RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17723
(145 letters)
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 70.8 bits (173), Expect = 5e-17
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
C CD + C C ++ H CLD+ L WQC +CK C C+
Sbjct: 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKR---AGWQCPECKVCQNCK 61
Query: 95 KAQDDDKMLFCDLCDRGYHNYCIG 118
++ +D KML CD CD+GYH +C+
Sbjct: 62 QSGEDSKMLVCDTCDKGYHTFCLQ 85
Score = 40.0 bits (93), Expect = 3e-05
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 82 WQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGL 119
S +C C+ D FC C + YH C+ +
Sbjct: 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDI 39
Score = 39.6 bits (92), Expect = 4e-05
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVAC 93
PE C+ C + +M+ C C + H CL + +P W+C +C+ C++
Sbjct: 52 PECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPT---NGWKCKNCRICISG 107
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 70.1 bits (171), Expect = 1e-16
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 43 CDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKM 102
+ E++ C C R HP CL M +K Y WQC +CKSC+ C +++DD++
Sbjct: 14 NKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQL 73
Query: 103 LFCDLCDRGYHNYCIG--LDKIP 123
LFCD CDRGYH YC+ + + P
Sbjct: 74 LFCDDCDRGYHMYCLNPPVAEPP 96
Score = 34.6 bits (79), Expect = 0.003
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
E C C + +++ C C R H CL+ P + W C C + +
Sbjct: 56 IECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPP---VAEPPEGSWSCHLCWELLKEK 112
Query: 95 KA 96
+
Sbjct: 113 AS 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 67.4 bits (164), Expect = 1e-15
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVAC-EKAQ 97
K +R+ E+I C C HP+CL E+ +K WQC +CK+C +C ++ +
Sbjct: 13 GTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK 72
Query: 98 DDDKMLFCDLCDRGYHNYCIG--LDKIP 123
+ D MLFCD CDRG+H C L ++P
Sbjct: 73 NADNMLFCDSCDRGFHMECCDPPLTRMP 100
Score = 28.5 bits (63), Expect = 0.40
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 40 CKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
D+ +A M+ C C R H C D P L M W C C+
Sbjct: 65 SSCRDQGKNADNMLFCDSCDRGFHMECCDPP---LTRMPKGMWICQICRP 111
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 62.1 bits (150), Expect = 8e-13
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 16 RQVGITLGFHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLP 75
R++ + + + D+ +R M+ R P+C +
Sbjct: 112 RELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMR-RKSGPSCKHCKDD--- 167
Query: 76 HMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVG 126
+ C C C C QD DK L CD CD +H YC+ L +P+
Sbjct: 168 ----VNRLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSED 215
Score = 35.9 bits (82), Expect = 0.002
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
C C + + C +C H CLD P +P +W C +C++
Sbjct: 173 RVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSED--EWYCPECRN 224
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 55.3 bits (133), Expect = 3e-11
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 80 YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPT 124
Q D C C + +DDK+LFCD CD YH +C+ L +IP
Sbjct: 9 SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPR 55
Score = 34.9 bits (80), Expect = 0.002
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
+S C+ C R +++ C C H CL P +P W+C C +
Sbjct: 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPR---GIWRCPKCILAECKQ 70
Query: 95 KAQD 98
+
Sbjct: 71 PPEA 74
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 49.5 bits (118), Expect = 4e-09
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 55 CGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHN 114
+ P+C + + C C C C QD DK L CD CD +H
Sbjct: 2 PLGSPEFSGPSCKHCKDD-------VNRLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHI 53
Query: 115 YCIG--LDKIPTVG 126
YC+ L +P+
Sbjct: 54 YCLDPPLSSVPSED 67
Score = 32.1 bits (73), Expect = 0.013
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
C C + + C +C H CLD P +P +W C +C++
Sbjct: 25 RVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSED--EWYCPECRN 76
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 47.9 bits (114), Expect = 1e-08
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 80 YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIPTVG 126
