BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17723
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 51 EMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDR 110
E++ C C R HP CL M +K Y WQC +CKSC+ C +++DD++LFCD CDR
Sbjct: 22 ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR 81
Query: 111 GYHNYCI 117
GYH YC+
Sbjct: 82 GYHMYCL 88
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 32 KPVPESDKC---KACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
+P+P C K +R+ E+I C C HP+CL E+ +K WQC +CK
Sbjct: 1 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 60
Query: 89 SCVAC-EKAQDDDKMLFCDLCDRGYHNYC 116
+C +C ++ ++ D MLFCD CDRG+H C
Sbjct: 61 TCSSCRDQGKNADNMLFCDSCDRGFHMEC 89
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 32 KPVPESDKC---KACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
+P+P C K +R+ E+I C C HP+CL E+ +K WQC +CK
Sbjct: 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62
Query: 89 SCVAC-EKAQDDDKMLFCDLCDRGYHNYC 116
+C +C ++ ++ D MLFCD CDRG+H C
Sbjct: 63 TCSSCRDQGKNADNMLFCDSCDRGFHMEC 91
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
C CD + C C ++ H CLD+ + +K WQC +CK C C+++ +
Sbjct: 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDI---AVTPLKRAGWQCPECKVCQNCKQSGE 65
Query: 99 DDKMLFCDLCDRGYHNYCIG--LDKIPTVG 126
D KML CD CD+GYH +C+ + +PT G
Sbjct: 66 DSKMLVCDTCDKGYHTFCLQPVMKSVPTNG 95
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVA 92
PE C+ C + +M+ C C + H CL ++ + W+C +C+ C++
Sbjct: 52 PECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ---PVMKSVPTNGWKCKNCRICIS 106
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 83 QCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTV 125
Q D C C + +DDK+LFCD CD YH +C+ L +P +
Sbjct: 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCL-LPPLPEI 53
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCI--GLDKIP 123
C C K +DDK++ CD C++ +H +C+ L ++P
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVP 38
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 192 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 229
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 213
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 7 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 44
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 65
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 25 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 62
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 22 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 59
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 57
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric
Protein
Length = 140
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 52 MIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDD 99
M+QCGKC R++H C +L EM + L + S +CV C + D
Sbjct: 2 MMQCGKCDRWVHSKCENLSDEM--YEILSNLPESVAYTCVNCTERHVD 47
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87
D+C C RD GE+I C C R H ACL P +P W+CS C
Sbjct: 6 DECAVC-RD--GGELICCDGCPRAFHLACLSPPLREIPSGT---WRCSSC 49
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
+C C QD DK L CD CD +H YC+ L +P+
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPS 57
>pdb|3LQH|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo In The Free Form
pdb|3LQI|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQI|C Chain C, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me2 Peptide
pdb|3LQJ|A Chain A, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
pdb|3LQJ|B Chain B, Crystal Structure Of Mll1 Phd3-Bromo Complexed With
H3(1-9)k4me3 Peptide
Length = 183
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 50 GEMIQCGKCVRYLHPACLDLPGEM 73
+M+QCGKC R++H C +L EM
Sbjct: 19 SKMMQCGKCDRWVHSKCENLSDEM 42
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 95 KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
++Q+ + +LFCD+C+ H C G+ IP
Sbjct: 35 ESQNSNVILFCDMCNLAVHQECYGVPYIP 63
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87
D+C C RD GE+I C C R H ACL P +P W+CS C
Sbjct: 9 DECAVC-RD--GGELICCDGCPRAFHLACLSPPLREIPS---GTWRCSSC 52
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 95 KAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
++Q+ + +LFCD+C+ H C G+ IP
Sbjct: 26 ESQNSNVILFCDMCNLAVHQECYGVPYIP 54
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
C C K D M+ CD CD YH C+G+ P
Sbjct: 21 CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP 54
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
SC C + + L CD C+ YH YC+ LDK+P
Sbjct: 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVP 64
>pdb|2KYU|A Chain A, The Solution Structure Of The Phd3 Finger Of Mll
Length = 67
