Query psy17723
Match_columns 145
No_of_seqs 163 out of 1626
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:20:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244|consensus 99.9 8.2E-24 1.8E-28 165.1 -0.1 106 34-139 221-335 (336)
2 KOG1512|consensus 99.8 2.4E-21 5.3E-26 152.4 1.3 100 36-135 257-363 (381)
3 KOG4443|consensus 99.5 3.4E-15 7.4E-20 128.1 0.8 101 34-136 15-119 (694)
4 PF00628 PHD: PHD-finger; Int 99.1 9.6E-12 2.1E-16 74.9 0.0 46 89-134 1-50 (51)
5 KOG4299|consensus 99.1 8.3E-11 1.8E-15 101.0 3.6 47 89-135 255-305 (613)
6 PF00628 PHD: PHD-finger; Int 98.9 1.9E-10 4.1E-15 69.2 0.4 50 39-89 1-50 (51)
7 smart00249 PHD PHD zinc finger 98.9 6.9E-10 1.5E-14 64.5 2.8 44 89-132 1-47 (47)
8 KOG1973|consensus 98.9 3.6E-10 7.7E-15 90.2 1.5 44 97-140 227-273 (274)
9 KOG4299|consensus 98.9 1.1E-09 2.3E-14 94.3 3.3 51 37-88 253-303 (613)
10 KOG0825|consensus 98.8 3.6E-10 7.8E-15 99.3 -1.4 47 89-135 217-266 (1134)
11 smart00249 PHD PHD zinc finger 98.7 2E-08 4.4E-13 58.2 3.5 47 39-87 1-47 (47)
12 KOG0957|consensus 98.7 1.9E-08 4.2E-13 85.0 4.5 45 89-133 546-596 (707)
13 KOG0383|consensus 98.6 2E-08 4.4E-13 88.4 3.2 78 57-140 1-99 (696)
14 PF15446 zf-PHD-like: PHD/FYVE 98.6 3E-08 6.4E-13 73.3 3.3 80 39-118 1-140 (175)
15 KOG0954|consensus 98.6 1.6E-08 3.4E-13 88.6 1.2 94 35-135 269-389 (893)
16 COG5034 TNG2 Chromatin remodel 98.5 3.3E-08 7.1E-13 77.3 1.6 45 89-135 223-270 (271)
17 KOG4323|consensus 98.5 1E-07 2.3E-12 80.3 4.4 98 35-137 81-226 (464)
18 KOG1244|consensus 98.5 5.7E-08 1.2E-12 76.7 2.0 49 36-87 280-328 (336)
19 KOG0956|consensus 98.5 8.4E-08 1.8E-12 83.7 2.6 75 39-118 7-155 (900)
20 KOG0955|consensus 98.4 1.3E-07 2.8E-12 86.4 3.5 81 32-118 214-361 (1051)
21 COG5141 PHD zinc finger-contai 98.3 2.3E-07 5.1E-12 78.4 1.7 48 36-88 192-241 (669)
22 KOG1473|consensus 98.2 4.1E-07 8.8E-12 82.9 0.6 96 33-137 340-481 (1414)
23 KOG0825|consensus 98.1 1.2E-06 2.7E-11 77.6 2.4 52 34-88 212-264 (1134)
24 KOG4443|consensus 98.1 8.9E-07 1.9E-11 77.0 0.8 98 35-135 66-202 (694)
25 KOG1245|consensus 98.1 7.3E-07 1.6E-11 84.0 -0.1 52 89-140 1110-1163(1404)
26 KOG1973|consensus 98.0 5.2E-06 1.1E-10 66.4 2.9 45 37-88 219-266 (274)
27 KOG0957|consensus 97.9 8E-06 1.7E-10 69.5 3.5 52 36-87 543-595 (707)
28 KOG0955|consensus 97.8 7.9E-06 1.7E-10 75.0 2.1 49 89-137 221-271 (1051)
29 KOG0383|consensus 97.8 9.5E-06 2E-10 71.9 2.4 48 35-88 45-92 (696)
30 COG5034 TNG2 Chromatin remodel 97.8 1.7E-05 3.7E-10 62.2 3.2 45 37-88 221-268 (271)
31 KOG1512|consensus 97.8 1.1E-05 2.4E-10 64.5 1.8 44 37-85 314-357 (381)
32 PF13831 PHD_2: PHD-finger; PD 97.7 7.4E-06 1.6E-10 46.0 -0.4 34 100-133 2-36 (36)
33 KOG0954|consensus 97.6 1.9E-05 4.2E-10 69.7 1.0 47 89-135 273-321 (893)
34 COG5141 PHD zinc finger-contai 97.2 9.3E-05 2E-09 63.0 0.8 47 88-134 194-242 (669)
35 KOG0956|consensus 97.2 0.00012 2.6E-09 64.5 1.3 49 90-138 8-60 (900)
36 cd04718 BAH_plant_2 BAH, or Br 97.1 0.00035 7.6E-09 51.0 2.2 24 61-87 1-24 (148)
37 PF13831 PHD_2: PHD-finger; PD 97.0 8.4E-05 1.8E-09 41.7 -1.3 34 50-87 2-35 (36)
38 KOG4323|consensus 96.9 0.00033 7.2E-09 59.5 0.6 49 39-87 170-221 (464)
39 KOG1245|consensus 96.4 0.00073 1.6E-08 64.3 -0.6 52 34-88 1105-1156(1404)
40 PF13832 zf-HC5HC2H_2: PHD-zin 95.9 0.007 1.5E-07 41.5 2.6 71 39-118 2-86 (110)
41 PF15446 zf-PHD-like: PHD/FYVE 95.6 0.0054 1.2E-07 45.6 1.1 51 89-139 1-64 (175)
42 PF14446 Prok-RING_1: Prokaryo 94.2 0.025 5.5E-07 34.4 1.2 30 89-118 7-37 (54)
43 PF13901 DUF4206: Domain of un 94.0 0.03 6.5E-07 42.9 1.6 49 83-138 144-201 (202)
44 PF14446 Prok-RING_1: Prokaryo 93.7 0.041 9E-07 33.5 1.6 34 37-70 5-39 (54)
45 PF12861 zf-Apc11: Anaphase-pr 93.7 0.034 7.4E-07 36.9 1.2 45 90-136 35-81 (85)
46 PF13639 zf-RING_2: Ring finge 93.3 0.0024 5.2E-08 36.8 -4.3 42 38-87 1-43 (44)
47 PF13639 zf-RING_2: Ring finge 93.1 0.015 3.3E-07 33.3 -1.0 41 89-133 2-44 (44)
48 KOG0804|consensus 91.5 0.11 2.4E-06 44.1 1.8 40 33-72 171-211 (493)
49 PF07227 DUF1423: Protein of u 91.5 0.13 2.8E-06 43.7 2.2 54 81-135 123-192 (446)
50 PF11793 FANCL_C: FANCL C-term 91.1 0.12 2.7E-06 32.9 1.3 48 89-136 4-65 (70)
51 PF11793 FANCL_C: FANCL C-term 90.9 0.044 9.6E-07 34.9 -0.9 51 37-87 2-61 (70)
52 PF07649 C1_3: C1-like domain; 90.7 0.083 1.8E-06 27.9 0.2 29 89-117 2-30 (30)
53 PF13771 zf-HC5HC2H: PHD-like 90.7 0.095 2.1E-06 34.4 0.5 33 36-71 35-70 (90)
54 KOG1829|consensus 90.3 0.093 2E-06 46.1 0.3 48 27-74 329-380 (580)
55 PF12861 zf-Apc11: Anaphase-pr 90.2 0.089 1.9E-06 35.0 0.1 47 36-87 20-77 (85)
56 PF13832 zf-HC5HC2H_2: PHD-zin 89.7 0.15 3.2E-06 34.8 0.9 33 36-70 54-88 (110)
57 KOG4628|consensus 89.1 0.21 4.6E-06 41.3 1.5 35 38-72 230-264 (348)
58 KOG2752|consensus 88.8 0.28 6E-06 40.1 1.9 29 89-118 130-165 (345)
59 KOG1246|consensus 87.1 0.47 1E-05 43.9 2.6 46 89-135 157-204 (904)
60 KOG1473|consensus 86.0 0.45 9.6E-06 44.8 1.8 42 89-133 346-389 (1414)
61 PF12678 zf-rbx1: RING-H2 zinc 85.4 0.34 7.4E-06 31.0 0.6 27 103-133 45-73 (73)
62 KOG1952|consensus 85.4 0.11 2.4E-06 47.3 -2.3 52 37-88 191-243 (950)
63 cd00162 RING RING-finger (Real 84.7 0.39 8.5E-06 26.3 0.6 41 90-135 2-44 (45)
64 KOG1701|consensus 83.7 1.1 2.4E-05 38.1 3.0 79 58-138 352-464 (468)
65 PF00130 C1_1: Phorbol esters/ 80.4 1.5 3.2E-05 25.7 2.0 30 89-118 13-44 (53)
66 KOG1734|consensus 80.1 0.75 1.6E-05 37.0 0.8 39 33-71 220-265 (328)
67 PF00130 C1_1: Phorbol esters/ 79.9 1.6 3.5E-05 25.6 2.0 35 36-70 10-46 (53)
68 KOG1632|consensus 79.4 1.2 2.5E-05 37.0 1.7 47 92-138 64-116 (345)
69 PF09889 DUF2116: Uncharacteri 79.2 0.35 7.5E-06 30.0 -1.1 32 113-144 3-36 (59)
70 PF08746 zf-RING-like: RING-li 77.6 1.4 2.9E-05 25.4 1.1 39 90-132 1-43 (43)
71 KOG1632|consensus 76.9 4.6 9.9E-05 33.5 4.5 84 51-137 74-178 (345)
72 PF03107 C1_2: C1 domain; Int 76.3 2.8 6E-05 22.0 2.1 29 39-67 2-30 (30)
73 PF10497 zf-4CXXC_R1: Zinc-fin 76.2 1.3 2.8E-05 30.5 0.9 45 89-134 9-69 (105)
74 smart00744 RINGv The RING-vari 75.2 1.1 2.3E-05 26.5 0.3 42 89-132 1-48 (49)
75 PF00641 zf-RanBP: Zn-finger i 74.4 1.6 3.4E-05 22.8 0.8 10 79-88 2-11 (30)
76 KOG1246|consensus 74.2 5.2 0.00011 37.2 4.5 47 37-87 155-201 (904)
77 KOG1493|consensus 74.1 0.55 1.2E-05 30.6 -1.2 46 89-135 33-79 (84)
78 KOG1952|consensus 74.0 1.1 2.4E-05 41.1 0.2 49 89-137 193-247 (950)
79 PLN02400 cellulose synthase 73.4 6.1 0.00013 37.5 4.7 50 33-88 32-85 (1085)
80 PF10497 zf-4CXXC_R1: Zinc-fin 71.7 1.8 3.9E-05 29.8 0.7 60 36-96 6-79 (105)
81 PF13771 zf-HC5HC2H: PHD-like 71.6 2.1 4.4E-05 27.9 1.0 28 89-118 38-67 (90)
82 cd00029 C1 Protein kinase C co 71.3 2.1 4.5E-05 24.4 0.9 30 89-118 13-44 (50)
83 smart00109 C1 Protein kinase C 70.5 1.8 4E-05 24.4 0.5 30 89-118 13-43 (49)
84 KOG4628|consensus 70.4 2.6 5.6E-05 35.0 1.5 47 89-138 231-279 (348)
85 PF05191 ADK_lid: Adenylate ki 70.3 3.7 8.1E-05 22.7 1.7 29 103-135 2-30 (36)
86 PHA02929 N1R/p28-like protein; 69.6 1.8 3.9E-05 34.1 0.5 37 36-72 173-214 (238)
87 PF12773 DZR: Double zinc ribb 69.3 5.3 0.00011 23.1 2.4 9 101-109 28-36 (50)
88 PLN02436 cellulose synthase A 69.1 7.5 0.00016 36.8 4.3 50 33-88 32-85 (1094)
89 PF00301 Rubredoxin: Rubredoxi 68.5 6.3 0.00014 23.1 2.5 15 121-136 30-44 (47)
90 PF07227 DUF1423: Protein of u 68.3 4.9 0.00011 34.4 2.8 31 39-69 130-163 (446)
91 smart00184 RING Ring finger. E 67.8 1.9 4E-05 22.5 0.1 37 90-132 1-39 (39)
92 KOG1081|consensus 67.5 10 0.00022 32.7 4.6 32 35-69 87-118 (463)
93 KOG3612|consensus 67.3 8.2 0.00018 33.9 3.9 50 36-90 59-108 (588)
94 KOG1844|consensus 66.9 3.5 7.7E-05 35.3 1.7 78 51-137 58-137 (508)
95 PHA02862 5L protein; Provision 66.3 1.5 3.2E-05 32.1 -0.6 53 89-143 4-59 (156)
96 PRK14890 putative Zn-ribbon RN 64.3 7.4 0.00016 24.1 2.3 43 53-109 8-55 (59)
97 PF10367 Vps39_2: Vacuolar sor 64.3 4.3 9.3E-05 26.9 1.4 29 89-118 80-108 (109)
98 PF12906 RINGv: RING-variant d 63.6 1.9 4.2E-05 25.1 -0.3 41 90-132 1-47 (47)
99 KOG2114|consensus 62.3 3.6 7.7E-05 37.9 0.9 42 89-137 842-883 (933)
100 COG1107 Archaea-specific RecJ- 62.0 11 0.00023 33.8 3.7 47 79-137 51-106 (715)
101 cd00350 rubredoxin_like Rubred 62.0 6.2 0.00013 21.1 1.5 12 125-136 16-27 (33)
102 PF13922 PHD_3: PHD domain of 61.5 2 4.3E-05 27.2 -0.6 21 50-70 41-61 (69)
103 PF13901 DUF4206: Domain of un 59.4 7.5 0.00016 29.6 2.2 33 37-69 152-189 (202)
104 KOG3970|consensus 59.3 5.1 0.00011 31.6 1.2 72 53-136 22-104 (299)
105 cd00730 rubredoxin Rubredoxin; 58.8 11 0.00024 22.4 2.3 14 122-136 31-44 (50)
106 KOG2807|consensus 57.7 7.3 0.00016 32.2 1.9 43 89-133 332-374 (378)
107 PF14634 zf-RING_5: zinc-RING 57.0 7.2 0.00016 22.0 1.3 42 90-134 2-44 (44)
108 PLN02189 cellulose synthase 56.1 17 0.00037 34.4 4.2 48 35-88 32-83 (1040)
109 smart00547 ZnF_RBZ Zinc finger 55.7 6.6 0.00014 19.5 0.9 16 125-140 1-16 (26)
110 KOG2041|consensus 54.9 12 0.00026 34.4 2.9 58 28-90 1108-1165(1189)
111 COG2888 Predicted Zn-ribbon RN 53.7 11 0.00023 23.4 1.7 27 80-109 26-57 (61)
112 PF07496 zf-CW: CW-type Zinc F 53.7 8.8 0.00019 22.6 1.4 30 101-131 2-34 (50)
113 PF04810 zf-Sec23_Sec24: Sec23 52.6 5.8 0.00013 22.2 0.4 33 102-136 2-34 (40)
114 PHA02929 N1R/p28-like protein; 52.5 8 0.00017 30.5 1.3 43 89-135 176-225 (238)
115 PF14569 zf-UDP: Zinc-binding 51.1 1.7 3.7E-05 28.4 -2.2 35 35-69 7-45 (80)
116 PHA02862 5L protein; Provision 50.5 3.6 7.7E-05 30.1 -0.9 37 37-73 2-39 (156)
117 PF10080 DUF2318: Predicted me 48.8 8.6 0.00019 26.3 0.9 53 16-68 13-68 (102)
118 PF02318 FYVE_2: FYVE-type zin 47.6 10 0.00023 26.2 1.2 19 122-140 90-108 (118)
119 cd07160 NR_DBD_LXR DNA-binding 45.9 18 0.0004 24.6 2.1 32 36-67 17-50 (101)
120 PHA02926 zinc finger-like prot 45.1 5.6 0.00012 31.2 -0.6 53 35-88 168-226 (242)
121 PLN02638 cellulose synthase A 43.3 22 0.00048 33.9 2.8 48 35-88 15-66 (1079)
122 PLN03208 E3 ubiquitin-protein 43.2 6.6 0.00014 30.0 -0.4 33 36-71 17-49 (193)
123 PF13913 zf-C2HC_2: zinc-finge 42.5 9.5 0.00021 19.1 0.2 14 51-64 1-14 (25)
124 COG5194 APC11 Component of SCF 42.5 10 0.00023 25.0 0.5 28 103-134 49-78 (88)
125 PRK12496 hypothetical protein; 40.6 23 0.00049 26.2 2.1 33 103-143 128-160 (164)
126 PF13920 zf-C3HC4_3: Zinc fing 40.6 3.5 7.6E-05 23.9 -1.8 43 89-136 4-47 (50)
127 PF02891 zf-MIZ: MIZ/SP-RING z 40.4 3.8 8.3E-05 24.2 -1.7 23 112-134 22-49 (50)
128 PF14787 zf-CCHC_5: GAG-polypr 39.3 16 0.00034 20.3 0.8 12 104-115 4-15 (36)
129 COG5082 AIR1 Arginine methyltr 38.9 46 0.001 25.4 3.5 68 35-115 58-133 (190)
130 PF09297 zf-NADH-PPase: NADH p 38.6 26 0.00057 18.4 1.6 24 88-111 4-30 (32)
131 KOG3612|consensus 38.5 22 0.00048 31.4 1.9 49 79-136 58-109 (588)
132 KOG2272|consensus 38.1 18 0.00039 29.0 1.3 61 37-97 137-205 (332)
133 PLN02915 cellulose synthase A 37.8 35 0.00076 32.5 3.2 50 33-88 11-64 (1044)
134 PF05715 zf-piccolo: Piccolo Z 37.6 18 0.0004 22.4 1.0 9 80-88 48-56 (61)
135 PHA02825 LAP/PHD finger-like p 37.4 9.2 0.0002 28.4 -0.4 52 89-142 10-64 (162)
136 COG5540 RING-finger-containing 37.4 8.1 0.00018 31.7 -0.8 45 37-87 323-367 (374)
137 KOG0827|consensus 35.9 7.1 0.00015 33.0 -1.3 37 37-73 4-41 (465)
138 PF14803 Nudix_N_2: Nudix N-te 35.5 26 0.00056 19.1 1.3 10 101-110 21-30 (34)
139 KOG1734|consensus 35.5 11 0.00023 30.6 -0.4 49 89-137 226-281 (328)
140 PF10058 DUF2296: Predicted in 35.3 24 0.00052 21.2 1.3 32 101-134 21-52 (54)
141 COG1773 Rubredoxin [Energy pro 34.9 40 0.00087 20.5 2.2 8 80-87 35-42 (55)
142 PF14205 Cys_rich_KTR: Cystein 34.8 35 0.00077 20.7 1.9 10 78-87 25-34 (55)
143 PF08274 PhnA_Zn_Ribbon: PhnA 34.7 24 0.00053 18.7 1.1 12 99-110 16-27 (30)
144 PF00097 zf-C3HC4: Zinc finger 34.3 8.6 0.00019 21.0 -0.8 39 90-132 1-41 (41)
145 PF14445 Prok-RING_2: Prokaryo 33.9 5.8 0.00013 23.8 -1.6 32 37-68 7-38 (57)
146 KOG4217|consensus 33.2 42 0.00092 29.3 2.8 42 22-63 254-297 (605)
147 PRK14559 putative protein seri 32.5 41 0.00088 30.4 2.7 15 121-135 36-50 (645)
148 KOG2930|consensus 32.4 9.6 0.00021 26.3 -0.9 29 103-135 76-106 (114)
149 PF13240 zinc_ribbon_2: zinc-r 31.3 27 0.00058 17.2 0.8 19 90-109 2-20 (23)
150 smart00132 LIM Zinc-binding do 30.4 36 0.00079 17.6 1.4 7 110-116 21-27 (39)
151 COG5243 HRD1 HRD ubiquitin lig 30.4 8.2 0.00018 32.6 -1.8 34 36-72 286-332 (491)
152 PF13248 zf-ribbon_3: zinc-rib 30.2 33 0.00072 17.2 1.1 9 51-59 15-23 (26)
153 PF09416 UPF1_Zn_bind: RNA hel 29.9 28 0.00061 25.6 1.1 22 90-112 3-24 (152)
154 PF03380 DUF282: Caenorhabditi 29.0 43 0.00094 18.9 1.5 15 105-119 2-16 (39)
155 COG5415 Predicted integral mem 28.6 32 0.00069 26.9 1.2 33 102-136 192-224 (251)
156 KOG2462|consensus 28.6 1.4E+02 0.0031 24.1 4.9 14 99-112 212-225 (279)
157 PF13923 zf-C3HC4_2: Zinc fing 27.6 21 0.00045 19.4 0.0 37 90-132 1-39 (39)
158 KOG3362|consensus 27.6 32 0.00068 25.2 1.0 32 35-70 116-148 (156)
159 PF06937 EURL: EURL protein; 27.5 32 0.00069 27.7 1.1 22 37-58 15-36 (285)
160 PF08792 A2L_zn_ribbon: A2L zi 26.7 43 0.00093 18.0 1.2 25 38-62 4-31 (33)
161 PF07191 zinc-ribbons_6: zinc- 26.1 18 0.00038 23.2 -0.5 40 101-140 16-64 (70)
162 KOG4445|consensus 26.0 16 0.00034 30.1 -0.9 30 86-118 117-146 (368)
163 PF14369 zf-RING_3: zinc-finge 25.9 46 0.00099 18.1 1.2 8 104-111 23-30 (35)
164 PF13465 zf-H2C2_2: Zinc-finge 25.9 49 0.0011 16.4 1.3 13 100-112 12-24 (26)
165 PF00412 LIM: LIM domain; Int 25.6 39 0.00085 19.5 1.1 28 90-118 1-28 (58)
166 PF09963 DUF2197: Uncharacteri 24.9 34 0.00075 20.9 0.7 37 103-139 3-44 (56)
167 cd06970 NR_DBD_PNR DNA-binding 24.9 43 0.00092 22.3 1.2 31 36-66 5-37 (92)
168 PRK03824 hypA hydrogenase nick 24.7 67 0.0014 22.9 2.3 13 51-63 69-81 (135)
169 PF13717 zinc_ribbon_4: zinc-r 24.7 58 0.0013 17.7 1.5 11 53-63 3-13 (36)
170 PF05458 Siva: Cd27 binding pr 24.1 89 0.0019 23.4 2.9 27 39-67 113-139 (175)
171 KOG1081|consensus 23.9 56 0.0012 28.2 2.0 43 89-135 91-133 (463)
172 smart00401 ZnF_GATA zinc finge 23.9 47 0.001 19.6 1.1 27 37-63 3-36 (52)
173 PF13842 Tnp_zf-ribbon_2: DDE_ 23.6 68 0.0015 17.0 1.6 21 90-110 3-24 (32)
174 KOG2932|consensus 23.4 49 0.0011 27.4 1.5 33 102-135 90-132 (389)
