Query psy17724
Match_columns 128
No_of_seqs 113 out of 433
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:22:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bjr_A MFP2B; motility, nemato 89.8 0.58 2E-05 39.7 6.0 67 59-128 7-81 (368)
2 2bjq_A MFP2A; motility, nemato 81.2 3.7 0.00013 34.5 6.6 66 60-128 7-80 (345)
3 1yd6_A UVRC; DNA binding prote 62.9 4.5 0.00015 27.7 2.4 14 80-93 22-35 (99)
4 2bjq_A MFP2A; motility, nemato 50.8 38 0.0013 28.4 6.4 68 60-127 180-262 (345)
5 1yd0_A Uvrabc system protein C 50.1 6.8 0.00023 26.7 1.6 13 80-93 22-34 (96)
6 2bjr_A MFP2B; motility, nemato 41.3 46 0.0016 28.1 5.6 69 60-128 192-273 (368)
7 1vk6_A NADH pyrophosphatase; 1 26.0 93 0.0032 24.1 4.8 57 34-92 14-71 (269)
8 2wsh_A Endonuclease II; GIY-YI 22.4 76 0.0026 23.3 3.4 11 83-93 49-59 (143)
9 3nx6_A 10KDA chaperonin; bacte 12.6 70 0.0024 21.8 1.0 43 83-125 37-81 (95)
10 2xk0_A Polycomb protein PCL; t 12.5 2.6E+02 0.0089 18.2 3.7 41 76-118 11-52 (69)
No 1
>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=89.85 E-value=0.58 Score=39.69 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=54.1
Q ss_pred CceeEEeCC-CCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEee-----eceEeEeC
Q psy17724 59 GVYAWVSCS-NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHS-----KFNYEIIS 128 (128)
Q Consensus 59 ~~~~WV~~~-~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~-----~~~YEVLc 128 (128)
..-+|.... ...+|+|+|.+--. .-.||+.=+.+|.-+-|++..+.+ .|.++|++.|++ .-..+||+
T Consensus 7 ~eD~W~d~~iG~PfP~npV~a~g~---~nqYVALWYkhG~PI~GRAWn~~G~V~asF~~~~~E~tg~~d~~GsIQlL~ 81 (368)
T 2bjr_A 7 KEDTWAFGPIGSPFPDNPVKALGQ---QNMYVALWYKNGRPMHGRAWNNGGVIECSFPYNKSELTGVKDLGGQIQVLQ 81 (368)
T ss_dssp CCCEEEEEETTSCCCSSBCBCTTC---SSCEEEEEEETTEEEEEEEEEETTEEEEEEEETTEEECSHHHHCSEEEEEE
T ss_pred ccccceecccCCCCCCccccCCCc---cceEEEEEecCCccceeeeecCCCcEEEEEecCCceeccccccCCeEEEEE
Confidence 345788877 56799999998433 349999999999999999997654 599999999998 34778774
No 2
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=81.18 E-value=3.7 Score=34.51 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=52.1
Q ss_pred ceeEEeCC-CCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEeee-----ceEeEeC
Q psy17724 60 VYAWVSCS-NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHSK-----FNYEIIS 128 (128)
Q Consensus 60 ~~~WV~~~-~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~~-----~~YEVLc 128 (128)
.-.|.... ...+|++++.. .+-...|++..+..|....|++....+ .|.++|++.|++- -..+||+
T Consensus 7 eD~Wad~~~g~pfp~k~vk~---~~~~N~yvALwyKsGk~vlGRaWn~~G~V~csF~~~~~E~~g~~~~~GsiQiL~ 80 (345)
T 2bjq_A 7 EDTWAYNTIGSPFPDNPVRV---KGQQNMYVALWYKFGKPIHGRAWNDNGNVECSFPYNKVELTGARDLGGQIQILT 80 (345)
T ss_dssp CCEEEEEETTSCCCSSBCBC---TTCSSCEEEEEEETTEEEEEEEEEETTEEEEEEEETTEEECCTTTTTSEEEEEE
T ss_pred ccchhhccccCccccccccC---CCccceEEEEEEEcCcEEEeeeecCCCcEEEEeecCCcccccccccCCeEEEEE
Confidence 45788877 45678888875 344479999999999999999997654 5999999999984 3667663
No 3
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=62.91 E-value=4.5 Score=27.73 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=11.9
Q ss_pred ecCCCCeEEEEEEE
Q psy17724 80 RDEDGGRTYVGRAR 93 (128)
Q Consensus 80 ~d~dGe~LYVGRa~ 93 (128)
+|.+|+.||||+|.
