence 45677889999 56777788888999999996 466678886643
No 59
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=37.01 E-value=1e+02 Score=24.77 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHH
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMR 55 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~k 55 (130)
+...+...+..|++||+-|..-.--++++-|.++..+++
T Consensus 178 q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 178 QKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence 345788889999999999988554444444444444443
No 60
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=36.40 E-value=57 Score=19.49 Aligned_cols=22 Identities=9% Similarity=-0.266 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcccCceeEEE
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQ 37 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQ 37 (130)
..+.++..+...|++||+.++.
T Consensus 82 ~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 82 DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred HHHHHHHHHHHHcCCCCEEEEE
Confidence 3468889999999999999987
No 61
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=35.90 E-value=46 Score=26.75 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcccCceeEEEEcc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYP 40 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYP 40 (130)
+.+|..+++.|++||+.|+.-|.
T Consensus 136 ~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 136 KKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHHHHcCCCcEEEEEEec
Confidence 57999999999999999998763
No 62
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=35.33 E-value=33 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcccCceeEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQ 37 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQ 37 (130)
+.++..++..|++||+-|+.
T Consensus 91 ~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 91 RRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 57899999999999998874
No 63
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=35.18 E-value=40 Score=29.02 Aligned_cols=32 Identities=6% Similarity=-0.104 Sum_probs=25.0
Q ss_pred chhhHHHH-H--HHHHHHHHHhhcccCceeEEEEc
Q psy17721 8 SISKAQFS-L--KQISHLRLFTRLSRTARAVFQFY 39 (130)
Q Consensus 8 svs~~qw~-l--~~~FF~SLY~~L~rGaRAVlQFY 39 (130)
|+.++++. . .+.+|..+++.|++||+.++|..
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 55566652 1 25899999999999999999964
No 64
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=35.03 E-value=19 Score=31.77 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=24.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhcccCceeEE
Q psy17721 4 LDLRSISKAQFSLKQISHLRLFTRLSRTARAVF 36 (130)
Q Consensus 4 ~~~~svs~~qw~l~~~FF~SLY~~L~rGaRAVl 36 (130)
+|||+++++.| +|+-++.++.||+|+
T Consensus 232 IDLRTl~PlD~-------etIi~SvkKTgR~vi 257 (324)
T COG0022 232 IDLRTLSPLDK-------ETIIASVKKTGRLVI 257 (324)
T ss_pred EeccccCccCH-------HHHHHHHHhhCcEEE
Confidence 69999999999 899999999999987
No 65
>PRK01581 speE spermidine synthase; Validated
Probab=34.75 E-value=83 Score=28.03 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcccCceeEEEEccCCHHHH----HHHHHHHHHcccc
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYPENSAQI----ELVTSQAMRAGFY 59 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~----EmIt~aA~kaGF~ 59 (130)
....||..+++.|++||.-|.| .+++... ..|.+.-.++||.
T Consensus 246 yT~EFy~~~~~~LkPgGV~V~Q--s~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 246 YTSELFARIATFLTEDGAFVCQ--SNSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred hHHHHHHHHHHhcCCCcEEEEe--cCChhhhHHHHHHHHHHHHHhCCc
Confidence 4478999999999999999999 3444332 3355555666664
No 66
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=34.57 E-value=86 Score=27.60 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=32.3
Q ss_pred CceeEEEEc-cCCHHHHHHHHHHHHHcccc-ceEEeeCCCCCCc
Q psy17721 31 TARAVFQFY-PENSAQIELVTSQAMRAGFY-GGLVVDYPHSTKA 72 (130)
Q Consensus 31 GaRAVlQFY-PEn~~Q~EmIt~aA~kaGF~-GGlVVD~PnS~KA 72 (130)
++..-||+| +.+.+-.+-+...|.++||. =.|-||=|...+.