175 PF07754 DUF1610: Domain of un 23.0 63 0.0014 16.2 1.3 8 80-87 15-22 (24)
176 KOG3053|consensus 22.8 26 0.00056 28.2 -0.2 49 89-137 22-82 (293)
177 KOG3799|consensus 22.5 32 0.0007 25.0 0.3 49 89-137 67-118 (169)
178 TIGR00599 rad18 DNA repair pro 22.4 30 0.00066 29.3 0.1 50 29-88 18-67 (397)
179 KOG0823|consensus 21.9 86 0.0019 24.6 2.5 36 35-73 45-80 (230)
180 COG5574 PEX10 RING-finger-cont 21.2 27 0.00059 28.0 -0.4 48 90-140 218-265 (271)
181 TIGR02605 CxxC_CxxC_SSSS putat 21.1 79 0.0017 18.1 1.7 9 126-134 26-34 (52)
182 PF15227 zf-C3HC4_4: zinc fing 21.0 39 0.00084 18.9 0.3 26 107-132 15-42 (42)
183 PF12171 zf-C2H2_jaz: Zinc-fin 21.0 56 0.0012 16.1 0.9 9 104-112 3-11 (27)
184 PLN02195 cellulose synthase A 20.9 69 0.0015 30.4 2.1 46 37-88 6-55 (977)
185 KOG2879|consensus 20.9 73 0.0016 25.9 2.0 33 35-70 237-270 (298)
186 COG5533 UBP5 Ubiquitin C-termi 20.3 43 0.00094 27.8 0.6 18 124-141 282-299 (415)
No 1
>KOG1244|consensus
Probab=99.87 E-value=8.2e-24 Score=165.09 Aligned_cols=106 Identities=37% Similarity=0.853 Sum_probs=95.9
Q ss_pred CccccccccccccC-------CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecC
Q psy17723 34 VPESDKCKACDRDT-------SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCD 106 (145)
Q Consensus 34 ~~~~~~C~~C~~~~-------~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd 106 (145)
+.+...|..|.+.. .+++||.|..|+++-|++||+...+|+..++.+.|+|.+|++|.+||.+.+++.|||||
T Consensus 221 a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcd 300 (336)
T KOG1244|consen 221 AQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCD 300 (336)
T ss_pred ccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeec
Confidence 45678999997654 34999999999999999999999888888899999999999999999999999999999
Q ss_pred Cccccccccccc--CCCCCCCCccccccccchhhh
Q psy17723 107 LCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKK 139 (145)
Q Consensus 107 ~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~ 139 (145)
.||++||+|||. +.+.|+|.|-|..|..+-+++
T Consensus 301 dcdrgyhmyclsppm~eppegswsc~KOG~~~~e~ 335 (336)
T KOG1244|consen 301 DCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELKEK 335 (336)
T ss_pred ccCCceeeEecCCCcCCCCCCchhHHHHHHHHhhc
Confidence 999999999997 888999999999999876654
No 2
>KOG1512|consensus
Probab=99.82 E-value=2.4e-21 Score=152.35 Aligned_cols=100 Identities=29% Similarity=0.658 Sum_probs=90.5
Q ss_pred cccccccccccCC------CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecCCcc
Q psy17723 36 ESDKCKACDRDTS------AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCD 109 (145)
Q Consensus 36 ~~~~C~~C~~~~~------~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~ 109 (145)
...+|.+|..+.. .+.||.|..|...+|+.|+.++.+++..++.+.|.|.+|+.|.+|+++..++++||||.||
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CD 336 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCD 336 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheecccccc
Confidence 3568999987653 3899999999999999999999988888899999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCcccc-ccccc
Q psy17723 110 RGYHNYCIGLDKIPTVGLVFT-LKKKK 135 (145)
Q Consensus 110 ~~yH~~Cl~l~~~p~~~W~C~-~C~~~ 135 (145)
++||++|++|..+|.|.|+|. .|..+
T Consensus 337 RG~HT~CVGL~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 337 RGPHTLCVGLQDLPRGEWICDMRCREA 363 (381)
T ss_pred CCCCccccccccccCccchhhhHHHHh
Confidence 999999999999999999998 35433
No 3
>KOG4443|consensus
Probab=99.50 E-value=3.4e-15 Score=128.08 Aligned_cols=101 Identities=27% Similarity=0.640 Sum_probs=87.6
Q ss_pred CccccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCccccccccCCCceecCCcccc
Q psy17723 34 VPESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRG 111 (145)
Q Consensus 34 ~~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~ 111 (145)
+....+|.+|+..|.. ..|+.|..|+..||++|+..++.... ....|+|+.|++|..|+..++..++++|+.||..
T Consensus 15 ~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~--l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvs 92 (694)
T KOG4443|consen 15 IIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAV--LSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVS 92 (694)
T ss_pred hhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHH--hcCCcccCCceeeeeccccCCccccccccccccc
Confidence 3456789999988854 77999999999999999998765432 2346999999999999999999999999999999
Q ss_pred ccccccc--CCCCCCCCccccccccch
Q psy17723 112 YHNYCIG--LDKIPTVGLVFTLKKKKN 136 (145)
Q Consensus 112 yH~~Cl~--l~~~p~~~W~C~~C~~~~ 136 (145)
||.||+. ++.+|.+.|+|+.|...+
T Consensus 93 yh~yc~~P~~~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 93 YHCYCQKPPNDKVPSGPWLCKKCTRCR 119 (694)
T ss_pred ccccccCCccccccCcccccHHHHhhh
Confidence 9999997 889999999999887654
No 4
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=99.12 E-value=9.6e-12 Score=74.86 Aligned_cols=46 Identities=33% Similarity=0.725 Sum_probs=39.2
Q ss_pred cCccccccccCCCceecCCcccccccccccCC----CCCCCCcccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLD----KIPTVGLVFTLKKK 134 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~----~~p~~~W~C~~C~~ 134 (145)
+|.+|++.++++.||+|+.|+++||..|+++. .++.+.|+|+.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 57899998888999999999999999999843 33456899999975
No 5
>KOG4299|consensus
Probab=99.07 E-value=8.3e-11 Score=101.00 Aligned_cols=47 Identities=28% Similarity=0.559 Sum_probs=42.1
Q ss_pred cCccccccccCCCceecCCccccccccccc----CCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG----LDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~----l~~~p~~~W~C~~C~~~ 135 (145)
+|..|++++.-..+++||+|++.||+.||+ ...+|.|.|+|+.|.-.
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 899999988777889999999999999997 56789999999999743
No 6
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.93 E-value=1.9e-10 Score=69.18 Aligned_cols=50 Identities=32% Similarity=0.902 Sum_probs=40.5
Q ss_pred ccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccccc
Q psy17723 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89 (145)
Q Consensus 39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 89 (145)
+|.+|++.++.+.||.|+.|.++||..|++++..... +....|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~-~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEE-IPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHS-HHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhcc-CCCCcEECcCCcC
Confidence 5889999777899999999999999999999765322 2234999998853
No 7
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1973|consensus
Probab=98.92 E-value=3.6e-10 Score=90.20 Aligned_cols=44 Identities=34% Similarity=0.483 Sum_probs=39.6
Q ss_pred ccCCCceecCC--cc-cccccccccCCCCCCCCccccccccchhhhh
Q psy17723 97 QDDDKMLFCDL--CD-RGYHNYCIGLDKIPTVGLVFTLKKKKNKKKK 140 (145)
Q Consensus 97 ~~~~~ll~Cd~--C~-~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~~~ 140 (145)
...+.|+-||. |+ .|||+.|++|...|.|.|||+.|..+.+++.
T Consensus 227 vsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~~~~ 273 (274)
T KOG1973|consen 227 VSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENKKKG 273 (274)
T ss_pred cccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhhhhccC
Confidence 33789999998 99 9999999999999999999999998877654
No 9
>KOG4299|consensus
Probab=98.88 E-value=1.1e-09 Score=94.27 Aligned_cols=51 Identities=33% Similarity=0.783 Sum_probs=44.4
Q ss_pred ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
+++|+.|.+.+.-..+|+|++|+++||+.||+||++. ..++.+.|+|++|+
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~-eniP~g~W~C~ec~ 303 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEP-ENIPPGSWFCPECK 303 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCc-ccCCCCccccCCCe
Confidence 4599999999955666999999999999999999654 56778899999997
No 10
>KOG0825|consensus
Probab=98.83 E-value=3.6e-10 Score=99.27 Aligned_cols=47 Identities=30% Similarity=0.646 Sum_probs=43.7
Q ss_pred cCccccccccCCCceecCCcccc-ccccccc--CCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRG-YHNYCIG--LDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~-yH~~Cl~--l~~~p~~~W~C~~C~~~ 135 (145)
.|.+|...+.++.||+||.|+.+ ||+|||+ |.++|-+.|+|+.|.--
T Consensus 217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 79999999999999999999999 9999998 78899999999999743
No 11
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0957|consensus
Probab=98.68 E-value=1.9e-08 Score=85.01 Aligned_cols=45 Identities=31% Similarity=0.664 Sum_probs=39.5
Q ss_pred cCccccccccCCCceecCCccccccccccc--CCCCCCC----Cccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTV----GLVFTLKK 133 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~----~W~C~~C~ 133 (145)
.|.||+++-+.-.++.||.|...||+.||+ |+.+|+. .|.|.+|-
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 799999987777889999999999999997 7888854 69999993
No 13
>KOG0383|consensus
Probab=98.62 E-value=2e-08 Score=88.43 Aligned_cols=78 Identities=27% Similarity=0.597 Sum_probs=63.7
Q ss_pred CCCCCccccCCCCCCCCCCcCCCCcccccccc-------------------cCccccccccCCCceecCCcccccccccc
Q psy17723 57 KCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK-------------------SCVACEKAQDDDKMLFCDLCDRGYHNYCI 117 (145)
Q Consensus 57 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-------------------~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl 117 (145)
.|.+.||..|+++.+..- ++.+|.|+.|. .|.+|+. .+++|.|+.|..+||.+|+
T Consensus 1 ~~~r~~~~~~~~p~~~~~---~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~---~g~~l~c~tC~~s~h~~cl 74 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEE---PEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICAD---GGELLWCDTCPASFHASCL 74 (696)
T ss_pred CCCcccCcCCCCcccccC---CcCCccCcchhhcccccccccCCcchhhhhhhhhhcC---CCcEEEeccccHHHHHHcc
Confidence 378999999999765432 26799999885 7999997 6799999999999999999
Q ss_pred c--CCCCCCCCccccccccchhhhh
Q psy17723 118 G--LDKIPTVGLVFTLKKKKNKKKK 140 (145)
Q Consensus 118 ~--l~~~p~~~W~C~~C~~~~~~~~ 140 (145)
+ +...|.+.|.|+.|.--..+++
T Consensus 75 ~~pl~~~p~~~~~c~Rc~~p~~~~k 99 (696)
T KOG0383|consen 75 GPPLTPQPNGEFICPRCFCPKNAGK 99 (696)
T ss_pred CCCCCcCCccceeeeeeccCCCccc
Confidence 7 7788888899999954444333
No 14
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.61 E-value=3e-08 Score=73.29 Aligned_cols=80 Identities=25% Similarity=0.681 Sum_probs=60.6
Q ss_pred ccccccccC---CCCCcEecCCCCCCccccCCCCCCC---CCCcC--CCCcccccccc--------------cCcccccc
Q psy17723 39 KCKACDRDT---SAGEMIQCGKCVRYLHPACLDLPGE---MLPHM--KLYDWQCSDCK--------------SCVACEKA 96 (145)
Q Consensus 39 ~C~~C~~~~---~~~~ll~C~~C~~~~H~~Cl~~~~~---~~~~~--~~~~W~C~~C~--------------~C~vC~~~ 96 (145)
+|.+|...| +.+.||+|.+|..+||..||++... +++.+ ..+-.+|..|+ .|..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 478886543 3489999999999999999998652 23344 23456888886 89999876
Q ss_pred c-------------------------------------cCC-CceecCCccccccccccc
Q psy17723 97 Q-------------------------------------DDD-KMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 97 ~-------------------------------------~~~-~ll~Cd~C~~~yH~~Cl~ 118 (145)
| +.+ .|..|..|.++||+.-|+
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP 140 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLP 140 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCC
Confidence 5 222 345699999999999996
No 15
>KOG0954|consensus
Probab=98.58 E-value=1.6e-08 Score=88.57 Aligned_cols=94 Identities=31% Similarity=0.548 Sum_probs=70.3
Q ss_pred ccccccccccccCC--CCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc-----cCccccccccCCCceecCC
Q psy17723 35 PESDKCKACDRDTS--AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK-----SCVACEKAQDDDKMLFCDL 107 (145)
Q Consensus 35 ~~~~~C~~C~~~~~--~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-----~C~vC~~~~~~~~ll~Cd~ 107 (145)
+++.+|++|..+.. ..+||+|+.|+...|..|+++ .+++.+.|.|..|. .|..|-..|...+-..=..
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGI-----le~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT 343 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGI-----LEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGT 343 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhce-----eecCCCCeeehhccccCCCCeeeccccCCcccccCCCC
Confidence 46889999998854 389999999999999999998 45667899999996 7888887653221111111
Q ss_pred cccccccccc-----------c-------CCCCCCCCc--cccccccc
Q psy17723 108 CDRGYHNYCI-----------G-------LDKIPTVGL--VFTLKKKK 135 (145)
Q Consensus 108 C~~~yH~~Cl-----------~-------l~~~p~~~W--~C~~C~~~ 135 (145)
+|.|..|. . ++.||+..| +|..|..+
T Consensus 344 --~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k 389 (893)
T KOG0954|consen 344 --KWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK 389 (893)
T ss_pred --eeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc
Confidence 77888886 1 355677788 78888755
No 16
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.52 E-value=3.3e-08 Score=77.27 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=38.2
Q ss_pred cCccccccccCCCceecCC--ccc-ccccccccCCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDL--CDR-GYHNYCIGLDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~--C~~-~yH~~Cl~l~~~p~~~W~C~~C~~~ 135 (145)
+| .|++.. -+.||-||. |.+ |||+.|++|..+|+|.|+|++|...
T Consensus 223 YC-fCqqvS-yGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 223 YC-FCQQVS-YGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred EE-Eecccc-cccceecCCCCCchhheeccccccCCCCCCcEeCHHhHhc
Confidence 55 677644 689999995 775 9999999999999999999999753
No 17
>KOG4323|consensus
Probab=98.51 E-value=1e-07 Score=80.34 Aligned_cols=98 Identities=22% Similarity=0.386 Sum_probs=69.9
Q ss_pred ccccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc------------------------
Q psy17723 35 PESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK------------------------ 88 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~------------------------ 88 (145)
..+..|.+|...... .+++.|+.|...||..|--+.... .+.|.+.+|.
