RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17721
         (130 letters)



>2nrh_A Transcriptional activator, putative, BAF family; structural
           genomics, unknown function, putative transcription
           activator, PSI-2; 2.30A {Campylobacter jejuni} SCOP:
           c.55.1.13 c.55.1.13
          Length = 219

 Score = 31.2 bits (71), Expect = 0.068
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 7/40 (17%)

Query: 50  TSQAMRAGFYGGLV--VDYPHSTKAKKFFLVLMTGGDLPL 87
           T  A+  G + G+   +       A +   +  TGGD   
Sbjct: 146 TMDALSYGVFKGIYLLIK-----DAAQNKKLYFTGGDGQF 180


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.081
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 13/41 (31%)

Query: 7  RSISKAQFSLKQISHLRLFTRLSRTARAVFQFYPENSAQIE 47
          +++ K Q SLK      L+   S  A A+        A +E
Sbjct: 20 QALKKLQASLK------LYADDSAPALAI-------KATME 47


>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
           {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
           2f9t_A*
          Length = 271

 Score = 28.5 bits (64), Expect = 0.56
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 50  TSQAMRAGFYGGLV--VDYPHSTKAKKF---FLVLMTGGDLPL 87
           T++A+  G    L   V   ++   +       + +TGGD  L
Sbjct: 203 TAEAVERGCLLMLRGFVREQYAMACELLGPDCEIFLTGGDAEL 245


>3djc_A Type III pantothenate kinase; structural genomics, putative
           transfera 2, protein structure initiative; 2.40A
           {Legionella pneumophila subsp}
          Length = 266

 Score = 27.6 bits (62), Expect = 1.0
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 50  TSQAMRAG-FYG------GLVVDYPHSTKAKKFFLVLMTGGDLPL 87
           T +++++G +YG       L+    H        L+L TGG   L
Sbjct: 186 TIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILILATGGFASL 230


>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein,
           bacteriophage T4, viral protein; 1.80A {Enterobacteria
           phage T4}
          Length = 283

 Score = 25.9 bits (56), Expect = 4.8
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 2   NNLDLRSISKAQFSLKQISHLRLF----TRLSRTARAVFQFYPENSAQIELV 49
           + +++  +SKA ++    + L ++    TR S TA+AVF + P+  +Q  ++
Sbjct: 150 DKIEIEIVSKADYAKGASALLPIYPGGGTRAS-TAKAVFGYGPQTDSQYAII 200


>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding,
           coenzyme A biosynthesis, cytoplasm, metal-binding,
           nucleotide-binding, potassium; HET: PAU; 1.51A
           {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB:
           3bf1_A* 3bf3_A* 2gtd_A
          Length = 249

 Score = 25.7 bits (57), Expect = 5.4
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 50  TSQAMRAGFYGGLV--VDY--PHSTKAKKFFLVLMTGGDLPL 87
           T + +R G   G V  ++       +      V++TGG   +
Sbjct: 182 TEENIRLGVVNGSVYALEGIIGRIKEVYGDLPVVLTGGQSKI 223


>3bul_A Methionine synthase; transferase, reactivation conformation,
           cobalamin, intermodular interactions, amino-acid
           biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli}
           SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A*
           1k7y_A* 1k98_A* 1bmt_A*
          Length = 579

 Score = 25.5 bits (56), Expect = 7.9
 Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)

Query: 12  AQFSLKQISHLRLFTRLSRTARAVFQFYPENS 43
           A   L ++S  +         R V   +P N 
Sbjct: 332 ANDMLDKLSAEKTLN-----PRGVVGLFPANR 358


>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
           HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
           c.47.1.10 d.16.1.2 PDB: 1foh_A*
          Length = 665

 Score = 25.4 bits (55), Expect = 8.7
 Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 6/77 (7%)

Query: 19  ISHLRLFTRLSRTARAVFQFYPENSAQIELVTSQAMRAGFYGGLVVDYPHSTKAKKFFLV 78
           I     F+RL     A         +      +      F  G  ++Y  +       + 
Sbjct: 413 IDFDHQFSRLFSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDENL------VT 466

Query: 79  LMTGGDLPLPPALGEGE 95
                   L      G 
Sbjct: 467 DKKSSKQELAKNCVVGT 483


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,925,066
Number of extensions: 102351
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 10
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)