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R 164 (367)
T PLN02493 121 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRR 164 (367)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcc
Confidence 467899999 45666777888999999997 4566888887433
No 67
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=34.56 E-value=1.1e+02 Score=23.83 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=38.5
Q ss_pred HHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEeeCCCC
Q psy17721 23 RLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVVDYPHS 69 (130)
Q Consensus 23 SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVVD~PnS 69 (130)
++..+|+.|-.+++-+++...+..+.+..++...|.-+-.+.|.|..
T Consensus 57 ~~~e~l~~GtTt~~d~~~~~~~~~~a~~~a~~~~g~r~~~~~~~~~~ 103 (263)
T cd01305 57 VLRDMRETGIGAFADFREGGVEGIELLRRALGKLPVPFEVILGRPTE 103 (263)
T ss_pred HHHHHHhcCCeEEEEccCcchhHHHHHHHHHHhcCCCceEEeccCCc
Confidence 46778999999999998877778888889999998886566677754
No 68
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=59 Score=25.15 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHHhhcccCc-eeEEEEccCCHHHHHHHHHHHHHcccc----ceEEeeCCCCCCcceEEEEEEeC
Q psy17721 22 LRLFTRLSRTA-RAVFQFYPENSAQIELVTSQAMRAGFY----GGLVVDYPHSTKAKKFFLVLMTG 82 (130)
Q Consensus 22 ~SLY~~L~rGa-RAVlQFYPEn~~Q~EmIt~aA~kaGF~----GGlVVD~PnS~KAKK~yLvL~~G 82 (130)
..+|..|.... +-.+|-| ..|++-|.+++..-||. --..||||--...|=.|||--.+
T Consensus 31 ~n~~e~L~~qedk~~l~e~---e~q~k~~l~~i~e~G~iird~d~glVDFpa~~Ng~~~~lCWK~D 93 (123)
T COG4911 31 KNEIELLLVQEDKYALQEY---ESQTKKILDEIIEKGIIIRDIDIGLVDFPAIINGKPAFLCWKID 93 (123)
T ss_pred HHHHHHhcccccHHHHHHH---HHHHHHHHHHHHHcCceeeccccccccchhhhCCceEEEEEecC
Confidence 34566665322 3344433 57899999999998885 33468999998777789997554
No 69
>KOG3201|consensus
Probab=34.29 E-value=91 Score=25.92 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=35.8
Q ss_pred HHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEeeCC
Q psy17721 23 RLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVVDYP 67 (130)
Q Consensus 23 SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVVD~P 67 (130)
++..-|++-|||.+ |=|.--+-++-..+.+-.+||.-.+--||-
T Consensus 125 tIk~lL~p~g~Al~-fsPRRg~sL~kF~de~~~~gf~v~l~enyd 168 (201)
T KOG3201|consen 125 TIKSLLRPSGRALL-FSPRRGQSLQKFLDEVGTVGFTVCLEENYD 168 (201)
T ss_pred HHHHHhCcccceeE-ecCcccchHHHHHHHHHhceeEEEecccHh
Confidence 34455778888766 899999999999999999999877777763
No 70
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=33.67 E-value=51 Score=26.45 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcccCceeEEEEcc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYP 40 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYP 40 (130)
+.++..+++.|++||+.++--+.
T Consensus 162 ~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 162 LKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred HHHHHHHHHHcCcCcEEEEEECC
Confidence 57899999999999999887554
No 71
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=33.38 E-value=86 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=31.6
Q ss_pred cCceeEEEEccCCHHHH-HHHHHHHHHcccc-ceEEeeCCCCC
Q psy17721 30 RTARAVFQFYPENSAQI-ELVTSQAMRAGFY-GGLVVDYPHST 70 (130)
Q Consensus 30 rGaRAVlQFYPEn~~Q~-EmIt~aA~kaGF~-GGlVVD~PnS~ 70 (130)
+++..-||+|.-.+..+ +-+...|.++||. =.|-||-|...
