Query psy17727
Match_columns 261
No_of_seqs 189 out of 1397
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:26:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 3.2E-62 6.9E-67 453.6 22.0 237 24-260 3-241 (459)
2 PLN02646 argininosuccinate lya 100.0 6E-59 1.3E-63 442.3 22.3 237 24-260 16-254 (474)
3 KOG1316|consensus 100.0 3.5E-57 7.5E-62 400.4 19.4 237 24-260 6-244 (464)
4 PRK00855 argininosuccinate lya 100.0 1.5E-55 3.1E-60 418.9 23.3 236 25-260 5-242 (459)
5 TIGR00838 argH argininosuccina 100.0 1.2E-55 2.5E-60 419.3 22.4 235 26-260 1-238 (455)
6 PRK04833 argininosuccinate lya 100.0 9.2E-55 2E-59 412.5 22.6 236 25-260 2-240 (455)
7 PRK06389 argininosuccinate lya 100.0 5.1E-54 1.1E-58 401.4 20.4 229 25-260 2-235 (434)
8 PRK06705 argininosuccinate lya 100.0 1E-53 2.2E-58 409.0 21.6 238 21-260 6-247 (502)
9 PRK12425 fumarate hydratase; P 100.0 3.3E-53 7.2E-58 401.8 22.5 248 2-260 1-277 (464)
10 PRK00485 fumC fumarate hydrata 100.0 1.2E-52 2.5E-57 399.0 22.7 249 1-260 2-279 (464)
11 PRK12308 bifunctional arginino 100.0 1.7E-52 3.6E-57 410.7 22.5 236 25-260 2-240 (614)
12 PRK12273 aspA aspartate ammoni 100.0 1.2E-51 2.7E-56 392.3 23.0 247 3-260 5-281 (472)
13 cd01357 Aspartase Aspartase. T 100.0 1.5E-51 3.3E-56 389.9 23.0 246 4-260 1-274 (450)
14 PRK13353 aspartate ammonia-lya 100.0 1.4E-50 3E-55 385.2 23.0 247 3-260 5-279 (473)
15 cd01359 Argininosuccinate_lyas 100.0 1.2E-50 2.7E-55 383.2 21.2 214 47-260 3-218 (435)
16 PRK14515 aspartate ammonia-lya 100.0 3.5E-50 7.5E-55 381.7 23.7 247 3-260 11-285 (479)
17 cd01334 Lyase_I Lyase class I 100.0 2.1E-50 4.6E-55 368.6 20.9 207 54-260 2-213 (325)
18 TIGR00979 fumC_II fumarate hyd 100.0 5.7E-50 1.2E-54 379.4 22.6 246 4-260 2-276 (458)
19 PLN00134 fumarate hydratase; P 100.0 9.4E-50 2E-54 378.0 22.6 231 25-260 10-271 (458)
20 cd01362 Fumarase_classII Class 100.0 1.4E-49 3E-54 376.7 22.7 246 4-260 1-275 (455)
21 cd01596 Aspartase_like asparta 100.0 2.6E-49 5.7E-54 374.2 22.9 246 4-260 1-274 (450)
22 TIGR00839 aspA aspartate ammon 100.0 2.7E-49 5.8E-54 375.3 22.6 246 4-260 1-277 (468)
23 PF00206 Lyase_1: Lyase; Inte 100.0 3E-50 6.6E-55 365.7 13.2 232 29-260 1-250 (312)
24 PRK02186 argininosuccinate lya 100.0 1.3E-48 2.8E-53 397.1 22.7 208 52-260 437-647 (887)
25 TIGR02426 protocat_pcaB 3-carb 100.0 1.6E-48 3.5E-53 357.5 19.3 222 28-260 3-231 (338)
26 cd01360 Adenylsuccinate_lyase_ 100.0 2.7E-48 5.9E-53 362.0 19.3 214 36-260 5-221 (387)
27 cd01595 Adenylsuccinate_lyase_ 100.0 3.6E-48 7.7E-53 360.8 15.2 205 51-260 9-222 (381)
28 PRK05975 3-carboxy-cis,cis-muc 100.0 2E-47 4.3E-52 351.5 18.8 224 25-260 9-239 (351)
29 PRK08470 adenylosuccinate lyas 100.0 4.9E-47 1.1E-51 358.6 18.6 217 30-260 4-224 (442)
30 cd01597 pCLME prokaryotic 3-ca 100.0 7.6E-47 1.6E-51 357.6 17.8 222 27-260 2-231 (437)
31 PRK07492 adenylosuccinate lyas 100.0 1.3E-46 2.9E-51 354.6 17.1 219 30-260 4-227 (435)
32 PRK06390 adenylosuccinate lyas 100.0 2E-46 4.3E-51 355.5 17.4 224 27-260 6-235 (451)
33 COG0015 PurB Adenylosuccinate 100.0 4.9E-46 1.1E-50 346.2 17.6 216 28-260 2-231 (438)
34 PRK08540 adenylosuccinate lyas 100.0 6.5E-46 1.4E-50 352.1 17.3 222 27-260 6-236 (449)
35 PRK07380 adenylosuccinate lyas 100.0 8E-46 1.7E-50 349.0 17.4 216 30-260 4-224 (431)
36 TIGR00928 purB adenylosuccinat 100.0 3.7E-45 8.1E-50 345.8 19.9 218 28-260 2-230 (435)
37 PRK09053 3-carboxy-cis,cis-muc 100.0 9.1E-45 2E-49 344.4 17.8 225 25-260 6-240 (452)
38 cd03302 Adenylsuccinate_lyase_ 100.0 4.2E-44 9E-49 338.3 16.9 222 28-260 2-237 (436)
39 PRK09285 adenylosuccinate lyas 100.0 9E-41 2E-45 316.3 16.0 223 26-260 11-259 (456)
40 cd01598 PurB PurB_like adenylo 100.0 6.3E-41 1.4E-45 314.5 14.2 209 40-260 3-237 (425)
41 PLN02848 adenylosuccinate lyas 100.0 1.8E-39 3.8E-44 307.3 16.9 224 26-260 14-262 (458)
42 COG1027 AspA Aspartate ammonia 100.0 6.1E-39 1.3E-43 289.0 18.7 248 2-260 3-280 (471)
43 COG0114 FumC Fumarase [Energy 100.0 1.6E-38 3.5E-43 286.9 21.1 245 1-260 1-278 (462)
44 KOG1317|consensus 100.0 3.1E-29 6.7E-34 221.5 16.5 240 13-260 31-303 (487)
45 KOG2700|consensus 99.9 6.2E-25 1.3E-29 201.1 9.6 203 56-260 35-250 (481)
46 cd01594 Lyase_I_like Lyase cla 99.9 5.9E-21 1.3E-25 165.7 13.9 99 110-208 16-120 (231)
47 PF10925 DUF2680: Protein of u 74.0 15 0.00033 25.1 5.7 36 57-92 17-52 (59)
48 PF09851 SHOCT: Short C-termin 63.0 19 0.0004 21.1 3.8 26 60-85 4-29 (31)
49 KOG4797|consensus 53.6 51 0.0011 25.4 5.7 37 132-168 54-90 (123)
50 KOG2700|consensus 45.9 54 0.0012 31.5 5.9 89 108-197 160-255 (481)
51 PF03533 SPO11_like: SPO11 hom 33.9 93 0.002 19.6 3.7 25 192-216 9-33 (43)
52 PF06014 DUF910: Bacterial pro 33.8 1.6E+02 0.0034 20.4 5.2 42 37-80 9-50 (62)
53 PF14735 HAUS4: HAUS augmin-li 30.8 3.7E+02 0.0081 23.6 9.2 21 189-209 106-126 (238)
54 CHL00180 rbcR LysR transcripti 29.5 1.8E+02 0.004 25.5 6.6 51 166-217 44-94 (305)
55 TIGR00637 ModE_repress ModE mo 29.3 2.2E+02 0.0047 21.2 6.0 52 166-217 41-97 (99)
56 PRK12683 transcriptional regul 24.9 2.9E+02 0.0062 24.5 7.0 47 167-213 42-88 (309)
57 PF01166 TSC22: TSC-22/dip/bun 23.6 20 0.00044 24.4 -0.5 36 133-168 2-37 (59)
58 PF07408 DUF1507: Protein of u 20.7 2.4E+02 0.0051 21.0 4.4 20 68-87 59-78 (90)
59 PRK12682 transcriptional regul 20.3 3.8E+02 0.0083 23.5 6.9 49 166-214 41-89 (309)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-62 Score=453.62 Aligned_cols=237 Identities=46% Similarity=0.696 Sum_probs=232.4
Q ss_pred hhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCC
Q psy17727 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (261)
Q Consensus 24 ~~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (261)
+++|||||.+.+++....|+.|..+|++|++++|.+.+||+++|++.|+|+++++++|.++|.++.+++..+.|.+++..
T Consensus 3 ~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~~~ 82 (459)
T COG0165 3 NKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDD 82 (459)
T ss_pred CCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
||||+++|+.|.+++|+.|+|+|+||||||||.|+++||+|+.+..|.+.+..|+++|+++|++|.+++||||||+|+||
T Consensus 83 EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHlQ~AQ 162 (459)
T COG0165 83 EDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQ 162 (459)
T ss_pred ccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|+|||||+.+|.+.|.||++||.+++++++.+|||+||++||++ ||+++|++|||+.+..|++|++++||+++|+++
T Consensus 163 Pvtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGagAlaGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~ 241 (459)
T COG0165 163 PVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLS 241 (459)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCHHHHHHHcCCchhhcCchhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999875
No 2
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=6e-59 Score=442.34 Aligned_cols=237 Identities=42% Similarity=0.676 Sum_probs=228.9
Q ss_pred hhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCC
Q psy17727 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (261)
Q Consensus 24 ~~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (261)
+++|++||+.++.+.+..|..|..+|+++++++|.+.+||++||.++|+||++++++|.++|+++..+...+.|+++++.
