BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17724
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In
100 Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In
100 Mm Sodium Bicarbonate
Length = 229
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 52 ELPHHHVGVYAWVSCSNGEVPANAV 76
EL H Y W+ CSN VPA +
Sbjct: 28 ELADHQTPHYLWIGCSNSRVPAEKL 52
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 11 VEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSR 47
+EG F P + V + AR+V T + G P+ W R
Sbjct: 269 LEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLR 305
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 52 ELPHHHVGVYAWVSCSNGEVPANAV 76
EL H Y W++CS+ VPA +
Sbjct: 28 ELADHQTPHYLWIACSDSRVPAEKL 52
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
With 1m Bicarbonate
Length = 229
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 52 ELPHHHVGVYAWVSCSNGEVPANAV 76
EL H Y W+ CS+ VPA +
Sbjct: 28 ELADHQTPHYLWIGCSDSRVPAEKL 52
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 52 ELPHHHVGVYAWVSCSNGEVPANAV 76
EL H Y W+ CS+ VPA +
Sbjct: 28 ELADHQTPHYLWIGCSDSRVPAEKL 52
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 52 ELPHHHVGVYAWVSCSNGEVPANAV 76
EL H Y W+ CS+ VPA +
Sbjct: 28 ELADHQTPHYLWIGCSDSRVPAEKL 52
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
Length = 496
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 42 PHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGR 91
P +++R + + P Y W+ C++ VPAN + D G +V R
Sbjct: 55 PEFFNRLANGQSPE-----YLWIGCADSRVPANQL---LDLPAGEVFVHR 96
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 100 PAKVAPSHGGAFVPWGGLEHSK 121
P + GGAF PWGG+ +K
Sbjct: 254 PYSLVEFQGGAFDPWGGVGFAK 275
>pdb|3KOW|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 763
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 25 RLKARVVMVTKMVSMGGPHWWSRERHHELP-HHHVGVYAWVSCSNGEV-PANAVKVGRDE 82
LKA ++ + ++S H+ + +R HEL + + C +V P AVK G D
Sbjct: 655 ELKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDA 714
Query: 83 DGGR 86
GR
Sbjct: 715 GFGR 718
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 52 ELPHHHVGVYAWVSCSNGEVPANAV 76
EL H Y W+ CS+ PA +
Sbjct: 28 ELADHQTPHYLWIGCSDSRAPAEKL 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,544,179
Number of Sequences: 62578
Number of extensions: 194388
Number of successful extensions: 393
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 17
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)