T Consensus 131 ~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g 173 (367)
T TIGR02708 131 NGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGG 173 (367)
T ss_pred CCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 46789999999665554 7888999999997 45668877554
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=32.96 E-value=1.2e+02 Score=22.98 Aligned_cols=24 Identities=4% Similarity=-0.172 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcccCceeEEEEccC
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPE 41 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPE 41 (130)
..++..+...|++||+.++.....
T Consensus 131 ~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 131 ASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred HHHHHHHHHHcCCCcEEEEEecCC
Confidence 357899999999999999987643
No 73
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=32.90 E-value=41 Score=23.20 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHccccceEEee
Q psy17721 42 NSAQIELVTSQAMRAGFYGGLVVD 65 (130)
Q Consensus 42 n~~Q~EmIt~aA~kaGF~GGlVVD 65 (130)
+++|++.|-.+=.++||..-|++|
T Consensus 49 t~eqv~~LN~~l~~~Gf~~~L~~D 72 (73)
T PF14794_consen 49 TEEQVAKLNQALQKAGFDEELEAD 72 (73)
T ss_dssp -HHHHHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHHcCCCceeccC
Confidence 789999999999999999988887
No 74
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=32.25 E-value=1.1e+02 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccc
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGF 58 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF 58 (130)
+...++...+..|++||+.++.+=. .| +.+......+||
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g~---~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVGN---SM-EALEEAYPDVPF 267 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECc---CH-HHHHHHHHhCCC
Confidence 3467899999999999999998743 33 455555555665
No 75
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=31.52 E-value=81 Score=27.21 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcccCceeEEE--EccCCH------------HHHHHHHHHHHHccccceEEeeC
Q psy17721 18 QISHLRLFTRLSRTARAVFQ--FYPENS------------AQIELVTSQAMRAGFYGGLVVDY 66 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQ--FYPEn~------------~Q~EmIt~aA~kaGF~GGlVVD~ 66 (130)
+..|..+++.|++||+.++= ..|+.. .+.|-+.+.+.++||.-=-+.|.
T Consensus 195 ~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 195 QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 57889999999999998763 233211 13455667788899984444553
No 76
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=30.33 E-value=1.2e+02 Score=24.61 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGF 58 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF 58 (130)
..++..+++.|++||+-++--.- .+|.+.+.++..+ +|
T Consensus 239 ~~ll~~~~~~LkpgG~li~sgi~--~~~~~~v~~~~~~-~f 276 (288)
T TIGR00406 239 KELYPQFSRLVKPGGWLILSGIL--ETQAQSVCDAYEQ-GF 276 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCc--HhHHHHHHHHHHc-cC
Confidence 46788999999999999996442 4677777655544 35
No 77
>COG3554 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.19 E-value=24 Score=29.08 Aligned_cols=9 Identities=78% Similarity=1.339 Sum_probs=7.8
Q ss_pred ceEEeeCCC
Q psy17721 60 GGLVVDYPH 68 (130)
Q Consensus 60 GGlVVD~Pn 68 (130)
-|+|||||.