T Consensus 16 ~~~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~~~ 95 (474)
T PLN02646 16 KKLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKFEWRPDR 95 (474)
T ss_pred hhhhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcCCCCC
Confidence 36999999998888899999999999999999999999999999999999999999999999999988777899988888
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
+|+||++|++|.+++|+.|+|||+|+|||||++|+++|++|+.+..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 96 ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~dtvmpGrTHlQ~Aq 175 (474)
T PLN02646 96 EDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQ 175 (474)
T ss_pred CchHHHHHHHHHHHhchhhCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccce
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|||||||+++|+++|.|+++||.+++++++.+|||||+++||++ ||+++|++|||..|..|++||+++||+++|+++
T Consensus 176 PiT~G~~l~~~~~~l~rd~~RL~~~~~r~~~~pLGgga~aGt~~~idr~~~A~~LGf~~~~~n~~da~~~RD~~~e~~~ 254 (474)
T PLN02646 176 PVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLGSCALAGTGLPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLF 254 (474)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhcCCCCCCCHHHHHHHhCCCCCCCChHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 899999999999999999999999999999865
No 3
>KOG1316|consensus
Probab=100.00 E-value=3.5e-57 Score=400.40 Aligned_cols=237 Identities=37% Similarity=0.592 Sum_probs=233.2
Q ss_pred hhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCC
Q psy17727 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (261)
Q Consensus 24 ~~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (261)
.++|||||...+++.+..|+.|+.+|++||..|+.++.||+++|.+.|+|++++.++|.+.+++|..+|..+.|.+.|+.
T Consensus 6 ~KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~p~d 85 (464)
T KOG1316|consen 6 QKLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLNPND 85 (464)
T ss_pred hhhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCceEeCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
||||++.|+.|.+.+|+.++++|+||||||||.|.++||+|+++..++..+.+|++++.++|+.+.|++||||||+|.||
T Consensus 86 EDvHtanErrL~eliG~~agKlHTgRSRNDQV~TDlRLw~r~~i~~~~~~l~~L~~~~v~rAe~~~dvlmpGYTHLQRAQ 165 (464)
T KOG1316|consen 86 EDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHLQRAQ 165 (464)
T ss_pred hhhhhHHHHHHHHHHhhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeccChhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|+.|.||+.+++..|.||..||.+++.|++.+|||+||.+|+++ ||+++++.|||..+..|++++++.||+++||.+
T Consensus 166 pvrwsH~LlSha~~l~~D~~Rl~q~~~R~n~~PLGagALAGnpl~iDR~~la~~LgF~~v~~NSm~AvsDRDFVvef~f 244 (464)
T KOG1316|consen 166 PVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGAGALAGNPLGIDREFLAEELGFEGVIMNSMDAVSDRDFVVEFLF 244 (464)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHhccCCcccchhcCCCCCccHHHHHHhcCCcccchhhhhccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999975
No 4
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.5e-55 Score=418.93 Aligned_cols=236 Identities=50% Similarity=0.766 Sum_probs=228.1
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCc
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 104 (261)
++||++++.++.+.+.+|..+..+++.++++++.+.+||+.++.+.|+||++++++|.++|+++..+...+.|++++.++
T Consensus 5 ~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~al~~i~~~~~~~~~~~~~~~~ 84 (459)
T PRK00855 5 KLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAGLDEILEEIEAGKFEFSPELE 84 (459)
T ss_pred cccccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCcccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999998876668899888999
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17727 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (261)
Q Consensus 105 dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P 184 (261)
|+|++||.++.+++|+.|+|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|+|||
T Consensus 85 d~~~~ie~~l~~~~g~~g~~iH~g~SrnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 164 (459)
T PRK00855 85 DIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQP 164 (459)
T ss_pred cHHHHHHHHHHHHhccccCcccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCcccee
Confidence 99999999999999977889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 185 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||||||+++|+++|.|+++||.+++++++.+||||++++||++ +++++|++|||+.+..|+++|+++||+++++++
T Consensus 165 ~T~G~~l~~~~~~L~r~~~rL~~~~~~~~~~plGgaag~gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~ 242 (459)
T PRK00855 165 VTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLS 242 (459)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcCCCCCcCHHHHHHHcCCCCCCCCHHHHHHccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999865
No 5
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=1.2e-55 Score=419.29 Aligned_cols=235 Identities=45% Similarity=0.676 Sum_probs=225.4
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcc
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d 105 (261)
+|++||+.++.+.+..|+.+..+|..++++++.+.+||+++|.+.|+||++++++|.++|+++..+...+.|++++..||
T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d 80 (455)
T TIGR00838 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGREGPFILDPDDED 80 (455)
T ss_pred CCCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCcCCCCCcCc
Confidence 58999998888888899999999999999999999999999999999999999999999999998876677888888999
Q ss_pred hhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17727 106 IHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (261)
Q Consensus 106 v~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P 184 (261)
+||++|.++.+++| +.|+|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|||||
T Consensus 81 ~~~~ie~~l~e~~g~~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P 160 (455)
T TIGR00838 81 IHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRAQP 160 (455)
T ss_pred HHHHHHHHHHHHhCCCccCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccccccee
Confidence 99999999999999 77889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 185 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|||||||++|+++|.|+++||.+++++++.+|||||+++||++ +++++|+.|||+.+..|++||+++||+++++++
T Consensus 161 ~T~G~~~~~~~~~L~r~~~rL~~~~~~~~~~plGg~a~aGt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~ 238 (455)
T TIGR00838 161 ITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILELLF 238 (455)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhcccCCCCCCCHHHHHHHcCCCCCcCCHHHHHhCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 999999999999888899999999999999865
No 6
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=9.2e-55 Score=412.51 Aligned_cols=236 Identities=35% Similarity=0.579 Sum_probs=220.9
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCC-CceeccCC
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVEL 103 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~-~~~~~~~~ 103 (261)
.+|++||+.++++....|+.+..+|.++.+++|++.+||+++|+++|+||++++++|.++|+++..+...+ .+.+++..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 81 (455)
T PRK04833 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDA 81 (455)
T ss_pred cCcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcCCcccCCCCC
Confidence 47899999987788889999999999999999999999999999999999999999999999986553222 44456688
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
+|+|.+|+.+|.+++|+.|+|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+||||
T Consensus 82 edv~~~ie~~L~~~~g~~g~~lH~grSrnD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTH~Q~Aq 161 (455)
T PRK04833 82 EDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSALVETAENNQDAVMPGYTHLQRAQ 161 (455)
T ss_pred chHHHHHHHHHHHHhccccCcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCccce
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||||||||++|+++|.|+++||.+++++++.+||||++++||++ +++++|++|||+.|..|++|++++||+++|+++
T Consensus 162 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgaA~~GT~~~~dr~~~a~~LGf~~~~~n~~~a~~~rd~~~e~~~ 240 (455)
T PRK04833 162 PVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS 240 (455)
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCHHHHHHHhCCCCCCCCHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999998889988 999999999999999999999999999999865
No 7
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=5.1e-54 Score=401.40 Aligned_cols=229 Identities=24% Similarity=0.380 Sum_probs=213.8
Q ss_pred hhhcccccchHH-HHHHhc-ccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccC
Q psy17727 25 QLWTGCFQQSMN-EFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE 102 (261)
Q Consensus 25 ~l~~~r~~~~~~-~~~~~f-~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~ 102 (261)
++|+|||+.+++ +.++.| +.|..+|.+++++++.+.+||++||++.|+||++++++|.++|.++.+ +.+++++.
T Consensus 2 klw~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~L~~i~~----~~~~~~~~ 77 (434)
T PRK06389 2 KIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYK----NGIEIDLD 77 (434)
T ss_pred CCcccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc----CCCcCCCC
Confidence 499999999887 667888 899999999999999999999999999999999999999999999865 57888889
Q ss_pred CcchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17727 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (261)
Q Consensus 103 ~~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A 182 (261)
.||+|+++|.+|.+++|+.|+++|+|||||||+.|+++|++|+.+..+...|.+++++|+++ |.|++||||||+|+|
T Consensus 78 ~EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat~~RL~~r~~~~~~~~~l~~l~~~l~~~---~~dtimpGyTHlQ~A 154 (434)
T PRK06389 78 LEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLFIIDKIIEIEKILYEIIKVIPGF---NLKGRLPGYTHFRQA 154 (434)
T ss_pred CCchHHHHHHHHHHHhchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCceeccccccCcC
Confidence 99999999999999999889999999999999999999999999999999999999999964 999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhH-HHHhc
Q psy17727 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGF-TIESG 259 (261)
Q Consensus 183 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~-~~e~~ 259 (261)
||+|||||+++|+++|.|+++||.+++++++.+|||+|+++||++ +++++|++|||+.+..|+.+++.+||+ +++++
T Consensus 155 qP~TfG~~l~a~a~~L~rd~~RL~~~~~r~~~~pLGaga~~Gt~~~idr~~~A~lLGf~~~~~n~~~a~~~~~~~~~e~~ 234 (434)
T PRK06389 155 MPMTVNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENIS 234 (434)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCCchhhHHHHHHHhCCCCCCCCCchhhhccchHHHHHH
Confidence 999999999999999999999999999999999999998889988 999999999999888888777666655 77775
Q ss_pred C
Q psy17727 260 H 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 235 ~ 235 (434)
T PRK06389 235 Y 235 (434)
T ss_pred H
Confidence 4
No 8
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1e-53 Score=409.05 Aligned_cols=238 Identities=26% Similarity=0.375 Sum_probs=216.8
Q ss_pred hhhhhhhcccccchHHHHHHhcccccchhhhcc-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCcee
Q psy17727 21 KELKQLWTGCFQQSMNEFLQQFNESISVDEVLY-REDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL 99 (261)
Q Consensus 21 ~~~~~l~~~r~~~~~~~~~~~f~~~~~~~~~l~-~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~ 99 (261)
..|..+|++||++.+.+... |..+..++.+.+ ..-+.+.+||+++|+++|+||++++++|.+++.++.. ...+.+.+
T Consensus 6 ~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~~~~~-~~~~~l~~ 83 (502)
T PRK06705 6 EEFIKSEGADFPGKTYVDCV-LQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVEE-IPEEQLLY 83 (502)
T ss_pred hhhHHHhcccCCCCcchhHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-cccCcccc
Confidence 44457999999998877666 877777765443 3446699999999999999999999999999987732 34566777
Q ss_pred ccCCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy17727 100 KVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTH 178 (261)
