RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17724
(128 letters)
>gnl|CDD|128937 smart00696, DM9, Repeats found in Drosophila proteins.
Length = 71
Score = 94.3 bits (235), Expect = 8e-27
Identities = 36/66 (54%), Positives = 44/66 (66%)
Query: 61 YAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHS 120
Y WV S+G +P NAV G D DG YVGRA +EG LLP KV PSHG A++P+GG E
Sbjct: 2 YVWVPSSDGNIPPNAVVGGTDSDGEPLYVGRAYYEGSLLPGKVVPSHGCAYIPYGGQEVR 61
Query: 121 KFNYEI 126
+YE+
Sbjct: 62 LDSYEV 67
>gnl|CDD|221302 pfam11901, DUF3421, Protein of unknown function (DUF3421). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 119 to 296
amino acids in length.
Length = 118
Score = 80.3 bits (199), Expect = 1e-20
Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 51 HELPHHHV----GVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPS 106
E + V G WV S G VP NAV GR EDG Y+GR ++G L P KV PS
Sbjct: 43 IEKTTYEVLCGTGFVEWVPSSGGNVPKNAVLAGRTEDGEPLYIGRGHYDGSLTPGKVHPS 102
Query: 107 HGGAFVPWGGLEHS 120
HG ++P+GG E
Sbjct: 103 HGCCYIPYGGAELR 116
Score = 71.9 bits (177), Expect = 2e-17
Identities = 29/49 (59%), Positives = 34/49 (69%)
Query: 78 VGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEI 126
G D DG YVGRA+HEGD+LPAKV PS G +VP+GG E K YE+
Sbjct: 2 GGHDSDGATIYVGRAKHEGDILPAKVVPSKGACYVPYGGKEIEKTTYEV 50
>gnl|CDD|221881 pfam12982, DUF3866, Protein of unknown function (DUF3866). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 352 and 374 amino
acids in length.
Length = 320
Score = 28.7 bits (65), Expect = 0.82
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 18 IIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVP 72
I+ AV L R V + + +S P RERH + HH + V+ + +VP
Sbjct: 204 ILNAV-SVLGGRPVAIPR-ISFADP----RERHRGISHHSLTALGRVALAPADVP 252
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit.
Length = 509
Score = 28.6 bits (64), Expect = 1.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 24 GRLKARVVMVTKMVSMGGPHWWSRERHHELPHHH 57
G + + V + VS+ W E+ HE
Sbjct: 350 GLYPEKALSVLRSVSLRMELWSREEKRHEALELP 383
>gnl|CDD|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1151
Score = 27.2 bits (61), Expect = 3.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 35 KMVSMG---GPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVK 77
K+VS G ++ R H L H G+ A +C GEVP +K
Sbjct: 105 KIVSKAFTEGFYYKPRVDHELLKEHSEGLIALSACLAGEVPRYILK 150
>gnl|CDD|217738 pfam03801, Ndc80_HEC, HEC/Ndc80p family. Members of this family
are components of the mitotic spindle. It has been shown
that Ndc80/HEC from yeast is part of a complex called
the Ndc80p complex. This complex is thought to bind to
the microtubules of the spindle.
Length = 159
Score = 26.1 bits (58), Expect = 4.3
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
Query: 34 TKMVSMGGPHWWSRERHHELPHHHVGVYAW 63
+++ ++GGPH W +G W
Sbjct: 114 SQLSAVGGPHTW---------PTFLGALHW 134
>gnl|CDD|165517 PHA03259, PHA03259, Capsid triplex subunit 2; Provisional.
Length = 302
Score = 26.6 bits (59), Expect = 4.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 49 RHHELPHHHVGVYAWVS 65
RHH + H +G+Y V
Sbjct: 34 RHHLIGHTQLGLYQIVD 50
>gnl|CDD|227317 COG4984, COG4984, Predicted membrane protein [Function unknown].
Length = 644
Score = 26.4 bits (58), Expect = 4.8
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 17 PIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWV 64
VT VV+++ + S G +++ R + + + + V
Sbjct: 193 GWALIVTYNNSGYVVLLSWLASAGLVYYYKEYRRFDFLNLILLFFYLV 240
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 26.1 bits (58), Expect = 7.2
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 24/66 (36%)
Query: 5 VQTKIIV--EGRFRPI-----IAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHH 57
+ +++V + RF I A R ++V +M HELPHHH
Sbjct: 154 LTARLLVAADSRFSATRRQLGIGADMHDF-GRTMLVCRM-------------RHELPHHH 199
Query: 58 VGVYAW 63
AW
Sbjct: 200 T---AW 202
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 25.7 bits (57), Expect = 9.9
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 17 PIIAAVTGRLKARVVMVTKMVSM----GG--PHWWSRERHHELPHHHVGVYAWVSCSNGE 70
P +A G L+ R V+V + W R GV AW
Sbjct: 120 PKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAG 179
Query: 71 VPANAVKVGRD 81
+ G D
Sbjct: 180 LAPPPHTAGPD 190
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.446
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,710,173
Number of extensions: 591620
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 23
Length of query: 128
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 42
Effective length of database: 7,123,158
Effective search space: 299172636
Effective search space used: 299172636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)