BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17727
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 139/236 (58%), Gaps = 6/236 (2%)
Query: 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
W G F + + +FN S++ D L+RED+ + H ML ++ ++ E I+K L
Sbjct: 6 WGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLD 65
Query: 87 DIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRN 146
IE +IE G + ELED+HMN+E+ L +G G KLHT RSRNDQV DLRL+ R
Sbjct: 66 RIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGA 125
Query: 147 IKALIKLLLDTVKQLTRLAQLH--KHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
I L+ LLL + L R A+ H +++PG+TH Q AQP+ L H+ LAY M +RD R
Sbjct: 126 IDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGR 185
Query: 205 LLDCRRRVNVNPLGSAAL---GAPHTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L D + R+N +PLG+AAL G P + TA ELG +P +SL+++ F +E
Sbjct: 186 LEDAKERLNESPLGAAALAGTGFP-IDRHFTARELGFKAPMRNSLDAVASRDFALE 240
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 3/227 (1%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 62
Query: 86 KDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
+ D+ + L+ + EDIH +E +LI ++G +G+KLHTGRSRNDQV DL+L+ +
Sbjct: 63 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCK 122
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
+ L+ L AQ ++ +MPG+TH Q AQP++ H+ LAY M RD R
Sbjct: 123 DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 182
Query: 205 LLDCRRRVNVNPLGSAALG--APHTTTNATAPELGLDSPRGDSLESI 249
L D +R++V+PLG AL A A LG S +SL+S+
Sbjct: 183 LQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSV 229
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 117/205 (57%)
Query: 20 PKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKE 79
E ++LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + +
Sbjct: 2 ASESQKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMD 61
Query: 80 LIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDL 139
I+ L + + G +L EDIH E L IG KLHTGRSRNDQVV DL
Sbjct: 62 QILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDL 121
Query: 140 RLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFR 199
RL+ R+ L LL + ++ + A+ + + PG+TH Q AQPI H++L++A
Sbjct: 122 RLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALT 181
Query: 200 RDIERLLDCRRRVNVNPLGSAALGA 224
RD ERLL+ R+R+NV PLGS A+
Sbjct: 182 RDSERLLEVRKRINVLPLGSGAIAG 206
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 116/205 (56%)
Query: 20 PKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKE 79
E +LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + +
Sbjct: 2 ASESGKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMD 61
Query: 80 LIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDL 139
I+ L + + G +L EDIH E L IG KLHTGRSRNDQVV DL
Sbjct: 62 QILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDL 121
Query: 140 RLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFR 199
RL+ R+ L LL + ++ + A+ + + PG+TH Q AQPI H++L++A
Sbjct: 122 RLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALT 181
Query: 200 RDIERLLDCRRRVNVNPLGSAALGA 224
RD ERLL+ R+R+NV PLGS A+
Sbjct: 182 RDSERLLEVRKRINVLPLGSGAIAG 206
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G +K EDIH E L IG++ KLHTGRSRNDQVV DL+LF +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG+TH Q AQPI +LL++A RD ER
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 243
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G +K EDIH E L IG++ KLHTGRSRNDQVV DL+LF +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG+TH Q AQPI +LL++A RD ER
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 243
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 129/235 (54%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G +K EDIH E L IG++ KLHTGRSRNDQVV DL+LF +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG++H Q AQPI +LL++A RD ER
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYSHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 243
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 129/235 (54%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G +K EDI+ E L IG++ KLHTGRSRNDQVV DL+LF +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG+TH Q AQPI +LL++A RD ER
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 243
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 128/235 (54%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G +K EDIH E L IG++ KLHTGRSRNDQVV DL+LF +
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMK 128
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG+ H Q AQPI +LL++A RD ER
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 243
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 127/235 (54%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +++ N SI+ D+ L DI SIA+ L + I+ + + E I+
Sbjct: 7 KLMGGRFVGSTDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G +K EDIH E L IG++ KLHTGRSRN+QVV DL+LF +
Sbjct: 67 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMK 126
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG+TH Q AQPI +LL++A RD ER
Sbjct: 127 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 186
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 187 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 241