Q Consensus 100 ~~~~~dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH 178 (261)
++.+||+|++||..+.+..| +.|+|+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||
T Consensus 84 ~~~~edv~~~ie~~l~~~~G~~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~t~m~g~TH 163 (502)
T PRK06705 84 TEQHEDLFFLVEHLISQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTH 163 (502)
T ss_pred CCCCCchHHHHHHHHHHhcCchhhccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccC
Confidence 78999999999999999998 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHH
Q psy17727 179 FQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTI 256 (261)
Q Consensus 179 ~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~ 256 (261)
+|||||||||||+++|+++|.||++||.+++++++.+|||||+++|+++ +++++|++|||+.|..|+++++++||+++
T Consensus 164 ~Q~AqP~T~G~~l~~~~~~l~r~~~rL~~~~~r~~~~plGgaag~gt~~~~~r~~~a~~LGf~~~~~ns~~a~~~rD~~~ 243 (502)
T PRK06705 164 TQPAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTSFPIKRERVADLLGFTNVIENSYDAVAGADYLL 243 (502)
T ss_pred CccceehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhhhhccCCchHHHHHHHHHcCCCCCcCCHHHHHhccHHHH
Confidence 9999999999999999999999999999999999999999999999999 99999999999998889988889999999
Q ss_pred HhcC
Q psy17727 257 ESGH 260 (261)
Q Consensus 257 e~~~ 260 (261)
|+++
T Consensus 244 e~~~ 247 (502)
T PRK06705 244 EVSS 247 (502)
T ss_pred HHHH
Confidence 9875
No 9
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=3.3e-53 Score=401.81 Aligned_cols=248 Identities=15% Similarity=0.165 Sum_probs=222.9
Q ss_pred ccccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17727 2 MLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKEL 80 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~ 80 (261)
|.|||+|.= |+.+.| . ..|||. +|.+.+++|+.+. .+...+++....+.+||++++.+.|+|+++++++
T Consensus 1 ~~r~e~d~~-g~~~~p---~--~~~~g~----~t~ra~~nf~~~~~~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~ 70 (464)
T PRK12425 1 MSRTETDSL-GPIEVP---E--DAYWGA----QTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARL 70 (464)
T ss_pred CCCcCcccC-CCCCCc---c--cccchH----HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 789999998 999999 3 469998 9999999999875 4445666777888999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCcee----ccCCcchhhhHHHHHHHHh----C-ccCCc--------cccCCChhhHHHHHHHHHH
Q psy17727 81 IVKTLKDIEYDIEHGKVEL----KVELEDIHMNIESELIRRI----G-NVGRK--------LHTGRSRNDQVVLDLRLFT 143 (261)
Q Consensus 81 I~~al~~i~~~~~~~~~~~----~~~~~dv~~~ie~~l~~~~----g-~~g~~--------iH~G~SsnDi~~Ta~~L~l 143 (261)
|.++|++|..+...+.|++ ..+++|+|||+|++|.+++ | +.|++ ||+|+||||+++|+++|++
T Consensus 71 I~~al~ei~~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~ 150 (464)
T PRK12425 71 IEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAA 150 (464)
T ss_pred HHHHHHHHHcCcccCCCCccCCCCCCcchHHHHHHHHHHHHHHHHhCcccccccccCchhcccCCCChhhHHHHHHHHHH
Confidence 9999999998877788986 2358999999988887665 5 36667 9999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q psy17727 144 RRNI-KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAAL 222 (261)
Q Consensus 144 r~~l-~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~ 222 (261)
|+++ ..+.+.|..++++|.++|++|++++||||||+|+||||||||||++|+++|.|+++||.+++++++.+|+||||+
T Consensus 151 r~~l~~~l~~~L~~l~~~L~~~A~~~~~tim~GrTHlQ~A~PiT~G~~~~a~~~~l~rd~~RL~~~~~r~~~~plGggAv 230 (464)
T PRK12425 151 AQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAV 230 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 9999 599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc--Ch-------HHHHhhcCCCCC-CCCcccccchhhHHHHhcC
Q psy17727 223 GAPHT--TT-------NATAPELGLDSP-RGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 223 ~Gt~~--~~-------~~la~~LGl~~~-~~n~~~~~~~rD~~~e~~~ 260 (261)
||++ ++ +.+++.|||+.+ ..|++|++++||+++|+++
T Consensus 231 -GT~~~~~~~~~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~ 277 (464)
T PRK12425 231 -GTGLNAPHGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSG 277 (464)
T ss_pred -cCcccCCccHHHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHH
Confidence 9987 43 336888899964 7889999999999999875
No 10
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=1.2e-52 Score=398.99 Aligned_cols=249 Identities=20% Similarity=0.262 Sum_probs=222.3
Q ss_pred CccccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcccc-cchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy17727 1 MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNES-ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKE 79 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~-~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~ 79 (261)
|-.|||.|.- |+.+.|.+ ++||+ .+.+.+++|+.+ ..+|..++++.+.+..||+++++++|+||++.++
T Consensus 2 ~~~r~e~d~~-g~~~~~~~-----~l~g~----~~~~~~~~f~~s~~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~ 71 (464)
T PRK00485 2 METRIEKDSM-GEVEVPAD-----ALWGA----QTQRSLENFPIGGERMPRELIRALALLKKAAARVNAELGLLDAEKAD 71 (464)
T ss_pred CCcccccccC-CCcCCccc-----cccch----hhHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3469999998 99999943 59998 577889999877 7889989899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHH----HhC-c--------cCCccccCCChhhHHHHHHHHH
Q psy17727 80 LIVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIR----RIG-N--------VGRKLHTGRSRNDQVVLDLRLF 142 (261)
Q Consensus 80 ~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~----~~g-~--------~g~~iH~G~SsnDi~~Ta~~L~ 142 (261)
+|.++|+++......+.|+.++ .++++||+++.++.. ..| + .++|||+|+|||||++|+++|+
T Consensus 72 ~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~ 151 (464)
T PRK00485 72 AIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIA 151 (464)
T ss_pred HHHHHHHHHHhCccccCCCcchhhccccccccccHHHHHHHHHHHhcCccccccCccCccccCCCCCCchhHHHHHHHHH
Confidence 9999999986543346677766 789999999776653 335 4 4567779999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q psy17727 143 TRRNI-KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221 (261)
Q Consensus 143 lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a 221 (261)
+|+++ ..+.+.|..++++|.++|++|+||+||||||+|+||||||||||++|+++|.|+++||.+++++++++||||||
T Consensus 152 lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~pLGg~A 231 (464)
T PRK00485 152 AVLAIVERLLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTA 231 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeecCcCceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999 79999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cCCCCc--ChH-------HHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 222 LGAPHT--TTN-------ATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 222 ~~Gt~~--~~~-------~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+ ||++ +++ ++|++|||+ .+..|++|++++||+++|+++
T Consensus 232 v-GT~~~~~~~~~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~ 279 (464)
T PRK00485 232 V-GTGLNAHPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASG 279 (464)
T ss_pred c-cCCccCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHH
Confidence 6 8877 765 599999999 778889999999999999875
No 11
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=1.7e-52 Score=410.68 Aligned_cols=236 Identities=36% Similarity=0.592 Sum_probs=221.3
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCC-CceeccCC
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVEL 103 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~-~~~~~~~~ 103 (261)
.+|++||+.++.+.+..|+.+..+++++..++|.+.+||+++|++.|+||++++++|.+++.++..+...+ .+...+..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~ 81 (614)
T PRK12308 2 ALWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDA 81 (614)
T ss_pred cccccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 48999999988888889999999999998999999999999999999999999999999998875442222 44456678
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
+|+|..++++|.+++|+.|+|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+||||
T Consensus 82 ed~h~~ie~~L~~~~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~Q~A~ 161 (614)
T PRK12308 82 EDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQ 161 (614)
T ss_pred ccHHHHHHHHHHHHhcccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCcccE
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|||||||+++|+++|.|+++||.+++++++.+|||||+++||++ +++++|+.|||+.|..|++||+++||+++|+++
T Consensus 162 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgga~agt~~~~~r~~~a~~LG~~~~~~n~~da~~~rd~~~e~~~ 240 (614)
T PRK12308 162 PVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMS 240 (614)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhccccCCCCCCCHHHHHHHhCCCCCcCCHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 999999999999988999999999999999875
No 12
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=1.2e-51 Score=392.28 Aligned_cols=247 Identities=22% Similarity=0.240 Sum_probs=219.5
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKE 79 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~--~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~ 79 (261)
.||+.|+- |+.+.| . ..|||. +|.+.+.+|+.+. .+- ..++++++++.+||++++++.|+||+++++
T Consensus 5 ~r~~~~~~-~~~~~~---~--~~~~~~----~t~~~~~~f~~~~~~~~~~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~ 74 (472)
T PRK12273 5 TRIEKDLL-GEREVP---A--DAYYGI----HTLRAVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKAD 74 (472)
T ss_pred cccccccC-CCcCCc---c--cccchH----HHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999998 999998 3 348888 9999999998654 333 456688999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCCceeccC----CcchhhhHHHHHH----HHhC-ccCCc--cc------cCCChhhHHHHHHHHH
Q psy17727 80 LIVKTLKDIEYDIEHGKVELKVE----LEDIHMNIESELI----RRIG-NVGRK--LH------TGRSRNDQVVLDLRLF 142 (261)
Q Consensus 80 ~I~~al~~i~~~~~~~~~~~~~~----~~dv~~~ie~~l~----~~~g-~~g~~--iH------~G~SsnDi~~Ta~~L~ 142 (261)
+|.++|.++..+...+.|+++.. ++|+||+++.++. +++| +.|+| +| +|+||||+++|+++|+
T Consensus 75 ~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~~~e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~ 154 (472)
T PRK12273 75 AIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIA 154 (472)
T ss_pred HHHHHHHHHHhccccCCcccchhhccccchhhhHHHHHHHHHHHHHhCcccCCcceeCCCCCCCCCCCchHHHHHHHHHH
Confidence 99999999876544456766554 8999999998854 4788 55667 99 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q psy17727 143 TRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAAL 222 (261)
Q Consensus 143 lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~ 222 (261)
+|+++..+.+.|..++++|.++|++|+||+||||||+|||||||||||+++|+++|.|+++||.+++++++.+||||||+
T Consensus 155 lr~~l~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~AqP~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~plGg~Av 234 (472)
T PRK12273 155 LLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAI 234 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCEEeecccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCc--ChH-------HHHhhcCCCC-CCCCcccccchhhHHHHhcC
Q psy17727 223 GAPHT--TTN-------ATAPELGLDS-PRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 223 ~Gt~~--~~~-------~la~~LGl~~-~~~n~~~~~~~rD~~~e~~~ 260 (261)
||++ +++ ++|+.|||+. +..|++|++++||+++|+++
T Consensus 235 -GT~~~i~~~~~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~ 281 (472)
T PRK12273 235 -GTGLNAPPGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSG 281 (472)
T ss_pred -eCCCCCChhHHHHHHHHHHHHcCCCcccCcCHHHHHhCcHHHHHHHH
Confidence 8877 654 4799999994 66799999999999999875
No 13
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=1.5e-51 Score=389.87 Aligned_cols=246 Identities=22% Similarity=0.247 Sum_probs=218.2
Q ss_pred ccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17727 4 DIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIV 82 (261)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~ 82 (261)
||+.|+- |+.+.| . ..+||. ++.+.+.+|+... .+|..++++++.+..||++++++.|+||++++++|.
