Query psy17724
Match_columns 128
No_of_seqs 113 out of 433
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:22:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00696 DM9 Repeats found i 100.0 2.9E-29 6.2E-34 170.1 10.1 69 60-128 1-69 (71)
2 PF11901 DUF3421: Protein of u 99.9 3.2E-26 7E-31 167.3 12.3 91 31-122 22-119 (119)
3 PF11901 DUF3421: Protein of u 99.8 6.8E-19 1.5E-23 128.7 6.9 52 77-128 1-52 (119)
4 smart00696 DM9 Repeats found i 57.1 10 0.00022 25.4 2.2 26 31-57 39-64 (71)
5 KOG2178|consensus 55.8 14 0.00031 32.8 3.5 48 14-67 327-374 (409)
6 PRK15213 fimbrial outer membra 49.1 87 0.0019 29.5 7.7 88 33-128 703-796 (797)
7 KOG3550|consensus 35.5 21 0.00046 28.5 1.3 37 75-118 106-147 (207)
8 PF12150 MFP2b: Cytosolic moti 32.5 1.4E+02 0.0031 26.3 6.0 107 21-128 149-271 (362)
9 PF11191 DUF2782: Protein of u 25.7 87 0.0019 22.0 3.0 22 25-47 55-76 (105)
10 PF12150 MFP2b: Cytosolic moti 25.4 2.2E+02 0.0048 25.1 5.9 59 60-121 6-67 (362)
11 PF09861 DUF2088: Domain of un 23.7 19 0.00041 28.6 -0.8 49 59-108 118-168 (204)
12 cd07970 OBF_DNA_ligase_LigC Th 23.0 1.1E+02 0.0025 22.1 3.2 20 73-92 17-37 (122)
13 PF13716 CRAL_TRIO_2: Divergen 21.3 90 0.0019 22.2 2.4 18 76-93 5-22 (149)
No 1
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=99.96 E-value=2.9e-29 Score=170.10 Aligned_cols=69 Identities=52% Similarity=0.920 Sum_probs=67.4
Q ss_pred ceeEEeCCCCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCCEEEEeeCCEEeeeceEeEeC
Q psy17724 60 VYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS 128 (128)
Q Consensus 60 ~~~WV~~~~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~~c~IpygG~E~~~~~YEVLc 128 (128)
.+.||++++|.+|+|||.+|+|+||++|||||+.|+|+++|||++|++++|||||+|+|+..++|||||
T Consensus 1 ~~~Wv~~~~g~vP~~AV~~G~~~~G~~lYvgR~~~~g~~~pGKv~p~~~~~yi~~~g~E~~~~~YEVLv 69 (71)
T smart00696 1 GYVWVPSSDGNIPPNAVVGGTDSDGEPLYVGRAYYEGSLLPGKVVPSHGCAYIPYGGQEVRLDSYEVLV 69 (71)
T ss_pred CCEEEECCCCCCCCCcEEcccCCCCCEEEEEEEEECCcEEEEEEEccCCEEEEEECCEEEEcCeEEEEe
Confidence 368999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=99.94 E-value=3.2e-26 Score=167.31 Aligned_cols=91 Identities=38% Similarity=0.660 Sum_probs=81.8
Q ss_pred EEEEEEeecCCCeeEEccCCcceeecC-------CCceeEEeCCCCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEE
Q psy17724 31 VMVTKMVSMGGPHWWSRERHHELPHHH-------VGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKV 103 (128)
Q Consensus 31 ~~~~k~v~~~g~~~~~~~~~~~l~~~~-------~~~~~WV~~~~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV 103 (128)
++-+|++|+++ .|+++|++.+.+.++ ...++||++++|.+|+|||++|++.||++|||||+.|+|+++|||+
T Consensus 22 ~~Pgkv~p~~~-~c~i~~gG~e~~~~~yEVL~~~~~~~~Wv~~~~g~iP~~av~~G~~~~Ge~lyIgR~~~~g~~~~GKv 100 (119)
T PF11901_consen 22 LLPGKVVPSKG-ACYIPYGGKEHSKTNYEVLCGDDNFYEWVPSSDGNIPPNAVVGGRTEDGEPLYIGRAHYNGSLIPGKV 100 (119)
T ss_pred cEeeEEecCCC-EEEEECCcceEEeceEEeecCCCCccEEEECCCCCcCCCcEEcccccCCCEEEEEEEEECCeeEEEEE
Confidence 47799999987 555789999888762 2237999999999999999999999999999999999999999999
Q ss_pred ecCCCEEEEeeCCEEeeec
Q psy17724 104 APSHGGAFVPWGGLEHSKF 122 (128)
Q Consensus 104 ~p~~~~c~IpygG~E~~~~ 122 (128)
++++++|||||+|+|++++
T Consensus 101 ~~s~~~~~ip~gG~E~~~k 119 (119)
T PF11901_consen 101 HPSHKCCYIPYGGKEISFK 119 (119)
T ss_pred EcCCCEEEEEECCEEEEcC
Confidence 9999999999999999863
No 3
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=99.77 E-value=6.8e-19 Score=128.67 Aligned_cols=52 Identities=60% Similarity=1.112 Sum_probs=50.8