T Consensus 81 ~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~-----~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~ 155 (464)
T KOG4323|consen 81 SSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS-----LDIGESTECVFPIFSQEGGALKKGRLARPSLPYP 155 (464)
T ss_pred ccccCCcccccccccCchhhhhhhhhccCcccccCccCcCc-----CCccccccccccccccccccccccccccccccCc
Confidence 456678888876643 578899999999999996553211 1233333332
Q ss_pred --------------cCcccc--ccccCCCceecCCccccccccccc------CCCCCCCCccccccccchh
Q psy17723 89 --------------SCVACE--KAQDDDKMLFCDLCDRGYHNYCIG------LDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 --------------~C~vC~--~~~~~~~ll~Cd~C~~~yH~~Cl~------l~~~p~~~W~C~~C~~~~~ 137 (145)
.|.||. .++...+||+|+.|..|||..|+. +...|...|+|..|....+
T Consensus 156 ~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 156 EASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred ccccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 455555 556667999999999999999995 3344778999999986644
No 18
>KOG1244|consensus
Probab=98.48 E-value=5.7e-08 Score=76.73 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=41.4
Q ss_pred cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87 (145)
Q Consensus 36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 87 (145)
+-..|.+|+...+.++||+|+.|.+.||++||.|++. ..+++.|.|--|
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~---eppegswsc~KO 328 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMV---EPPEGSWSCHLC 328 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcC---CCCCCchhHHHH
Confidence 3457889998888899999999999999999999873 446889987654
No 19
>KOG0956|consensus
Probab=98.46 E-value=8.4e-08 Score=83.66 Aligned_cols=75 Identities=23% Similarity=0.740 Sum_probs=61.8
Q ss_pred ccccccccC--CCCCcEecCC--CCCCccccCCCCCCCCCCcCCCCcccccccc--------------------------
Q psy17723 39 KCKACDRDT--SAGEMIQCGK--CVRYLHPACLDLPGEMLPHMKLYDWQCSDCK-------------------------- 88 (145)
Q Consensus 39 ~C~~C~~~~--~~~~ll~C~~--C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-------------------------- 88 (145)
-|-||.+.. .+..||.||+ |..+.|..|+++ ..++.+.|||..|.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGI-----vqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~ 81 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGI-----VQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNG 81 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhccee-----EecCCCchhhhhhhhhhhhccceeecccCcccceecccCC
Confidence 477887654 4589999987 999999999998 56778999999996
Q ss_pred -------------------------------------cCccccccccCCC-----ceecC--Cccccccccccc
Q psy17723 89 -------------------------------------SCVACEKAQDDDK-----MLFCD--LCDRGYHNYCIG 118 (145)
Q Consensus 89 -------------------------------------~C~vC~~~~~~~~-----ll~Cd--~C~~~yH~~Cl~ 118 (145)
.|+||.+.|.+.+ -|.|. .|.++||+.|..
T Consensus 82 GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ 155 (900)
T KOG0956|consen 82 GWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQ 155 (900)
T ss_pred CceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhh
Confidence 8999998765433 36775 689999999985
No 20
>KOG0955|consensus
Probab=98.44 E-value=1.3e-07 Score=86.43 Aligned_cols=81 Identities=21% Similarity=0.596 Sum_probs=68.1
Q ss_pred CCCccccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc---------------------
Q psy17723 32 KPVPESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK--------------------- 88 (145)
Q Consensus 32 ~~~~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~--------------------- 88 (145)
..+..+.+|.||.+.... +..|+||.|+.++|..|++. +.++++.|+|..|-
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi-----~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkq 288 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGI-----PFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQ 288 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCC-----CCCCCCcEeehhhccCcCcccceEeccCCCCccee
Confidence 455678899999998865 89999999999999999995 45678999999995
Q ss_pred ------------------------------------------cCccccccccCCCceecC--Cccccccccccc
Q psy17723 89 ------------------------------------------SCVACEKAQDDDKMLFCD--LCDRGYHNYCIG 118 (145)
Q Consensus 89 ------------------------------------------~C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~ 118 (145)
.|.+|+..+ .+.-+.|. .|-.+||.+|..
T Consensus 289 t~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~-~gaciqcs~~~c~~a~hvtca~ 361 (1051)
T KOG0955|consen 289 TDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKG-LGACIQCSKANCYTAFHVTCAR 361 (1051)
T ss_pred ccCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCC-CCcceecchhhhhhhhhhhhHh
Confidence 899999865 45667775 689999999983
No 21
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.31 E-value=2.3e-07 Score=78.41 Aligned_cols=48 Identities=21% Similarity=0.628 Sum_probs=41.4
Q ss_pred cccccccccccCCC--CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 36 ESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 36 ~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
-+++|.+|.++..+ +.+++|++|..+.|..|++++ .++++.|+|..|.
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~-----f~peG~WlCrkCi 241 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ-----FLPEGFWLCRKCI 241 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhcccce-----ecCcchhhhhhhc
Confidence 36789999888754 889999999999999999994 5568899999996
No 22
>KOG1473|consensus
Probab=98.19 E-value=4.1e-07 Score=82.86 Aligned_cols=96 Identities=19% Similarity=0.368 Sum_probs=79.7
Q ss_pred CCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc------------------------
Q psy17723 33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK------------------------ 88 (145)
Q Consensus 33 ~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~------------------------ 88 (145)
.+.-++.|.+|.+.+ .+++|.+|++.||..|+.++.... +...|+|.-|.
T Consensus 340 ~~~~ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~---~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~ 413 (1414)
T KOG1473|consen 340 EIEYDDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAV---PSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHT 413 (1414)
T ss_pred ceeecccccccCccc---ceeecccCCceEEeeecCCccccC---CCccchhhhhhhhccCcccccccChhhcccceecc
Confidence 445578999999999 999999999999999999987544 36689998775
Q ss_pred ----------------cCccccccccCCCceecCC-ccccccc-cccc----CCCCCCCCccccccccchh
Q psy17723 89 ----------------SCVACEKAQDDDKMLFCDL-CDRGYHN-YCIG----LDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 ----------------~C~vC~~~~~~~~ll~Cd~-C~~~yH~-~Cl~----l~~~p~~~W~C~~C~~~~~ 137 (145)
.|.+|++ ++.++.|+. |...||+ .||+ -..++++.|+|++|.-++-
T Consensus 414 ~iG~dr~gr~ywfi~rrl~Ie~~---det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM 481 (1414)
T KOG1473|consen 414 PIGRDRYGRKYWFISRRLRIEGM---DETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM 481 (1414)
T ss_pred CCCcCccccchhceeeeeEEecC---CCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence 6777775 567888887 9999999 9998 3457899999999976653
No 23
>KOG0825|consensus
Probab=98.13 E-value=1.2e-06 Score=77.56 Aligned_cols=52 Identities=25% Similarity=0.673 Sum_probs=43.7
Q ss_pred CccccccccccccCCCCCcEecCCCCCC-ccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 34 VPESDKCKACDRDTSAGEMIQCGKCVRY-LHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~-~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
......|.+|......+.||.|+.|+.. ||.+||++++. +++-..|+|.+|.
T Consensus 212 ~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~---eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLS---ESPVNEWYCTNCS 264 (1134)
T ss_pred ccccccceeeccCChHHhheeecccccceeeccccCcccc---cccccceecCcch
Confidence 3445679999999988999999999988 99999999873 3446799999884
No 24
>KOG4443|consensus
Probab=98.09 E-value=8.9e-07 Score=76.96 Aligned_cols=98 Identities=21% Similarity=0.570 Sum_probs=74.8
Q ss_pred ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCcccccc------------------
Q psy17723 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKA------------------ 96 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~------------------ 96 (145)
+.-.+|..|+.+|+...+++|+.|..+||-+|+.|+. .++..+.|+|+.|..|.-|+..
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~---~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c 142 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPN---DKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPC 142 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCcc---ccccCcccccHHHHhhhhccccccccchhhhccCcccccc
Confidence 4456788889888899999999999999999999987 4566889999988755555432
Q ss_pred ------------c---cCCCceecCCcccccccccccCCC------CCCCCccccccccc
Q psy17723 97 ------------Q---DDDKMLFCDLCDRGYHNYCIGLDK------IPTVGLVFTLKKKK 135 (145)
Q Consensus 97 ------------~---~~~~ll~Cd~C~~~yH~~Cl~l~~------~p~~~W~C~~C~~~ 135 (145)
. ....|+.|+.|.+|-|..|.++.. .-+..+.|..|+.+
T Consensus 143 ~s~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR~e 202 (694)
T KOG4443|consen 143 ASLSYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCRGE 202 (694)
T ss_pred cccccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceeehh
Confidence 1 122347899999999999987321 11247899999865
No 25
>KOG1245|consensus
Probab=98.07 E-value=7.3e-07 Score=84.03 Aligned_cols=52 Identities=29% Similarity=0.786 Sum_probs=47.8
Q ss_pred cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhhhh
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKKK 140 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~~ 140 (145)
.|.+|...+....|++|+.|..+||++|+. +..+|.++|+|+.|++++..+|
T Consensus 1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~~rr 1163 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHRARR 1163 (1404)
T ss_pred hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhhhhh
Confidence 899999988888999999999999999997 8899999999999999987444
No 26
>KOG1973|consensus
Probab=97.97 E-value=5.2e-06 Score=66.36 Aligned_cols=45 Identities=33% Similarity=0.872 Sum_probs=33.9
Q ss_pred ccccccccccCCCCCcEecCC--CC-CCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 37 SDKCKACDRDTSAGEMIQCGK--CV-RYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
..+| +|. ....++||.||. |. .+||+.|+++. ..+.+.|+|+.|+
T Consensus 219 ~~yC-~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~-----~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 219 PTYC-ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLK-----TKPKGKWYCPRCK 266 (274)
T ss_pred CEEE-Eec-ccccccccccCCCCCCcceEEEeccccc-----cCCCCcccchhhh
Confidence 3445 444 333459999998 99 99999999994 4456789999885
No 27
>KOG0957|consensus
Probab=97.93 E-value=8e-06 Score=69.48 Aligned_cols=52 Identities=35% Similarity=0.779 Sum_probs=45.1
Q ss_pred cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcC-CCCccccccc
Q psy17723 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHM-KLYDWQCSDC 87 (145)
Q Consensus 36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~-~~~~W~C~~C 87 (145)
-...|.||+...+...|+.||.|...||+.||+||+.-++.. +++.|+|.+|
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 356899999999889999999999999999999999766554 4789988876
No 28
>KOG0955|consensus
Probab=97.83 E-value=7.9e-06 Score=75.01 Aligned_cols=49 Identities=22% Similarity=0.517 Sum_probs=43.2
Q ss_pred cCccccccccC--CCceecCCcccccccccccCCCCCCCCccccccccchh
Q psy17723 89 SCVACEKAQDD--DKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 ~C~vC~~~~~~--~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~ 137 (145)
+|.||....-. ..+|+||.|+.++|.+|.+...+|+|.|+|..|.-...
T Consensus 221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 221 VCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred cceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcC
Confidence 89999986543 78899999999999999999999999999999985543
No 29
>KOG0383|consensus
Probab=97.82 E-value=9.5e-06 Score=71.86 Aligned_cols=48 Identities=25% Similarity=0.654 Sum_probs=40.7
Q ss_pred ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
.+...|.+|+..| .+|+|++|..+||..|+++++.. .+...|.|+.|.
T Consensus 45 ~~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~~pl~~---~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 45 AEQEACRICADGG---ELLWCDTCPASFHASCLGPPLTP---QPNGEFICPRCF 92 (696)
T ss_pred hhhhhhhhhcCCC---cEEEeccccHHHHHHccCCCCCc---CCccceeeeeec
Confidence 4567899999999 99999999999999999998743 334459999885
No 30
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.80 E-value=1.7e-05 Score=62.23 Aligned_cols=45 Identities=29% Similarity=0.826 Sum_probs=35.3
Q ss_pred ccccccccccCCCCCcEecCC--C-CCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 37 SDKCKACDRDTSAGEMIQCGK--C-VRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~--C-~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
+..| .|.+.. .++||.||+ | -.+||+.|++. ...+.+.|+|++|+
T Consensus 221 ~lYC-fCqqvS-yGqMVaCDn~nCkrEWFH~~CVGL-----k~pPKG~WYC~eCk 268 (271)
T COG5034 221 ELYC-FCQQVS-YGQMVACDNANCKREWFHLECVGL-----KEPPKGKWYCPECK 268 (271)
T ss_pred eeEE-Eecccc-cccceecCCCCCchhheecccccc-----CCCCCCcEeCHHhH
Confidence 3445 576543 569999988 8 58999999998 45668999999985
No 31
>KOG1512|consensus
Probab=97.78 E-value=1.1e-05 Score=64.45 Aligned_cols=44 Identities=25% Similarity=0.632 Sum_probs=38.1
Q ss_pred ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccc
Q psy17723 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCS 85 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~ 85 (145)
-..|.+|+++.-.+++++||.|++.||.+|++. ..++.+.|.|.
T Consensus 314 C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL-----~~lP~G~WICD 357 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCDVCDRGPHTLCVGL-----QDLPRGEWICD 357 (381)
T ss_pred cHhhhccCCcccchheeccccccCCCCcccccc-----ccccCccchhh
Confidence 346888888888899999999999999999998 46678999886
No 32
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.67 E-value=7.4e-06 Score=45.98 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=20.4
Q ss_pred CCceecCCcccccccccccCCCCCCC-Cccccccc
Q psy17723 100 DKMLFCDLCDRGYHNYCIGLDKIPTV-GLVFTLKK 133 (145)
Q Consensus 100 ~~ll~Cd~C~~~yH~~Cl~l~~~p~~-~W~C~~C~ 133 (145)
+.||+|+.|.-.+|..|-++..+|.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999998888877 89998874
No 33
>KOG0954|consensus
Probab=97.60 E-value=1.9e-05 Score=69.66 Aligned_cols=47 Identities=23% Similarity=0.577 Sum_probs=43.1
Q ss_pred cCccccccc--cCCCceecCCcccccccccccCCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~ 135 (145)
.|-||..++ ...+|||||.|....|..|.++.++|++.|+|..|.-+
T Consensus 273 iCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 273 ICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALG 321 (893)
T ss_pred eeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhcccc
Confidence 899999875 35799999999999999999999999999999999876
No 34
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.25 E-value=9.3e-05 Score=63.02 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=40.5
Q ss_pred ccCcccccccc--CCCceecCCcccccccccccCCCCCCCCcccccccc
Q psy17723 88 KSCVACEKAQD--DDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKK 134 (145)
Q Consensus 88 ~~C~vC~~~~~--~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~ 134 (145)
..|.+|..... ...+++||+|+-+.|..|.++.-+|+|.|+|..|.-
T Consensus 194 ~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~ 242 (669)
T COG5141 194 DICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIY 242 (669)
T ss_pred hhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcc
Confidence 37788887543 467799999999999999999999999999999973
No 35
>KOG0956|consensus
Probab=97.24 E-value=0.00012 Score=64.49 Aligned_cols=49 Identities=20% Similarity=0.577 Sum_probs=40.5
Q ss_pred Cccccc-ccc-CCCceecC--CcccccccccccCCCCCCCCccccccccchhh
Q psy17723 90 CVACEK-AQD-DDKMLFCD--LCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKK 138 (145)
Q Consensus 90 C~vC~~-~~~-~~~ll~Cd--~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~ 138 (145)
|-||-+ .|+ +..||+|| .|-.+.|..|.++..+|.|.|||..|....+-
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqera 60 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERA 60 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhh
Confidence 447765 344 56889999 59999999999999999999999999876553
No 36
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.07 E-value=0.00035 Score=50.99 Aligned_cols=24 Identities=33% Similarity=0.694 Sum_probs=20.7
Q ss_pred CccccCCCCCCCCCCcCCCCccccccc
Q psy17723 61 YLHPACLDLPGEMLPHMKLYDWQCSDC 87 (145)
Q Consensus 61 ~~H~~Cl~~~~~~~~~~~~~~W~C~~C 87 (145)
.||+.||+||+. .++.++|+||.|
T Consensus 1 g~H~~CL~Ppl~---~~P~g~W~Cp~C 24 (148)
T cd04718 1 GFHLCCLRPPLK---EVPEGDWICPFC 24 (148)
T ss_pred CcccccCCCCCC---CCCCCCcCCCCC
Confidence 499999999984 556899999988
No 37
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.98 E-value=8.4e-05 Score=41.66 Aligned_cols=34 Identities=24% Similarity=0.702 Sum_probs=18.5
Q ss_pred CCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723 50 GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87 (145)
Q Consensus 50 ~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 87 (145)
+.||.|++|...+|..|++..... ....|+|..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~----~~~~W~C~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVP----DGDDWLCDRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS------SS-----HHH
T ss_pred CceEEeCCCCCcCChhhCCcccCC----CCCcEECCcC
Confidence 479999999999999999985321 1236999866
No 38
>KOG4323|consensus
Probab=96.86 E-value=0.00033 Score=59.48 Aligned_cols=49 Identities=29% Similarity=0.715 Sum_probs=37.6
Q ss_pred ccccccccCC--CCCcEecCCCCCCccccCCCCCCCCC-CcCCCCccccccc
Q psy17723 39 KCKACDRDTS--AGEMIQCGKCVRYLHPACLDLPGEML-PHMKLYDWQCSDC 87 (145)
Q Consensus 39 ~C~~C~~~~~--~~~ll~C~~C~~~~H~~Cl~~~~~~~-~~~~~~~W~C~~C 87 (145)
.|.+|..++. ...||+|+.|..+||..|..+..... -.-+.+.|+|..|
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C 221 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVC 221 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhh
Confidence 4999886664 37999999999999999999875432 2235789977755
No 39
>KOG1245|consensus
Probab=96.36 E-value=0.00073 Score=64.35 Aligned_cols=52 Identities=27% Similarity=0.682 Sum_probs=45.2
Q ss_pred CccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 34 VPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 34 ~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
......|.+|...+..+.|+.|+.|...||..|+.+.+. .++.++|+|+.|.
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~---~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALS---SVPPGDWMCPSCR 1156 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhc---cCCcCCccCCccc
Confidence 345679999999998899999999999999999999764 4457799999996
No 40
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=95.87 E-value=0.007 Score=41.52 Aligned_cols=71 Identities=17% Similarity=0.447 Sum_probs=48.0
Q ss_pred ccccccccCCCCCcEecCCCCCCccccCCCCCCCCC------------CcCCCCcccccccccCccccccccCCCceecC
Q psy17723 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEML------------PHMKLYDWQCSDCKSCVACEKAQDDDKMLFCD 106 (145)
Q Consensus 39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~------------~~~~~~~W~C~~C~~C~vC~~~~~~~~ll~Cd 106 (145)
.|.+|...+ ..+.-..-+.+.|..|+-...+.. ..++...| =..|.+|++. .+..+.|.
T Consensus 2 ~C~lC~~~~---Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~----~~~C~iC~~~--~G~~i~C~ 72 (110)
T PF13832_consen 2 SCVLCPKRG---GALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRF----KLKCSICGKS--GGACIKCS 72 (110)
T ss_pred ccEeCCCCC---CcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhc----CCcCcCCCCC--CceeEEcC
Confidence 588898876 455555568999999976533210 11111111 1278899986 56789999
Q ss_pred C--ccccccccccc
Q psy17723 107 L--CDRGYHNYCIG 118 (145)
Q Consensus 107 ~--C~~~yH~~Cl~ 118 (145)
. |..+||..|..
T Consensus 73 ~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 73 HPGCSTAFHPTCAR 86 (110)
T ss_pred CCCCCcCCCHHHHH
Confidence 8 99999999984
No 41
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=95.56 E-value=0.0054 Score=45.64 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=36.9
Q ss_pred cCcccc---ccccCCCceecCCccccccccccc--------CCCCCCCC--ccccccccchhhh
Q psy17723 89 SCVACE---KAQDDDKMLFCDLCDRGYHNYCIG--------LDKIPTVG--LVFTLKKKKNKKK 139 (145)
Q Consensus 89 ~C~vC~---~~~~~~~ll~Cd~C~~~yH~~Cl~--------l~~~p~~~--W~C~~C~~~~~~~ 139 (145)
.|.+|+ ....-+.||+|-+|-.+||..||+ .+++-++. ..|..|..-.++|
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kK 64 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKK 64 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcc
Confidence 366774 333467999999999999999997 34454443 4688888766655
No 42
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.17 E-value=0.025 Score=34.42 Aligned_cols=30 Identities=30% Similarity=0.762 Sum_probs=26.1
Q ss_pred cCcccccccc-CCCceecCCccccccccccc
Q psy17723 89 SCVACEKAQD-DDKMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 89 ~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~ 118 (145)
.|.+|++.-. ++.+|+|..|..-||..|..