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +Q + SIS ++ L DI SIA+ L + I+ + + E I+
Sbjct: 7 KLMGGRFVGSTDPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I ++ G + + EDI E L IG++ KLHTGRSRN+QVV DL+LF +
Sbjct: 67 LEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMK 126
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG+TH Q AQPI +LL++A RD ER
Sbjct: 127 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 186
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 187 LGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 241
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 125/235 (53%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +Q + S+S ++ L DI SIA+ L + I+ + + E I+
Sbjct: 6 KLMGGRFVGSTDPIMQMLSTSMSTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 65
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G + EDIH E L IG++ KL+TGRSRN+QVV DL+LF +
Sbjct: 66 LEKISEEWSKGVFVVTQSDEDIHTANERRLKELIGDIAGKLNTGRSRNEQVVTDLKLFMK 125
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ + LL +K L A + I+PG+TH Q AQPI +LL++A RD ER
Sbjct: 126 NSLSVISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 185
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + +RR+NV PLGS AL G P EL S +S+++I F +E
Sbjct: 186 LGEVKRRINVLPLGSGALAGNPLDIDREMLRSELDFASISLNSMDAISERDFVVE 240
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 2/222 (0%)
Query: 38 FLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKV 97
+++ N SI+ D+ L DI GS+A+ L + I+ + + E I+ L+ I + G
Sbjct: 4 IMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVF 63
Query: 98 ELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDT 157
+K EDIH E L IG++ KL+TGRSRNDQVV DL+LF + ++ + LL
Sbjct: 64 VVKQSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQL 123
Query: 158 VKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPL 217
+K L A + I+PG+T+ Q AQPI +LL++A RD ERL + ++R+NV PL
Sbjct: 124 IKTLVERAAIEIDVILPGYTNLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPL 183
Query: 218 GSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
GS AL G P EL S +S+++I F +E
Sbjct: 184 GSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVE 225
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 2/235 (0%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S++ ++ + SIS ++ L DI S+A+ L + +I+ + + E I+
Sbjct: 7 KLLGGRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
L+ I + G + + EDI IE L IG++ KL TGRSRN+QVV DL+L +
Sbjct: 67 LEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLK 126
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
+I + LL +K L A + IMPG+TH Q A PI +LL++A RD ER
Sbjct: 127 SSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSER 186
Query: 205 LLDCRRRVNVNPLGSAAL-GAP-HTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L + ++R+ V PLGS L G P EL + S +S+++I F +E
Sbjct: 187 LGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVE 241
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 120 NVGRKLHTGRSRNDQVVLDLRLFTR-RNIKALIKLLLDTVKQL--TRL--AQLHKHHIMP 174
+ R +H G + D +LD + R+ A+++ + V+Q T L AQ ++H +M
Sbjct: 99 DAARYVHWGATSQD--ILDTACILQCRDALAIVQ---NQVQQCYETALSQAQTYRHQVMM 153
Query: 175 GFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSA 220
G T Q A PI+LGH L +AS F+RD++R+ + RV V LG A
Sbjct: 154 GRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGA 199
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 123 RKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182
R +H G + ND + L RR + A+ + QL +A+ +K M G TH Q+A
Sbjct: 88 RYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWA 147
Query: 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNATAPELGLDSPR 242
+PI+LG +A+ + E + CR+ A +G T A+ ELGL+ R
Sbjct: 148 EPITLG---FKFANYY---YELYIACRQLALAEEFIRAKIGGA-VGTMASWGELGLEVRR 200
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 119 GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTV-KQLTRLAQLHKHHIMPGFT 177
G G+ LH G + D ++ + R+ ALI +++V K L LA+ H+ M G T
Sbjct: 92 GEAGKYLHWGATTQD-IMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRT 150
Query: 178 HFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
H Q A P++ G+ + S F R RL + RV V A+
Sbjct: 151 HLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGAS 194
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 118 IGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFT 177
+G + +H G + D V L ++ + ++K L + V L A+ HK+ IM G T
Sbjct: 92 LGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRT 151
Query: 178 HFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
H A+P + G L + +R++ER V V L S A+G
Sbjct: 152 HGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKL-SGAVG 196
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 147 IKALIKLLLDTVK----QLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDI 202
+ +L+ L++T K + + A I G TH Q A PI LG AYA + RDI
Sbjct: 153 VLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDI 212
Query: 203 ERLLDCRRRVNVNPLGSAALG 223
ER+ + R + +G+ A+G
Sbjct: 213 ERIANTRNNLYDINMGATAVG 233
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 147 IKALIKLLLDTVK----QLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDI 202
+ +L+ L++T K + + A I G TH Q A PI LG AYA + RDI