Q ss_pred EEEecCCCCeEEEEEEEeCCcEEeEEEecCCCEEEEeeCCEEeeeceEeEeC
Q psy17724 77 KVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS 128 (128)
Q Consensus 77 ~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~~c~IpygG~E~~~~~YEVLc 128 (128)
++|+|.||++||||||+|+|+++|||+.|+++.||+||+|+|+..++|||||
T Consensus 1 ~~G~d~~g~~iYV~Ra~~~g~~~Pgkv~p~~~~c~i~~gG~e~~~~~yEVL~ 52 (119)
T PF11901_consen 1 QGGHDSDGEPIYVGRAKHEGDLLPGKVVPSKGACYIPYGGKEHSKTNYEVLC 52 (119)
T ss_pred CCccCCCCCEEEEEEEEECCccEeeEEecCCCEEEEECCcceEEeceEEeec
Confidence 4799999999999999999999999999999999999999999999999998
No 4
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=57.09 E-value=10 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.0
Q ss_pred EEEEEEeecCCCeeEEccCCcceeecC
Q psy17724 31 VMVTKMVSMGGPHWWSRERHHELPHHH 57 (128)
Q Consensus 31 ~~~~k~v~~~g~~~~~~~~~~~l~~~~ 57 (128)
+...|++||++-+| +++++.++..++
T Consensus 39 ~~pGKv~p~~~~~y-i~~~g~E~~~~~ 64 (71)
T smart00696 39 LLPGKVVPSHGCAY-IPYGGQEVRLDS 64 (71)
T ss_pred EEEEEEEccCCEEE-EEECCEEEEcCe
Confidence 56899999999666 669998887653
No 5
>KOG2178|consensus
Probab=55.84 E-value=14 Score=32.82 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=35.6
Q ss_pred cceeeeeeeeceeeeEEEEEEEEeecCCCeeEEccCCcceeecCCCceeEEeCC
Q psy17724 14 RFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCS 67 (128)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~k~v~~~g~~~~~~~~~~~l~~~~~~~~~WV~~~ 67 (128)
-|||||-.-+-+||-.|-+ -|++.+| +++||+.-..-+.+.+-=|-++
T Consensus 327 SFRPIIlPds~~L~I~i~~-----dsR~~aw-vSfDG~~r~El~~GD~i~I~tS 374 (409)
T KOG2178|consen 327 SFRPIILPDSSELRVEVPL-----DSRSTAW-VSFDGRPRQELSLGDYIDITTS 374 (409)
T ss_pred cccceEccCccEEEEEeCc-----cccccce-EEecCcchhhccCCceEEEEec
Confidence 4999999988888876654 3678999 5599988777666655555554
No 6
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=49.15 E-value=87 Score=29.52 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=46.3
Q ss_pred EEEEeecCCCeeEEccCCcceeecCCCceeEEeCC-CCccCCCceEEEecCCCCeEEE----EEEEeCCcEEeEEEecCC
Q psy17724 33 VTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCS-NGEVPANAVKVGRDEDGGRTYV----GRARHEGDLLPAKVAPSH 107 (128)
Q Consensus 33 ~~k~v~~~g~~~~~~~~~~~l~~~~~~~~~WV~~~-~G~IP~nAV~gG~d~dGe~LYV----GRa~h~G~l~PGKV~p~~ 107 (128)
+.+++|++|-.-++.++=. +...--+. +... +..+|.+|.+ .+.+|+.+.+ |+++..|.-..+++.-
T Consensus 703 ~~~vvPt~gAvv~~~F~~~---~g~~~ll~-l~~~~G~~lP~Ga~v--~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v-- 774 (797)
T PRK15213 703 SQNVVPTDKAVVYREFKAL---KVLRYILR-VKQKDGRFVPGGSWA--RNEQGTPLGFVANNGVLLMNLLDAPGDISV-- 774 (797)
T ss_pred EEEEEecCCcEEEEEEEEE---eeeEEEEE-EEccCCCcCCCCeEE--ECCCCcEEEEEcCCCEEEEEcCCCCCEEEE--
Confidence 4567788877666543221 11122233 3333 4457889876 3555654433 4455444333444433
Q ss_pred CEEEEeeCCEEeeec-eEeEeC
Q psy17724 108 GGAFVPWGGLEHSKF-NYEIIS 128 (128)
Q Consensus 108 ~~c~IpygG~E~~~~-~YEVLc 128 (128)
..|.++|.+..-... -=||-|
T Consensus 775 ~~C~~~~~~~~~~~~~~~~~~~ 796 (797)
T PRK15213 775 GQCRFPAAKLVQNTGKVQEITC 796 (797)
T ss_pred EEEEEECccccCCccceeEEec
Confidence 379999998763333 236655
No 7
>KOG3550|consensus
Probab=35.51 E-value=21 Score=28.50 Aligned_cols=37 Identities=30% Similarity=0.585 Sum_probs=25.1
Q ss_pred ceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCCE-----EEEeeCCEE
Q psy17724 75 AVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGG-----AFVPWGGLE 118 (128)
Q Consensus 75 AV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~~-----c~IpygG~E 118 (128)
-|.||.| ..+|+||.|.. ||-|...|+. -.++.+|..