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 7889998653 78899999999999999974
No 43
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=93.97 E-value=0.03 Score=42.86 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=35.7
Q ss_pred cccccc----cCccccccc-----cCCCceecCCcccccccccccCCCCCCCCccccccccchhh
Q psy17723 83 QCSDCK----SCVACEKAQ-----DDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKK 138 (145)
Q Consensus 83 ~C~~C~----~C~vC~~~~-----~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~ 138 (145)
.|+-|. +|.+|...+ +.+..+.|..|...||..|... =.||.|...+++
T Consensus 144 ~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R~~~r 201 (202)
T PF13901_consen 144 SCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCARRQKR 201 (202)
T ss_pred HhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcHhHhcc
Confidence 455554 888998653 3457789999999999999762 129999865543
No 44
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.74 E-value=0.041 Score=33.47 Aligned_cols=34 Identities=21% Similarity=0.624 Sum_probs=29.4
Q ss_pred ccccccccccCC-CCCcEecCCCCCCccccCCCCC
Q psy17723 37 SDKCKACDRDTS-AGEMIQCGKCVRYLHPACLDLP 70 (145)
Q Consensus 37 ~~~C~~C~~~~~-~~~ll~C~~C~~~~H~~Cl~~~ 70 (145)
...|.+|+..-. .++.|.|..|+..||..|....
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 458999998875 5899999999999999998654
No 45
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=93.66 E-value=0.034 Score=36.95 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=30.6
Q ss_pred CccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccch
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKN 136 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~ 136 (145)
|..|..+|++-.++... |...||..|+- +... .+.=.||.|+..-
T Consensus 35 Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~w 81 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQPW 81 (85)
T ss_pred CCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCee
Confidence 33455566555666554 99999999996 5432 3345999998753
No 46
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=93.27 E-value=0.0024 Score=36.76 Aligned_cols=42 Identities=19% Similarity=0.517 Sum_probs=28.0
Q ss_pred cccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723 38 DKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87 (145)
Q Consensus 38 ~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 87 (145)
+.|.||.+.-.. +.++.-. |+..||..|+..++.. ...||.|
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~-------~~~CP~C 43 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR-------NNSCPVC 43 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH-------SSB-TTT
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh-------CCcCCcc
Confidence 468899887754 4444444 9999999999876521 2367765
No 47
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=93.11 E-value=0.015 Score=33.34 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=25.9
Q ss_pred cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKK 133 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~ 133 (145)
.|.||...-..+..++--.|+..||..|+. +... ..||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 467788765433333333499999999997 4331 3888885
No 48
>KOG0804|consensus
Probab=91.49 E-value=0.11 Score=44.13 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCccccccccccccCCC-CCcEecCCCCCCccccCCCCCCC
Q psy17723 33 PVPESDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGE 72 (145)
Q Consensus 33 ~~~~~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~ 72 (145)
...+-+.|.||...-+. ..+|.=.-|..+||-.|+..|..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~ 211 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD 211 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc
Confidence 33467899999987765 55667777999999999988753
No 49
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=91.47 E-value=0.13 Score=43.75 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=40.4
Q ss_pred cccccccccCcccccccc---CCCceecCCccccccccccc---CC------C----CCCCCccccccccc
Q psy17723 81 DWQCSDCKSCVACEKAQD---DDKMLFCDLCDRGYHNYCIG---LD------K----IPTVGLVFTLKKKK 135 (145)
Q Consensus 81 ~W~C~~C~~C~vC~~~~~---~~~ll~Cd~C~~~yH~~Cl~---l~------~----~p~~~W~C~~C~~~ 135 (145)
+=+|..| .|.+|.+.++ +-..|.||.|+.|-|+.|.= +. . ..++.++|..|-+.
T Consensus 123 ~gFC~~C-~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 123 PGFCRRC-MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CCccccC-CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 5679999 8999998653 33559999999999999972 11 0 12457999999765
No 50
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.10 E-value=0.12 Score=32.88 Aligned_cols=48 Identities=15% Similarity=0.323 Sum_probs=18.6
Q ss_pred cCccccccc---cCCCceecC--Cccccccccccc--C---CCC----CCCCccccccccch
Q psy17723 89 SCVACEKAQ---DDDKMLFCD--LCDRGYHNYCIG--L---DKI----PTVGLVFTLKKKKN 136 (145)
Q Consensus 89 ~C~vC~~~~---~~~~ll~Cd--~C~~~yH~~Cl~--l---~~~----p~~~W~C~~C~~~~ 136 (145)
.|.||...- +....++|+ .|...||..||. + +.. ....+.||.|...-
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 466777542 223458898 999999999995 1 111 11246799998653
No 51
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=90.93 E-value=0.044 Score=34.95 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=20.0
Q ss_pred ccccccccccCC---CCCcEecC--CCCCCccccCCCCCCCCCC----cCCCCccccccc
Q psy17723 37 SDKCKACDRDTS---AGEMIQCG--KCVRYLHPACLDLPGEMLP----HMKLYDWQCSDC 87 (145)
Q Consensus 37 ~~~C~~C~~~~~---~~~ll~C~--~C~~~~H~~Cl~~~~~~~~----~~~~~~W~C~~C 87 (145)
+..|.||.+... ....+.|. .|+..||..||..++...+ .+....+.||.|
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C 61 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYC 61 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCC
Confidence 457899987643 23468997 7999999999987753211 122234567766
No 52
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=90.70 E-value=0.083 Score=27.94 Aligned_cols=29 Identities=34% Similarity=0.691 Sum_probs=12.6
Q ss_pred cCccccccccCCCceecCCcccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCI 117 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl 117 (145)
.|.+|+...+++....|..|+=..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58899988766577889999999998873
No 53
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=90.66 E-value=0.095 Score=34.40 Aligned_cols=33 Identities=30% Similarity=0.745 Sum_probs=28.0
Q ss_pred ccccccccccc-CCCCCcEecCC--CCCCccccCCCCCC
Q psy17723 36 ESDKCKACDRD-TSAGEMIQCGK--CVRYLHPACLDLPG 71 (145)
Q Consensus 36 ~~~~C~~C~~~-~~~~~ll~C~~--C~~~~H~~Cl~~~~ 71 (145)
....|.+|+.. | ..|.|.. |...||+.|+....
T Consensus 35 ~~~~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 35 RKLKCSICKKKGG---ACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred hCCCCcCCCCCCC---eEEEEeCCCCCcEEChHHHccCC
Confidence 35689999999 7 9999955 99999999987643
No 54
>KOG1829|consensus
Probab=90.34 E-value=0.093 Score=46.12 Aligned_cols=48 Identities=15% Similarity=0.362 Sum_probs=33.5
Q ss_pred CCCCCCCCc-cccccccccccCCC---CCcEecCCCCCCccccCCCCCCCCC
Q psy17723 27 GRPSKKPVP-ESDKCKACDRDTSA---GEMIQCGKCVRYLHPACLDLPGEML 74 (145)
Q Consensus 27 ~~p~~~~~~-~~~~C~~C~~~~~~---~~ll~C~~C~~~~H~~Cl~~~~~~~ 74 (145)
..|....+. .+-.|..|+..-.. ..+-.|.-.|+.|+..|.......+
T Consensus 329 ~~~re~gL~aQ~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svI 380 (580)
T KOG1829|consen 329 AIPREKGLDAQNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVI 380 (580)
T ss_pred CcchhhhhhccCceecccCCCcccccccchhHhhhhhhhhCchhcccCcccc
Confidence 334444444 34589999987652 5566889999999999987765443
No 55
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=90.23 E-value=0.089 Score=34.98 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=29.5
Q ss_pred cccccccccccC-----------CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723 36 ESDKCKACDRDT-----------SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87 (145)
Q Consensus 36 ~~~~C~~C~~~~-----------~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 87 (145)
+++.|.||+... +.-.++.. .|+..||.-|+..+++.. ...-+||-|
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~----~~~~~CPmC 77 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ----SSKGQCPMC 77 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccc----cCCCCCCCc
Confidence 366666665544 33445544 499999999998886532 123467755
No 56
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=89.69 E-value=0.15 Score=34.81 Aligned_cols=33 Identities=30% Similarity=0.769 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCcEecCC--CCCCccccCCCCC
Q psy17723 36 ESDKCKACDRDTSAGEMIQCGK--CVRYLHPACLDLP 70 (145)
Q Consensus 36 ~~~~C~~C~~~~~~~~ll~C~~--C~~~~H~~Cl~~~ 70 (145)
....|.+|+..+ +.++.|.. |...||+.|+...
T Consensus 54 ~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHHC
Confidence 367899999963 38999988 9999999998664
No 57
>KOG4628|consensus
Probab=89.11 E-value=0.21 Score=41.33 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=29.0
Q ss_pred cccccccccCCCCCcEecCCCCCCccccCCCCCCC
Q psy17723 38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGE 72 (145)
Q Consensus 38 ~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~ 72 (145)
+.|.+|.+.-..++.|.=--|.+.||..|+++|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~ 264 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLT 264 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHh
Confidence 59999998876655555578999999999999974
No 58
>KOG2752|consensus
Probab=88.77 E-value=0.28 Score=40.05 Aligned_cols=29 Identities=28% Similarity=0.872 Sum_probs=22.6
Q ss_pred cCccccccc------cCCCceecCCcccccc-ccccc
Q psy17723 89 SCVACEKAQ------DDDKMLFCDLCDRGYH-NYCIG 118 (145)
Q Consensus 89 ~C~vC~~~~------~~~~ll~Cd~C~~~yH-~~Cl~ 118 (145)
+| .|.... .++.|++|..|..||| ..|++
T Consensus 130 ~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 130 FC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred eE-EecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 55 666543 2468999999999999 88885
No 59
>KOG1246|consensus
Probab=87.12 E-value=0.47 Score=43.90 Aligned_cols=46 Identities=33% Similarity=0.822 Sum_probs=39.3
Q ss_pred cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~ 135 (145)
.|..|.+...+ .++.|+.|++.||.+|+. ++.++++.|.|+.|...
T Consensus 157 ~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred hhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 67778876655 555999999999999997 88899999999999876
No 60
>KOG1473|consensus
Probab=86.01 E-value=0.45 Score=44.84 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=37.4
Q ss_pred cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKK 133 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~ 133 (145)
.|.+|.. .+.+++|..|++.||..|+. +.++|+..|-|-.|.
T Consensus 346 hcrf~~d---~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 346 HCRFCHD---LGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN 389 (1414)
T ss_pred cccccCc---ccceeecccCCceEEeeecCCccccCCCccchhhhhh
Confidence 7888887 67899999999999999997 778899999999887
No 61
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=85.44 E-value=0.34 Score=30.99 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=18.9
Q ss_pred eecCCccccccccccc--CCCCCCCCccccccc
Q psy17723 103 LFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKK 133 (145)
Q Consensus 103 l~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~ 133 (145)
+.=..|+..||..|+. |... ..||.|+
T Consensus 45 i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 45 IVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred eEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 3446799999999997 5322 3899885
No 62
>KOG1952|consensus
Probab=85.41 E-value=0.11 Score=47.32 Aligned_cols=52 Identities=17% Similarity=0.537 Sum_probs=40.9
Q ss_pred ccccccccccCCC-CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 37 SDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 37 ~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
...|.||...-.. ..+-.|.+|...||+.|+..|...........|.||.|.
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 4579999877654 678889999999999999887654333334799999996
No 63
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=84.68 E-value=0.39 Score=26.30 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=27.2
Q ss_pred CccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~ 135 (145)
|.+|.... ...+.-..|+..||..|+. +.. +...||.|+..
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCCc
Confidence 56676543 2344455699999999986 322 56779998753
No 64
>KOG1701|consensus
Probab=83.74 E-value=1.1 Score=38.09 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=47.9
Q ss_pred CCCCccccCC---------CCCCCCCCcCCCCcccccccc------cCccccccc---c-CCCceecCCccccccccccc
Q psy17723 58 CVRYLHPACL---------DLPGEMLPHMKLYDWQCSDCK------SCVACEKAQ---D-DDKMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 58 C~~~~H~~Cl---------~~~~~~~~~~~~~~W~C~~C~------~C~vC~~~~---~-~~~ll~Cd~C~~~yH~~Cl~ 118 (145)
++++||+.|. +-..- .......-+|..+- +|.+|+..- + .++.+.--.=|+-||+.|..
T Consensus 352 ~GkayHp~CF~Cv~C~r~ldgipF--tvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY~ 429 (468)
T KOG1701|consen 352 LGKAYHPGCFTCVVCARCLDGIPF--TVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCYK 429 (468)
T ss_pred cccccCCCceEEEEeccccCCccc--cccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEcccccccccee
Confidence 5778998763 22111 11123466776663 899999752 2 23344455558999999983
Q ss_pred -------CCCCC--------CCCccccccccchhh
Q psy17723 119 -------LDKIP--------TVGLVFTLKKKKNKK 138 (145)
Q Consensus 119 -------l~~~p--------~~~W~C~~C~~~~~~ 138 (145)
|+... ++..+|..|..++..
T Consensus 430 CEDCg~~LS~e~e~qgCyPld~HllCk~Ch~~Rl~ 464 (468)
T KOG1701|consen 430 CEDCGLLLSSEEEGQGCYPLDGHLLCKTCHLKRLQ 464 (468)
T ss_pred hhhcCccccccCCCCcceeccCceeechhhhhhhc
Confidence 54333 346899999776543
No 65
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=80.35 E-value=1.5 Score=25.71 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=23.1
Q ss_pred cCccccccc--cCCCceecCCccccccccccc
Q psy17723 89 SCVACEKAQ--DDDKMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 89 ~C~vC~~~~--~~~~ll~Cd~C~~~yH~~Cl~ 118 (145)
.|.+|++.- .....+.|..|...+|..|+.
T Consensus 13 ~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 13 YCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp B-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 688888754 456679999999999999987
No 66
>KOG1734|consensus
Probab=80.06 E-value=0.75 Score=36.97 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=27.1
Q ss_pred CCccccccccccccCCC----CCc---EecCCCCCCccccCCCCCC
Q psy17723 33 PVPESDKCKACDRDTSA----GEM---IQCGKCVRYLHPACLDLPG 71 (145)
Q Consensus 33 ~~~~~~~C~~C~~~~~~----~~l---l~C~~C~~~~H~~Cl~~~~ 71 (145)
.-.++.+|.+|++.-+. +.+ +.=-+|+..||-+|+..+-
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc 265 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC 265 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe
Confidence 33467899999987543 112 2224589999999998874
No 67
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=79.86 E-value=1.6 Score=25.59 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=27.1
Q ss_pred cccccccccccC--CCCCcEecCCCCCCccccCCCCC
Q psy17723 36 ESDKCKACDRDT--SAGEMIQCGKCVRYLHPACLDLP 70 (145)
Q Consensus 36 ~~~~C~~C~~~~--~~~~ll~C~~C~~~~H~~Cl~~~ 70 (145)
....|.+|+..- ....-+.|..|+..+|..|+...
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 456899998865 44788999999999999999764
No 68
>KOG1632|consensus
Probab=79.40 E-value=1.2 Score=36.98 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=35.7
Q ss_pred cccccccCC-CceecCCccccccccc--cc---CCCCCCCCccccccccchhh
Q psy17723 92 ACEKAQDDD-KMLFCDLCDRGYHNYC--IG---LDKIPTVGLVFTLKKKKNKK 138 (145)
Q Consensus 92 vC~~~~~~~-~ll~Cd~C~~~yH~~C--l~---l~~~p~~~W~C~~C~~~~~~ 138 (145)
.|....+.. .|+.|+.|-.|||..| ++ ....+...|+|..|...+..
T Consensus 64 ~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~ 116 (345)
T KOG1632|consen 64 KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDG 116 (345)
T ss_pred hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhh
Confidence 555554444 7799999999999999 87 34456679999999877643
No 69
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=79.23 E-value=0.35 Score=29.98 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=23.3
Q ss_pred cccccc-CCCCCCCCccc-cccccchhhhhhccC
Q psy17723 113 HNYCIG-LDKIPTVGLVF-TLKKKKNKKKKKKKK 144 (145)
Q Consensus 113 H~~Cl~-l~~~p~~~W~C-~~C~~~~~~~~~~~~ 144 (145)
|-.|+. -..+|.+.=+| +.|+.+..+++++.+
T Consensus 3 HkHC~~CG~~Ip~~~~fCS~~C~~~~~k~qk~~~ 36 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDESFCSPKCREEYRKRQKRMR 36 (59)
T ss_pred CCcCCcCCCcCCcchhhhCHHHHHHHHHHHHHHH
Confidence 666665 56677778899 589988887777644
No 70
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=77.56 E-value=1.4 Score=25.37 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=17.9
Q ss_pred CccccccccCCCceecC--Cccccccccccc--CCCCCCCCcccccc
Q psy17723 90 CVACEKAQDDDKMLFCD--LCDRGYHNYCIG--LDKIPTVGLVFTLK 132 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~--l~~~p~~~W~C~~C 132 (145)
|.+|.... ..-+.|. .|...+|.+|+. +....+. .||.|
T Consensus 1 C~~C~~iv--~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIV--TQGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB---SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhH--eeeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 45666531 2336788 699999999997 3333222 78876
No 71
>KOG1632|consensus
Probab=76.93 E-value=4.6 Score=33.50 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=55.3
Q ss_pred CcEecCCCCCCccccC--CCCCCCCCCcCCCCcccccccc------------cCccccccccC----CCceecCCccccc
Q psy17723 51 EMIQCGKCVRYLHPAC--LDLPGEMLPHMKLYDWQCSDCK------------SCVACEKAQDD----DKMLFCDLCDRGY 112 (145)
Q Consensus 51 ~ll~C~~C~~~~H~~C--l~~~~~~~~~~~~~~W~C~~C~------------~C~vC~~~~~~----~~ll~Cd~C~~~y 112 (145)
.++.|+.|-.+||..| ++++....+ +...|.|..|. .| +|...... ..-+-...|..++
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p--~~~~~~c~~c~~~~~~~~~~~~l~~-~~~~~~~~~~s~s~~~~~~~~~~~~ 150 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAP--KEDPKVCDECKEAQDGMSESDGLSC-VCRQDDSELLSPSFYFGKRGCQFWV 150 (345)
T ss_pred hhhccccccccccccccccCchhhcCC--ccccccccccchhhhhhhhhcccee-ecccccccccccccccCCccccccc
Confidence 8899999999999999 888754333 45689998885 33 44432211 1224567888999
Q ss_pred cccccc---CCCCCCCCccccccccchh
Q psy17723 113 HNYCIG---LDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 113 H~~Cl~---l~~~p~~~W~C~~C~~~~~ 137 (145)
|..+++ +...-...-.++.+.....