+ C C C C QD DK L CD CD +H YC+ L +P+
Sbjct: 12 VNRLCRVCA-CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSED 59
Score = 30.9 bits (70), Expect = 0.028
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
C C + + C +C H CLD P +P +W C +C++
Sbjct: 17 RVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSED--EWYCPECRN 68
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 46.3 bits (110), Expect = 6e-08
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 81 DWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
+ +C C C C + + L CD C+ YH YC+ LDK+P
Sbjct: 21 EKKCHSCS-CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVP 64
Score = 29.4 bits (66), Expect = 0.12
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
S C+ C + C +C H CL+ P + +P + W C CK+
Sbjct: 25 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVP--EEEYWYCPSCKT 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 42.7 bits (101), Expect = 7e-07
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCI--GLDKIP 123
C C K +DDK++ CD C++ +H +C+ L ++P
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVP 38
Score = 31.9 bits (73), Expect = 0.009
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
+CK C + ++I C +C + H CL +P +WQC C+
Sbjct: 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD---GEWQCPACQPA 50
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 41.8 bits (98), Expect = 3e-06
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 69 LPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPT 124
+ HM+ + + C C ++Q+ + +LFCD+C+ H C G+ IP
Sbjct: 1 MGHHHHHHMQSLIDEDAVCSIC-MDGESQNSNVILFCDMCNLAVHQECYGVPYIPE 55
Score = 25.6 bits (56), Expect = 2.8
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 22 LGFHAGRPSKKPVPESDKCKACDRDTSAGE--MIQCGKCVRYLHPACLDLPGEMLPHMKL 79
+G H + + E C C S ++ C C +H C +P +P
Sbjct: 1 MGHHHHHHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEG-- 56
Query: 80 YDWQCSDCKSC 90
W C C
Sbjct: 57 -QWLCRHCLQS 66
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 41.0 bits (96), Expect = 6e-06
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKKK 143
C C K D M+ CD CD YH C+G+ P + + K NK KK KK
Sbjct: 21 CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDKK 74
Score = 32.5 bits (74), Expect = 0.008
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 36 ESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEK 95
+ C C++ MI C C + H C+ + M+ W C C + + +K
Sbjct: 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQ---WFCPKCANKIKKDK 73
Query: 96 AQ 97
Sbjct: 74 KH 75
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 39.1 bits (91), Expect = 3e-05
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
+ C+ C + G+++ C +C H C + +P +W CS C +
Sbjct: 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPG---EEWSCSLCHVLPDLK 76
Query: 95 KAQDDDK 101
+ D +
Sbjct: 77 EEDVDLQ 83
Score = 36.5 bits (84), Expect = 4e-04
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 80 YDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYC 116
+ C C Q ++ C+ C+ +H C
Sbjct: 18 FGTLDDSATICRVC---QKPGDLVMCNQCEFCFHLDC 51
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 38.1 bits (88), Expect = 9e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 86 DCKSCVAC--EKAQDDDKMLFCDLCDRGYHNYCIGLDKIPT 124
+ C C ++Q+ + +LFCD+C+ H C G+ IP
Sbjct: 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPE 64
Score = 26.5 bits (58), Expect = 1.5
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 29 PSKKPVPESDKCKACDRDTSAGE--MIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSD 86
S+ + E C C S ++ C C +H C +P +P W C
Sbjct: 17 SSQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEG---QWLCRH 71
Query: 87 CKSCVACEK 95
C A
Sbjct: 72 CLQSRARPA 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 36.2 bits (84), Expect = 2e-04
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
D C C + G+++ C C R H CLD P + +P W C C+
Sbjct: 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPK---GMWICPRCQD 55
Score = 33.9 bits (78), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
C + ++L CD C R YH C+ L IP
Sbjct: 12 CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIP 44
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 35.9 bits (83), Expect = 3e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 83 QCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