Sbjct: 153 VLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDI 212
Query: 203 ERLLDCRRRVNVNPLGSAALG 223
ER+ + R + +G+ A+G
Sbjct: 213 ERIANTRNNLYDINMGATAVG 233
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 118 IGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALI---KLLLDTVKQ----LTRLAQLHKH 170
IG R H G + +D VLD N AL+ K+LL+++K+ L +A +KH
Sbjct: 81 IGEDSRFFHYGLTSSD--VLDTA-----NSLALVEAGKILLESLKEFCDVLWEVANRYKH 133
Query: 171 HIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
G TH A+P S G +L + S +R+++RL V+ + S A+G
Sbjct: 134 TPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKI-SGAVG 185
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 118 IGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALI---KLLLDTVKQ----LTRLAQLHKH 170
IG R H G + +D VLD N AL+ K+LL+++K+ L +A +KH
Sbjct: 80 IGEDSRFFHYGLTSSD--VLDTA-----NSLALVEAGKILLESLKEFCDVLWEVANRYKH 132
Query: 171 HIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
G TH A+P S G +L + S +R+++RL V+ + S A+G
Sbjct: 133 TPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKI-SGAVG 184
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 118 IGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFT 177
+G + +H G + D V L ++ L+K L V + A+ HK+ +M G T
Sbjct: 81 LGEERKWVHYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRT 140
Query: 178 HFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
H A+P + G L + +R++ER + + V + S A+G
Sbjct: 141 HGVHAEPTTFGLKLALWHEEMKRNLERFKQAKAGIEVGKI-SGAVG 185
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 143 TRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDI 202
T ++ LI L + L A+ K + G TH A P++LG YA I
Sbjct: 155 TEAAVRDLIPALEYLQQALATKAKAWKTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGI 214
Query: 203 ERLLDCRRRVNVNPLGSAALGAPHTTTNATAPELGLDSPRG 243
ER+ R+ P+G A+G GL++P G
Sbjct: 215 ERVKATLPRLGELPIGGTAVGT------------GLNAPDG 243
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 119 GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTH 178
G+ H G + +D + L L R ++ +IK L L A+ K I G +H
Sbjct: 82 AETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSH 141
Query: 179 FQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210
FA+P+S G L F+R ++ L D ++
Sbjct: 142 GMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQK 173
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNA 231
+ G TH A P++LG YA IER+ C R LG A+G T
Sbjct: 181 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPR-----LGELAIGGTAVGTGL 235
Query: 232 TAPE 235
AP+
Sbjct: 236 NAPD 239
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNA 231
+ G TH A P++LG YA IER+ C R LG A+G T
Sbjct: 181 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPR-----LGELAIGGTAVGTGL 235
Query: 232 TAPE 235
AP+
Sbjct: 236 NAPD 239
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 101 VELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQ 160
+ + ++ N SEL+ + + RK+H N + T ++ AL+ L + Q
Sbjct: 104 MNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQ 163
Query: 161 LTRLAQLHKHH-------IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213
L L Q + G TH Q A P++LG + + +M +++ + V
Sbjct: 164 LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVA 223
Query: 214 VNPLGSAALG 223
LG A+G
Sbjct: 224 ELALGGTAVG 233
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNA 231
+ G TH A P++LG YA IER+ C R LG A+G T
Sbjct: 182 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPR-----LGELAIGGTAVGTGL 236
Query: 232 TAPE 235
AP+
Sbjct: 237 NAPD 240
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 101 VELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQ 160
+ + ++ N SEL+ + + RK+H N + T ++ AL+ L + Q
Sbjct: 104 MNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQ 163
Query: 161 LTRLAQLHKHH-------IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213
L L Q + G TH Q A P++LG + + +M +++ + V
Sbjct: 164 LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVA 223
Query: 214 VNPLGSAALG 223
LG A+G
Sbjct: 224 ELALGGTAVG 233
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNA 231
+ G TH A P++LG YA IER+ C R LG A+G T
Sbjct: 203 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPR-----LGELAIGGTAVGTGL 257
Query: 232 TAPE 235
AP+
Sbjct: 258 NAPD 261
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 101 VELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQ 160
+ + ++ N SEL+ + + RK+H N + T ++ AL+ L + Q
Sbjct: 104 MNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQ 163
Query: 161 LTRLAQLHKHH-------IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213
L L Q + G TH Q A P++LG + + +M +++ + V
Sbjct: 164 LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVA 223
Query: 214 VNPLGSAALG 223
LG A+G
Sbjct: 224 ELALGGTAVG 233
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNA 231
+ G TH A P++LG YA IER+ R + LG A+G T
Sbjct: 190 VKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERV-----RATLPRLGELAIGGTAVGTGL 244
Query: 232 TAPE 235
APE
Sbjct: 245 NAPE 248
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 143 TRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDI 202
T ++ LI L L A+ + + G TH A P++LG YA I
Sbjct: 171 TEAAVRHLIPALEVLHASLAAKAKQWRTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGI 230