T Consensus 1 ~~~~~~~-~~~~~~---~--~~~~g~----~t~~~~~~~~~~~~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~ 70 (450)
T cd01357 1 RIEHDLL-GEREVP---A--DAYYGI----QTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIV 70 (450)
T ss_pred CCCcccC-CCcCCc---c--cccchH----HHHHHHHcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 6888888 999999 3 348888 9999999998644 778888899999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCceecc----CCcchhhhHHHHHH----HHhC-ccCCc--------cccCCChhhHHHHHHHHHHHH
Q psy17727 83 KTLKDIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVGRK--------LHTGRSRNDQVVLDLRLFTRR 145 (261)
Q Consensus 83 ~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~----~~~g-~~g~~--------iH~G~SsnDi~~Ta~~L~lr~ 145 (261)
++|+++..+...+.|++++ .++++|++++.++. +++| +.|+| ||+|+||||+++|+++|++|+
T Consensus 71 ~al~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~ 150 (450)
T cd01357 71 KACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALIL 150 (450)
T ss_pred HHHHHHHhccccCCCccchhhccccchhhhhHhHHHHHHHHHHhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHH
Confidence 9999886543335666655 45799999885554 4588 55787 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCC
Q psy17727 146 NIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAP 225 (261)
Q Consensus 146 ~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt 225 (261)
++..+.+.|..++++|.++|++|++|+||||||+|+|||||||||+++|+++|.|+++||.+++++++.+||||+|+ ||
T Consensus 151 ~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~Av-Gt 229 (450)
T cd01357 151 LLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAI-GT 229 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCce-eC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777 88
Q ss_pred Cc--ChHH-------HHhhcCCCC-CCCCcccccchhhHHHHhcC
Q psy17727 226 HT--TTNA-------TAPELGLDS-PRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 226 ~~--~~~~-------la~~LGl~~-~~~n~~~~~~~rD~~~e~~~ 260 (261)
++ ++++ +|++|||+. +..|+++++++||+++++++
T Consensus 230 ~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~ 274 (450)
T cd01357 230 GINAPPGYIELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSG 274 (450)
T ss_pred CCCCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHH
Confidence 66 6655 999999994 56799999999999999875
No 14
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=1.4e-50 Score=385.18 Aligned_cols=247 Identities=20% Similarity=0.219 Sum_probs=216.9
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I 81 (261)
.||+.|.- |+...| . ..|||. +|.+.+.+|+.+. .+...+++..+.+.+||++++++.|+||++++++|
T Consensus 5 ~r~~~d~~-g~~~~~---~--~~~~g~----~t~r~~~~f~~~~~~~~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I 74 (473)
T PRK13353 5 MRIEHDLL-GEKEVP---A--EAYYGI----QTLRAVENFPITGYKIHPELIRAFAQVKKAAALANADLGLLPRRIAEAI 74 (473)
T ss_pred cccccccC-CCCCCc---c--cccchH----HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 47899998 888888 3 458998 9999999998754 44455567778899999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHH----HHhC-ccCCc--------cccCCChhhHHHHHHHHHHH
Q psy17727 82 VKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVGRK--------LHTGRSRNDQVVLDLRLFTR 144 (261)
Q Consensus 82 ~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~----~~~g-~~g~~--------iH~G~SsnDi~~Ta~~L~lr 144 (261)
.++|+++..+...+.|++++ .++|+||+++.++. +++| +.|+| ||+|+||||+++|+++|++|
T Consensus 75 ~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~~~l~e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r 154 (473)
T PRK13353 75 VQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAAL 154 (473)
T ss_pred HHHHHHHHhccccCCCCcchhhccccchhcchhhHHHHHHHHHHhCccccCCccCCcccCccCCCChhhHHHHHHHHHHH
Confidence 99999987654346777665 45799999655555 8888 45775 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCC
Q psy17727 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGA 224 (261)
Q Consensus 145 ~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~G 224 (261)
+++..+.+.|..++++|.++|++|++++||||||+|+|||||||||+++|+++|.|+++||.+++++++.+||||+|+ |
T Consensus 155 ~~l~~l~~~L~~l~~~L~~~A~~~~~~im~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~Av-G 233 (473)
T PRK13353 155 NLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAV-G 233 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999888 8
Q ss_pred CCc--ChHH-------HHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 225 PHT--TTNA-------TAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 225 t~~--~~~~-------la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|++ ++++ ++++|||+ .+..|+++++++||+++++++
T Consensus 234 T~~~~~~~~~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~ 279 (473)
T PRK13353 234 TGLNADPEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSG 279 (473)
T ss_pred CCccCChhHHHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHH
Confidence 877 6543 78999999 567799999999999999875
No 15
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=1.2e-50 Score=383.23 Aligned_cols=214 Identities=51% Similarity=0.777 Sum_probs=201.5
Q ss_pred chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhCccCCccc
Q psy17727 47 SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLH 126 (261)
Q Consensus 47 ~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g~~g~~iH 126 (261)
.+|..++++.+.+..||++++++.|+||++.+++|.++|.++..+...+.+..++..+|+|+++|++|++++|+.|+|||
T Consensus 3 ~~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~iH 82 (435)
T cd01359 3 SFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIGDVGGKLH 82 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccCCCCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 34566678889999999999999999999999999999999876656677877778999999999999999998889999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy17727 127 TGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLL 206 (261)
Q Consensus 127 ~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~ 206 (261)
+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+++||.
T Consensus 83 ~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL~ 162 (435)
T cd01359 83 TGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLA 162 (435)
T ss_pred ccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEecCCCCCccceeccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 207 DCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 207 ~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+++++++.+||||++++||++ +++++|++|||+.+..|+++++++||+++++++
T Consensus 163 ~~~~~~~~~~lGgaag~gt~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~ 218 (435)
T cd01359 163 DAYKRVNVSPLGAGALAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLS 218 (435)
T ss_pred HHHHHhCcCCcccccccCCCCCCCHHHHHHHcCCCCCccCHHHHHhcchHHHHHHH
Confidence 999999999999999999999 999999999999888888788899999999875
No 16
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=3.5e-50 Score=381.71 Aligned_cols=247 Identities=19% Similarity=0.212 Sum_probs=218.5
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcc-cccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~-~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I 81 (261)
.|||+|.- |+...| . ..|||. +|.+.+++|. .+..++..++++++.+.+||++++.+.|+|+++.+++|
T Consensus 11 ~r~e~d~~-g~~~~p---~--~~~~g~----~t~ra~~~f~~~~~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I 80 (479)
T PRK14515 11 VRIEKDFL-GEKEVP---N--YAYYGV----QTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAI 80 (479)
T ss_pred CccccccC-CCCCCc---c--cccchH----HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 47889988 888888 3 468998 9999999995 45688899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCceecc--CCcc--hhhh----HHHHHHHHhCc-cCCc--------cccCCChhhHHHHHHHHHHH
Q psy17727 82 VKTLKDIEYDIEHGKVELKV--ELED--IHMN----IESELIRRIGN-VGRK--------LHTGRSRNDQVVLDLRLFTR 144 (261)
Q Consensus 82 ~~al~~i~~~~~~~~~~~~~--~~~d--v~~~----ie~~l~~~~g~-~g~~--------iH~G~SsnDi~~Ta~~L~lr 144 (261)
.++|++|..+...+.|++++ ++.+ .||| |+..+.+++|+ .|+| ||+||||||+++|+++|++|
T Consensus 81 ~~al~ei~~~~~~~~f~~~~~~~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~ 160 (479)
T PRK14515 81 AEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATL 160 (479)
T ss_pred HHHHHHHHcCcccCCCCCCcccCCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHHHHHHHHH
Confidence 99999999887778998877 3344 6677 66666777784 4774 55999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCC
Q psy17727 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGA 224 (261)
Q Consensus 145 ~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~G 224 (261)
+.+..+.+.|..++++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||||+ |
T Consensus 161 ~~l~~l~~~L~~L~~~L~~~A~~~~~~vm~GrTHlQ~A~PiT~G~~~~~~a~~l~r~~~RL~~~~~~l~~~pLG~gAv-G 239 (479)
T PRK14515 161 NALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAV-G 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998888 9
Q ss_pred CCc--ChHH-------HHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 225 PHT--TTNA-------TAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 225 t~~--~~~~-------la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|++ ++++ +++.+|+. .+..|++|++++||+++++++
T Consensus 240 T~~~~~~~~~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~ 285 (479)
T PRK14515 240 TGLNADPEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSA 285 (479)
T ss_pred CCCCCChhHHHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHH
Confidence 988 6643 56667876 334589999999999999864
No 17
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=2.1e-50 Score=368.60 Aligned_cols=207 Identities=35% Similarity=0.471 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhCcc-CCccccCCChh
Q psy17727 54 REDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNV-GRKLHTGRSRN 132 (261)
Q Consensus 54 ~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g~~-g~~iH~G~Ssn 132 (261)
++.+.+..||++++++.|+||+++++.|.++|.++..+.....+......+|+|+++|++|++++|+. ++|+|+|+|||
T Consensus 2 ~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH~G~S~n 81 (325)
T cd01334 2 RADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHTGRSSN 81 (325)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCccCCCCc
Confidence 45677889999999999999999999999999998876544434556788999999999999999976 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17727 133 DQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRV 212 (261)
Q Consensus 133 Di~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~ 212 (261)
|+++|+++|++|+++..+.+.|.+++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+++||.++++++
T Consensus 82 Di~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~ 161 (325)
T cd01334 82 DIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRL 161 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccccCCCCc----ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 213 NVNPLGSAALGAPHT----TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 213 ~~~~lGg~a~~Gt~~----~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+.+|||+|+++|+++ +++++|+.|||..+..|+++++++||+++|+++
T Consensus 162 ~~~~lG~gA~g~~~~~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~ 213 (325)
T cd01334 162 NVLPLGGGAVGTGANAPPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLS 213 (325)
T ss_pred hhcCCcHhHHhCcCCCCcchHHHHHHHhcCcCcCcCHHHHHhCcHHHHHHHH
Confidence 999999777756644 889999999997788888888999999999875
No 18
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=5.7e-50 Score=379.43 Aligned_cols=246 Identities=20% Similarity=0.266 Sum_probs=217.8
Q ss_pred ccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17727 4 DIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIV 82 (261)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~ 82 (261)
|||+|.- |+...| . .+|||. ++.+..++|..+. .+...+++..+.+..||++++++.|+||++.+++|.