C C + ++L CD C R YH C+ L IP
Sbjct: 1 HMIHEDFCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIP 40
Score = 34.3 bits (79), Expect = 0.001
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
D C C + G+++ C C R H CLD P + +P W C C+
Sbjct: 6 DFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPK---GMWICPRCQD 51
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 35.9 bits (83), Expect = 4e-04
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
D+C C GE+I C C R H ACL P +P W+CS C E
Sbjct: 8 EDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSG---TWRCSSCLQATVQE 59
Score = 31.7 bits (72), Expect = 0.013
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
C +D +++ CD C R +H C+ L +IP
Sbjct: 11 CAVCRDGGELICCDGCPRAFHLACLSPPLREIP 43
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 37.5 bits (86), Expect = 6e-04
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKA 96
+ C+ C + G+++ C +C H C + +P +W CS C ++
Sbjct: 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGE---EWSCSLCHVLPDLKEE 55
Query: 97 QDDDKMLFCDLCDRGYHNYCIGLDKIPTVGL 127
+ D K V L
Sbjct: 56 DGSLSLDGADSTGVVAKLSPANQRKCERVLL 86
Score = 34.5 bits (78), Expect = 0.006
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIGL 119
S C Q ++ C+ C+ +H C
Sbjct: 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLP 31
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 35.1 bits (81), Expect = 6e-04
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 37 SDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
D C+ C + GE+I C C R H CLD E P W C C+
Sbjct: 11 QDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPE---GKWSCPHCEKE 58
Score = 34.3 bits (79), Expect = 0.001
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 82 WQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
++ C C Q +++ CD C R YH C+ ++K P
Sbjct: 6 YETDHQDYCEVC---QQGGEIILCDTCPRAYHMVCLDPDMEKAP 46
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 36.8 bits (85), Expect = 0.001
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
C+ + + CD C YH C+G+ +
Sbjct: 11 CICKTPEDESKFYIGCDRCQNWYHGRCVGILQSE 44
Score = 31.8 bits (72), Expect = 0.044
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 2/80 (2%)
Query: 31 KKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
C + + I C +C + H C+ + + ++ C C+S
Sbjct: 2 PLGSDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELID--EYVCPQCQST 59
Query: 91 VACEKAQDDDKMLFCDLCDR 110
+ R
Sbjct: 60 EDAMTVLTPLTEKDYEGLKR 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 34.7 bits (80), Expect = 0.001
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
+ C+ C GE++ C C H CL+ P +P+ +W C C
Sbjct: 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNG---EWLCPRCTC 55
Score = 33.1 bits (76), Expect = 0.003
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 81 DWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
D C+ C +D ++L CD C YH +C+ L +IP
Sbjct: 6 DHHMEFCRVC------KDGGELLCCDTCPSSYHIHCLNPPLPEIP 44
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 34.9 bits (80), Expect = 0.001
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 36 ESDKCKACDRDTS--AGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVAC 93
S C C + S EM+ C KC + H C + W C C
Sbjct: 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64
Query: 94 EK 95
++
Sbjct: 65 KR 66
Score = 33.7 bits (77), Expect = 0.003
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 90 CVACEKAQ--DDDKMLFCDLCDRGYHNYC 116
C C++ ++M+ CD C +GYH C
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLC 37
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A
{Homo sapiens} PDB: 3s32_A
Length = 177
Score = 35.9 bits (82), Expect = 0.002
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 52 MIQCGKCVRYLHPACLD-LPGEMLPHMKLYDWQCSDC 87
+QCG C ++ LP M Y + C+ C
Sbjct: 20 ELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVC 56
Score = 27.5 bits (60), Expect = 1.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 93 CEKAQD-DDKMLFCDLCDRGYHNYCIGLDKIPTVG 126
E + + L C +C + + G+D +
Sbjct: 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLP 44
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 33.7 bits (77), Expect = 0.002
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 90 CVACEKAQDDDK-MLFCDLCDRGYHNYCIGLDK 121
C AC ++ D+ + CDLC+ +H C+ +
