BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17724
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66S17|NATT3_THANI Natterin-3 OS=Thalassophryne nattereri PE=1 SV=1
Length = 364
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 63 WVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKF 122
W S+G VP NAV+V + YVG+ ++ KV H F+PW G EH
Sbjct: 126 WKGGSDGSVPKNAVEVCE-----KVYVGKNKYG----LGKVHTKHEALFLPWHGEEHWYK 176
Query: 123 NYEIIS 128
+YE+++
Sbjct: 177 DYEVLT 182
>sp|Q66S13|NATT4_THANI Natterin-4 OS=Thalassophryne nattereri PE=2 SV=1
Length = 387
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 48 ERHHELPHHHVG-----VYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAK 102
E+H ++ H V + W + GEVP NAVK RD YV + ++ K
Sbjct: 129 EQHSKMFHILVNRDNFEILEWKWKTGGEVPENAVKACRD-----LYVAKNKYG----LGK 179
Query: 103 VAPSHGGAFVPWGGLEHSKFNYEIIS 128
+ SH ++PW G E+ Y +++
Sbjct: 180 LHQSHHVFYLPWKGTEYKYNEYYVLN 205
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 68 NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLE-HSKF---- 122
NG +P+NAVK+ G YV R E K PS F P+G E HSK
Sbjct: 82 NGHIPSNAVKISNTYVGREDYVCRVGCEAGYYTPKKGPS---CFYPYGFTEQHSKMFHIL 138
Query: 123 ----NYEII 127
N+EI+
Sbjct: 139 VNRDNFEIL 147
>sp|Q63035|NALP6_RAT NACHT, LRR and PYD domains-containing protein 6 OS=Rattus
norvegicus GN=Nlrp6 PE=1 SV=3
Length = 880
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 62 AWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHS 120
A SCS+ E A + + +D + + R RH+ + AP G + +PWG LEHS
Sbjct: 4 AGASCSSSEAVARELLLAALQDLSQEQLKRFRHK-----LRDAPLDGRS-IPWGRLEHS 56
>sp|Q8TXW8|AGOG_METKA N-glycosylase/DNA lyase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=MK0541 PE=3 SV=1
Length = 242
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 11 VEGRFRPIIAAVTGRLKARVVMVTKMVSMGGP--HWWSRERHHELPHHHVGVYAWVSCSN 68
+ GRFRP + + AR+ +T+ ++ P +W S R +P H+ WV S
Sbjct: 159 ITGRFRPYPFEIPIPVDARIERITRRITNDDPQLYWDSIARRTGIPPLHLDSILWVGTSR 218
Query: 69 G 69
Sbjct: 219 D 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,328,912
Number of Sequences: 539616
Number of extensions: 2298903
Number of successful extensions: 4612
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4607
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)