T Consensus 2 r~e~d~~-g~~~~p---~--~~~~g~----~t~r~~~~f~~~~~~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~ 71 (458)
T TIGR00979 2 RIEKDSM-GEIQVP---A--DKYWGA----QTQRSLENFKIGTEKMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIV 71 (458)
T ss_pred CCccccC-CCCCCc---c--cchhhH----HHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 8999998 999998 3 458988 9999999999864 445566677788889999999999999999999999
Q ss_pred HHHHHHHhhhhCCCceec----cCCcchhhhHHH----HHHHHhC-ccC--Cccc------cCCChhhHHHHHHHHHHHH
Q psy17727 83 KTLKDIEYDIEHGKVELK----VELEDIHMNIES----ELIRRIG-NVG--RKLH------TGRSRNDQVVLDLRLFTRR 145 (261)
Q Consensus 83 ~al~~i~~~~~~~~~~~~----~~~~dv~~~ie~----~l~~~~g-~~g--~~iH------~G~SsnDi~~Ta~~L~lr~ 145 (261)
++|+++..+...+.|+.+ ..++++||+++. .+.+++| +.| +||| +|+||||++||+++|++|+
T Consensus 72 ~a~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~~l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~ 151 (458)
T TIGR00979 72 QAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVL 151 (458)
T ss_pred HHHHHHHhccccCCCceecccccccccccccHHHHHHHHHHHHcCcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 999998765444667665 468999999988 7788887 454 4699 6999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCC
Q psy17727 146 NI-KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGA 224 (261)
Q Consensus 146 ~l-~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~G 224 (261)
++ ..+.+.|..++++|.++|++|+||+|+||||+|||||||||||+++|+++|.|+++||.+++++++.+||||+|+ |
T Consensus 152 ~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av-G 230 (458)
T TIGR00979 152 AIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAV-G 230 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCeeecccccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChh-c
Confidence 99 699999999999999999999999999999999999999999999999999999999999999999999999787 8
Q ss_pred CCc--ChH-------HHHhhcCCCC-CCCCcccccchhhHHHHhcC
Q psy17727 225 PHT--TTN-------ATAPELGLDS-PRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 225 t~~--~~~-------~la~~LGl~~-~~~n~~~~~~~rD~~~e~~~ 260 (261)
|++ +++ ++++.|||+. +..|+++++++||+++|+++
T Consensus 231 T~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~ 276 (458)
T TIGR00979 231 TGLNTHPGFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHG 276 (458)
T ss_pred CCccCChhHHHHHHHHHHHHhCCCCeecCcHHHHHcccHHHHHHHH
Confidence 877 655 5999999996 67788788899999999875
No 19
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=9.4e-50 Score=377.97 Aligned_cols=231 Identities=22% Similarity=0.235 Sum_probs=206.2
Q ss_pred hhhcccccchHHHHHHhccccc---chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceecc
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESI---SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~---~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~ 101 (261)
.|||. ++.+.+++|+.+. .+...++.....+.+||++++.+.|+||++++++|.++|+++..+...+.|++++
T Consensus 10 ~~~g~----~t~ra~~nf~~~~~~~~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~~~~f~~~~ 85 (458)
T PLN00134 10 KLWGA----QTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVV 85 (458)
T ss_pred cchhH----HHHHHHHhcCCCCCccCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCccccc
Confidence 48988 9999999999876 4445555666778999999999999999999999999999999887778898887
Q ss_pred ----CCcchhhh----HHHHHHHHhC-ccCCc--cc------cCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy17727 102 ----ELEDIHMN----IESELIRRIG-NVGRK--LH------TGRSRNDQVVLDLRLFTRRN-IKALIKLLLDTVKQLTR 163 (261)
Q Consensus 102 ----~~~dv~~~----ie~~l~~~~g-~~g~~--iH------~G~SsnDi~~Ta~~L~lr~~-l~~l~~~l~~l~~~L~~ 163 (261)
.++|+||+ |+.++.+++| +.|+| || +|+||||+++|+++|++|+. +..+.+.|..++++|.+
T Consensus 86 ~~~g~g~~~~~~v~evie~~l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~ 165 (458)
T PLN00134 86 WQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRA 165 (458)
T ss_pred cccCCcccccCcHHHHHHHHHHHHhCcccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 6677778888 46877 88 99999999999999999944 88999999999999999
Q ss_pred HHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChH-------HHHh
Q psy17727 164 LAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTN-------ATAP 234 (261)
Q Consensus 164 ~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~-------~la~ 234 (261)
+|++|+||+||||||+|+|||||||||+++|+++|.|+++||.+++++++.+||||+|+ ||++ +++ ++|+
T Consensus 166 ~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~ 244 (458)
T PLN00134 166 KSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAV-GTGLNTKKGFDEKIAAAVAE 244 (458)
T ss_pred HHHHhcCCccccccccCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeee-cCCccCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999777 8877 766 4999
Q ss_pred hcCCCCC-CCCcccccchhhHHHHhcC
Q psy17727 235 ELGLDSP-RGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 235 ~LGl~~~-~~n~~~~~~~rD~~~e~~~ 260 (261)
.|||+.+ ..|++|++++||+++++++
T Consensus 245 ~LGl~~~~~~n~~da~~~rD~~~e~~~ 271 (458)
T PLN00134 245 ETGLPFVTAPNKFEALAAHDAFVELSG 271 (458)
T ss_pred HhCCCCCCCccHHHHhcCCHHHHHHHH
Confidence 9999965 6788999999999999875
No 20
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.4e-49 Score=376.73 Aligned_cols=246 Identities=21% Similarity=0.267 Sum_probs=213.7
Q ss_pred ccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17727 4 DIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIV 82 (261)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~ 82 (261)
|||.|+- |+.+.| . .+|||. ++.+.+++|+.+. .++..++...+.+..||++++++.|+||++.+++|.
T Consensus 1 ~~~~~~~-~~~~~~---~--~~~~g~----~~~~~~~~f~~~~~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~ 70 (455)
T cd01362 1 RIEKDSM-GEVEVP---A--DALWGA----QTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIV 70 (455)
T ss_pred CCCcccC-CCcCCc---c--ccchhH----HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 6888988 888888 3 358977 8888999997653 444555666788889999999999999999999999
Q ss_pred HHHHHHHhhhhCCCceecc----CCcchhhhHHHHHH----HHhC---------ccCCccccCCChhhHHHHHHHHHHHH
Q psy17727 83 KTLKDIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG---------NVGRKLHTGRSRNDQVVLDLRLFTRR 145 (261)
Q Consensus 83 ~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~----~~~g---------~~g~~iH~G~SsnDi~~Ta~~L~lr~ 145 (261)
++|+++......+.|+.++ ..+++|++++.++. ++.| +.++|||+|+|||||+||+++|++|+
T Consensus 71 ~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~ 150 (455)
T cd01362 71 QAADEVIAGKLDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAAL 150 (455)
T ss_pred HHHHHHHhcccccCCceehhhccccccccccHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHH
Confidence 9999986543346676666 78999999887777 5557 33668999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCC
Q psy17727 146 NIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGA 224 (261)
Q Consensus 146 ~l~-~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~G 224 (261)
++. .+.+.|..++++|.++|++|++|+||||||+|+|||||||||+++|+++|.|+++||.+++++++.+||||+|+ |
T Consensus 151 ~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~-G 229 (455)
T cd01362 151 ALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAV-G 229 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCeec-c
Confidence 995 69999999999999999999999999999999999999999999999999999999999999999999998676 8
Q ss_pred CCc--ChH-------HHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 225 PHT--TTN-------ATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 225 t~~--~~~-------~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|++ +++ ++|+.|||+ .+..|++|++++||+++++++
T Consensus 230 t~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~ 275 (455)
T cd01362 230 TGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASG 275 (455)
T ss_pred CCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHH
Confidence 866 653 789999999 567888999999999999865
No 21
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=2.6e-49 Score=374.19 Aligned_cols=246 Identities=21% Similarity=0.221 Sum_probs=216.1
Q ss_pred ccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17727 4 DIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIV 82 (261)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~ 82 (261)
||+.|+- |+.+.| . .++||+ ++++.+.+|..+. .++..++++.+.+..||++++++.|+||++++++|.