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITP 41
Score = 32.1 bits (73), Expect = 0.010
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 36 ESDKCKACDRDTSAGE-MIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
S +C AC +A E I C C + H C+ + H+K ++C C +
Sbjct: 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK--QYKCPSCSN 57
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 33.0 bits (75), Expect = 0.005
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYCIGLDK 121
C + ++ M+ CD C+ +H C+G+ +
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISE 49
Score = 30.7 bits (69), Expect = 0.043
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 43 CDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLY--DWQCSDCK 88
C + + MI C +C + H C+ + ++ D+ C +C
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 33.1 bits (75), Expect = 0.007
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 89 SCVACEKA--QDDDKMLFCDLCDRGYHNYC 116
+CV C + ++++ C C YH C
Sbjct: 18 ACVVCRQMTVASGNQLVECQECHNLYHQDC 47
Score = 29.3 bits (65), Expect = 0.18
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 28 RPSKKPVPESDKCKACDRDTS--AGEMIQCGKCVRYLHPACLDLP-GEMLPHMKLYDWQC 84
+ C C + T ++++C +C H C + + W C
Sbjct: 7 GADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYC 66
Query: 85 SDCKSCVACEK 95
+ C +
Sbjct: 67 ARCTRQMKRMA 77
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 31.6 bits (72), Expect = 0.010
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 43 CDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
C + + MI+C +C ++H +C + +P + C C+
Sbjct: 9 CMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE----VFVCQKCR 50
Score = 29.6 bits (67), Expect = 0.058
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYCIGLDK 121
C K M+ C+ C H C + K
Sbjct: 9 CMKPFAGRPMIECNECHTWIHLSCAKIRK 37
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 34.3 bits (77), Expect = 0.010
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 81 DWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLD 120
+ + + ++D + + CD C YH C GL+
Sbjct: 37 EKEKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLE 76
Score = 30.4 bits (67), Expect = 0.18
Identities = 14/83 (16%), Positives = 18/83 (21%), Gaps = 3/83 (3%)
Query: 1 METNQKAEGSGSNFCRQVGITLGFHAGRPSKKPVPESDKCKACDRDTSAGE---MIQCGK 57
ME E C + A KK E I C
Sbjct: 4 MEQKTPKESDRCGGCGKFTHEDDLIALEEEKKKEKEKPLMSKKKSHHHKKNDFQWIGCDS 63
Query: 58 CVRYLHPACLDLPGEMLPHMKLY 80
C + H C L + +
Sbjct: 64 CQTWYHFLCSGLEQFEYYLYEKF 86
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 33.0 bits (74), Expect = 0.018
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 41 KACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKL----YDWQCSDCKSCVACEKA 96
K D D +M+QCGKC R++H C +L EM + + C +C E
Sbjct: 10 KCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEWR 69
Query: 97 QDDDKMLFCDLC 108
+K L L
Sbjct: 70 LALEKELQISLK 81
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 31.3 bits (71), Expect = 0.021
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 43 CDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
C + + MI+C +C ++H +C + +P + C C+
Sbjct: 24 CMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE----VFVCQKCR 65
Score = 30.2 bits (68), Expect = 0.054
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYCIGLDK 121
C K M+ C+ C H C + K
Sbjct: 24 CMKPFAGRPMIECNECHTWIHLSCAKIRK 52
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 33.1 bits (74), Expect = 0.025
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 88 KSCVACEKAQDDDK-MLFCDLCDRGYHNYCIGLDK 121
C + D ++ M+ CD+C +H C+G+++
Sbjct: 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEE 71
Score = 31.9 bits (71), Expect = 0.055
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 26 AGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCS 85
GR S P P C MI+C C + H +C+ + + LY C
Sbjct: 26 PGRASAPPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYH--CP 83
Query: 86 DCKSCVACEKAQDDDKMLFCDLCD 109
+C + D +
Sbjct: 84 NCAVLHGSSLMKKRRNWHRHDYTE 107
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 33.0 bits (74), Expect = 0.027
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 85 SDCKSCVACEKAQDDDK-MLFCDLCDRGYHNYCIGLDK 121
+ C D + M+ CD+C +H C+G+++
Sbjct: 2 ASVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEE 39
Score = 31.1 bits (69), Expect = 0.11