T Consensus 106 nvmggke-qnspiyisrii------pggvadrhgglkrgdqllsvngvs 147 (207)
T KOG3550|consen 106 NVMGGKE-QNSPIYISRII------PGGVADRHGGLKRGDQLLSVNGVS 147 (207)
T ss_pred eeccCcc-cCCceEEEeec------CCccccccCcccccceeEeeccee
Confidence 3678888 57899999965 7777665543 245666643
No 8
>PF12150 MFP2b: Cytosolic motility protein; InterPro: IPR021010 This entry represents proteins found in nematodes. They complex with MSP (major sperm protein) to allow motility []. Their action is quite similar to the action of bacterial actin molecules.; PDB: 2BJQ_A 2BJR_A.
Probab=32.46 E-value=1.4e+02 Score=26.27 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=61.7
Q ss_pred eeeceeeeEEEEEEEEeecCCCeeEEccCCcceeec---CCCceeEEeCC-CCccCC--CceEEEec----CCCC-e-EE
Q psy17724 21 AVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHH---HVGVYAWVSCS-NGEVPA--NAVKVGRD----EDGG-R-TY 88 (128)
Q Consensus 21 ~~~~~~~~~~~~~~k~v~~~g~~~~~~~~~~~l~~~---~~~~~~WV~~~-~G~IP~--nAV~gG~d----~dGe-~-LY 88 (128)
.++|.+-..+..+||..-.+=|+|=- ......|-. .-..-+|.+.. .+..|. ++|.+..- ..|+ + .|
T Consensus 149 ~~sg~~l~d~~il~r~~~g~pp~c~c-~~c~k~pp~~~~rv~~deW~D~r~Gd~~P~~K~~v~a~~r~L~t~~g~~~dQy 227 (362)
T PF12150_consen 149 TVSGSELNDMLILVRNLKGGPPHCEC-EKCKKPPPPPPPRVMDDEWEDFRYGDPWPTRKNPVRALDRSLDTLPGENPDQY 227 (362)
T ss_dssp EEECGGGCCSEEEEEE-SS--TT--S-HHHHTS---S---B-S-EEEEEETTSB--CCCEE-BGGGS-EE-TTTSEC--E
T ss_pred EeccccccceeeeeeeccCCCCCcch-hcccCCCCCCcceeeecceeecccCCCCCCcccccccCCcccCCCCCCCcceE
Confidence 35566666777778888777777721 111112211 11245899988 455677 66666322 2443 3 79
Q ss_pred EEEEEeCCcEEeEEEecCCC--EEEEeeCCEEeeec--eEeEeC
Q psy17724 89 VGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHSKF--NYEIIS 128 (128)
Q Consensus 89 VGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~~~--~YEVLc 128 (128)
|+==+..|+-+-|++..+.+ .+.+.|+++|++.+ ..++|+
T Consensus 228 VALWY~~GePVmGRaw~~~Gki~A~F~~~n~E~~~~vGSlQlLv 271 (362)
T PF12150_consen 228 VALWYKHGEPVMGRAWNENGKIAANFGWNNQEYTANVGSLQLLV 271 (362)
T ss_dssp EEEEEETTEEEEEEEEECTTEEEEEEEETTEEE-CCG-EEEEEE
T ss_pred EEEEecCCCcceeeeecCCCcEEEEEeeCCcEeccccCcEEEEE
Confidence 99999999999999998754 58899999999733 556663
No 9
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=25.67 E-value=87 Score=22.04 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=16.0
Q ss_pred eeeeEEEEEEEEeecCCCeeEEc
Q psy17724 25 RLKARVVMVTKMVSMGGPHWWSR 47 (128)
Q Consensus 25 ~~~~~~~~~~k~v~~~g~~~~~~ 47 (128)
|..-++-|| |+.|.-|+.|++-
T Consensus 55 Rv~G~l~~I-kV~P~~G~~Yyl~ 76 (105)
T PF11191_consen 55 RVNGQLYMI-KVQPKAGPPYYLV 76 (105)
T ss_pred EECCeEeeE-EEEeCCCCCEEEE
Confidence 344455554 9999999999884
No 10
>PF12150 MFP2b: Cytosolic motility protein; InterPro: IPR021010 This entry represents proteins found in nematodes. They complex with MSP (major sperm protein) to allow motility []. Their action is quite similar to the action of bacterial actin molecules.; PDB: 2BJQ_A 2BJR_A.