T Consensus 151 ~~~~~~~~r~~~~~~~~~t~~~~~~~~~ 178 (345)
T KOG1632|consen 151 KLQKLGRVRLEAEKNDDPTVFEVVSGTA 178 (345)
T ss_pred cchhhhhhhhhhhhcccchhhhcccccc
Confidence 999997 3333334456666655433
No 72
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=76.28 E-value=2.8 Score=22.02 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=22.2
Q ss_pred ccccccccCCCCCcEecCCCCCCccccCC
Q psy17723 39 KCKACDRDTSAGEMIQCGKCVRYLHPACL 67 (145)
Q Consensus 39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl 67 (145)
.|.+|+...+...+=.|..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 58889877754326788999999998885
No 73
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=76.17 E-value=1.3 Score=30.49 Aligned_cols=45 Identities=13% Similarity=0.332 Sum_probs=26.0
Q ss_pred cCccccccccCCCceec------CCc---cccccccccc-------CCCCCCCCcccccccc
Q psy17723 89 SCVACEKAQDDDKMLFC------DLC---DRGYHNYCIG-------LDKIPTVGLVFTLKKK 134 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~C------d~C---~~~yH~~Cl~-------l~~~p~~~W~C~~C~~ 134 (145)
.|..|++... +..+.| ..| ...|=..||- .+.+.+..|.||.|+.
T Consensus 9 ~CHqCrqKt~-~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 9 TCHQCRQKTL-DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CchhhcCCCC-CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4555655332 222445 455 5556666663 1233567899999986
No 74
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=75.23 E-value=1.1 Score=26.53 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=23.0
Q ss_pred cCcccccccc-CCCceecCCcc---ccccccccc--CCCCCCCCcccccc
Q psy17723 89 SCVACEKAQD-DDKMLFCDLCD---RGYHNYCIG--LDKIPTVGLVFTLK 132 (145)
Q Consensus 89 ~C~vC~~~~~-~~~ll~Cd~C~---~~yH~~Cl~--l~~~p~~~W~C~~C 132 (145)
+|.+|...++ ++.++.=-.|. +++|..||. +... +...|+.|
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~--~~~~C~iC 48 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINES--GNKTCEIC 48 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHc--CCCcCCCC
Confidence 3566665222 33443333343 789999997 3222 22377776
No 75
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=74.42 E-value=1.6 Score=22.83 Aligned_cols=10 Identities=40% Similarity=1.252 Sum_probs=7.3
Q ss_pred CCcccccccc
Q psy17723 79 LYDWQCSDCK 88 (145)
Q Consensus 79 ~~~W~C~~C~ 88 (145)
.+.|.|+.|.
T Consensus 2 ~g~W~C~~C~ 11 (30)
T PF00641_consen 2 EGDWKCPSCT 11 (30)
T ss_dssp SSSEEETTTT
T ss_pred CcCccCCCCc
Confidence 4589888774
No 76
>KOG1246|consensus
Probab=74.17 E-value=5.2 Score=37.17 Aligned_cols=47 Identities=26% Similarity=0.767 Sum_probs=38.9
Q ss_pred ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 87 (145)
...|..|...... .++.|+.|...||..|..++. +.++.+.|.|+.|
T Consensus 155 ~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 201 (904)
T KOG1246|consen 155 YPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPL---TRVPDGDWRCPKC 201 (904)
T ss_pred chhhhccccCCCc-cceecccccCcccccccCCCC---CcCCcCcccCCcc
Confidence 4578899888866 555999999999999999987 4455789999887
No 77
>KOG1493|consensus
Probab=74.11 E-value=0.55 Score=30.65 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=33.4
Q ss_pred cCccccccccCCCceecCCccccccccccc-CCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG-LDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~-l~~~p~~~W~C~~C~~~ 135 (145)
.|-.|..++|+-.||.= .|...||..|+. --..|...=.||.|+.+
T Consensus 33 ~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQT 79 (84)
T ss_pred cCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchhe
Confidence 45566667776666544 899999999996 22456666899999865
No 78
>KOG1952|consensus
Probab=74.03 E-value=1.1 Score=41.09 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=36.0
Q ss_pred cCccccccc-cCCCceecCCccccccccccc-----CCCCCCCCccccccccchh
Q psy17723 89 SCVACEKAQ-DDDKMLFCDLCDRGYHNYCIG-----LDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 ~C~vC~~~~-~~~~ll~Cd~C~~~yH~~Cl~-----l~~~p~~~W~C~~C~~~~~ 137 (145)
.|.||-..- ....+-.|..|...||+.|+. ....-...|.||.|...++
T Consensus 193 eCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 193 ECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred EEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 677887643 356777899999999999995 2222235799999996654
No 79
>PLN02400 cellulose synthase
Probab=73.36 E-value=6.1 Score=37.45 Aligned_cols=50 Identities=20% Similarity=0.506 Sum_probs=38.7
Q ss_pred CCccccccccccccC----CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 33 PVPESDKCKACDRDT----SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 33 ~~~~~~~C~~C~~~~----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
...+..+|.+|++.- +.+.++.|..|+-..-..|+... .+++.-.||.|+
T Consensus 32 ~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYE------RkeGnq~CPQCk 85 (1085)
T PLN02400 32 KNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYE------RKDGTQCCPQCK 85 (1085)
T ss_pred cccCCceeeecccccCcCCCCCEEEEEccCCCccccchhhee------cccCCccCcccC
Confidence 344677999999863 34789999999998888898652 335677899886
No 80
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=71.68 E-value=1.8 Score=29.78 Aligned_cols=60 Identities=20% Similarity=0.588 Sum_probs=39.0
Q ss_pred cccccccccccCCCCCcEec------CCC---CCCccccCCCCCCCC-C-CcCCCCcccccccc---cCcccccc
Q psy17723 36 ESDKCKACDRDTSAGEMIQC------GKC---VRYLHPACLDLPGEM-L-PHMKLYDWQCSDCK---SCVACEKA 96 (145)
Q Consensus 36 ~~~~C~~C~~~~~~~~ll~C------~~C---~~~~H~~Cl~~~~~~-~-~~~~~~~W~C~~C~---~C~vC~~~ 96 (145)
+...|..|.....+ ..+.| ..| ...|-..||...... + ..+....|.||.|. .|..|.+.
T Consensus 6 ~g~~CHqCrqKt~~-~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk 79 (105)
T PF10497_consen 6 NGKTCHQCRQKTLD-FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRK 79 (105)
T ss_pred CCCCchhhcCCCCC-CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhcc
Confidence 35578888775532 33456 556 888888887664322 1 22345799999997 67788764
No 81
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=71.63 E-value=2.1 Score=27.89 Aligned_cols=28 Identities=29% Similarity=0.738 Sum_probs=23.0
Q ss_pred cCccccccccCCCceecC--Cccccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCD--LCDRGYHNYCIG 118 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd--~C~~~yH~~Cl~ 118 (145)
.|.+|++. .+-.+.|. .|.+.||+.|.-
T Consensus 38 ~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 38 KCSICKKK--GGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCcCCCCC--CCeEEEEeCCCCCcEEChHHHc
Confidence 78899985 25778886 599999999984
No 82
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=71.25 E-value=2.1 Score=24.45 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=23.8
Q ss_pred cCccccccccC--CCceecCCccccccccccc
Q psy17723 89 SCVACEKAQDD--DKMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 89 ~C~vC~~~~~~--~~ll~Cd~C~~~yH~~Cl~ 118 (145)
+|.+|++.-.+ ..-+.|..|....|..|..
T Consensus 13 ~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 13 FCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred ChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 67788875433 4668899999999999976
No 83
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=70.46 E-value=1.8 Score=24.41 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=23.4
Q ss_pred cCccccccccCC-CceecCCccccccccccc
Q psy17723 89 SCVACEKAQDDD-KMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 89 ~C~vC~~~~~~~-~ll~Cd~C~~~yH~~Cl~ 118 (145)
+|.+|++.-... ..+.|..|...+|..|+.
T Consensus 13 ~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 13 KCCVCRKSIWGSFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CccccccccCcCCCCcCCCCCCchHHHHHHh
Confidence 688888754332 468899999999999976
No 84
>KOG4628|consensus
Probab=70.40 E-value=2.6 Score=35.04 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=34.3
Q ss_pred cCccccccccCCCceecCCccccccccccc--CCCCCCCCccccccccchhh
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKK 138 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~ 138 (145)
.|.+|-+....+..|.==-|...||..|++ |..- .=+||.|...-.+
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIRT 279 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCCC
Confidence 788999876555555557899999999998 4321 3479999876543
No 85
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=70.27 E-value=3.7 Score=22.69 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=20.8
Q ss_pred eecCCcccccccccccCCCCCCCCccccccccc
Q psy17723 103 LFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 103 l~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~ 135 (145)
.+|..|++.||.. ...|..+.+|..|-.+
T Consensus 2 r~C~~Cg~~Yh~~----~~pP~~~~~Cd~cg~~ 30 (36)
T PF05191_consen 2 RICPKCGRIYHIE----FNPPKVEGVCDNCGGE 30 (36)
T ss_dssp EEETTTTEEEETT----TB--SSTTBCTTTTEB
T ss_pred cCcCCCCCccccc----cCCCCCCCccCCCCCe
Confidence 4689999999942 3457778999988764
No 86
>PHA02929 N1R/p28-like protein; Provisional
Probab=69.63 E-value=1.8 Score=34.09 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=26.2
Q ss_pred cccccccccccCCCCC-----cEecCCCCCCccccCCCCCCC
Q psy17723 36 ESDKCKACDRDTSAGE-----MIQCGKCVRYLHPACLDLPGE 72 (145)
Q Consensus 36 ~~~~C~~C~~~~~~~~-----ll~C~~C~~~~H~~Cl~~~~~ 72 (145)
.+..|.+|.+...... +..=..|++.||..|+..++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh
Confidence 4678999998643211 233357899999999988753
No 87
>PF12773 DZR: Double zinc ribbon
Probab=69.27 E-value=5.3 Score=23.10 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=4.1
Q ss_pred CceecCCcc
Q psy17723 101 KMLFCDLCD 109 (145)
Q Consensus 101 ~ll~Cd~C~ 109 (145)
..++|..|+
T Consensus 28 ~~~~C~~Cg 36 (50)
T PF12773_consen 28 SKKICPNCG 36 (50)
T ss_pred CCCCCcCCc
Confidence 334455553
No 88
>PLN02436 cellulose synthase A
Probab=69.08 E-value=7.5 Score=36.85 Aligned_cols=50 Identities=16% Similarity=0.534 Sum_probs=38.2
Q ss_pred CCccccccccccccC----CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 33 PVPESDKCKACDRDT----SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 33 ~~~~~~~C~~C~~~~----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
...+..+|.+|++.- +.+.++.|..|+-..-..|+... .+++.-.||.|+
T Consensus 32 ~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeye------r~eg~~~Cpqck 85 (1094)
T PLN02436 32 QELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYE------RREGNQACPQCK 85 (1094)
T ss_pred cccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhh------hhcCCccCcccC
Confidence 334677999999863 34789999999998888998652 235677888886
No 89
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=68.50 E-value=6.3 Score=23.15 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=8.4
Q ss_pred CCCCCCccccccccch
Q psy17723 121 KIPTVGLVFTLKKKKN 136 (145)
Q Consensus 121 ~~p~~~W~C~~C~~~~ 136 (145)
.+|+ +|.||.|...+
T Consensus 30 ~Lp~-~w~CP~C~a~K 44 (47)
T PF00301_consen 30 DLPD-DWVCPVCGAPK 44 (47)
T ss_dssp GS-T-T-B-TTTSSBG
T ss_pred HCCC-CCcCcCCCCcc
Confidence 3443 59999998764
No 90
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=68.33 E-value=4.9 Score=34.43 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=23.7
Q ss_pred ccccccccCC---CCCcEecCCCCCCccccCCCC
Q psy17723 39 KCKACDRDTS---AGEMIQCGKCVRYLHPACLDL 69 (145)
Q Consensus 39 ~C~~C~~~~~---~~~ll~C~~C~~~~H~~Cl~~ 69 (145)
.|-+|..... +-..|.|+.|+.+-|..|.--
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcc
Confidence 4566666543 377899999999999999644
No 91
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=67.77 E-value=1.9 Score=22.46 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=22.2
Q ss_pred CccccccccCCCceecCCccccccccccc--CCCCCCCCcccccc
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLK 132 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C 132 (145)
|.+|... ...+.-..|+..||..|+. +. .+...||.|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~---~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLK---SGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHH---hCcCCCCCC
Confidence 4566654 2333344699899999986 22 344457665
No 92
>KOG1081|consensus
Probab=67.49 E-value=10 Score=32.72 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=24.1
Q ss_pred ccccccccccccCCCCCcEecCCCCCCccccCCCC
Q psy17723 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDL 69 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~ 69 (145)
...+.|++|..++ .++.|+++..++|..|...
T Consensus 87 ~~~~~c~vc~~gg---s~v~~~s~~~~~~r~c~~~ 118 (463)
T KOG1081|consen 87 IEPSECFVCFKGG---SLVTCKSRIQAPHRKCKPA 118 (463)
T ss_pred CCcchhccccCCC---ccceeccccccccccCcCc
Confidence 4678999999999 9999996555555555544
No 93
>KOG3612|consensus
Probab=67.28 E-value=8.2 Score=33.94 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.2
Q ss_pred cccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccC
Q psy17723 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90 (145)
Q Consensus 36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C 90 (145)
-+..|+.|.-.| ..|.|+.|.+.||..|+.+...... ....|.++-+..|
T Consensus 59 ~d~~cfechlpg---~vl~c~vc~Rs~h~~c~sp~~q~r~--~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 59 IDPFCFECHLPG---AVLKCIVCHRSFHENCQSPDPQKRN--YSVPSDKPQPYSF 108 (588)
T ss_pred CCcccccccCCc---ceeeeehhhccccccccCcchhhcc--ccccccCCccccc
Confidence 356899999999 9999999999999999998754322 2458888855433
No 94
>KOG1844|consensus
Probab=66.88 E-value=3.5 Score=35.30 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=51.8
Q ss_pred CcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCcccccccc-CCCceecCCcccccccccccC-CCCCCCCcc
Q psy17723 51 EMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD-DDKMLFCDLCDRGYHNYCIGL-DKIPTVGLV 128 (145)
Q Consensus 51 ~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~-~~~ll~Cd~C~~~yH~~Cl~l-~~~p~~~W~ 128 (145)
.+.....++..-|+.++......... ... ..| +|+..++ ++.++.|+.|.+|-|..|.+. ...+...+.
T Consensus 58 ~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~------~~c-~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~ 128 (508)
T KOG1844|consen 58 SPHGTAHEPGKGVLLSLNGSEAGSEA--REI------SRC-DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYV 128 (508)
T ss_pred ccccccccCCCCccccccccccccCc--Ccc------ccc-ccccccCCCceeeCCcccCcccCceeeeecCCCCchhce
Confidence 44445556666777666553221110 001 145 8998888 889999999999999999982 222246799
Q ss_pred ccccccchh
Q psy17723 129 FTLKKKKNK 137 (145)
Q Consensus 129 C~~C~~~~~ 137 (145)
|..|.....
T Consensus 129 c~~c~~~~~ 137 (508)
T KOG1844|consen 129 CEICTPRNK 137 (508)
T ss_pred eeeeccccc
Confidence 999988755
No 95
>PHA02862 5L protein; Provisional
Probab=66.29 E-value=1.5 Score=32.09 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=37.7
Q ss_pred cCccccccccCC-CceecCCccccccccccc--CCCCCCCCccccccccchhhhhhcc
Q psy17723 89 SCVACEKAQDDD-KMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKKKKKK 143 (145)
Q Consensus 89 ~C~vC~~~~~~~-~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~~~~~ 143 (145)
.|.+|...++++ .--.|.+--++.|..||. +. +.+.=.|+.|..+..-+++-|
T Consensus 4 iCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn--~S~k~~CeLCkteY~Ik~~yK 59 (156)
T PHA02862 4 ICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWIN--YSKKKECNLCKTKYNIKKTYV 59 (156)
T ss_pred EEEEecCcCCCCcccccccCcchhHHHHHHHHHHh--cCCCcCccCCCCeEEEEEccc
Confidence 577888765433 334566778999999997 53 456679999999887655543
No 96
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=64.31 E-value=7.4 Score=24.06 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=23.4
Q ss_pred EecCCCCCCccccCCCCCCCCCCcCCCCcccccccc-----cCccccccccCCCceecCCcc
Q psy17723 53 IQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK-----SCVACEKAQDDDKMLFCDLCD 109 (145)
Q Consensus 53 l~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-----~C~vC~~~~~~~~ll~Cd~C~ 109 (145)
..|.+|+...++ .-....|.||+|- +|..|++ ......|..|+
T Consensus 8 ~~CtSCg~~i~~-----------~~~~~~F~CPnCG~~~I~RC~~CRk---~~~~Y~CP~CG 55 (59)
T PRK14890 8 PKCTSCGIEIAP-----------REKAVKFLCPNCGEVIIYRCEKCRK---QSNPYTCPKCG 55 (59)
T ss_pred ccccCCCCcccC-----------CCccCEeeCCCCCCeeEeechhHHh---cCCceECCCCC
Confidence 357777665541 1112378888882 5666665 23445555553
No 97
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=64.29 E-value=4.3 Score=26.91 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=20.3
Q ss_pred cCccccccccCCCceecCCccccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~ 118 (145)
.|.+|++.-.. ..+.-.-|+..||..|..
T Consensus 80 ~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 78899986543 333344556999999963
No 98
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=63.56 E-value=1.9 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.389 Sum_probs=22.1
Q ss_pred CccccccccCCC-ceecCCccc---cccccccc--CCCCCCCCcccccc
Q psy17723 90 CVACEKAQDDDK-MLFCDLCDR---GYHNYCIG--LDKIPTVGLVFTLK 132 (145)
Q Consensus 90 C~vC~~~~~~~~-ll~Cd~C~~---~yH~~Cl~--l~~~p~~~W~C~~C 132 (145)
|.+|...++++. |+.=-.|.. ..|..||. +.. .+...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~--~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE--SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH--HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh--cCCCcCCCC
Confidence 567777655444 554445665 99999996 322 344456554
No 99
>KOG2114|consensus
Probab=62.30 E-value=3.6 Score=37.92 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=32.0
Q ss_pred cCccccccccCCCceecCCcccccccccccCCCCCCCCccccccccchh
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~ 137 (145)
.|..|+..- +--++=..|...||..|+. ++.-.||.|..+.+
T Consensus 842 kCs~C~~~L--dlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 842 KCSACEGTL--DLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLPELR 883 (933)
T ss_pred eecccCCcc--ccceeeeecccHHHHHhhc-----cCcccCCccchhhh
Confidence 688888632 2235567899999999987 67789999999644
No 100
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=62.00 E-value=11 Score=33.77 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=32.9
Q ss_pred CCcccccccc---------cCccccccccCCCceecCCcccccccccccCCCCCCCCccccccccchh
Q psy17723 79 LYDWQCSDCK---------SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 79 ~~~W~C~~C~---------~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~ 137 (145)
...--|+.|+ .|..|+. .+..+.|+.|+..++. ..+.+|+.|.++.+
T Consensus 51 ~~~~pc~~c~gkG~V~v~~~c~~c~G---~gkv~~c~~cG~~~~~---------~~~~lc~~c~~~~~ 106 (715)
T COG1107 51 SFEIPCPKCRGKGTVTVYDTCPECGG---TGKVLTCDICGDIIVP---------WEEGLCPECRRKPK 106 (715)
T ss_pred cCCCCCCeeccceeEEEEeecccCCC---ceeEEeeccccceecC---------cccccChhHhhCCc
Confidence 3455788886 7888876 3578889999887652 22237888887655
No 101
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=62.00 E-value=6.2 Score=21.13 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=9.2
Q ss_pred CCccccccccch
Q psy17723 125 VGLVFTLKKKKN 136 (145)
Q Consensus 125 ~~W~C~~C~~~~ 136 (145)
..|.||.|...+
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 679999997643
No 102
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=61.51 E-value=2 Score=27.19 Aligned_cols=21 Identities=29% Similarity=0.703 Sum_probs=19.1
Q ss_pred CCcEecCCCCCCccccCCCCC
Q psy17723 50 GEMIQCGKCVRYLHPACLDLP 70 (145)
Q Consensus 50 ~~ll~C~~C~~~~H~~Cl~~~ 70 (145)
..|+.|.+|+.+-|-+|+++.
