RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17724
         (128 letters)



>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 140

 Score = 24.4 bits (53), Expect = 4.4
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 42 PHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGG 85
           HW       E+ H++ G    +  S          +G     G
Sbjct: 50 SHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEG 93


>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 346

 Score = 24.3 bits (52), Expect = 5.8
 Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 6/60 (10%)

Query: 28  ARVVMVTKMVSMGGPHWWSRERHHE------LPHHHVGVYAWVSCSNGEVPANAVKVGRD 81
            +  +V +         W+++                 V    +C     P +AV    D
Sbjct: 201 VKDQVVQQNTDGKNKDDWAKDLKQMDFELLCQNGAREPVDNAENCHLARAPNHAVVARDD 260


>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase
           subunit D, GatD {Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 352

 Score = 23.5 bits (50), Expect = 9.4
 Identities = 12/50 (24%), Positives = 15/50 (30%)

Query: 32  MVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRD 81
           +V +   +G           E     V V     C NG V  N    GR 
Sbjct: 246 IVIEGTGLGHCPDTLIPVIGEAHDMGVPVAMTSQCLNGRVNMNVYSTGRR 295


>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide
          dehydrogenase {Garden pea (Pisum sativum) [TaxId:
          3888]}
          Length = 221

 Score = 23.6 bits (50), Expect = 9.4
 Identities = 10/62 (16%), Positives = 17/62 (27%)

Query: 20 AAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVG 79
          A    +L  +   + K  ++GG          +   H   +Y     S          V 
Sbjct: 19 AIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 78

Query: 80 RD 81
           D
Sbjct: 79 ID 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,585
Number of extensions: 23603
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 8
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)