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 50 GEMIQCGKCVRYLHPACLDLPGEM 73
+M+QCGKC R++H C +L EM
Sbjct: 22 SKMMQCGKCDRWVHSKCENLSDEM 45
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4
(Mi2b)
Length = 61
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
E+D C+ GE+I C C R H CLD E P K W C C+
Sbjct: 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGK---WSCPHCE 56
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYCIGLD 120
CE Q +++ CD C R YH C+ D
Sbjct: 14 CEVCQQGGEIILCDTCPRAYHMVCLDPD 41
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 95 KAQDDDKMLFCDLCDRGYHNYCIGL---DKIPTVGLVF 129
K D ++ML CD C +H CIG+ D +P+ L F
Sbjct: 24 KDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61
>pdb|4BBQ|A Chain A, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
pdb|4BBQ|B Chain B, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
Length = 117
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 51 EMIQCGKCVRYLHPACLDLPGEMLPHMKLYD-WQCSDC 87
++++C C +HP CL + GE L + +L + W+C C
Sbjct: 74 KLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKC 111
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
Protein 21a
Length = 56
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
D C C + +G+++ C C R H CLD P + +P W C C+
Sbjct: 10 DFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGM---WICPRCQ 54
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
D C C + +G+++ C C R H CLD P + +P W C C+
Sbjct: 4 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGM---WICPRCQ 50
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 85 SDCKSCVACEKAQDDDKMLF-CDLCDRGYHNYCIGL 119
SD K C+ +D+ K CD C YH C+G+
Sbjct: 5 SDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGI 40
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 52 MIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
MI+C C + H +C+ + E + LY C +C+
Sbjct: 20 MIECDMCQDWFHGSCVGVEEEKAADIDLY--HCPNCE 54
Score = 26.2 bits (56), Expect = 7.8, Method: Composition-based stats.
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 102 MLFCDLCDRGYHNYCIGLDK 121
M+ CD+C +H C+G+++
Sbjct: 20 MIECDMCQDWFHGSCVGVEE 39
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 52 MIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
MI+CG C + H +C+ + E + +Y C DC++
Sbjct: 27 MIECGLCQDWFHGSCVGIEEENAVDIDIY--HCPDCEA 62
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 94 EKAQDDDKMLFCDLCDRGYHNYC 116
E ++ ++M+ CD C +GYH C
Sbjct: 15 EYSEAPNEMVICDKCGQGYHQLC 37
>pdb|4FQX|C Chain C, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|C Chain C, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 203
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 70 PGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLC 108
P ++ H L+ C D V +A D+D++ F D
Sbjct: 10 PDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFS 48
>pdb|1HDM|A Chain A, Histocompatibility Antigen Hla-Dm
Length = 201
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 70 PGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLC 108
P ++ H L+ C D V +A D+D++ F D
Sbjct: 10 PDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFS 48
>pdb|2BC4|A Chain A, Crystal Structure Of Hla-Dm
pdb|2BC4|C Chain C, Crystal Structure Of Hla-Dm
Length = 211
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 70 PGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLC 108
P ++ H L+ C D V +A D+D++ F D
Sbjct: 10 PDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFS 48
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 85 SDCKSCVACEKAQDDDKMLF-CDLCDRGYHNYCIGL 119
SD K C+ D+ K CD C YH C+G+
Sbjct: 5 SDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGI 40
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 85 SDCKSCVACEKAQDDDKMLF-CDLCDRGYHNYCIGL 119
SD K C+ D+ K CD C YH C+G+
Sbjct: 5 SDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGI 40
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 25.8 bits (55), Expect = 9.5, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 13 NFCRQVGITLGFHAGRPSKKPVPE 36
N C +G G H RP P+PE
Sbjct: 182 NICGFIGENAGVHTDRPISGPLPE 205
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
P D C C + GE++ C KC + H +C +P L + +W C+ C+ E
Sbjct: 2 PNEDWCAVCQ---NGGELLCCEKCPKVFHLSC-HVPT--LTNFPSGEWICTFCRDLSKPE 55
Query: 95 KAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLV 128
D CD HN +K T GLV
Sbjct: 56 VEYD---------CDAPSHNS----EKKKTEGLV 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,340,613
Number of Sequences: 62578
Number of extensions: 169418
Number of successful extensions: 388
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 83
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)