T Consensus 41 kAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 41 KAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred HHHHHHhhccchhccccccHH
Confidence 479999999999999999983
No 103
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=59.37 E-value=7.5 Score=29.61 Aligned_cols=33 Identities=24% Similarity=0.672 Sum_probs=26.0
Q ss_pred ccccccccccCC-----CCCcEecCCCCCCccccCCCC
Q psy17723 37 SDKCKACDRDTS-----AGEMIQCGKCVRYLHPACLDL 69 (145)
Q Consensus 37 ~~~C~~C~~~~~-----~~~ll~C~~C~~~~H~~Cl~~ 69 (145)
.-+|.+|.+.+- .+....|..|...||..|...
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC
Confidence 457888876542 258899999999999999874
No 104
>KOG3970|consensus
Probab=59.30 E-value=5.1 Score=31.57 Aligned_cols=72 Identities=22% Similarity=0.446 Sum_probs=41.0
Q ss_pred EecCCCCCCccccCCCCC-CCCCCcCCCCcccccccccCcccccc---ccCCCceecCCccccccccccc-----CC--C
Q psy17723 53 IQCGKCVRYLHPACLDLP-GEMLPHMKLYDWQCSDCKSCVACEKA---QDDDKMLFCDLCDRGYHNYCIG-----LD--K 121 (145)
Q Consensus 53 l~C~~C~~~~H~~Cl~~~-~~~~~~~~~~~W~C~~C~~C~vC~~~---~~~~~ll~Cd~C~~~yH~~Cl~-----l~--~ 121 (145)
-.|..|-..-|+.|+--. +.++. ..=+=+ .|..|+.+ ++-.. | .|...||..|++ ++ .
T Consensus 22 NVCEhClV~nHpkCiVQSYLqWL~----DsDY~p---NC~LC~t~La~gdt~R-L---vCyhlfHW~ClneraA~lPanT 90 (299)
T KOG3970|consen 22 NVCEHCLVANHPKCIVQSYLQWLQ----DSDYNP---NCRLCNTPLASGDTTR-L---VCYHLFHWKCLNERAANLPANT 90 (299)
T ss_pred hHHHHHHhccCchhhHHHHHHHHh----hcCCCC---CCceeCCccccCccee-e---hhhhhHHHHHhhHHHhhCCCcC
Confidence 356778888899996321 11111 111123 44566653 22222 2 377899999997 22 2
Q ss_pred CCCCCccccccccch
Q psy17723 122 IPTVGLVFTLKKKKN 136 (145)
Q Consensus 122 ~p~~~W~C~~C~~~~ 136 (145)
.|. .+.||.|..+-
T Consensus 91 APa-GyqCP~Cs~ei 104 (299)
T KOG3970|consen 91 APA-GYQCPCCSQEI 104 (299)
T ss_pred CCC-cccCCCCCCcc
Confidence 344 49999998763
No 105
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=58.78 E-value=11 Score=22.40 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=10.4
Q ss_pred CCCCCccccccccch
Q psy17723 122 IPTVGLVFTLKKKKN 136 (145)
Q Consensus 122 ~p~~~W~C~~C~~~~ 136 (145)
+|+ +|.||.|...+
T Consensus 31 Lp~-~w~CP~C~a~K 44 (50)
T cd00730 31 LPD-DWVCPVCGAGK 44 (50)
T ss_pred CCC-CCCCCCCCCcH
Confidence 444 69999998654
No 106
>KOG2807|consensus
Probab=57.75 E-value=7.3 Score=32.24 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=24.5
Q ss_pred cCccccccccCCCceecCCcccccccccccCCCCCCCCccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKK 133 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~ 133 (145)
+|.+|+....+..-..|..|...|-.+|-- -+.+.--.||-|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv--~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDV--FIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchH--HHHhhhhcCCCcC
Confidence 588885443344556777777666555532 2233345677665
No 107
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=57.05 E-value=7.2 Score=22.02 Aligned_cols=42 Identities=14% Similarity=0.350 Sum_probs=23.5
Q ss_pred CccccccccCCCceecCCccccccccccc-CCCCCCCCcccccccc
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG-LDKIPTVGLVFTLKKK 134 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~-l~~~p~~~W~C~~C~~ 134 (145)
|.+|....++....+=-.|+..|...|+. +. ...-.||.|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~---~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK---GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc---CCCCCCcCCCC
Confidence 45666544333334445666555556654 32 55678888863
No 108
>PLN02189 cellulose synthase
Probab=56.12 E-value=17 Score=34.41 Aligned_cols=48 Identities=17% Similarity=0.535 Sum_probs=37.4
Q ss_pred cccccccccccc----CCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 35 PESDKCKACDRD----TSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 35 ~~~~~C~~C~~~----~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
.+..+|.+|++. .+.+..+.|..|+-..-..|+... .+++.-.||.|+
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye------r~eg~q~CpqCk 83 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE------RREGTQNCPQCK 83 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhh------hhcCCccCcccC
Confidence 456799999987 345789999999988888898652 335677889886
No 109
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=55.73 E-value=6.6 Score=19.49 Aligned_cols=16 Identities=6% Similarity=-0.265 Sum_probs=11.1
Q ss_pred CCccccccccchhhhh
Q psy17723 125 VGLVFTLKKKKNKKKK 140 (145)
Q Consensus 125 ~~W~C~~C~~~~~~~~ 140 (145)
++|.|+.|.-.+...+
T Consensus 1 g~W~C~~C~~~N~~~~ 16 (26)
T smart00547 1 GDWECPACTFLNFASR 16 (26)
T ss_pred CcccCCCCCCcChhhh
Confidence 5799999976655443
No 110
>KOG2041|consensus
Probab=54.87 E-value=12 Score=34.42 Aligned_cols=58 Identities=22% Similarity=0.575 Sum_probs=38.5
Q ss_pred CCCCCCCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccC
Q psy17723 28 RPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90 (145)
Q Consensus 28 ~p~~~~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C 90 (145)
.|+..+.....-|.+|+..-+ ..-+.|..|...| +.|+...-.+.. ..-|.|+.|+.|
T Consensus 1108 ~~p~d~~~~~vdc~~cg~~i~-~~~~~c~ec~~kf-P~CiasG~pIt~---~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1108 NPPVDPNSAKVDCSVCGAKID-PYDLQCSECQTKF-PVCIASGRPITD---NIFWLCPRCKHR 1165 (1189)
T ss_pred CCCCCCCccceeeeecCCcCC-ccCCCChhhcCcC-ceeeccCCcccc---ceEEEccccccc
Confidence 344444445678999998664 3556899999888 788866432222 348999977644
No 111
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=53.66 E-value=11 Score=23.44 Aligned_cols=27 Identities=26% Similarity=0.802 Sum_probs=17.2
Q ss_pred Ccccccccc-----cCccccccccCCCceecCCcc
Q psy17723 80 YDWQCSDCK-----SCVACEKAQDDDKMLFCDLCD 109 (145)
Q Consensus 80 ~~W~C~~C~-----~C~vC~~~~~~~~ll~Cd~C~ 109 (145)
..|.||+|- +|..|++ .+..-.|..|+
T Consensus 26 v~F~CPnCGe~~I~Rc~~CRk---~g~~Y~Cp~CG 57 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKCRK---LGNPYRCPKCG 57 (61)
T ss_pred eEeeCCCCCceeeehhhhHHH---cCCceECCCcC
Confidence 367788883 6777776 34555566664
No 112
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=53.66 E-value=8.8 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=15.6
Q ss_pred CceecCCcccccccc-cccC--CCCCCCCccccc
Q psy17723 101 KMLFCDLCDRGYHNY-CIGL--DKIPTVGLVFTL 131 (145)
Q Consensus 101 ~ll~Cd~C~~~yH~~-Cl~l--~~~p~~~W~C~~ 131 (145)
..|.|+.|.++-.+- -+.. ..+|+ .|+|..
T Consensus 2 ~WVQCd~C~KWR~lp~~~~~~~~~~~d-~W~C~~ 34 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLPEEVDPIREELPD-PWYCSM 34 (50)
T ss_dssp EEEE-TTT--EEEE-CCHHCTSCCSST-T--GGG
T ss_pred eEEECCCCCceeeCChhhCcccccCCC-eEEcCC
Confidence 357899999887764 2222 45666 899986
No 113
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=52.57 E-value=5.8 Score=22.22 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=15.5
Q ss_pred ceecCCcccccccccccCCCCCCCCccccccccch
Q psy17723 102 MLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKN 136 (145)
Q Consensus 102 ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~ 136 (145)
.+.|..|....-.++.- ......|.|+.|...+
T Consensus 2 p~rC~~C~aylNp~~~~--~~~~~~w~C~~C~~~N 34 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQF--DDGGKTWICNFCGTKN 34 (40)
T ss_dssp S-B-TTT--BS-TTSEE--ETTTTEEEETTT--EE
T ss_pred ccccCCCCCEECCcceE--cCCCCEEECcCCCCcC
Confidence 45677776655555521 1133579999998654
No 114
>PHA02929 N1R/p28-like protein; Provisional
Probab=52.50 E-value=8 Score=30.47 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=27.4
Q ss_pred cCccccccccCC-----CceecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQDDD-----KMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~~~~-----~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~ 135 (145)
.|.+|...-.+. .+.+=..|...||..|+. +.. .-.||.|+..
T Consensus 176 eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~ 225 (238)
T PHA02929 176 ECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTP 225 (238)
T ss_pred CCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCE
Confidence 566777642221 122345789999999996 432 2379999865
No 115
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.08 E-value=1.7 Score=28.38 Aligned_cols=35 Identities=17% Similarity=0.571 Sum_probs=15.3
Q ss_pred ccccccccccccC----CCCCcEecCCCCCCccccCCCC
Q psy17723 35 PESDKCKACDRDT----SAGEMIQCGKCVRYLHPACLDL 69 (145)
Q Consensus 35 ~~~~~C~~C~~~~----~~~~ll~C~~C~~~~H~~Cl~~ 69 (145)
.+..+|.+|++.- +.+.++.|..|+-..-..|+..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY 45 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY 45 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHH
Confidence 4678999998753 3478899998877666666654
No 116
>PHA02862 5L protein; Provisional
Probab=50.53 E-value=3.6 Score=30.15 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=27.3
Q ss_pred ccccccccccCCC-CCcEecCCCCCCccccCCCCCCCC
Q psy17723 37 SDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEM 73 (145)
Q Consensus 37 ~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~ 73 (145)
+++|.+|.+.++. ...=.|.+-.+..|..||..+.+.
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~ 39 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINY 39 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhc
Confidence 4689999998754 233345666899999999888743
No 117
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=48.84 E-value=8.6 Score=26.34 Aligned_cols=53 Identities=19% Similarity=0.407 Sum_probs=34.9
Q ss_pred cccccccCcCC-CCCCCCCCccccccccccccCC--CCCcEecCCCCCCccccCCC
Q psy17723 16 RQVGITLGFHA-GRPSKKPVPESDKCKACDRDTS--AGEMIQCGKCVRYLHPACLD 68 (145)
Q Consensus 16 ~~~~~~~~~~~-~~p~~~~~~~~~~C~~C~~~~~--~~~ll~C~~C~~~~H~~Cl~ 68 (145)
...|..+++-. .+|.......-+.|.+|+..|= .++.|.|..|+..++..=++
T Consensus 13 ~~~G~~vrff~i~~~dg~~~va~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 13 TDDGKEVRFFAIKKPDGSYRVAFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred cCCCEEEEEEEEECCCCCEEEEEEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 34444444444 2233333456789999976662 38999999999999976554
No 118
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=47.56 E-value=10 Score=26.23 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=13.5
Q ss_pred CCCCCccccccccchhhhh
Q psy17723 122 IPTVGLVFTLKKKKNKKKK 140 (145)
Q Consensus 122 ~p~~~W~C~~C~~~~~~~~ 140 (145)
.....|+|..|.+.+.-++
T Consensus 90 ~~~~~WlC~vC~k~rel~~ 108 (118)
T PF02318_consen 90 KKEPIWLCKVCQKQRELKK 108 (118)
T ss_dssp SSSCCEEEHHHHHHHHHHH
T ss_pred CCCCCEEChhhHHHHHHHH
Confidence 3456899999988765443
No 119
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=45.90 E-value=18 Score=24.59 Aligned_cols=32 Identities=16% Similarity=0.610 Sum_probs=24.2
Q ss_pred cccccccccccCCC--CCcEecCCCCCCccccCC
Q psy17723 36 ESDKCKACDRDTSA--GEMIQCGKCVRYLHPACL 67 (145)
Q Consensus 36 ~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~Cl 67 (145)
....|.||++.... -..+.|..|...|...-.
T Consensus 17 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~ 50 (101)
T cd07160 17 GNEVCSVCGDKASGFHYNVLSCEGCKGFFRRSVI 50 (101)
T ss_pred CCCCCeecCCcCcceEECcceehhhhhhhhhccc
Confidence 46689999986544 566789999999986543
No 120
>PHA02926 zinc finger-like protein; Provisional
Probab=45.06 E-value=5.6 Score=31.21 Aligned_cols=53 Identities=11% Similarity=0.230 Sum_probs=32.6
Q ss_pred ccccccccccccCCC------CCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 35 PESDKCKACDRDTSA------GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~------~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
..+..|.+|.+.--. .....=..|++.|+..|+..|..... .......||.|+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-~~~~~rsCPiCR 226 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-ETGASDNCPICR 226 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-ccCcCCcCCCCc
Confidence 347899999975311 11223357899999999988754321 123356677664
No 121
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=43.32 E-value=22 Score=33.87 Aligned_cols=48 Identities=19% Similarity=0.539 Sum_probs=37.6
Q ss_pred ccccccccccccC----CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 35 PESDKCKACDRDT----SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 35 ~~~~~C~~C~~~~----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
.+..+|.+|++.- +.+..+.|..|+-..-..|+.. +.+++.-.||.|+
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY------Er~eG~q~CPqCk 66 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY------ERKDGNQSCPQCK 66 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhh------hhhcCCccCCccC
Confidence 4567999999863 3478999999999998899865 2346677899886
No 122
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=43.20 E-value=6.6 Score=30.00 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=23.9
Q ss_pred cccccccccccCCCCCcEecCCCCCCccccCCCCCC
Q psy17723 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG 71 (145)
Q Consensus 36 ~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~ 71 (145)
.+..|.+|.+.-. +.+. ..|++.|+..|+..++
T Consensus 17 ~~~~CpICld~~~--dPVv-T~CGH~FC~~CI~~wl 49 (193)
T PLN03208 17 GDFDCNICLDQVR--DPVV-TLCGHLFCWPCIHKWT 49 (193)
T ss_pred CccCCccCCCcCC--CcEE-cCCCchhHHHHHHHHH
Confidence 4678999998762 2222 5799999999997653
No 123
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=42.51 E-value=9.5 Score=19.13 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=9.7
Q ss_pred CcEecCCCCCCccc
Q psy17723 51 EMIQCGKCVRYLHP 64 (145)
Q Consensus 51 ~ll~C~~C~~~~H~ 64 (145)
+|+.|..|++.|.+
T Consensus 1 ~l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 1 ELVPCPICGRKFNP 14 (25)
T ss_pred CCCcCCCCCCEECH
Confidence 36677778887753
No 124
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=42.49 E-value=10 Score=24.97 Aligned_cols=28 Identities=29% Similarity=0.654 Sum_probs=19.5
Q ss_pred eecCCccccccccccc--CCCCCCCCcccccccc
Q psy17723 103 LFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKK 134 (145)
Q Consensus 103 l~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~ 134 (145)
+.=..|..+||..|+. |.. .-.||.++.
T Consensus 49 v~wG~CnHaFH~HCI~rWL~T----k~~CPld~q 78 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDT----KGVCPLDRQ 78 (88)
T ss_pred EEEEecchHHHHHHHHHHHhh----CCCCCCCCc
Confidence 3446799999999996 543 346666654
No 125
>PRK12496 hypothetical protein; Provisional
Probab=40.62 E-value=23 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=19.4
Q ss_pred eecCCcccccccccccCCCCCCCCccccccccchhhhhhcc
Q psy17723 103 LFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKKK 143 (145)
Q Consensus 103 l~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~~~~~~ 143 (145)
..|.+|.+.|. ..+.+ =+||.|-.+-++++.++
T Consensus 128 ~~C~gC~~~~~-------~~~~~-~~C~~CG~~~~r~~~~~ 160 (164)
T PRK12496 128 KVCKGCKKKYP-------EDYPD-DVCEICGSPVKRKMVKR 160 (164)
T ss_pred EECCCCCcccc-------CCCCC-CcCCCCCChhhhcchhh
Confidence 45888877773 11222 37999987655444433
No 126
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=40.61 E-value=3.5 Score=23.91 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=21.8
Q ss_pred cCccccccccCCCceecCCcccc-cccccccCCCCCCCCccccccccch
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRG-YHNYCIGLDKIPTVGLVFTLKKKKN 136 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~-yH~~Cl~l~~~p~~~W~C~~C~~~~ 136 (145)
.|.+|...... +.---|+.. |-..|+. ..-.....||.|+..-
T Consensus 4 ~C~iC~~~~~~---~~~~pCgH~~~C~~C~~--~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 4 ECPICFENPRD---VVLLPCGHLCFCEECAE--RLLKRKKKCPICRQPI 47 (50)
T ss_dssp B-TTTSSSBSS---EEEETTCEEEEEHHHHH--HHHHTTSBBTTTTBB-
T ss_pred CCccCCccCCc---eEEeCCCChHHHHHHhH--HhcccCCCCCcCChhh
Confidence 56778764322 233345533 4444443 1112668899998753
No 127
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=40.41 E-value=3.8 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=8.7
Q ss_pred cccccccCCC-----CCCCCcccccccc
Q psy17723 112 YHNYCIGLDK-----IPTVGLVFTLKKK 134 (145)
Q Consensus 112 yH~~Cl~l~~-----~p~~~W~C~~C~~ 134 (145)
-|..|.|+.. .-...|.||.|.+
T Consensus 22 ~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 22 KHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp -SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred cccceECHHHHHHHhhccCCeECcCCcC
Confidence 5888988311 1234599999975
No 128
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=39.31 E-value=16 Score=20.35 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=8.8
Q ss_pred ecCCcccccccc
Q psy17723 104 FCDLCDRGYHNY 115 (145)
Q Consensus 104 ~Cd~C~~~yH~~ 115 (145)
.|.+|.+.||..