T Consensus 1 ~~~~~~~-~~~~~~---~--~~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~ 70 (450)
T cd01596 1 RIEKDSL-GEVEVP---A--DAYYGA----QTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIV 70 (450)
T ss_pred CCCcccC-CCCCCc---c--cccccH----hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 6899998 999998 3 348998 8888899998763 455666788899999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCceecc----CCcchhhhHHHHHH----HHhC-ccCCc--------cccCCChhhHHHHHHHHHHHH
Q psy17727 83 KTLKDIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVGRK--------LHTGRSRNDQVVLDLRLFTRR 145 (261)
Q Consensus 83 ~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~----~~~g-~~g~~--------iH~G~SsnDi~~Ta~~L~lr~ 145 (261)
++|+++..+...+.|+.++ ..+|+|++++..+. +++| ..|+| +|+|+|||||++|+++|++|+
T Consensus 71 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~ 150 (450)
T cd01596 71 QACDEVIAGKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALA 150 (450)
T ss_pred HHHHHHHcCcccCCCcccHHhccCcccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHHHHHHHHHH
Confidence 9999986543345665554 58899999997543 5567 35777 669999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCC
Q psy17727 146 NIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAP 225 (261)
Q Consensus 146 ~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt 225 (261)
++..+.+.|..++++|.++|++|++++||||||+|+|||||||||+++|+++|.|+++||..++++++.+||||||+ ||
T Consensus 151 ~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGg~A~-Gt 229 (450)
T cd01596 151 LLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAV-GT 229 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcce-eC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777 88
Q ss_pred Cc--ChH-------HHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 226 HT--TTN-------ATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 226 ~~--~~~-------~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
++ +++ ++|++|||+ .+..|++||+++||+++++++
T Consensus 230 ~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~ 274 (450)
T cd01596 230 GLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSG 274 (450)
T ss_pred CCCCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhcchHHHHHHH
Confidence 66 654 479999999 467889999999999999875
No 22
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=100.00 E-value=2.7e-49 Score=375.26 Aligned_cols=246 Identities=18% Similarity=0.177 Sum_probs=213.1
Q ss_pred ccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17727 4 DIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKEL 80 (261)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~--~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~ 80 (261)
|||+|+- |+...| - ..|||. ++.+...+|..+. ++. ...++..+.+..||+++++++|+||++.+++
T Consensus 1 r~~~~~~-~~~~~~---~--~~~~~~----~~~r~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~ 70 (468)
T TIGR00839 1 RIEEDLL-GEREVP---A--DAYYGI----HTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANA 70 (468)
T ss_pred CCCcccC-CCCCCc---c--cccchH----HHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 7899998 888888 2 468888 9999999998654 443 3444667888899999999999999999999
Q ss_pred HHHHHHHHHh-hhhCCCceecc----CCcchhhhH----HHHHHHHhC-ccCCcccc--------CCChhhHHHHHHHHH
Q psy17727 81 IVKTLKDIEY-DIEHGKVELKV----ELEDIHMNI----ESELIRRIG-NVGRKLHT--------GRSRNDQVVLDLRLF 142 (261)
Q Consensus 81 I~~al~~i~~-~~~~~~~~~~~----~~~dv~~~i----e~~l~~~~g-~~g~~iH~--------G~SsnDi~~Ta~~L~ 142 (261)
|.++|.++.. ....+.+++++ .++|+|+++ +..|.+++| +.|+|+|+ |+||||+++|+++|+
T Consensus 71 I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~ 150 (468)
T TIGR00839 71 IVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIA 150 (468)
T ss_pred HHHHHHHHHhcccccccccccHHHccCccccccchHHHHHHHHHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHH
Confidence 9999988743 11123454443 458899997 777788888 67999995 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q psy17727 143 TRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAAL 222 (261)
Q Consensus 143 lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~ 222 (261)
+|+++..+.+.|..++++|.++|++|++|+||||||+|+|||||||||+++|.++|.|+++||.+++++++.+||||+|+
T Consensus 151 lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av 230 (468)
T TIGR00839 151 VYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAI 230 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCc--ChH-------HHHhhcCCCCC-CCCcccccchhhHHHHhcC
Q psy17727 223 GAPHT--TTN-------ATAPELGLDSP-RGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 223 ~Gt~~--~~~-------~la~~LGl~~~-~~n~~~~~~~rD~~~e~~~ 260 (261)
||++ +++ .+|+.|||+.+ ..|++|++++||+++|+++
T Consensus 231 -GT~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~ 277 (468)
T TIGR00839 231 -GTGLNTPPEYSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHG 277 (468)
T ss_pred -eCCCcCChhHHHHHHHHHHHHhCCCCCCCccHHHHhcccHHHHHHHH
Confidence 8876 654 45999999965 5699999999999999875
No 23
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=100.00 E-value=3e-50 Score=365.67 Aligned_cols=232 Identities=33% Similarity=0.431 Sum_probs=205.3
Q ss_pred ccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCC-CceeccCCcchh
Q psy17727 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVELEDIH 107 (261)
Q Consensus 29 ~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~-~~~~~~~~~dv~ 107 (261)
|||..+++++...|+.++.++.++..+++.+..|+++++++.|+||++.+++|.++|+++..+...+ .++++...++++
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~ 80 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLDDAFELDEIEEDIG 80 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSSSHH
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccccccchhhhhccch
Confidence 4777778889999999999988887778889999999999999999999999999999998854433 566666667777
Q ss_pred hhHHHHHHHHhC-------ccCCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCccccccccC
Q psy17727 108 MNIESELIRRIG-------NVGRKLHTGRSRNDQVVLDLRLFTRRNI-KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHF 179 (261)
Q Consensus 108 ~~ie~~l~~~~g-------~~g~~iH~G~SsnDi~~Ta~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~ 179 (261)
..++..|.+.+| +.++|||+|+||||++||+++|++|+++ ..|.+.|..++++|.++|++|++|+||||||+
T Consensus 81 ~~~~~~l~~~~~e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~~grTh~ 160 (312)
T PF00206_consen 81 HAVEANLNEVLGELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAELAEEHKDTPMPGRTHG 160 (312)
T ss_dssp HHHHHHHHHHHHHHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred hHHHHHHHHHhhhhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCceecccccc
Confidence 777765666554 6789999999999999999999999999 66999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChH---HHHhhcC-CCC---CCCCcccccc
Q psy17727 180 QFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTN---ATAPELG-LDS---PRGDSLESIW 250 (261)
Q Consensus 180 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~---~la~~LG-l~~---~~~n~~~~~~ 250 (261)
|+|+|||||+|+++|+++|.|+++||.+++++++.+|||||+++||++ +++ ++++.|| |.. +..|+.+|++
T Consensus 161 Q~A~P~T~G~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgga~g~gt~~~~~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~ 240 (312)
T PF00206_consen 161 QPAQPTTFGHKLAAWADELARDLERLEEARKRLNVSPLGGAVGAGTSLGIDREFQERVAEELGEFTGLGVPAPNWHDAVS 240 (312)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEETTTTTTTSSHTTSHHHHHHHHHHHHHHHHCSTEECSSHHHHHH
T ss_pred ccccceeHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhccCCCccccccccCcchhhhHHhhhhhhhhcccchhhcccccc
Confidence 999999999999999999999999999999999999999999999988 665 7888888 655 7788889999
Q ss_pred hhhHHHHhcC
Q psy17727 251 RPGFTIESGH 260 (261)
Q Consensus 251 ~rD~~~e~~~ 260 (261)
+||+++++++
T Consensus 241 ~rd~~~e~~~ 250 (312)
T PF00206_consen 241 SRDRLAELAS 250 (312)
T ss_dssp CTHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 9999999875
No 24
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.3e-48 Score=397.08 Aligned_cols=208 Identities=25% Similarity=0.330 Sum_probs=195.3
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhC-ccCCccccCCC
Q psy17727 52 LYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRS 130 (261)
Q Consensus 52 l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g-~~g~~iH~G~S 130 (261)
.+++++.+..||++||+++|+||++++++|.+++.++... ....+..++..+|+|+++|++|++++| +.|+|+|+|+|
T Consensus 437 ~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~~L~~~~g~~~~~~lH~grS 515 (887)
T PRK02186 437 ELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDA-GFAPLLARPAPRGLYMLYEAYLIERLGEDVGGVLQTARS 515 (887)
T ss_pred hhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHh-HHhhCcCCCCCcchHHHHHHHHHHHhChhhhcccCcccc
Confidence 4477899999999999999999999999999999877543 233666667788999999999999999 68999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17727 131 RNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210 (261)
Q Consensus 131 snDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~ 210 (261)
||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.||++||.++++
T Consensus 516 rnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~g~TH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~ 595 (887)
T PRK02186 516 RNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFE 595 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCccCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 211 RVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 211 ~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+++.+||||++++||++ +++++|++|||+.|..|+.||+++||+++|+++
T Consensus 596 r~~~~plG~aag~gt~~~~~~~~~a~~LGf~~~~~n~~da~~~rd~~~e~~~ 647 (887)
T PRK02186 596 HIDVCPLGAGAGGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLS 647 (887)
T ss_pred HhCcCCcccccccCCCCCCCHHHHHHHcCCCCCccCHHHHHcccHHHHHHHH
Confidence 99999999999999998 899999999999999999999999999999875
No 25
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=1.6e-48 Score=357.52 Aligned_cols=222 Identities=21% Similarity=0.199 Sum_probs=189.9
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchh
Q psy17727 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH 107 (261)
Q Consensus 28 ~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~ 107 (261)
+++|+++ ++...|++...+ ...+.+.+||++++++.|+||++.+++|.++|+++..+.....- ......+..
T Consensus 3 ~~~~~~~--~~~~i~sd~~~i-----~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~~d~~~~~~-~~~~~~~~~ 74 (338)
T TIGR02426 3 DGLFGDP--AALELFSDRAFL-----RAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAAPDLEALAH-AAATAGNPV 74 (338)
T ss_pred ccccCCH--HHHHHcCCHHHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHHHHHh-HHHhcCCcH
Confidence 4566554 478888875544 44567778888999999999999999999999876433211100 011234445
Q ss_pred hhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccccc
Q psy17727 108 MNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPIS 186 (261)
Q Consensus 108 ~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T 186 (261)
+++|++|++++| +.|+|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|+|++||||||+|+|||||
T Consensus 75 ~~~~~~l~~~~g~~~g~~vH~G~S~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T 154 (338)
T TIGR02426 75 IPLVKALRKAVAGEAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQAVPTT 154 (338)
T ss_pred HHHHHHHHHHhCccccCcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCCCcCeehh
Confidence 789999999998 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 187 LGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 187 ~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|||||++|+++|.|+++||.+++++++.+||||++|+|+++ .++++++.|||+.+..+ |+++||+++|+++
T Consensus 155 ~G~~l~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGtg~~~~~~~~~v~~~~a~~LGl~~~~~~---~~~~rd~~~e~~~ 231 (338)
T TIGR02426 155 FGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAALGTRGGAVAAALAARLGLPLPALP---WHTQRDRIAEFGS 231 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCcchhccCCCccchHHHHHHHHHHHhCcCCCCCc---chhhhHHHHHHHH
Confidence 99999999999999999999999999999999998888875 36889999999987654 8999999999875
No 26
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=2.7e-48 Score=362.01 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=188.5
Q ss_pred HHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHH
Q psy17727 36 NEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELI 115 (261)
Q Consensus 36 ~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~ 115 (261)
.++.+.|++...+.. .+.+..||+++|++.|+||++++++|.++++....... .. ....+||+ +++|++|+
T Consensus 5 ~~~~~~fs~~~~~~~-----~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~--~~-~~~~~~dv-~~~e~~L~ 75 (387)
T cd01360 5 PEMKKIWSEENKFRK-----WLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVK--EI-EAETKHDV-IAFVTAIA 75 (387)
T ss_pred hHHHHHhCHHHHHHH-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHH--HH-HHHhCCCh-HHHHHHHH
Confidence 457888988665533 45666778899999999999999999999865432221 11 12356888 89999999
Q ss_pred HHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHH
Q psy17727 116 RRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYA 195 (261)
Q Consensus 116 ~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~ 195 (261)
+++|+.++|||+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|.