T Consensus 22 ~d~~g~vlYVGKAk 35 (99)
T 1yd6_A 22 KDKHGTVIYVGKAK 35 (99)
T ss_dssp ECSSCCEEEEEEES
T ss_pred EcCCCCEEEEecCc
Confidence 46689999999995
No 4
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=50.82 E-value=38 Score=28.43 Aligned_cols=68 Identities=24% Similarity=0.458 Sum_probs=52.4
Q ss_pred ceeEEeCC-CCccCC--CceEEEec----CCCCe--EEEEEEEeCCcEEeEEEecCC---CEEEEeeCCEEeee---ceE
Q psy17724 60 VYAWVSCS-NGEVPA--NAVKVGRD----EDGGR--TYVGRARHEGDLLPAKVAPSH---GGAFVPWGGLEHSK---FNY 124 (128)
Q Consensus 60 ~~~WV~~~-~G~IP~--nAV~gG~d----~dGe~--LYVGRa~h~G~l~PGKV~p~~---~~c~IpygG~E~~~---~~Y 124 (128)
.-+|.+-. .+..|. +.|.++.- .+|+- .||+==++.|+-+-|++.|.. =.|.++|++.|+.- -..
T Consensus 180 ~d~W~D~~~GdpfP~~~~~V~a~~r~l~t~~g~~~~QyVALWY~hG~Pv~GR~w~~~~Gkv~a~F~~~~~e~~g~~vGsl 259 (345)
T 2bjq_A 180 DDTWLDLKYRDPFPAARNPIAAGGRKVKSDDGTEMFQYVALWYEHGQPVFGRAYPDSADKTLANFGWGGQENAGAEIGSF 259 (345)
T ss_dssp SCEEEEEETTCBCCGGGCBCBGGGSCEECTTSSEECCEEEEEEETTEEEEEEEEECTTSBEEEEEEETTEEECSGGGCEE
T ss_pred ecceEEeccCCCCCCcCCcchhcccccccCCCCChhheehhhhhcCCcceeccccCCCCeEEEEeccCCccccccccCcE
Confidence 45899987 667899 88887421 25665 899999999999999999543 46999999999872 245
Q ss_pred eEe
Q psy17724 125 EII 127 (128)
Q Consensus 125 EVL 127 (128)
++|
T Consensus 260 Q~L 262 (345)
T 2bjq_A 260 QML 262 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 5
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=50.14 E-value=6.8 Score=26.70 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.0
Q ss_pred ecCCCCeEEEEEEE
Q psy17724 80 RDEDGGRTYVGRAR 93 (128)
Q Consensus 80 ~d~dGe~LYVGRa~ 93 (128)
+| +|+.||||+|.
T Consensus 22 ~d-~g~vlYVGKAk 34 (96)
T 1yd0_A 22 KN-KGVPIYIGKAK 34 (96)
T ss_dssp EE-TTEEEEEEEES
T ss_pred EC-CCeEEEEecCc
Confidence 45 79999999995
No 6
>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=41.34 E-value=46 Score=28.14 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=51.2
Q ss_pred ceeEEeCC-CCccCC--CceEEEecC----CCC--eEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEeeec--eEeE
Q psy17724 60 VYAWVSCS-NGEVPA--NAVKVGRDE----DGG--RTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHSKF--NYEI 126 (128)
Q Consensus 60 ~~~WV~~~-~G~IP~--nAV~gG~d~----dGe--~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~~~--~YEV 126 (128)
.-+|.+.. .+..|. +.|.+.... +|+ ..||+==+++|+-+-|++..+.+ .|.++|++.|++.. ..++
T Consensus 192 ~d~W~d~~~GdpfP~~~~~v~a~~~~l~t~~g~~~~QYVALWY~~G~PvmGR~w~~~Gkv~a~F~~~~~E~~~~vGSiQl 271 (368)
T 2bjr_A 192 LNEWADFRCGDPWPTVGTPVRALGRSLDTLPGENPDQYVALWYQSGEPVMGRIWNDGGKIAACFGWGGHEYRQKIGSIQI 271 (368)
T ss_dssp SCEEEEEETTSBCCSSSEECBGGGSCCCCCTTCCSCCEEEEEEETTEEEEEEEEEETTEEEEEEEETTEEECSSCCEEEE
T ss_pred ecceeecccCCCCCCcCccccccccccccCCCCCccceeeeeeccCCcceeeeecCCCcEEEeeccCCccchhccceEEE
Confidence 46899987 566888 367653322 332 38999999999999999986543 69999999999733 5666
Q ss_pred eC
Q psy17724 127 IS 128 (128)
