RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17723
(145 letters)
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 38.1 bits (88), Expect = 3e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 38 DKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQ 97
D C G+++ C +C H C + +P +W CS C ++
Sbjct: 5 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG---EEWSCSLCHVLPDLKEED 61
Query: 98 DDDK 101
D +
Sbjct: 62 VDLQ 65
Score = 32.7 bits (74), Expect = 0.002
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 89 SCVACEKAQDDDKMLFCDLCDRGYHNYCIG--LDKIP 123
S C Q ++ C+ C+ +H C L +P
Sbjct: 6 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVP 42
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 37.0 bits (85), Expect = 6e-05
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 81 DWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
+ + C+ C + ++ M+ CD C+ +H C+G+ +
Sbjct: 10 EVYDPNALYCI-CRQPHNNRFMICCDRCEEWFHGDCVGISEAR 51
Score = 32.7 bits (74), Expect = 0.003
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 43 CDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKL--YDWQCSDCK 88
C + + MI C +C + H C+ + ++ D+ C +C
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 36.1 bits (83), Expect = 8e-05
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
+CK C + ++I C +C + H CL +P +WQC C+
Sbjct: 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD---GEWQCPACQPA 50
Score = 33.0 bits (75), Expect = 0.001
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYC--IGLDKIPT 124
C C K +DDK++ CD C++ +H +C L ++P
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD 39
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 35.0 bits (80), Expect = 3e-04
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 36 ESDKCKACDR-DTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
S +C AC + I C C + H C+ + H+K ++C C +
Sbjct: 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK--QYKCPSCSN 57
Score = 33.5 bits (76), Expect = 0.001
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 84 CSDCKSCVACEKAQDDDK-MLFCDLCDRGYHNYCIGLDK 121
C AC ++ D+ + CDLC+ +H C+ +
Sbjct: 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP 41
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 35.0 bits (80), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
C K D ++ML CD C +H CIG++
Sbjct: 19 CKCGTKDDDGERMLACDGCGVWHHTRCIGINNAD 52
Score = 31.9 bits (72), Expect = 0.005
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 39 KCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKS 89
CK +D M+ C C + H C+ + + C C
Sbjct: 18 DCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALP---SKFLCFRCIE 65
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 32.6 bits (74), Expect = 0.002
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 93 CEKAQDDDKMLFCDLCDRGYHNYCIGLDKIPTVGLVFTLKKKKNKKKKKK 142
C +D ++L CD C YH +C+ + + K K
Sbjct: 12 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
Score = 32.6 bits (74), Expect = 0.002
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 33 PVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVA 92
P+ + C GE++ C C H CL+ P +P+ +W C C
Sbjct: 2 PLGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPN---GEWLCPRCTCPAL 58
Query: 93 CEK 95
K
Sbjct: 59 KGK 61
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 31.2 bits (70), Expect = 0.011
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 90 CVACEKAQDDDKMLFCDLCDRGYHNYCIGLDKIP 123
C+ + + M+ C LC +H C+G+++
Sbjct: 15 CLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEEN 48
Score = 28.1 bits (62), Expect = 0.14
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 50 GEMIQCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSC 90
MI+CG C + H +C+ + E + + C DC++
Sbjct: 25 HFMIECGLCQDWFHGSCVGIEEENAVDID--IYHCPDCEAV 63
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 31.0 bits (69), Expect = 0.013
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 36 ESDKCKACDRDTSA--GEMIQCGKCVRYLHPACLDLPG-EMLPHMKLYDWQCSDCK 88
C C + T A ++++C +C H C + + W C+ C
Sbjct: 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70
Score = 30.6 bits (68), Expect = 0.022
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 10/67 (14%)
Query: 89 SCVACEKAQDDDK--MLFCDLCDRGYHNYCIGLDKIPTVGLVFT--------LKKKKNKK 138
+CV C + ++ C C YH C ++ K
Sbjct: 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77
Query: 139 KKKKKKK 145
+K +K
Sbjct: 78 QKNQKSG 84
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 26.8 bits (59), Expect = 0.49
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 24 FHAGRPSKKPVPESDKCKACDRDTSAGEMIQCGKCVRYLHPACLDLPGEMLPH 76
H + + C C+ + + C +C LH C
Sbjct: 34 LHEEHELELTRVQVYTCDKCEEEGT-IWSYHCDECDFDLHAKCALNEDTKESG 85
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 26.2 bits (57), Expect = 0.66
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 93 CEKAQDDDKMLFCD--LCDRGYHNYCIGLDKIP 123
C + + D M+ C+ C H C+ L P
Sbjct: 21 CGNSLETDSMIQCEDPRCHVWQHVGCVILPDKP 53
Score = 25.9 bits (56), Expect = 0.75
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 35 PESDKCKACDRDTSAGEMIQC--GKCVRYLHPACLDLPGEMLPHMKL--YDWQCSDCK 88
PE C MIQC +C + H C+ LP + + + C C+
Sbjct: 13 PEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR 70
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 24.7 bits (53), Expect = 4.4
Identities = 8/67 (11%), Positives = 22/67 (32%)
Query: 54 QCGKCVRYLHPACLDLPGEMLPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDRGYH 113
V ++ + + + Y + ++ + + D+ + + + G
Sbjct: 50 SKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRR 109
Query: 114 NYCIGLD 120
C GLD
Sbjct: 110 VICAGLD 116
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 24.0 bits (51), Expect = 5.4
Identities = 10/47 (21%), Positives = 12/47 (25%), Gaps = 3/47 (6%)
Query: 53 IQCGKCVRYLHPACLDL---PGEMLPHMKLYDWQCSDCKSCVACEKA 96
I G C+ PG K C C+AC
Sbjct: 46 IADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNV 92
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 23.2 bits (50), Expect = 7.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 129 FTLKKKKNKKKKKKKK 144
L KKK+ + KK+K+
Sbjct: 75 VKLAKKKSPEVKKEKE 90
>d1g0za_ a.133.1.2 (A:) Snake phospholipase A2 {Indian krait
(Bungarus caeruleus), different isoforms [TaxId:
132961]}
Length = 118
Score = 23.3 bits (50), Expect = 8.5
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 60 RYLHPACLDLPGEM---LPHMKLYDWQCSDCKSCVACEKAQDDDKMLFCDLCDR 110
Y H C + + P +K Y + C+ + C D CD CDR
Sbjct: 43 CYTHDHCYNKAANIPGCNPLIKTYSYTCTKPN--ITCNDTSDSCARFICD-CDR 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.448
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,646
Number of extensions: 27808
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 82
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)