T Consensus 177 dGlVvDYPg 185 (190)
T COG3554 177 DGLVVDYPG 185 (190)
T ss_pred CceEEeCcc
Confidence 589999996
No 78
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=28.74 E-value=47 Score=22.10 Aligned_cols=25 Identities=20% Similarity=-0.092 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhcccCceeEE
Q psy17721 12 AQFSLKQISHLRLFTRLSRTARAVF 36 (130)
Q Consensus 12 ~qw~l~~~FF~SLY~~L~rGaRAVl 36 (130)
.++-+...|+......|++||+.++
T Consensus 89 ~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 89 ALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp -GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4444667999999999999999876
No 79
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.33 E-value=1.9e+02 Score=21.03 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=35.6
Q ss_pred HHHH-HHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcc-c--cceEEeeCCC
Q psy17721 12 AQFS-LKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAG-F--YGGLVVDYPH 68 (130)
Q Consensus 12 ~qw~-l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaG-F--~GGlVVD~Pn 68 (130)
.+|+ .+..++..+|+.|++||..++..-...... .++..+....| | ..-++.+.++
T Consensus 29 ~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~iiW~K~~ 88 (231)
T PF01555_consen 29 EEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG-FLFELALEIFGGFFLRNEIIWNKPN 88 (231)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-HHHHHHHHHHTT-EEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH-HHHHHHHHHhhhhheeccceeEecC
Confidence 4452 246789999999999999999876655443 23444445556 6 3667777763
No 80
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=28.10 E-value=2e+02 Score=24.94 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHH
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAM 54 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~ 54 (130)
++..++...+..|++||+-|+.-.--++++-|......+
T Consensus 355 ~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l 393 (445)
T PRK14904 355 LQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFL 393 (445)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHH
Confidence 455799999999999999999975554444333333333
No 81
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=28.02 E-value=1.1e+02 Score=26.22 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=23.8
Q ss_pred hhHHHHH-HHHHHHHHHhhcccCceeEEEEcc
Q psy17721 10 SKAQFSL-KQISHLRLFTRLSRTARAVFQFYP 40 (130)
Q Consensus 10 s~~qw~l-~~~FF~SLY~~L~rGaRAVlQFYP 40 (130)
.+++|.- .+.++..+|+.|++||+-++..|.
T Consensus 340 ~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 340 DTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 3455521 258999999999999999998764
No 82
>PRK00536 speE spermidine synthase; Provisional
Probab=27.69 E-value=51 Score=27.53 Aligned_cols=21 Identities=10% Similarity=-0.238 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcccCceeEEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQF 38 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQF 38 (130)
..||..++++|++||--|.|-
T Consensus 151 ~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 151 IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hHHHHHHHHhcCCCcEEEECC
Confidence 689999999999999999993
No 83
>PRK00811 spermidine synthase; Provisional
Probab=27.59 E-value=68 Score=26.25 Aligned_cols=41 Identities=10% Similarity=-0.107 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcccCceeEEEEcc-C-CHHHHHHHHHHHHHc
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYP-E-NSAQIELVTSQAMRA 56 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYP-E-n~~Q~EmIt~aA~ka 56 (130)
..+.||..+++.|++||.-|+|... . ..+...-|.+...++
T Consensus 169 ~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 169 FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 4579999999999999999998542 1 244455554444444
No 84
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=26.96 E-value=1.6e+02 Score=21.58 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcccCceeEEEEc
Q psy17721 18 QISHLRLFTRLSRTARAVFQFY 39 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFY 39 (130)
..++..++..|++||+-++.-+
T Consensus 123 ~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 123 QKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred HHHHHHHHHHcCCCcEEEEEEe
Confidence 4678999999999999887543
No 85
>PLN02979 glycolate oxidase
Probab=26.70 E-value=1.5e+02 Score=26.30 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=32.8
Q ss_pred CceeEEEEcc-CCHHHHHHHHHHHHHcccc-ceEEeeCCCCCCc
Q psy17721 31 TARAVFQFYP-ENSAQIELVTSQAMRAGFY-GGLVVDYPHSTKA 72 (130)
Q Consensus 31 GaRAVlQFYP-En~~Q~EmIt~aA~kaGF~-GGlVVD~PnS~KA 72 (130)
++..-||+|. .+.+-++-+...|.++||. =.|-||=|.+.+.