Probab=25.37 E-value=2.2e+02 Score=25.12 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=39.0
Q ss_pred ceeEEeCC-CCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEeee
Q psy17724 60 VYAWVSCS-NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHSK 121 (128)
Q Consensus 60 ~~~WV~~~-~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~~ 121 (128)
.-.|--.. +..+|+|.|.+ .+-+-.||++=.-.|.-+-|+..-..+ .|.+||+..|.+.
T Consensus 6 eD~Wa~q~iG~Pfp~npvk~---~gqqNmYVALWykhGkPihGrAWNn~GvveCSF~~~~~elt~ 67 (362)
T PF12150_consen 6 EDTWAFQPIGAPFPSNPVKV---PGQQNMYVALWYKHGKPIHGRAWNNSGVVECSFPYDKAELTG 67 (362)
T ss_dssp --EEEEEETTS---SSB-B----TT-SS-EEEEEEETTEEEEEEEEEETTEEEEEEEETTEEE-S
T ss_pred cccccccccCCCCCCccccC---CCCCceEEEEEccCCCCcccceecCCceEEEEEEcccceecc
Confidence 34566655 56699999988 455679999999899988899986554 4999999998765
No 11
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=23.71 E-value=19 Score=28.57 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=32.9
Q ss_pred CceeEEeCCCCccCCCceEEEecCCCCeEEEEEEEeC--CcEEeEEEecCCC
Q psy17724 59 GVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHE--GDLLPAKVAPSHG 108 (128)
Q Consensus 59 ~~~~WV~~~~G~IP~nAV~gG~d~dGe~LYVGRa~h~--G~l~PGKV~p~~~ 108 (128)
..++|+... -.-+.+-+.-|.+++|.|+||-|...+ --+..|.|.|+.-
T Consensus 118 ~~~~v~~Hd-~~d~~~lv~lG~t~~G~pV~inr~~~eAD~iI~iG~I~pH~~ 168 (204)
T PF09861_consen 118 ERVRVVNHD-CDDPEDLVYLGTTSRGTPVYINRHVAEADLIILIGRIEPHYF 168 (204)
T ss_dssp HHSEEEE---TT-GGGEEEEEE-TTS-EEEEEHHHHH-SEEEEEEE--EETT
T ss_pred CceEEEecC-CCCcccceEEeECCCCCEEEEchHHHhCCEEEEECCeEccCc
Confidence 456888873 234778899999999999999998754 4478899998863
No 12
>cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of Mycobacterium tuberculosis LigC and similar ba
Probab=22.95 E-value=1.1e+02 Score=22.08 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=14.6
Q ss_pred CCceEEE-ecCCCCeEEEEEE
Q psy17724 73 ANAVKVG-RDEDGGRTYVGRA 92 (128)
Q Consensus 73 ~nAV~gG-~d~dGe~LYVGRa 92 (128)
.+|+.-| +|.+|+-.||||+
T Consensus 17 ~gsLlLg~~~~~g~l~yvG~v 37 (122)
T cd07970 17 PGSLLLGLYDDGGRLRHVGRT 37 (122)
T ss_pred ccEEEEEEECCCCCEEEEEEE
Confidence 3556666 6666778999999
No 13
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=21.33 E-value=90 Score=22.17 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=14.0
Q ss_pred eEEEecCCCCeEEEEEEE
Q psy17724 76 VKVGRDEDGGRTYVGRAR 93 (128)
Q Consensus 76 V~gG~d~dGe~LYVGRa~ 93 (128)
..||+|.+|.|+++--+.
T Consensus 5 ~~gG~d~~g~pV~~~~~~ 22 (149)
T PF13716_consen 5 YPGGRDREGRPVVVFIAS 22 (149)
T ss_dssp EEEEEBTTS-EEEEEEGG
T ss_pred EecccCCCcCEEEEEECC
Confidence 579999999999986544
Done!