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 52 MIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRG 111
MI+C C + H +C+ + E + LY + + K + +
Sbjct: 20 MIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRRGSSKGHDTHKGKP 79
Query: 112 YHNYC 116
Sbjct: 80 VKTGS 84
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 30.6 bits (69), Expect = 0.038
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTV 125
C K D ++ML CD C +H CIG++ +
Sbjct: 19 CKCGTKDDDGERMLACDGCGVWHHTRCIGINNADAL 54
Score = 27.5 bits (61), Expect = 0.47
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 40 CKACDRDTSAGEMIQCGKCVRYLHPACLDLP-GEMLPHMKLYDWQCSDCK 88
CK +D M+ C C + H C+ + + LP + C C
Sbjct: 19 CKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPS----KFLCFRCI 64
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 30.5 bits (68), Expect = 0.084
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 17/86 (19%)
Query: 46 DTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDD----- 100
+ ++ C C + ++ D + H L C +C + D
Sbjct: 2 PLGSMGIVSCTACGQQVNHFQKD---SIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDE 58
Query: 101 ---------KMLFCDLCDRGYHNYCI 117
++ CD C + CI
Sbjct: 59 QCRWCAEGGNLICCDFCHNAFCKKCI 84
Score = 27.1 bits (59), Expect = 1.8
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 24 FHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLY--- 80
+ + S+ ++C+ C G +I C C C+ +
Sbjct: 44 YMSDDISRDSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDEN 100
Query: 81 -DWQCSDCKS 89
W C C
Sbjct: 101 NQWYCYICHP 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation,
RRM domain, transcr; NMR {Homo sapiens}
Length = 140
Score = 30.5 bits (69), Expect = 0.098
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 52 MIQCGKCVRYLHPACLDLPGEMLPHM 77
M+QCGKC R++H C +L EM +
Sbjct: 2 MMQCGKCDRWVHSKCENLSDEMYEIL 27
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 30.6 bits (68), Expect = 0.10
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 17/90 (18%)
Query: 44 DRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDD--- 100
R ++ C C + ++ D + H L C +C + D
Sbjct: 6 KRGDGLHGIVSCTACGQQVNHFQKD---SIYRHPSLQVLICKNCFKYYMSDDISRDSDGM 62
Query: 101 -----------KMLFCDLCDRGYHNYCIGL 119
++ CD C + CI
Sbjct: 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILR 92
Score = 27.5 bits (60), Expect = 1.1
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 24 FHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLY--- 80
+ + S+ ++C+ C G +I C C C+ +
Sbjct: 50 YMSDDISRDSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDEN 106
Query: 81 -DWQCSDCKS 89
W C C
Sbjct: 107 NQWYCYICHP 116
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 29.9 bits (66), Expect = 0.12
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 82 WQCSDCKSCVACEKAQDDDKMLFCDL-CDRGYHNYCIGLDK 121
+ C C+S V DD + C+ C + +H C G+ +
Sbjct: 4 YPCGACRSEV-----NDDQDAILCEASCQKWFHRECTGMTE 39
Score = 28.3 bits (62), Expect = 0.44
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 39 KCKACDRDTSAGE-MIQC-GKCVRYLHPACLDL---PGEMLPHMKLYDWQCSDCKSCVAC 93
C AC + + + I C C ++ H C + +L W C C
Sbjct: 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64
Query: 94 EKAQDDDKMLFC 105
+ + ++
Sbjct: 65 SGSGSGSQFVYV 76
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 29.1 bits (65), Expect = 0.13
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 46 DTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
MI+C C + H +C+ + E P + + C +C+
Sbjct: 19 YDVTRFMIECDACKDWFHGSCVGVEEEEAPDID--IYHCPNCE 59
Score = 28.7 bits (64), Expect = 0.17
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 85 SDCKSCVACEKAQDDDK-MLFCDLCDRGYHNYCIGLDK 121
+ C D + M+ CD C +H C+G+++
Sbjct: 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEE 44
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 28.4 bits (63), Expect = 0.26
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 46 DTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
MI+CG C + H +C+ + E + + C DC++
Sbjct: 21 YNVNHFMIECGLCQDWFHGSCVGIEEENAVDID--IYHCPDCEA 62
Score = 27.6 bits (61), Expect = 0.53
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 82 WQCSDCKSCVACEKAQDDDK-MLFCDLCDRGYHNYCIGLDK 121
+ C + + + M+ C LC +H C+G+++
Sbjct: 6 SGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEE 46
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 28.1 bits (62), Expect = 0.32