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R 163 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRR 163 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCc
Confidence 5689999995 5556678888999999997 5666898888443
No 86
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=26.43 E-value=1.1e+02 Score=24.67 Aligned_cols=40 Identities=18% Similarity=-0.044 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcccCceeEEEEc-c-CCHHHHHHHHHHHHHc
Q psy17721 17 KQISHLRLFTRLSRTARAVFQFY-P-ENSAQIELVTSQAMRA 56 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQFY-P-En~~Q~EmIt~aA~ka 56 (130)
...||+.+.+.|++||..|+|.- | -+.+..+.|.+....+
T Consensus 165 ~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~ 206 (270)
T TIGR00417 165 TKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA 206 (270)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 46899999999999999999832 1 1244444444444443
No 87
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=26.31 E-value=82 Score=23.95 Aligned_cols=21 Identities=0% Similarity=-0.182 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcccCce-eEEEE
Q psy17721 18 QISHLRLFTRLSRTAR-AVFQF 38 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaR-AVlQF 38 (130)
..++..+++.|++||+ .++-+
T Consensus 113 ~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 113 PEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred HHHHHHHHHHhCCCcEEEEEEe
Confidence 4788999999999999 44444
No 88
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=26.18 E-value=92 Score=28.58 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=26.2
Q ss_pred EEEEccCCHHHHHHHHHHHHHccc------------------cceEEeeCC
Q psy17721 35 VFQFYPENSAQIELVTSQAMRAGF------------------YGGLVVDYP 67 (130)
Q Consensus 35 VlQFYPEn~~Q~EmIt~aA~kaGF------------------~GGlVVD~P 67 (130)
-.=++|+|.+|+..|.+.|.+.|. .||+|||.-
T Consensus 135 ~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~ggivIdl~ 185 (555)
T PLN02805 135 DVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMS 185 (555)
T ss_pred CEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCCCEEEEEcc
Confidence 334689999999999999987642 368999975
No 89
>KOG4730|consensus
Probab=25.21 E-value=86 Score=29.36 Aligned_cols=41 Identities=29% Similarity=0.249 Sum_probs=32.1
Q ss_pred EccCCHHHHHHHHHHHHHccccceEEeeCCCCCCcceEEEEEEeCC
Q psy17721 38 FYPENSAQIELVTSQAMRAGFYGGLVVDYPHSTKAKKFFLVLMTGG 83 (130)
Q Consensus 38 FYPEn~~Q~EmIt~aA~kaGF~GGlVVD~PnS~KAKK~yLvL~~G~ 83 (130)
=||++.+|++-|..+|.++|-.==+|- |-||-- =||+..|.
T Consensus 54 ~yP~teaeL~~lVa~A~~a~~kirvVg-~gHSp~----~l~ctdg~ 94 (518)
T KOG4730|consen 54 NYPKTEAELVELVAAATEAGKKIRVVG-SGHSPS----KLVCTDGL 94 (518)
T ss_pred CCCCCHHHHHHHHHHHHHcCceEEEec-ccCCCC----cceecccc
Confidence 599999999999999999998766655 878742 25666663
No 90
>PHA01753 Holliday junction resolvase
Probab=24.56 E-value=68 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHccccce---EEeeCCCC
Q psy17721 42 NSAQIELVTSQAMRAGFYGG---LVVDYPHS 69 (130)
Q Consensus 42 n~~Q~EmIt~aA~kaGF~GG---lVVD~PnS 69 (130)
+++|++-|..+|-+.||.|| +.|-|+..