Query: 203 ERLLDCRRRVNVNPLGSAALGAPHTTTNATAPE 235
ER+ + + LG A+G T APE
Sbjct: 231 ERV-----KATLPRLGELAIGGTAVGTGLNAPE 258
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 175 GFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCR---RRVNVNPLGSAALG----APHT 227
G T Q A PI+LG A+A+ R D RL + R VN LG A+G A H
Sbjct: 205 GRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVN---LGGTAIGTRINASHA 261
Query: 228 TTNATAPELGLDS-----PRGDSLESIWRPG-FTIESG 259
EL S G+ +E+ W G F SG
Sbjct: 262 YAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSG 299
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 175 GFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCR---RRVNVNPLGSAALG----APHT 227
G T Q A PI+LG A+A+ R D RL + R VN LG A+G A H
Sbjct: 188 GRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVN---LGGTAIGTRINASHA 244
Query: 228 TTNATAPELGLDS-----PRGDSLESIWRPG-FTIESG 259
EL S G+ +E+ W G F SG
Sbjct: 245 YAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSG 282
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 101 VELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQ 160
+ + ++ N SEL+ + + RK+H N + T ++ AL+ L + Q
Sbjct: 104 MNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQ 163
Query: 161 LTRLAQLHKHH-------IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213
L L Q + G T+ Q A P++LG + + +M +++ + V
Sbjct: 164 LKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVA 223
Query: 214 VNPLGSAALG 223
LG A+G
Sbjct: 224 ELALGGTAVG 233
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 101 VELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQ 160
+ + ++ N SEL+ + + RK++ N + T ++ AL+ L + Q
Sbjct: 104 MNMNEVLANRASELLGGVRGMERKVNPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQ 163
Query: 161 LTRLAQLHKHH-------IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213
L L Q + G TH Q A P++LG + + +M +++ + V
Sbjct: 164 LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVA 223
Query: 214 VNPLGSAALG 223
LG A+G
Sbjct: 224 ELALGGTAVG 233
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 123 RKLHTGRSRNDQVVLDLRLFTRRN---IKALIKLLLDTVKQLTRLAQLHKHHIMP--GFT 177
R +H G + D + L L R I+A + L DT+ Q Q KH P G T
Sbjct: 98 RYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQ-----QALKHADTPLVGRT 152
Query: 178 HFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
Q A P++LG L R +RL + R R+ V G A+
Sbjct: 153 WLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGAS 196
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 125 LHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183
++ G+S ND + + T K LI L + + L ++ I G TH Q A
Sbjct: 155 VNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDAT 214
Query: 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
P++L Y + +ER+ D ++V + G A+G
Sbjct: 215 PLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVG 254
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
R I L+ L K L + H I G TH Q A P++LG YA+ I+R
Sbjct: 187 RVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKR 246
Query: 205 LLDCRRRVNVNPLGSAALGAPHTTTNATAPELGLDSPRGDSLESIWRPGFT 255
+ + L A G T AP +G + + +I GFT
Sbjct: 247 I-----EXTLPGLCELAQGGTAVGTGLNAP-VGFAEKVAEEIAAITGIGFT 291
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 119 GNVGRK-LHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRL-------AQLHKH 170
G +G K +H N + T +I A +++ + + +LT L ++ H
Sbjct: 146 GKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDH 205
Query: 171 HIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
+ G TH Q A P++LG Y I+R+ + ++ G A+G
Sbjct: 206 IVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVG 258
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 239 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 296
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 233 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 290
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 125 LHTGRSRNDQ------VVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTH 178
++ G+S ND V + L L R L + ++ T AQ + G TH
Sbjct: 134 VNRGQSSNDTFPTAMYVAVALALHQR-----LYPAVEGLIRTFTAKAQAFDQIVKVGRTH 188
Query: 179 FQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
A PI+LG + ++A+ + + + + + + +G A+G
Sbjct: 189 LMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVG 233
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIRRIGN 120
I+YD HGK + VE + H+ ++ ++IR + N
Sbjct: 47 IKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNN 79
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|B Chain B, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|H Chain H, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|K Chain K, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 441
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG---KVELKVE-LEDIHMNIES 112
+AGS T LG+ ++ D++ + I+KT+ D+ Y + G +EL + L ++ E
Sbjct: 231 LAGSADFKTELGQSDLFDQRLQSRIIKTV-DVSYGGDAGFNQAIELAADTLSNVKYVQEK 289
Query: 113 ELIRRI 118
+LI+R
Sbjct: 290 KLIQRF 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,931,911
Number of Sequences: 62578
Number of extensions: 316291
Number of successful extensions: 831
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 57
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)