T Consensus 4 ~CprC~kg~Hwa 15 (36)
T PF14787_consen 4 LCPRCGKGFHWA 15 (36)
T ss_dssp C-TTTSSSCS-T
T ss_pred cCcccCCCcchh
Confidence 699999999984
No 129
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=38.85 E-value=46 Score=25.38 Aligned_cols=68 Identities=21% Similarity=0.472 Sum_probs=37.1
Q ss_pred ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccccCcccccccc--------CCCceecC
Q psy17723 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD--------DDKMLFCD 106 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~--------~~~ll~Cd 106 (145)
..+..|..|++.| -+. ..|+...-..| .... -..-.|+..+.|..|++.|. ...-+.|.
T Consensus 58 ~~~~~C~nCg~~G---H~~--~DCP~~iC~~C-~~~~-------H~s~~C~~~~~C~~Cg~~GH~~~dC~P~~~~~~~C~ 124 (190)
T COG5082 58 EENPVCFNCGQNG---HLR--RDCPHSICYNC-SWDG-------HRSNHCPKPKKCYNCGETGHLSRDCNPSKDQQKSCF 124 (190)
T ss_pred ccccccchhcccC---ccc--ccCChhHhhhc-CCCC-------cccccCCcccccccccccCccccccCcccccCccee
Confidence 4567899999888 221 12332222233 1111 01334666678888887652 12235788
Q ss_pred Ccccccccc
Q psy17723 107 LCDRGYHNY 115 (145)
Q Consensus 107 ~C~~~yH~~ 115 (145)
.|...+|..
T Consensus 125 ~C~s~~H~s 133 (190)
T COG5082 125 DCNSTRHSS 133 (190)
T ss_pred ccCCCcccc
Confidence 888888873
No 130
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=38.56 E-value=26 Score=18.35 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=12.3
Q ss_pred ccCccccccc---cCCCceecCCcccc
Q psy17723 88 KSCVACEKAQ---DDDKMLFCDLCDRG 111 (145)
Q Consensus 88 ~~C~vC~~~~---~~~~ll~Cd~C~~~ 111 (145)
++|..||.+- ..+..+.|..|+..
T Consensus 4 rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp SB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred cccCcCCccccCCCCcCEeECCCCcCE
Confidence 3677777642 35667888888753
No 131
>KOG3612|consensus
Probab=38.46 E-value=22 Score=31.38 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=34.2
Q ss_pred CCcccccccccCccccccccCCCceecCCccccccccccc-CCCC--CCCCccccccccch
Q psy17723 79 LYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG-LDKI--PTVGLVFTLKKKKN 136 (145)
Q Consensus 79 ~~~W~C~~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~-l~~~--p~~~W~C~~C~~~~ 136 (145)
+.+|+|.. |-. ++..|.|+.|-+.||..|+. -... ....|.|+.+....
T Consensus 58 N~d~~cfe------chl---pg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 58 NIDPFCFE------CHL---PGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CCCccccc------ccC---CcceeeeehhhccccccccCcchhhccccccccCCcccccC
Confidence 45786654 454 56889999999999999996 2222 23568888877543
No 132
>KOG2272|consensus
Probab=38.09 E-value=18 Score=29.04 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=37.7
Q ss_pred ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcC--CCCcccccccc------cCccccccc
Q psy17723 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHM--KLYDWQCSDCK------SCVACEKAQ 97 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~--~~~~W~C~~C~------~C~vC~~~~ 97 (145)
.-+|..|..--+.+.|.+=..=...||+.|..-..+..... -.++.+|+.|- +|..|.++-
T Consensus 137 ~YvC~KCh~~iD~~~l~fr~d~yH~yHFkCt~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpI 205 (332)
T KOG2272|consen 137 RYVCQKCHAHIDEQPLTFRGDPYHPYHFKCTTCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPI 205 (332)
T ss_pred eeehhhhhhhcccccccccCCCCCccceecccccccccchhhhhccceeccccccccCCcccccccCch
Confidence 45677777666665555555567788888865543322111 24688999885 566666554
No 133
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=37.76 E-value=35 Score=32.46 Aligned_cols=50 Identities=14% Similarity=0.493 Sum_probs=38.0
Q ss_pred CCccccccccccccC----CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 33 PVPESDKCKACDRDT----SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 33 ~~~~~~~C~~C~~~~----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
+.-+..+|.+|++.- +.+..+.|..|+-..-..|+... .+++.-.||.|+
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye------~~~g~~~cp~c~ 64 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYE------RSEGNQCCPQCN 64 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhh------hhcCCccCCccC
Confidence 344577999999863 34789999999998888898652 235677888885
No 134
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=37.62 E-value=18 Score=22.39 Aligned_cols=9 Identities=33% Similarity=1.398 Sum_probs=7.1
Q ss_pred Ccccccccc
Q psy17723 80 YDWQCSDCK 88 (145)
Q Consensus 80 ~~W~C~~C~ 88 (145)
..|.|.+|.
T Consensus 48 ~eWLCLnCQ 56 (61)
T PF05715_consen 48 KEWLCLNCQ 56 (61)
T ss_pred ceeeeecch
Confidence 589998874
No 135
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=37.42 E-value=9.2 Score=28.39 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=32.6
Q ss_pred cCccccccccCC-CceecCCccccccccccc--CCCCCCCCccccccccchhhhhhc
Q psy17723 89 SCVACEKAQDDD-KMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKKNKKKKKK 142 (145)
Q Consensus 89 ~C~vC~~~~~~~-~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~~~~~~~~ 142 (145)
.|.+|...++.. ..-.|.+=-++.|..||. +. ..+...|+.|..+.+-++..
T Consensus 10 ~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~--~s~~~~CeiC~~~Y~i~~~~ 64 (162)
T PHA02825 10 CCWICKDEYDVVTNYCNCKNENKIVHKECLEEWIN--TSKNKSCKICNGPYNIKKNY 64 (162)
T ss_pred eeEecCCCCCCccCCcccCCCchHHHHHHHHHHHh--cCCCCcccccCCeEEEEEec
Confidence 566776554321 222344555688999997 43 34678899999887655443
No 136
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=8.1 Score=31.73 Aligned_cols=45 Identities=20% Similarity=0.415 Sum_probs=32.0
Q ss_pred ccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCccccccc
Q psy17723 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC 87 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 87 (145)
...|.+|.+.--..+-+.=.-|.+.||..|++.|+. .+.-.||-|
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~------~y~~~CPvC 367 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL------GYSNKCPVC 367 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHh------hhcccCCcc
Confidence 468999988664434455456999999999998763 345667744
No 137
>KOG0827|consensus
Probab=35.91 E-value=7.1 Score=33.05 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=27.8
Q ss_pred ccccccccccCCC-CCcEecCCCCCCccccCCCCCCCC
Q psy17723 37 SDKCKACDRDTSA-GEMIQCGKCVRYLHPACLDLPGEM 73 (145)
Q Consensus 37 ~~~C~~C~~~~~~-~~ll~C~~C~~~~H~~Cl~~~~~~ 73 (145)
...|.+|.+..+. .++-.=..|+..||..||.-|.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~ 41 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEG 41 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHcc
Confidence 4589999665544 555555669999999999988654
No 138
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=35.47 E-value=26 Score=19.06 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=5.2
Q ss_pred CceecCCccc
Q psy17723 101 KMLFCDLCDR 110 (145)
Q Consensus 101 ~ll~Cd~C~~ 110 (145)
.-++|..|+.
T Consensus 21 ~R~vC~~Cg~ 30 (34)
T PF14803_consen 21 ERLVCPACGF 30 (34)
T ss_dssp -EEEETTTTE
T ss_pred cceECCCCCC
Confidence 3356666653
No 139
>KOG1734|consensus
Probab=35.47 E-value=11 Score=30.58 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=29.3
Q ss_pred cCccccccccCCC-------ceecCCcccccccccccCCCCCCCCccccccccchh
Q psy17723 89 SCVACEKAQDDDK-------MLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 ~C~vC~~~~~~~~-------ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~ 137 (145)
+|.||++.-+... -+.==.|+..||.+|..-=-+-...-.||-|.++-.
T Consensus 226 vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 226 VCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred hhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 8999998532111 122226899999999862111123457888876543
No 140
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=35.27 E-value=24 Score=21.21 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=21.2
Q ss_pred CceecCCcccccccccccCCCCCCCCcccccccc
Q psy17723 101 KMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKK 134 (145)
Q Consensus 101 ~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~ 134 (145)
..|+|..|.. |.......+...-.|+|+.|..
T Consensus 21 ~aLIC~~C~~--hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 21 YALICSKCFS--HNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred eeEECcccch--hhcccccccCCceEEEcCCCCC
Confidence 3478888865 6555543333445899999965
No 141
>COG1773 Rubredoxin [Energy production and conversion]
Probab=34.89 E-value=40 Score=20.51 Aligned_cols=8 Identities=50% Similarity=1.693 Sum_probs=6.5
Q ss_pred Cccccccc
Q psy17723 80 YDWQCSDC 87 (145)
Q Consensus 80 ~~W~C~~C 87 (145)
..|.||.|
T Consensus 35 d~w~CP~C 42 (55)
T COG1773 35 DDWVCPEC 42 (55)
T ss_pred CccCCCCC
Confidence 59999966
No 142
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=34.77 E-value=35 Score=20.73 Aligned_cols=10 Identities=30% Similarity=0.869 Sum_probs=5.4
Q ss_pred CCCccccccc
Q psy17723 78 KLYDWQCSDC 87 (145)
Q Consensus 78 ~~~~W~C~~C 87 (145)
.++..+||.|
T Consensus 25 kNfPlyCpKC 34 (55)
T PF14205_consen 25 KNFPLYCPKC 34 (55)
T ss_pred ccccccCCCC
Confidence 3445566655
No 143
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=34.72 E-value=24 Score=18.66 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=7.4
Q ss_pred CCCceecCCccc
Q psy17723 99 DDKMLFCDLCDR 110 (145)
Q Consensus 99 ~~~ll~Cd~C~~ 110 (145)
++.+++|..|..
T Consensus 16 D~~~~vCp~C~~ 27 (30)
T PF08274_consen 16 DGELLVCPECGH 27 (30)
T ss_dssp -SSSEEETTTTE
T ss_pred cCCEEeCCcccc
Confidence 566677777754
No 144
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=34.30 E-value=8.6 Score=20.98 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=22.2
Q ss_pred CccccccccCCCceecCCccccccccccc--CCCCCCCCcccccc
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLK 132 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C 132 (145)
|.+|..... ..+.=..|+..|+..|+. +.. .+.-.||.|
T Consensus 1 C~iC~~~~~--~~~~~~~C~H~fC~~C~~~~~~~--~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCGHSFCRDCLRKWLEN--SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTSEEEEHHHHHHHHHH--TSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCCCcchHHHHHHHHHh--cCCccCCcC
Confidence 456665332 222456777777777875 322 445567766
No 145
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=33.89 E-value=5.8 Score=23.85 Aligned_cols=32 Identities=25% Similarity=0.634 Sum_probs=25.3
Q ss_pred ccccccccccCCCCCcEecCCCCCCccccCCC
Q psy17723 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLD 68 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~ 68 (145)
.-.|++|...+...+|-.|.-|+++.-..|-.
T Consensus 7 ry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~ 38 (57)
T PF14445_consen 7 RYSCDLCNSSHPISELRQCVLCGRWACNSCWQ 38 (57)
T ss_pred hHhHHhhcccCcHHHHHHHhhhchhhhhhhhh
Confidence 45789999988878888888888887766643
No 146
>KOG4217|consensus
Probab=33.19 E-value=42 Score=29.33 Aligned_cols=42 Identities=14% Similarity=0.421 Sum_probs=28.8
Q ss_pred cCcCCCCCCCCCCccccccccccccCCC--CCcEecCCCCCCcc
Q psy17723 22 LGFHAGRPSKKPVPESDKCKACDRDTSA--GEMIQCGKCVRYLH 63 (145)
Q Consensus 22 ~~~~~~~p~~~~~~~~~~C~~C~~~~~~--~~ll~C~~C~~~~H 63 (145)
++.....|+.....++..|.||++...= -..-.|.+|...|-
T Consensus 254 tps~~s~psrs~~~~e~~CAVCgDnAaCqHYGvRTCEGCKGFFK 297 (605)
T KOG4217|consen 254 TPSVPSPPSRSSLSAEGLCAVCGDNAACQHYGVRTCEGCKGFFK 297 (605)
T ss_pred CCCCCCCccccCCCccceeeecCChHHhhhcCccccccchHHHH
Confidence 3344455666667789999999987621 34557888887775
No 147
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=32.45 E-value=41 Score=30.37 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=9.2
Q ss_pred CCCCCCccccccccc
Q psy17723 121 KIPTVGLVFTLKKKK 135 (145)
Q Consensus 121 ~~p~~~W~C~~C~~~ 135 (145)
.+|.+.=||+.|-..
T Consensus 36 ~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 36 EVPVDEAHCPNCGAE 50 (645)
T ss_pred CCCcccccccccCCc
Confidence 456666677777544
No 148
>KOG2930|consensus
Probab=32.38 E-value=9.6 Score=26.34 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=19.1
Q ss_pred eecCCccccccccccc--CCCCCCCCccccccccc
Q psy17723 103 LFCDLCDRGYHNYCIG--LDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 103 l~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C~~~ 135 (145)
+.=..|..+||+.|+. |. ..-.||.+.++
T Consensus 76 VaWG~CNHaFH~hCisrWlk----tr~vCPLdn~e 106 (114)
T KOG2930|consen 76 VAWGVCNHAFHFHCISRWLK----TRNVCPLDNKE 106 (114)
T ss_pred EEeeecchHHHHHHHHHHHh----hcCcCCCcCcc
Confidence 3446899999999986 43 23456665543
No 149
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=31.26 E-value=27 Score=17.16 Aligned_cols=19 Identities=32% Similarity=0.864 Sum_probs=8.0
Q ss_pred CccccccccCCCceecCCcc
Q psy17723 90 CVACEKAQDDDKMLFCDLCD 109 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~ 109 (145)
|..|+... .+...+|..|+
T Consensus 2 Cp~CG~~~-~~~~~fC~~CG 20 (23)
T PF13240_consen 2 CPNCGAEI-EDDAKFCPNCG 20 (23)
T ss_pred CcccCCCC-CCcCcchhhhC
Confidence 33444432 23344455554
No 150
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=30.37 E-value=36 Score=17.59 Aligned_cols=7 Identities=29% Similarity=0.828 Sum_probs=3.3
Q ss_pred ccccccc
Q psy17723 110 RGYHNYC 116 (145)
Q Consensus 110 ~~yH~~C 116 (145)
+.||..|
T Consensus 21 ~~~H~~C 27 (39)
T smart00132 21 KVWHPEC 27 (39)
T ss_pred ccccccC
Confidence 3455444
No 151
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=30.37 E-value=8.2 Score=32.60 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=23.5
Q ss_pred cccccccccccC--CC-----------CCcEecCCCCCCccccCCCCCCC
Q psy17723 36 ESDKCKACDRDT--SA-----------GEMIQCGKCVRYLHPACLDLPGE 72 (145)
Q Consensus 36 ~~~~C~~C~~~~--~~-----------~~ll~C~~C~~~~H~~Cl~~~~~ 72 (145)
.+..|.+|.++- .+ ..-| -||+-+|..||..|.+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL---pCGHilHl~CLknW~E 332 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRL---PCGHILHLHCLKNWLE 332 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccc---cccceeeHHHHHHHHH
Confidence 466899998862 11 1222 2788899999998864
No 152
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=30.19 E-value=33 Score=17.16 Aligned_cols=9 Identities=22% Similarity=0.601 Sum_probs=3.9
Q ss_pred CcEecCCCC
Q psy17723 51 EMIQCGKCV 59 (145)
Q Consensus 51 ~ll~C~~C~ 59 (145)
+..+|..|+
T Consensus 15 ~~~fC~~CG 23 (26)
T PF13248_consen 15 DAKFCPNCG 23 (26)
T ss_pred ccccChhhC
Confidence 344444444
No 153
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=29.94 E-value=28 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.741 Sum_probs=14.1
Q ss_pred CccccccccCCCceecCCccccc
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGY 112 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~y 112 (145)
|..||-. +...++.|..|++||
T Consensus 3 C~YCG~~-~p~~vv~C~~c~kWF 24 (152)
T PF09416_consen 3 CAYCGIH-DPSCVVKCNTCNKWF 24 (152)
T ss_dssp -TTT-----CCCEEEETTTTEEE
T ss_pred ccccCCC-CcccEeEcCCCCcEe
Confidence 5666743 367889999999988
No 154
>PF03380 DUF282: Caenorhabditis protein of unknown function, DUF282; InterPro: IPR005044 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=29.05 E-value=43 Score=18.90 Aligned_cols=15 Identities=33% Similarity=1.088 Sum_probs=13.0
Q ss_pred cCCcccccccccccC
Q psy17723 105 CDLCDRGYHNYCIGL 119 (145)
Q Consensus 105 Cd~C~~~yH~~Cl~l 119 (145)
|..|.+.|-..|.+.