T Consensus 65 ~~~Ki~kLi~fa~~fg~~~~~p~i~vkf~~~ 95 (121)
T PHA01753 65 DKFQIEKLFRFCEIFSFCECKPLVMVRYKKY 95 (121)
T ss_pred CHHHHHHHHHHHHHhCccCCeEEEEEEecCc
Confidence 68999999999999999766 56666644
No 91
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=24.42 E-value=52 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcccCceeEEEE
Q psy17721 18 QISHLRLFTRLSRTARAVFQF 38 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQF 38 (130)
+..+..+|++||+||+.++--
T Consensus 133 ~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 133 ERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEee
Confidence 467899999999999988763
No 92
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=24.24 E-value=1e+02 Score=27.66 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=18.1
Q ss_pred EccCCHHHHHHHHHHHHHcc
Q psy17721 38 FYPENSAQIELVTSQAMRAG 57 (130)
Q Consensus 38 FYPEn~~Q~EmIt~aA~kaG 57 (130)
++|++.+|+.-|.+.|.+.|
T Consensus 60 v~P~s~eeV~~iv~~a~~~~ 79 (499)
T PRK11230 60 VLPKQMEQVQALLAVCHRLR 79 (499)
T ss_pred EeeCCHHHHHHHHHHHHHcC
Confidence 67999999999999999865
No 93
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=24.18 E-value=67 Score=26.57 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCccccchhh-HHHHHH--HHHHHHHHhhcccCceeE-EEEccC
Q psy17721 2 NNLDLRSISK-AQFSLK--QISHLRLFTRLSRTARAV-FQFYPE 41 (130)
Q Consensus 2 ~~~~~~svs~-~qw~l~--~~FF~SLY~~L~rGaRAV-lQFYPE 41 (130)
|..|++++|- +++ +- +.-...+|++|++|||.+ +=|.+-
T Consensus 118 ~sFD~vt~~fglrn-v~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 118 NSFDAVTISFGLRN-VTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CccCEEEeeehhhc-CCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 3455555542 222 11 477889999999999975 445543
No 94
>PF06475 Glycolipid_bind: Putative glycolipid-binding; InterPro: IPR009467 This family consists of several hypothetical bacterial proteins. The function of this family is unknown.; PDB: 2H1T_A.
Probab=23.56 E-value=32 Score=27.22 Aligned_cols=10 Identities=60% Similarity=1.069 Sum_probs=7.4
Q ss_pred ceEEeeCCCC
Q psy17721 60 GGLVVDYPHS 69 (130)
Q Consensus 60 GGlVVD~PnS 69 (130)
-|+|||||.=
T Consensus 166 ~G~V~dYP~l 175 (179)
T PF06475_consen 166 DGFVVDYPGL 175 (179)
T ss_dssp TS-EEEETTT
T ss_pred CceEEeCcch
Confidence 5899999974
No 95
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=22.64 E-value=77 Score=27.62 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHhhcccCceeEEEEccCCHHHH-------HHHHHHHHHcccc
Q psy17721 10 SKAQFSLKQISHLRLFTRLSRTARAVFQFYPENSAQI-------ELVTSQAMRAGFY 59 (130)
Q Consensus 10 s~~qw~l~~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~-------EmIt~aA~kaGF~ 59 (130)
|.|--+-.+.|+..||+.|+||||-. -|-.|+.|. .-+..--.++||.
T Consensus 217 S~AgeLYseefY~El~RiLkrgGrlF--HYvG~Pg~ryrG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 217 SLAGELYSEEFYRELYRILKRGGRLF--HYVGNPGKRYRGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred chhhhHhHHHHHHHHHHHcCcCCcEE--EEeCCCCcccccCChhHHHHHHHHhcCce
Confidence 33443345899999999999999954 355555531 2234555788986
No 96
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.42 E-value=1.2e+02 Score=25.59 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHHhhcccCceeEEEEccCCHHHHHHHHHHHHHcc
Q psy17721 23 RLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAG 57 (130)
Q Consensus 23 SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaG 57 (130)
+-|..++-||.|-+=++|++.+++..+.+.|.+.+
T Consensus 26 ~~~tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ 60 (307)
T PRK13906 26 KRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNE 60 (307)
T ss_pred ccceEcCcCceeEEEEEcCCHHHHHHHHHHHHHcC
Confidence 45788999999999999999999999999888654
No 97
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=21.79 E-value=2.7e+02 Score=21.37 Aligned_cols=52 Identities=19% Similarity=0.036 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHhhcccCceeEEEE---ccCCHHHHHHHHHHHHHccccceEEeeC
Q psy17721 11 KAQFSLKQISHLRLFTRLSRTARAVFQF---YPENSAQIELVTSQAMRAGFYGGLVVDY 66 (130)
Q Consensus 11 ~~qw~l~~~FF~SLY~~L~rGaRAVlQF---YPEn~~Q~EmIt~aA~kaGF~GGlVVD~ 66 (130)
.-|- |...||.|-...|+.+|+..+=. .|-+.-|++ ..|.++|+.=-=.++|
T Consensus 99 ~nr~-Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~---~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 99 LNRE-LLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIE---ELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHH-HHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHH---HHHHhcCCEEEEEecC
Confidence 3344 77899999999999999987644 343555665 7788888864444444
No 98
>COG2207 AraC AraC-type DNA-binding domain-containing proteins [Transcription]
Probab=21.79 E-value=1.4e+02 Score=19.55 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=10.2
Q ss_pred HHHHHHHHcccc
Q psy17721 48 LVTSQAMRAGFY 59 (130)
Q Consensus 48 mIt~aA~kaGF~ 59 (130)
-|+..|..+||.