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 82 WQCSDCKSCVACEKAQDDDKMLFCDL-CDRGYHNYCIGLDKIP 123
+ C C + V DD + C+ C + +H C G+ +
Sbjct: 9 YPCGICTNEV-----NDDQDAILCEASCQKWFHRICTGMTETA 46
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 29.2 bits (65), Expect = 0.35
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
P D C C GE++ C KC + H +C L + +W C+ C+ E
Sbjct: 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPT---LTNFPSGEWICTFCRDLSKPE 55
Query: 95 KAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKK 138
D D ++ + L I L +
Sbjct: 56 VEYDCDAP--SHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHE 97
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 28.7 bits (63), Expect = 0.61
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACE 94
P D C C G+++ C KC + H C P C D
Sbjct: 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEY 61
Query: 95 KAQDDDKM 102
+
Sbjct: 62 DCDNLQHS 69
Score = 27.2 bits (59), Expect = 1.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYC 116
C Q+ +L C+ C + +H C
Sbjct: 10 CAVCQNGGDLLCCEKCPKVFHLTC 33
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 27.3 bits (60), Expect = 0.61
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 43 CDRDTSAGEMIQC--GKCVRYLHPACLDLPGEMLPHMKLYD-WQCSDCK 88
C MIQC +C + H C+ +P + ++ + C C+
Sbjct: 15 CSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 27.1 bits (60), Expect = 0.77
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 98 DDDKMLFCDLCD---RGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKKKKK 145
+M+ CD D +H C+GL + P K++ + K
Sbjct: 15 SYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGSRHKS 65
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 0.77
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 16/48 (33%)
Query: 17 QVGITLGFHAGRPSKKPVPESDKCKACDRDTS------AGEMIQCGKC 58
+ + G P K PV AC TS E I GK
Sbjct: 1088 VNMLLISSS-G-PIKTPV------GACA--TSVESVDIGVETILSGKA 1125
>1wew_A DNA-binding family protein; structural genomics, PHD domain,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 27.0 bits (59), Expect = 0.85
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 43 CDRDTSAGEMIQC--GKCVRYLHPACLDLPGEMLPHMKLY--DWQCSDCK 88
C MIQC +C + H C+ LP + + + C C+
Sbjct: 21 CGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR 70
Score = 24.7 bits (53), Expect = 5.5
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 93 CEKAQDDDKMLFCD--LCDRGYHNYCIGLDKIPT 124
C + + D M+ C+ C H C+ L P
Sbjct: 21 CGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPM 54
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 27.8 bits (61), Expect = 1.5
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 54 QCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYH 113
CGK + H + + K + + CK+ + CE + + G
Sbjct: 109 HCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCG 168
Query: 114 NYCIGLDKIPTVGLVFTLKKKKNKKKKKKKKK 145
N I GL KK++ +
Sbjct: 169 NTQP---TIRKDGLKLVGSWKKDRATGDADEP 197
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 27.7 bits (60), Expect = 1.6
Identities = 11/87 (12%), Positives = 18/87 (20%), Gaps = 3/87 (3%)
Query: 34 VPESDKCKACDRDTSAGEMIQC--GKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCV 91
P C + + S + + L LP + W
Sbjct: 464 HPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQ 523
Query: 92 ACEKAQDDDKMLFCDLCDRGYHNYCIG 118
+ C G H C+
Sbjct: 524 QTWAIDNVYIGDGCLDMCSG-HGRCVQ 549
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 25.7 bits (56), Expect = 1.8
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 89 SCVACEKAQDDDK-MLFCD-LCDRGYHNYCIGLDKIP 123
+ C++ D + CD CD +H C+G+
Sbjct: 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEM 40
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.1 bits (59), Expect = 2.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 120 DKIPTVGLVFTLKKKKNKKKKKKKKK 145
+K+ T L T + K KK KK+K
Sbjct: 808 EKVATAVLSTTARAKARAKKTKKEKG 833
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 26.9 bits (59), Expect = 3.2
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 44 DRDTSAGEMI----QCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKA--- 96
DR+ + + I Q G +R LD+ E + +L + E
Sbjct: 98 DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMF-----REDEGYI 152
Query: 97 QDDDKMLFCDLCDR 110
+++++ L + R
Sbjct: 153 KEEERPLPENEFQR 166