T Consensus 76 ~~~g~~~~~lH~G~S~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~l~~~~ 155 (387)
T cd01360 76 EYCGEAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWY 155 (387)
T ss_pred HHHHHhhhheeCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeehhhcCCcceeehHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccccCCCCc---ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 196 SMFRRDIERLLDCRRRVNVNPLGSAALGAPHT---TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 196 ~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~---~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
++|.|+++||.+++++++.+||||++|+|+++ ++++++++|||+.+..++ ++++||+++|+++
T Consensus 156 ~~L~r~~~rL~~~~~~~~~~~lgga~Gt~~~~~~~~~~~~a~~LG~~~~~~~~--~~~~rD~~~e~~~ 221 (387)
T cd01360 156 AEFKRHLERLKEARERILVGKISGAVGTYANLGPEVEERVAEKLGLKPEPIST--QVIQRDRHAEYLS 221 (387)
T ss_pred HHHHHHHHHHHHHHHHhHhhccchHhhcCccCCHHHHHHHHHHcCCCCCCCCC--cccCcHHHHHHHH
Confidence 99999999999999999999999998888877 689999999999776553 7799999999875
No 27
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=3.6e-48 Score=360.80 Aligned_cols=205 Identities=24% Similarity=0.260 Sum_probs=182.5
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceec-cCCcchhhhHHHHHHHHhCc-cCCccccC
Q psy17727 51 VLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VELEDIHMNIESELIRRIGN-VGRKLHTG 128 (261)
Q Consensus 51 ~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~-~~~~dv~~~ie~~l~~~~g~-~g~~iH~G 128 (261)
.++++++.+..||+++|++.|+||++++++|.++++.+..+... -.... ..+||+ +++|++|++++|+ .++|+|+|
T Consensus 9 ~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~~-~~~~~~~~~~~v-~~~e~~L~~~~g~~~~~~vH~g 86 (381)
T cd01595 9 NKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAER-IAEIEKETGHDV-IAFVYALAEKCGEDAGEYVHFG 86 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHHH-HHHHHHHhCcCc-HHHHHHHHHHhhhHhhhHeecC
Confidence 34577899999999999999999999999999999876433221 11222 368898 9999999999996 79999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy17727 129 RSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDC 208 (261)
Q Consensus 129 ~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~ 208 (261)
+||||+++|+++|++|+++..+.+.|..++++|.++|++|+||+||||||+|||||||||||+++|+++|.|+++||.++
T Consensus 87 ~S~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~dt~m~grTH~Q~A~P~T~G~~~~~~~~~L~r~~~rL~~~ 166 (381)
T cd01595 87 ATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEEA 166 (381)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccc-hhhHHHHhcC
Q psy17727 209 RRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIW-RPGFTIESGH 260 (261)
Q Consensus 209 ~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~-~rD~~~e~~~ 260 (261)
+++++.+||||++++|+++ +++++|+.|||..+ .++|+. +||+++|+++
T Consensus 167 ~~~~~~~~lGga~G~g~~~~~~~~~~~~~~a~~LGl~~~---~~~~~~~~rd~~~e~~~ 222 (381)
T cd01595 167 RERVLVGGISGAVGTHASLGPKGPEVEERVAEKLGLKVP---PITTQIEPRDRIAELLS 222 (381)
T ss_pred HHhchhhhcccHhhhHhhcCCcHHHHHHHHHHHcCCCCC---CCCCCcccchHHHHHHH
Confidence 9999999999998888865 56889999999643 355755 9999999875
No 28
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=2e-47 Score=351.54 Aligned_cols=224 Identities=20% Similarity=0.241 Sum_probs=187.2
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCc
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 104 (261)
.+++.+|+. .++...|++...+..++ +|+.++ ++++++.|+||++.+++|.++|+++..+...-.......++
T Consensus 9 ~~~~~~~~~--~~~~~~~s~~~~i~a~l---~vE~A~--a~a~~~~G~Ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~g~ 81 (351)
T PRK05975 9 PFLSGLFGD--DEIAALFSAEADIAAML---AFEAAL--AEAEAEHGIIPAEAAERIAAACETFEPDLAALRHATARDGV 81 (351)
T ss_pred chhhccCCC--HHHHHHcCcHHHHHHHH---HHHHHH--HHHHHHcCCCCHHHHHHHHHHhccCCCCHHHHhhHHHhcCC
Confidence 367778866 45888999887665533 566555 57789999999999999999997754332211001111234
Q ss_pred chhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 105 DIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 105 dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
++ .++++.|++++| +.++|||+|+||||++||+++|++|+++..|.+.|..++++|.++|++|+||+|+||||+|||+
T Consensus 82 ~v-~~~v~~l~~~~g~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~Q~A~ 160 (351)
T PRK05975 82 VV-PALVRQLRAAVGEEAAAHVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTRMQAAI 160 (351)
T ss_pred cH-HHHHHHHHHHhCchhhCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcCe
Confidence 44 678889999997 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhhHHHH
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPGFTIE 257 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD~~~e 257 (261)
|||||+|+++|+++|.|+++||.+++++++++||||++|+++++ +++++|+.|||+.+. +|+++||++++
T Consensus 161 P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~~~~~~~~~~a~~LGl~~~~----~~~~~rD~~~e 236 (351)
T PRK05975 161 PITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGTLEKLGGKAAAVRARLAKRLGLEDAP----QWHSQRDFIAD 236 (351)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccHhccCccCCCcHHHHHHHHHHHhCcCCCc----chhhccHHHHH
Confidence 99999999999999999999999999999999999988765433 679999999997442 38999999999
Q ss_pred hcC
Q psy17727 258 SGH 260 (261)
Q Consensus 258 ~~~ 260 (261)
+++
T Consensus 237 ~~~ 239 (351)
T PRK05975 237 FAH 239 (351)
T ss_pred HHH
Confidence 865
No 29
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=4.9e-47 Score=358.58 Aligned_cols=217 Identities=20% Similarity=0.284 Sum_probs=186.4
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhhhhCCCceeccCCcchhh
Q psy17727 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK-DIEYDIEHGKVELKVELEDIHM 108 (261)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~-~i~~~~~~~~~~~~~~~~dv~~ 108 (261)
||+. .++...|++.+.+.. .+.+..||+++++++|+||+++++.|.+++. ++.. . .... ...+||+ +
T Consensus 4 ~y~~--~~~~~i~s~~~~~~~-----~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~-~--~~~~-~~~~~dv-~ 71 (442)
T PRK08470 4 RYAR--EEMKKKWTMQAKYDA-----WLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIAR-I--DEIE-KTTKHDL-I 71 (442)
T ss_pred ccCc--HHHHHHcCHHHHHHH-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHH-H--HHHH-HccCCCh-H
Confidence 6764 458888998776644 4556677789999999999999999998873 1110 0 1111 3468999 6
Q ss_pred hHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHH
Q psy17727 109 NIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLG 188 (261)
Q Consensus 109 ~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G 188 (261)
+++++|.+++|+.++|||+|+|||||+||+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||
T Consensus 72 ~~v~~L~e~~g~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG 151 (442)
T PRK08470 72 AFLTSVSESLGEESRFVHYGMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFG 151 (442)
T ss_pred HHHHHHHHHccccccceecCCChhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcCeehhHH
Confidence 77799999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc---ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 189 HYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT---TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 189 ~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~---~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+|+++|+++|.|+++||.+++++++++||||++|+++++ .++++|+.|||+.+..++ ++++||+++|+++
T Consensus 152 ~~~a~~~~~l~r~~~RL~~~~~~~~~~~lgGAvGt~a~~~~~v~~~~a~~LGl~~~~~~~--~v~~RD~~~e~~~ 224 (442)
T PRK08470 152 LVLAIWYDEIKRHLKALEHTMEVISVGKISGAMGNFAHAPLELEELVCEELGLKPAPVSN--QVIQRDRYARLAS 224 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhcccccCChHHHHHHHHHcCCCCCCCCC--CccCcHHHHHHHH
Confidence 999999999999999999999999999999888777766 378999999999554332 6799999999975
No 30
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=7.6e-47 Score=357.55 Aligned_cols=222 Identities=24% Similarity=0.236 Sum_probs=190.8
Q ss_pred hcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCce-eccCCcc
Q psy17727 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE-LKVELED 105 (261)
Q Consensus 27 ~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~-~~~~~~d 105 (261)
+.+||+. .++...|++...+ ...+.+..||++++.+.|+||++++++|.++++++..+. +.+. .....++
T Consensus 2 ~~~~y~~--~~~~~~~s~~~~i-----~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~~~~~~--~~~~~~~~~~~~ 72 (437)
T cd01597 2 LGDLFGT--PAMREIFSDENRV-----QAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLDL--EALAEATARTGH 72 (437)
T ss_pred CccccCC--HHHHHHcCcHHHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCH--HHHHHHHHHhCC
Confidence 3457765 4588889886655 335677788899999999999999999999987752221 1121 1122233
Q ss_pred hhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17727 106 IHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (261)
Q Consensus 106 v~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P 184 (261)
.++++|++|++++| +.|+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++++||||||+|||||
T Consensus 73 ~v~a~e~~l~e~~g~~~g~~lH~grSrnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P 152 (437)
T cd01597 73 PAIPLVKQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALP 152 (437)
T ss_pred CcHHHHHHHHHHcCccccCeeecCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeehhhcCcccee
Confidence 34689999999999 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhhHHHHh
Q psy17727 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPGFTIES 258 (261)
Q Consensus 185 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~ 258 (261)
|||||||++|+++|.|+++||.+++++++.+||||++|+|+++ +++++|+.|||+.+..+ |+++||+++++
T Consensus 153 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGga~Gtg~~~~~~~~~~~~~~a~~LGf~~~~~~---~~~~rd~~~e~ 229 (437)
T cd01597 153 ITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLASLGDQGLAVQEALAAELGLGVPAIP---WHTARDRIAEL 229 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCcHHHHHHHHHHHcCCCCCCCc---cccCcHHHHHH
Confidence 9999999999999999999999999999999999999999887 37999999999987654 78999999998
Q ss_pred cC
Q psy17727 259 GH 260 (261)
Q Consensus 259 ~~ 260 (261)
++
T Consensus 230 ~~ 231 (437)
T cd01597 230 AS 231 (437)
T ss_pred HH
Confidence 75
No 31
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.3e-46 Score=354.61 Aligned_cols=219 Identities=20% Similarity=0.226 Sum_probs=183.4
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhh
Q psy17727 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMN 109 (261)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ 109 (261)
||+. .++...|++.+.+..++ +||.++| +++++.|+||++.++.|.+++.....+...-.-.....+||+ ++
T Consensus 4 ~y~~--~~~~~i~s~~~~~~~~l---~vE~ala--~a~~~~g~ip~~aa~~i~~~~~~~~~d~~~~~~~~~~~~h~v-~a 75 (435)
T PRK07492 4 RYSR--PEMVAIWEPETKFRIWF---EIEAHAC--EAQAELGVIPKEAAETIWEKGKDAEFDVARIDEIEAVTKHDV-IA 75 (435)