T Consensus 87 ~i~~iA~~~Gf~ 98 (127)
T COG2207 87 SITEIALRLGYS 98 (127)
T ss_pred CHHHHHHHhCcC
Confidence 588999999985
No 99
>PLN02366 spermidine synthase
Probab=21.76 E-value=86 Score=26.49 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcccCceeEEEEcc-C-CHHHHHHHHHHHHHccc
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQFYP-E-NSAQIELVTSQAMRAGF 58 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQFYP-E-n~~Q~EmIt~aA~kaGF 58 (130)
..+.||..++++|++||.-|.|--. - ..+...-|.+. ++.-|
T Consensus 184 ~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~t-l~~~F 227 (308)
T PLN02366 184 FEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAI-CRETF 227 (308)
T ss_pred hHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHH-HHHHC
Confidence 4578999999999999999997421 0 13444444444 44445
No 100
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=21.73 E-value=1.6e+02 Score=25.90 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=32.8
Q ss_pred CceeEEEEccCCHHHHHHHHHHHHHccccce-EEeeCCCCCC
Q psy17721 31 TARAVFQFYPENSAQIELVTSQAMRAGFYGG-LVVDYPHSTK 71 (130)
Q Consensus 31 GaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GG-lVVD~PnS~K 71 (130)
++..-||+|.-+.+-.+-+...|.++||.+= |-||=|-..+
T Consensus 115 ~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~ 156 (361)
T cd04736 115 DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGY 156 (361)
T ss_pred CCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Confidence 4678999999877888889999999999753 3467777654
No 101
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=21.60 E-value=1.2e+02 Score=21.64 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcccCceeEEEEccCCHHHHHHH
Q psy17721 18 QISHLRLFTRLSRTARAVFQFYPENSAQIELV 49 (130)
Q Consensus 18 ~~FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmI 49 (130)
+.++..++..|++||+.++..+....+-.+.+
T Consensus 90 ~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~ 121 (152)
T PF13847_consen 90 EKVLKNIIRLLKPGGILIISDPNHNDELPEQL 121 (152)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEEECChHHHHHHHH
Confidence 57899999999999999999888444333333
No 102
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=21.55 E-value=1.7e+02 Score=24.13 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHHhhcccCceeEEEEccCCHHHHHHHHHHHHHccccceEEe
Q psy17721 20 SHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVV 64 (130)
Q Consensus 20 FF~SLY~~L~rGaRAVlQFYPEn~~Q~EmIt~aA~kaGF~GGlVV 64 (130)
=|+++..-|+....-++ +.+-+.++.-.|..+|.+.|..+....