T Consensus 2 Cs~C~~iYdt~CqG~ 16 (39)
T PF03380_consen 2 CSVCSKIYDTTCQGF 16 (39)
T ss_pred CcccccccCCCCccC
Confidence 778999999999984
No 155
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=28.64 E-value=32 Score=26.86 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=27.0
Q ss_pred ceecCCcccccccccccCCCCCCCCccccccccch
Q psy17723 102 MLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKN 136 (145)
Q Consensus 102 ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~ 136 (145)
.|+|..|. +|-.+..+.+.|..+++|+.|...+
T Consensus 192 alIC~~C~--hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 192 ALICPQCH--HHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred hhcccccc--ccccccccccccchheecccchhhc
Confidence 38888884 4778888888888899999998765
No 156
>KOG2462|consensus
Probab=28.63 E-value=1.4e+02 Score=24.13 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=7.9
Q ss_pred CCCceecCCccccc
Q psy17723 99 DDKMLFCDLCDRGY 112 (145)
Q Consensus 99 ~~~ll~Cd~C~~~y 112 (145)
+++-..|.-|.++|
T Consensus 212 GEKPF~C~hC~kAF 225 (279)
T KOG2462|consen 212 GEKPFSCPHCGKAF 225 (279)
T ss_pred CCCCccCCcccchh
Confidence 34445566666665
No 157
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=27.58 E-value=21 Score=19.40 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=21.4
Q ss_pred CccccccccCCCceecCCccccccccccc--CCCCCCCCcccccc
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVGLVFTLK 132 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~--l~~~p~~~W~C~~C 132 (145)
|.+|.+. ..+.++-..|+..|...|+. +.. ...||.|
T Consensus 1 C~iC~~~--~~~~~~~~~CGH~fC~~C~~~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDE--LRDPVVVTPCGHSFCKECIEKYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHC----TSB-TTT
T ss_pred CCCCCCc--ccCcCEECCCCCchhHHHHHHHHHC----cCCCcCC
Confidence 4466543 23345678888888888875 322 2567765
No 158
>KOG3362|consensus
Probab=27.56 E-value=32 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=24.0
Q ss_pred ccccccccccccCCCCCcEecCCCCCCcc-ccCCCCC
Q psy17723 35 PESDKCKACDRDTSAGEMIQCGKCVRYLH-PACLDLP 70 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H-~~Cl~~~ 70 (145)
+...+|.||+ .. ..-.|..||..|- ..|+..-
T Consensus 116 P~r~fCaVCG-~~---S~ysC~~CG~kyCsv~C~~~H 148 (156)
T KOG3362|consen 116 PLRKFCAVCG-YD---SKYSCVNCGTKYCSVRCLKTH 148 (156)
T ss_pred CcchhhhhcC-CC---chhHHHhcCCceeechhhhhc
Confidence 4467999999 44 6778999998886 4576653
No 159
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.52 E-value=32 Score=27.71 Aligned_cols=22 Identities=23% Similarity=0.649 Sum_probs=19.4
Q ss_pred ccccccccccCCCCCcEecCCC
Q psy17723 37 SDKCKACDRDTSAGEMIQCGKC 58 (145)
Q Consensus 37 ~~~C~~C~~~~~~~~ll~C~~C 58 (145)
+.+|.||+.+.+.+.|.+|-.|
T Consensus 15 dniCsVCkl~Td~~tLsfChiC 36 (285)
T PF06937_consen 15 DNICSVCKLGTDTETLSFCHIC 36 (285)
T ss_pred Cceeeeeeecccccceeeccee
Confidence 4689999999999999999766
No 160
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=26.68 E-value=43 Score=18.00 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=14.9
Q ss_pred cccccccccCC---CCCcEecCCCCCCc
Q psy17723 38 DKCKACDRDTS---AGEMIQCGKCVRYL 62 (145)
Q Consensus 38 ~~C~~C~~~~~---~~~ll~C~~C~~~~ 62 (145)
..|..|+..+- ....++|..|+..|
T Consensus 4 ~~C~~C~~~~i~~~~~~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 4 KKCSKCGGNGIVNKEDDYEVCIFCGSSF 31 (33)
T ss_pred eEcCCCCCCeEEEecCCeEEcccCCcEe
Confidence 45666766552 25566777776554
No 161
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.06 E-value=18 Score=23.17 Aligned_cols=40 Identities=20% Similarity=0.486 Sum_probs=16.9
Q ss_pred CceecCCccccccc--cccc----CCCC---CCCCccccccccchhhhh
Q psy17723 101 KMLFCDLCDRGYHN--YCIG----LDKI---PTVGLVFTLKKKKNKKKK 140 (145)
Q Consensus 101 ~ll~Cd~C~~~yH~--~Cl~----l~~~---p~~~W~C~~C~~~~~~~~ 140 (145)
....|+.|++-|-. .|-+ |+.+ -..++||..|..=..|+|
T Consensus 16 ~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~gLiSKkr 64 (70)
T PF07191_consen 16 GHYHCEACQKDYKKEAFCPDCGQPLEVLKACGAVDYFCNHCHGLISKKR 64 (70)
T ss_dssp TEEEETTT--EEEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-EE-TTT
T ss_pred CEEECccccccceecccCCCcccHHHHHHHhcccceeeccCCceeecce
Confidence 34556666654432 3333 2222 123688888876655544
No 162
>KOG4445|consensus
Probab=26.00 E-value=16 Score=30.05 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=22.5
Q ss_pred ccccCccccccccCCCceecCCccccccccccc
Q psy17723 86 DCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 86 ~C~~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~ 118 (145)
.|++|.+|.. ++..+.--.|+..+|.+||.
T Consensus 117 qCvICLygfa---~~~~ft~T~C~Hy~H~~Cla 146 (368)
T KOG4445|consen 117 QCVICLYGFA---SSPAFTVTACDHYMHFACLA 146 (368)
T ss_pred ceEEEEEeec---CCCceeeehhHHHHHHHHHH
Confidence 4557777766 34556678899999999995
No 163
>PF14369 zf-RING_3: zinc-finger
Probab=25.91 E-value=46 Score=18.10 Aligned_cols=8 Identities=38% Similarity=0.991 Sum_probs=3.4
Q ss_pred ecCCcccc
Q psy17723 104 FCDLCDRG 111 (145)
Q Consensus 104 ~Cd~C~~~ 111 (145)
.|..|+.+
T Consensus 23 ~CP~C~~g 30 (35)
T PF14369_consen 23 ACPRCHGG 30 (35)
T ss_pred CCcCCCCc
Confidence 34444443
No 164
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=25.90 E-value=49 Score=16.39 Aligned_cols=13 Identities=23% Similarity=0.789 Sum_probs=8.2
Q ss_pred CCceecCCccccc
Q psy17723 100 DKMLFCDLCDRGY 112 (145)
Q Consensus 100 ~~ll~Cd~C~~~y 112 (145)
+....|+.|++.|
T Consensus 12 ~k~~~C~~C~k~F 24 (26)
T PF13465_consen 12 EKPYKCPYCGKSF 24 (26)
T ss_dssp SSSEEESSSSEEE
T ss_pred CCCCCCCCCcCee
Confidence 4456677777665
No 165
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.64 E-value=39 Score=19.51 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=16.1
Q ss_pred CccccccccCCCceecCCccccccccccc
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIG 118 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~ 118 (145)
|..|++.-.++.+++ ..=++.||..|+.
T Consensus 1 C~~C~~~I~~~~~~~-~~~~~~~H~~Cf~ 28 (58)
T PF00412_consen 1 CARCGKPIYGTEIVI-KAMGKFWHPECFK 28 (58)
T ss_dssp BTTTSSBESSSSEEE-EETTEEEETTTSB
T ss_pred CCCCCCCccCcEEEE-EeCCcEEEccccc
Confidence 556676544444331 3445678888873
No 166
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=24.93 E-value=34 Score=20.87 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=23.2
Q ss_pred eecCCcccccccccc-----cCCCCCCCCccccccccchhhh
Q psy17723 103 LFCDLCDRGYHNYCI-----GLDKIPTVGLVFTLKKKKNKKK 139 (145)
Q Consensus 103 l~Cd~C~~~yH~~Cl-----~l~~~p~~~W~C~~C~~~~~~~ 139 (145)
+.|-.||+-+-+.=- .|.+-|...+.|..|...-..+
T Consensus 3 vkC~lCdk~~~Id~~~~~aKrLrnrPi~tYmC~eC~~RI~~~ 44 (56)
T PF09963_consen 3 VKCILCDKKEEIDEDTPEAKRLRNRPIHTYMCDECKERIREE 44 (56)
T ss_pred eEEEecCCEEEeccCCHHHHHhhcCCCcceeChhHHHHHhHH
Confidence 345555554433222 1777888899999998765443
No 167
>cd06970 NR_DBD_PNR DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of the nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hing
Probab=24.87 E-value=43 Score=22.33 Aligned_cols=31 Identities=16% Similarity=0.523 Sum_probs=22.9
Q ss_pred cccccccccccCCC--CCcEecCCCCCCccccC
Q psy17723 36 ESDKCKACDRDTSA--GEMIQCGKCVRYLHPAC 66 (145)
Q Consensus 36 ~~~~C~~C~~~~~~--~~ll~C~~C~~~~H~~C 66 (145)
+...|.||+..... -..+.|..|...|...-
T Consensus 5 p~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v 37 (92)
T cd06970 5 PGLLCRVCGDTSSGKHYGIYACNGCSGFFKRSV 37 (92)
T ss_pred CCCCCeecCCcCcccEECccEEeeeeeEeeeee
Confidence 45579999986644 55678999999997533
No 168
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.72 E-value=67 Score=22.85 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=7.6
Q ss_pred CcEecCCCCCCcc
Q psy17723 51 EMIQCGKCVRYLH 63 (145)
Q Consensus 51 ~ll~C~~C~~~~H 63 (145)
....|..|+..|-
T Consensus 69 ~~~~C~~CG~~~~ 81 (135)
T PRK03824 69 AVLKCRNCGNEWS 81 (135)
T ss_pred eEEECCCCCCEEe
Confidence 4556666665543
No 169
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.68 E-value=58 Score=17.69 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=4.9
Q ss_pred EecCCCCCCcc
Q psy17723 53 IQCGKCVRYLH 63 (145)
Q Consensus 53 l~C~~C~~~~H 63 (145)
+.|..|...|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 34444444443
No 170
>PF05458 Siva: Cd27 binding protein (Siva); InterPro: IPR022773 Siva binds to the CD27 cytoplasmic tail. It has a DD homology region, a box-B-like ring finger, and a zinc finger-like domain. Overexpression of Siva in various cell lines induces apoptosis, suggesting an important role for Siva in the CD27-transduced apoptotic pathway []. Siva-1 binds to and inhibits BCL-X(L)-mediated protection against UV radiation-induced apoptosis. Indeed, the unique amphipathic helical region (SAH) present in Siva-1 is required for its binding to BCL-X(L) and sensitising cells to UV radiation. Natural complexes of Siva-1/BCL-X(L) are detected in HUT78 and murine thymocyte, suggesting a potential role for Siva-1 in regulating T cell homeostasis []. This family contains both Siva-1 and the shorter Siva-2 lacking the sequence coded by exon 2. It has been suggested that Siva-2 could regulate the function of Siva-1 [].
Probab=24.07 E-value=89 Score=23.39 Aligned_cols=27 Identities=30% Similarity=0.767 Sum_probs=13.4
Q ss_pred ccccccccCCCCCcEecCCCCCCccccCC
Q psy17723 39 KCKACDRDTSAGEMIQCGKCVRYLHPACL 67 (145)
Q Consensus 39 ~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl 67 (145)
.|..|.... .....|..|.+..-..|.
T Consensus 113 aCs~C~r~~--~~~~~C~~Cdr~lC~~C~ 139 (175)
T PF05458_consen 113 ACSVCQRTQ--RIKSVCSQCDRALCESCI 139 (175)
T ss_pred cCcCCcCCC--CCCccccccCcHHHHHHH
Confidence 466665332 134455555555554444
No 171
>KOG1081|consensus
Probab=23.87 E-value=56 Score=28.23 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=28.0
Q ss_pred cCccccccccCCCceecCCcccccccccccCCCCCCCCccccccccc
Q psy17723 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 89 ~C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~ 135 (145)
.|.+|.+ ++.+|.|+.+..++|-.|... ..|+..|.|..|+..
T Consensus 91 ~c~vc~~---ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 91 ECFVCFK---GGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRAF 133 (463)
T ss_pred hhccccC---CCccceeccccccccccCcCc-cCcccccCCcceeee
Confidence 7888887 568889997777777777653 233444555544433
No 172
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=23.86 E-value=47 Score=19.59 Aligned_cols=27 Identities=22% Similarity=0.672 Sum_probs=17.8
Q ss_pred ccccccccccCCC-------CCcEecCCCCCCcc
Q psy17723 37 SDKCKACDRDTSA-------GEMIQCGKCVRYLH 63 (145)
Q Consensus 37 ~~~C~~C~~~~~~-------~~ll~C~~C~~~~H 63 (145)
...|..|+..... +..++|..|+..|-
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~ 36 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYK 36 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccHHHH
Confidence 4468888766532 33578888887765
No 173
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=23.55 E-value=68 Score=17.01 Aligned_cols=21 Identities=29% Similarity=0.792 Sum_probs=10.6
Q ss_pred CccccccccCC-CceecCCccc
Q psy17723 90 CVACEKAQDDD-KMLFCDLCDR 110 (145)
Q Consensus 90 C~vC~~~~~~~-~ll~Cd~C~~ 110 (145)
|.+|.+..... ....|..|+.
T Consensus 3 C~vC~~~k~rk~T~~~C~~C~v 24 (32)
T PF13842_consen 3 CKVCSKKKRRKDTRYMCSKCDV 24 (32)
T ss_pred CeECCcCCccceeEEEccCCCC
Confidence 45555433222 4456777764
No 174
>KOG2932|consensus
Probab=23.35 E-value=49 Score=27.38 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=18.1
Q ss_pred ceecCCccc---c-------cccccccCCCCCCCCccccccccc
Q psy17723 102 MLFCDLCDR---G-------YHNYCIGLDKIPTVGLVFTLKKKK 135 (145)
Q Consensus 102 ll~Cd~C~~---~-------yH~~Cl~l~~~p~~~W~C~~C~~~ 135 (145)
+-+||+||. . -|.+||+-... +.+-.|+.|...
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~-~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS-DSDKICPLCDDR 132 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc-CccccCcCcccH
Confidence 455666663 2 37888871111 114578888754
No 175
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.00 E-value=63 Score=16.22 Aligned_cols=8 Identities=25% Similarity=1.132 Sum_probs=5.1
Q ss_pred Cccccccc
Q psy17723 80 YDWQCSDC 87 (145)
Q Consensus 80 ~~W~C~~C 87 (145)
..+.||+|
T Consensus 15 v~f~CPnC 22 (24)
T PF07754_consen 15 VPFPCPNC 22 (24)
T ss_pred ceEeCCCC
Confidence 36677766
No 176
>KOG3053|consensus
Probab=22.83 E-value=26 Score=28.15 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=33.8
Q ss_pred cCccccccccCCCc------eecCCccccccccccc--CCC----CCCCCccccccccchh
Q psy17723 89 SCVACEKAQDDDKM------LFCDLCDRGYHNYCIG--LDK----IPTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 ~C~vC~~~~~~~~l------l~Cd~C~~~yH~~Cl~--l~~----~p~~~W~C~~C~~~~~ 137 (145)
.|.+|-.++.+..+ -.|.+=.+|.|..||. +++ .|...-.|+.|+.+..
T Consensus 22 ~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 22 CCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred eEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 67788776544333 3577777999999996 222 2344678999998865
No 177
>KOG3799|consensus
Probab=22.51 E-value=32 Score=24.98 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=28.2
Q ss_pred cCccccccc-cCCCceecCCccccccccccc-CCCC-CCCCccccccccchh
Q psy17723 89 SCVACEKAQ-DDDKMLFCDLCDRGYHNYCIG-LDKI-PTVGLVFTLKKKKNK 137 (145)
Q Consensus 89 ~C~vC~~~~-~~~~ll~Cd~C~~~yH~~Cl~-l~~~-p~~~W~C~~C~~~~~ 137 (145)
+|.+|.++- .++.--.|..|.--|-..|-+ .+.. .+..|.|..|.+.+-
T Consensus 67 tC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 67 TCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred chhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 566776532 123334566666666666655 2222 345788888887654
No 178
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.39 E-value=30 Score=29.33 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=32.6
Q ss_pred CCCCCCccccccccccccCCCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 29 PSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 29 p~~~~~~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
|....+.....|.+|...-....+ ..|++.|...|+...+.. .-.||.|.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~Pvi---tpCgH~FCs~CI~~~l~~-------~~~CP~Cr 67 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVL---TSCSHTFCSLCIRRCLSN-------QPKCPLCR 67 (397)
T ss_pred ccccccccccCCCcCchhhhCccC---CCCCCchhHHHHHHHHhC-------CCCCCCCC
Confidence 344455667899999987633222 478999999998764321 23677765
No 179
>KOG0823|consensus
Probab=21.92 E-value=86 Score=24.64 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=23.0
Q ss_pred ccccccccccccCCCCCcEecCCCCCCccccCCCCCCCC
Q psy17723 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEM 73 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~~~ll~C~~C~~~~H~~Cl~~~~~~ 73 (145)
.+.--|.||.+...+..+-. |++-|---||-.|+..
T Consensus 45 ~~~FdCNICLd~akdPVvTl---CGHLFCWpClyqWl~~ 80 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTL---CGHLFCWPCLYQWLQT 80 (230)
T ss_pred CCceeeeeeccccCCCEEee---cccceehHHHHHHHhh
Confidence 34557999998774444434 4666666677776654
No 180
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.17 E-value=27 Score=27.99 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=0.0
Q ss_pred CccccccccCCCceecCCcccccccccccCCCCCCCCccccccccchhhhh
Q psy17723 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKK 140 (145)
Q Consensus 90 C~vC~~~~~~~~ll~Cd~C~~~yH~~Cl~l~~~p~~~W~C~~C~~~~~~~~ 140 (145)
|.+|-. .-....|-.|+..|-..|+-..---...-+||.|+.+-..++
T Consensus 218 C~lC~e---~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 218 CFLCLE---EPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred eeeeec---ccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
No 181
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=21.13 E-value=79 Score=18.12 Aligned_cols=9 Identities=0% Similarity=-0.518 Sum_probs=4.7
Q ss_pred Ccccccccc
Q psy17723 126 GLVFTLKKK 134 (145)
Q Consensus 126 ~W~C~~C~~ 134 (145)
...||.|..
T Consensus 26 ~~~CP~Cg~ 34 (52)
T TIGR02605 26 LATCPECGG 34 (52)
T ss_pred CCCCCCCCC
Confidence 345555554
No 182
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=21.03 E-value=39 Score=18.93 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=10.4
Q ss_pred Cccccccccccc--CCCCCCCCcccccc
Q psy17723 107 LCDRGYHNYCIG--LDKIPTVGLVFTLK 132 (145)
Q Consensus 107 ~C~~~yH~~Cl~--l~~~p~~~W~C~~C 132 (145)
.|+..|=..|+. ........+.||.|
T Consensus 15 ~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 15 PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 444444444554 22222233888887
No 183
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=20.98 E-value=56 Score=16.11 Aligned_cols=9 Identities=44% Similarity=1.482 Sum_probs=5.0
Q ss_pred ecCCccccc
Q psy17723 104 FCDLCDRGY 112 (145)
Q Consensus 104 ~Cd~C~~~y 112 (145)
.|+.|++.|
T Consensus 3 ~C~~C~k~f 11 (27)
T PF12171_consen 3 YCDACDKYF 11 (27)
T ss_dssp BBTTTTBBB
T ss_pred CcccCCCCc
Confidence 456666554
No 184
>PLN02195 cellulose synthase A
Probab=20.94 E-value=69 Score=30.39 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=34.7
Q ss_pred ccccccccccC----CCCCcEecCCCCCCccccCCCCCCCCCCcCCCCcccccccc
Q psy17723 37 SDKCKACDRDT----SAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88 (145)
Q Consensus 37 ~~~C~~C~~~~----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 88 (145)
..+|.+|++.- +.+..+.|..|+-..-..|+... .+++.-.||.|+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeye------r~eg~q~CpqCk 55 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYE------IKEGRKVCLRCG 55 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhh------hhcCCccCCccC
Confidence 55899999843 34789999999998888888652 235677788774
No 185
>KOG2879|consensus
Probab=20.90 E-value=73 Score=25.85 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=21.3
Q ss_pred ccccccccccccCCCCCcEecCC-CCCCccccCCCCC
Q psy17723 35 PESDKCKACDRDTSAGEMIQCGK-CVRYLHPACLDLP 70 (145)
Q Consensus 35 ~~~~~C~~C~~~~~~~~ll~C~~-C~~~~H~~Cl~~~ 70 (145)
..+..|.+|+.... +-.=.. |+.-|-..|+...
T Consensus 237 t~~~~C~~Cg~~Pt---iP~~~~~C~HiyCY~Ci~ts 270 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---IPHVIGKCGHIYCYYCIATS 270 (298)
T ss_pred cCCceeeccCCCCC---CCeeeccccceeehhhhhhh
Confidence 45678999998773 222223 5667777777653
No 186
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=43 Score=27.85 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=14.2
Q ss_pred CCCccccccccchhhhhh
Q psy17723 124 TVGLVFTLKKKKNKKKKK 141 (145)
Q Consensus 124 ~~~W~C~~C~~~~~~~~~ 141 (145)
++.|.||.|.+++..+|+
T Consensus 282 ~d~W~CpkC~~k~ss~K~ 299 (415)
T COG5533 282 KDAWRCPKCGRKESSRKR 299 (415)
T ss_pred cccccCchhcccccchhe
Confidence 457999999988776664
Done!