Q Consensus 127 Lc 128 (128)
|+
T Consensus 272 L~ 273 (368)
T 2bjr_A 272 LY 273 (368)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 7
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=26.02 E-value=93 Score=24.10 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=37.2
Q ss_pred EEEeecCCCeeEEccCCcceeecCCCceeEEeCCC-CccCCCceEEEecCCCCeEEEEEE
Q psy17724 34 TKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSN-GEVPANAVKVGRDEDGGRTYVGRA 92 (128)
Q Consensus 34 ~k~v~~~g~~~~~~~~~~~l~~~~~~~~~WV~~~~-G~IP~nAV~gG~d~dGe~LYVGRa 92 (128)
-++++.+.+++|+.+++.++-..+. .+.+-.... +..+..++.-|.. ||.+.|.-+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~ 71 (269)
T 1vk6_A 14 DRIIEKLDHGWWVVSHEQKLWLPKG-ELPYGEAANFDLVGQRALQIGEW-QGEPVWLVQQ 71 (269)
T ss_dssp CEECCTTCEEEEEEEETTEEECGGG-SCCEEEGGGGTCTTCEEEEEEES-SSSEEEEEEC
T ss_pred ccccCCCCCeEEEEEECCEEEEeCC-CcCCCChhhcCcccCceEEEecc-CCEEEEEEec
Confidence 3578889999999877777765442 233333321 2223567777887 8999888764
No 8
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=22.38 E-value=76 Score=23.31 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=9.8
Q ss_pred CCCeEEEEEEE
Q psy17724 83 DGGRTYVGRAR 93 (128)
Q Consensus 83 dGe~LYVGRa~ 93 (128)
+|+.||||.|.
T Consensus 49 ~g~ViYVGKAk 59 (143)
T 2wsh_A 49 NDELVYIGKTK 59 (143)
T ss_dssp TTEEEEEEEES
T ss_pred CCeEEEEEecc
Confidence 89999999985
No 9
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=12.64 E-value=70 Score=21.77 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=29.4
Q ss_pred CCCeEEEEEEE--eCCcEEeEEEecCCCEEEEeeCCEEeeeceEe
Q psy17724 83 DGGRTYVGRAR--HEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYE 125 (128)
Q Consensus 83 dGe~LYVGRa~--h~G~l~PGKV~p~~~~c~IpygG~E~~~~~YE 125 (128)
.|+.+=||-.. -+|...|=.|..+....|=.|+|.|.....=|
T Consensus 37 ~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~ky~Gtevk~dg~e 81 (95)
T 3nx6_A 37 KGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQYAGSSYKSEGVE 81 (95)
T ss_dssp EEEEEEECSCEECTTSCEECCSCCTTCEEEECTTCSEEEEETTEE
T ss_pred ccEEEEECCCeECCCCCEEccccCCCCEEEECCcCCeEEEECCEE
Confidence 34445555433 35677777777888888989999998876433
No 10
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=12.47 E-value=2.6e+02 Score=18.18 Aligned_cols=41 Identities=2% Similarity=0.025 Sum_probs=28.3
Q ss_pred eEEEecCCCCeEEEEEEEeCCcEEeEEEecC-CCEEEEeeCCEE
Q psy17724 76 VKVGRDEDGGRTYVGRARHEGDLLPAKVAPS-HGGAFVPWGGLE 118 (128)
Q Consensus 76 V~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~-~~~c~IpygG~E 118 (128)
.++..=..|+.++ +| .-+|...+|+|... +..|+|-|+.+.
T Consensus 11 ~pa~~~~~geDVL-~r-w~DG~fYLGtIVd~~~~~ClV~FeD~S 52 (69)
T 2xk0_A 11 SPAVTYALQEDVF-IK-CNDGRFYLGTIIDQTSDQYLIRFDDQS 52 (69)
T ss_dssp CCCCCCCTTCEEE-EE-CTTSCEEEEEEEEECSSCEEEEETTCC
T ss_pred CcccccccCCeEE-EE-ecCCCEEEEEEEecCCceEEEEecCCc
Confidence 3333344777777 44 55678889998764 678999998654
Done!