T Consensus 180 d~~~~L~~ik~~~~~~i-il~~~~~~~~~il~qa~~~gm~~~~~~ 223 (384)
T cd06393 180 DARPLLKEMKRGREFRI-IFDCSHQMAAQILKQAMAMGMMTEYYH 223 (384)
T ss_pred HHHHHHHHHhhcCceEE-EEECCHHHHHHHHHHHHHhccccCceE
Confidence 35666677775433333 456667888889999999998764433
No 103
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=21.38 E-value=4.4e+02 Score=21.23 Aligned_cols=43 Identities=14% Similarity=0.005 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcccCceeEEEEc--cCCHHHHHHHHHHHHHccc
Q psy17721 15 SLKQISHLRLFTRLSRTARAVFQFY--PENSAQIELVTSQAMRAGF 58 (130)
Q Consensus 15 ~l~~~FF~SLY~~L~rGaRAVlQFY--PEn~~Q~EmIt~aA~kaGF 58 (130)
+....||..+.++|++||--|+|.. -.+.+....|.+ .++.-|
T Consensus 168 l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~-tl~~~F 212 (246)
T PF01564_consen 168 LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILK-TLRSVF 212 (246)
T ss_dssp GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHH-HHHTTS
T ss_pred ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHH-HHHHhC
Confidence 3567999999999999999999972 234555555654 444444
No 104
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=20.85 E-value=1.4e+02 Score=19.06 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.1
Q ss_pred EEccCCHHHHHHHHHHHHHcc
Q psy17721 37 QFYPENSAQIELVTSQAMRAG 57 (130)
Q Consensus 37 QFYPEn~~Q~EmIt~aA~kaG 57 (130)
.+.|+|.+|+++|..-....+
T Consensus 2 rv~p~t~~q~~~L~~L~~~~~ 22 (74)
T PF02244_consen 2 RVTPKTEEQLELLQELEQSNE 22 (74)
T ss_dssp EEEESSHHHHHHHHHHHHHST
T ss_pred EEEeCCHHHHHHHHHHhcccc
Confidence 468999999999998885444
No 105
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=20.72 E-value=81 Score=22.29 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=8.3
Q ss_pred cccceEEeeCCCCC
Q psy17721 57 GFYGGLVVDYPHST 70 (130)
Q Consensus 57 GF~GGlVVD~PnS~ 70 (130)
.+.+|+++++||.+
T Consensus 83 ~~~~~F~f~NPna~ 96 (107)
T PRK09502 83 GLNEGFKFTNPNVK 96 (107)
T ss_pred CCCceEEEECCCCC
Confidence 34556666667653
No 106
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=20.45 E-value=78 Score=23.68 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEccCCHH-----------HHHHHHHHHHHcccc
Q psy17721 36 FQFYPENSA-----------QIELVTSQAMRAGFY 59 (130)
Q Consensus 36 lQFYPEn~~-----------Q~EmIt~aA~kaGF~ 59 (130)
-|-||||++ .-.+++.+-.|.||.
T Consensus 21 WqEy~eNde~~~PlTEDElkEF~~kseQlrrNGf~ 55 (97)
T PF15337_consen 21 WQEYPENDENCLPLTEDELKEFQVKSEQLRRNGFG 55 (97)
T ss_pred ccccCcCCcccCcCcHHHHHHHHHHHHHHHHcccc
Confidence 499999987 356788899999996
No 107
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=20.41 E-value=1.2e+02 Score=23.10 Aligned_cols=21 Identities=0% Similarity=-0.277 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcccCceeEEE
Q psy17721 17 KQISHLRLFTRLSRTARAVFQ 37 (130)
Q Consensus 17 ~~~FF~SLY~~L~rGaRAVlQ 37 (130)
.+.++..+++.|++||+.++-
T Consensus 113 ~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 113 IPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred HHHHHHHHHHHcCCCcEEEEE
Confidence 368999999999999997654
No 108
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=20.18 E-value=5.7e+02 Score=22.10 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcccCceeEEE---Ecc-CCHHHHHHHH
Q psy17721 16 LKQISHLRLFTRLSRTARAVFQ---FYP-ENSAQIELVT 50 (130)
Q Consensus 16 l~~~FF~SLY~~L~rGaRAVlQ---FYP-En~~Q~EmIt 50 (130)
++..++...+..|++||+-|.- +.| ||.++++.+.
T Consensus 357 ~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 357 IQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 4567899999999999999954 444 4444555443
Done!