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 25.6 bits (56), Expect = 3.2
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 17/80 (21%)
Query: 29 PSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCK 88
K P + C C + E + + + H +C +CS C
Sbjct: 7 GMKFQAPARETCVECQKTVYPMERLLANQ--QVFHISCF---------------RCSYCN 49
Query: 89 SCVACEKAQDDDKMLFCDLC 108
+ ++ ++C
Sbjct: 50 NKLSLGTYASLHGRIYCKPH 69
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 26.4 bits (58), Expect = 4.9
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 53 IQCGKCVRY 61
I C +CVRY
Sbjct: 182 IHCKRCVRY 190
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 25.1 bits (54), Expect = 5.6
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 31 KKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPG-----EMLPHMKLYD---- 81
++PV + C C+ T A + C C R H CL G ++
Sbjct: 9 REPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETG 67
Query: 82 WQCSDCKS 89
W C C +
Sbjct: 68 WSCHYCDN 75
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 26.1 bits (56), Expect = 6.0
Identities = 6/69 (8%), Positives = 18/69 (26%), Gaps = 4/69 (5%)
Query: 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQD 98
C+ C + + + + ++ EM+ K + +S +
Sbjct: 275 SCEHCQKGLKDDLFLAAKEDPK----PSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVK 330
Query: 99 DDKMLFCDL 107
+
Sbjct: 331 LCRECLEKQ 339
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 24.7 bits (54), Expect = 6.3
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 17/76 (22%)
Query: 33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVA 92
+KC AC R E +QC R H C C C+ +
Sbjct: 3 NWGGGNKCGACGRTVYHAEEVQCDG--RSFHRCCF---------------LCMVCRKNLD 45
Query: 93 CEKAQDDDKMLFCDLC 108
D ++C C
Sbjct: 46 STTVAIHDAEVYCKSC 61
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc
finger, acetylation, cytoplasm, GTP-binding, HOST-virus
interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB:
3gj4_B*
Length = 92
Score = 24.9 bits (53), Expect = 6.7
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 35 PESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDC------- 87
E +C +C + V P+ L + W C C
Sbjct: 20 AEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKK-PEGSWDCEVCLVQNKAD 78
Query: 88 -KSCVACEKA 96
C+ACE A
Sbjct: 79 STKCIACESA 88
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 25.7 bits (57), Expect = 7.4
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 105 CDLCDRGYHNYC 116
C+ C+ G NYC
Sbjct: 116 CEECEDGLENYC 127
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha
sandwich; 2.50A {Anabaena SP}
Length = 253
Score = 25.2 bits (54), Expect = 9.0
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 76 HMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVG 126
+L +W C+ + +++ +F +C G V
Sbjct: 153 PRELPEWGNIFSDFCIFVRPSSPEEEAMFLGRVREFLQVHCQGAIAASPVS 203
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 25.6 bits (56), Expect = 9.1
Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 42/93 (45%)
Query: 34 VPE--SDKCKACDRDTSAGEMIQCGKCV----------RYLHPACL----------DLPG 71
VP+ + C IQC +C L + G
Sbjct: 680 VPQWVPENC------------IQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKG 727
Query: 72 EMLPHMK----LYDWQCSDCKSCV-AC---EKA 96
+ L K + C C +C C EKA
Sbjct: 728 KELKGYKFRIQINTLDCMGCGNCADICPPKEKA 760
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 25.2 bits (56), Expect = 9.1
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 105 CDLCDRGYHNYC 116
C+ C NYC
Sbjct: 110 CESCANDLENYC 121
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 25.2 bits (56), Expect = 9.4
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 105 CDLCDRGYHNYC 116
C C+R YC
Sbjct: 103 CSPCERDLEQYC 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 9.6
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 24/82 (29%)
Query: 88 KSCVACEKAQDDD---KMLF---------CD-----------LCDRGYHNYCIGLDKIPT 124
K+ VA + KM F C+ L + N+ D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 125 VGLVF-TLKKKKNKKKKKKKKK 145
+ L +++ + + K K +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYE 244
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.448
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,191,179
Number of extensions: 119806
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 217
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)