T ss_pred ccCc--HHHHHHcCHHHHHHHHH---HHHHHHH--HHHHHcCCCCHHHHHHHHHhCcccCCCHHHHHHHHHHhCCCh-HH
Confidence 4543 45888899988776644 7887776 668999999999999998875321111110000012367888 89
Q ss_pred HHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHH
Q psy17727 110 IESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGH 189 (261)
Q Consensus 110 ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~ 189 (261)
++++|++++|+.|+|||+|+|||||+||+++|++|+++..+.+.|..++++|.++|++|+||+||||||+|||+|||||+
T Consensus 76 ~~~~L~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~ 155 (435)
T PRK07492 76 FLTHLAEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGL 155 (435)
T ss_pred HHHHHHHHhhHhhhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeccCCccceehhHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--Ch---HHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 190 YLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TT---NATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 190 ~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~---~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|+++|+++|.|+++||.+++++++++||||+ + ||.+ ++ +++++.|||+.+..++ ++++||+++++++
T Consensus 156 ~~a~~~~~l~r~~~rL~~~~~~~~~~~lgGA-v-GT~~~~~~~~~~~~a~~LGl~~~~~~~--~v~~RD~~~e~~~ 227 (435)
T PRK07492 156 KLARFYAEFARNRERLVAAREEIATCAISGA-V-GTFANIDPRVEEHVAKKLGLKPEPVST--QVIPRDRHAMFFA 227 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCccc-c-cCCccCChHHHHHHHHHhCCCCCCccc--cccccHHHHHHHH
Confidence 9999999999999999999999999999875 4 6655 65 7899999998754331 4699999999875
No 32
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2e-46 Score=355.52 Aligned_cols=224 Identities=18% Similarity=0.131 Sum_probs=188.9
Q ss_pred hcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcch
Q psy17727 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDI 106 (261)
Q Consensus 27 ~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv 106 (261)
+++||++ .++...|++...+ .+.+.+..||+++|+++|+||++++++|.+++.....+...-.......+||+
T Consensus 6 ~~~~y~~--~~~~~i~s~~~~~-----~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~~~~~~~~~~~dv 78 (451)
T PRK06390 6 IEYRYGR--DQVKYIFDDENRL-----RYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVREIESEIKHDV 78 (451)
T ss_pred cCcccCC--HHHHHHcCHHHHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCc
Confidence 3457765 4588889986644 45677888888999999999999999999998654333221000112248899
Q ss_pred hhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccccc
Q psy17727 107 HMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPIS 186 (261)
Q Consensus 107 ~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T 186 (261)
+++|++|++++|+.++|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||
T Consensus 79 -~~~~~~L~~~~g~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T 157 (451)
T PRK06390 79 -MALVEALSEQCSAGKNYVHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPIT 157 (451)
T ss_pred -HHHHHHHHHHhhhhhhheecCccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhCCCcCeehh
Confidence 8999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCC----Cc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 187 LGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAP----HT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 187 ~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt----~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|||||++|+++|.|+++||.+++++++.+++||++|+|. .+ +++++|+.|||+.+..+ +++++||+++|+++
T Consensus 158 ~G~~~~~~~~~l~r~~~RL~~~~~r~~~~~~~gavGt~a~~g~~~~~~~~~~a~~LGl~~~~~~--~~~~~rD~~~e~~~ 235 (451)
T PRK06390 158 FGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALGKDALDIQNRVMEILGIYSEIGS--TQIVNRDRYIEYLS 235 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhcChhhCCCcHHHHHHHHHHHcCCCCCCCc--cccccchHHHHHHH
Confidence 999999999999999999999999999777766554433 33 67899999999976544 37799999999865
No 33
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-46 Score=346.18 Aligned_cols=216 Identities=20% Similarity=0.246 Sum_probs=189.0
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HHHhhhhCCCceec
Q psy17727 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK-------DIEYDIEHGKVELK 100 (261)
Q Consensus 28 ~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~-------~i~~~~~~~~~~~~ 100 (261)
.+||++ .++...|+..+.+..++ ++|+++ ++++++.|+||++.++.|.+.+. .+.+. ..
T Consensus 2 ~~RY~~--~em~~ifS~~~~~~~~l---~vE~al--a~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~ei-------e~ 67 (438)
T COG0015 2 DGRYSS--PEMRAIFSEEAKLRAWL---KVEAAL--ARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEI-------EA 67 (438)
T ss_pred CcccCc--HHHHHHcCHHHHHHHHH---HHHHHH--HHHHHHhCCCCHHHHHHHHHHhcccccCHHHHHHH-------HH
Confidence 467877 55899999988886644 666666 57789999999999999988853 22221 12
Q ss_pred cCCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccC
Q psy17727 101 VELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHF 179 (261)
Q Consensus 101 ~~~~dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~ 179 (261)
..+||| +++++.|++.|| +.++|||+|+|||||+||++.|++|++++.|.+.|.+++++|.++|.+|++++|+||||+
T Consensus 68 ~t~HdV-~a~v~~l~e~~~~~~~~~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m~GRTHg 146 (438)
T COG0015 68 ETGHDV-KALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHG 146 (438)
T ss_pred HhCCCc-HHHHHHHHHhcCcccccceecccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecccccC
Confidence 368999 899999999999 778999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhh
Q psy17727 180 QFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPG 253 (261)
Q Consensus 180 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD 253 (261)
|||+|||||++++.|++++.|+++||.++.+++.++++||++|+..++ .++++++.|||..++.++ |+.+||
T Consensus 147 q~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~~~~~~ve~~v~e~LGL~~~p~st--q~~~RD 224 (438)
T COG0015 147 QPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALGDLGAEVEERVAEKLGLKPAPIST--QVSPRD 224 (438)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhHhhcCchhHHHHHHHHHHcCCCCCCCCc--ccccch
Confidence 999999999999999999999999999999999999999888666666 358899999999655544 999999
Q ss_pred HHHHhcC
Q psy17727 254 FTIESGH 260 (261)
Q Consensus 254 ~~~e~~~ 260 (261)
+++|+++
T Consensus 225 ~~ae~~~ 231 (438)
T COG0015 225 RIAEFFS 231 (438)
T ss_pred HHHHHHH
Confidence 9999975
No 34
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=6.5e-46 Score=352.10 Aligned_cols=222 Identities=21% Similarity=0.195 Sum_probs=188.1
Q ss_pred hcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHhhhhCCCceeccCCc
Q psy17727 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IEYDIEHGKVELKVELE 104 (261)
Q Consensus 27 ~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~--i~~~~~~~~~~~~~~~~ 104 (261)
+++||++ .++...|++...++. .+.+..||+++|++.|+||++.+++|.+++.+ +..+.. .... ...++
T Consensus 6 ~~~~~~~--~~~~~~~s~~~~~~~-----~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~-~~~~-~~~~~ 76 (449)
T PRK08540 6 IDYRYGT--PEMKRVWSEENKLQK-----MLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERV-KEIE-AEIHH 76 (449)
T ss_pred cCcccCC--HHHHHHcChHHHHHH-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHH-HHHH-HHhCC
Confidence 4567765 458888998776644 44556677799999999999999999999876 432210 1111 12456
Q ss_pred chhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 105 DIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 105 dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
|+ +++|++|++++| +.++|||+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++++|+||||+|+||
T Consensus 77 ~v-~~~e~~L~~~~~~~~~~~vH~g~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A~ 155 (449)
T PRK08540 77 DI-MAVVKALSEVCEGDAGEYVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTHGQHAV 155 (449)
T ss_pred Cc-HHHHHHHHHHhhhhhhcceecCccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhcCCCcCe
Confidence 77 899999999995 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhhHHHH
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPGFTIE 257 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD~~~e 257 (261)
||||||||++|+++|.|+++||.+++++++.+||||++|+|.++ ..+++++.|||+.+..|+ ++++||++++
T Consensus 156 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGt~~a~~~~~~~i~~~~a~~LGl~~~~~~~--~~~~rd~~~e 233 (449)
T PRK08540 156 PTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQMTGAVGTQAAFGEKGIEIQKRVMEILGLKPVLISN--QVIQRDRHAE 233 (449)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHhhheccccccccchhhCCCccHHHHHHHHHHcCCCCCCCcC--CccccHHHHH
Confidence 99999999999999999999999999999999999866655433 347899999999876664 6799999999
Q ss_pred hcC
Q psy17727 258 SGH 260 (261)
Q Consensus 258 ~~~ 260 (261)
+++
T Consensus 234 ~~~ 236 (449)
T PRK08540 234 FMM 236 (449)
T ss_pred HHH
Confidence 875
No 35
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=8e-46 Score=348.98 Aligned_cols=216 Identities=19% Similarity=0.253 Sum_probs=183.2
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhh
Q psy17727 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMN 109 (261)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ 109 (261)
||+. .++...|++.+.+..++ +||+++| +++++.|+||++.++.|.+.+ ++.. ..-.-.....+||| ++
T Consensus 4 ~y~~--~~~~~~fs~~~~~~~~l---~vE~ala--~a~~~~g~ip~~aa~~i~~~~-~~d~--~~i~~~~~~~~h~v-~a 72 (431)
T PRK07380 4 RYTL--PEMGNIWTDTAKFQTWL---DVEIAVC--EAQAELGKIPQEAVEEIKAKA-NFDP--QRILEIEAEVRHDV-IA 72 (431)
T ss_pred ccCc--HHHHHHcCHHHHHHHHH---HHHHHHH--HHHHHcCCCCHHHHHHHHhcc-CCCH--HHHHHHHHHhCCCh-HH
Confidence 6764 45888999988776644 6777665 668999999999999998764 2211 10000012368888 78
Q ss_pred HHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHH
Q psy17727 110 IESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGH 189 (261)
Q Consensus 110 ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~ 189 (261)
+++.|++++|+.++|||+|+|||||+||+++|++|+++..+.+.|..++++|.++|++|+||+|+||||+|||+|||||+
T Consensus 73 ~v~~l~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~ 152 (431)
T PRK07380 73 FLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGF 152 (431)
T ss_pred HHHHHHHHHHHhhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeechhcCccceechHHH
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChH---HHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 190 YLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTN---ATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 190 ~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~---~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|+++|+++|.|+++||.+++++++++|||| |+ ||.+ +++ ++++.|||+.+..+ +++++||+++|+++
T Consensus 153 ~~a~~~~~l~r~~~RL~~~~~~~~~~~l~G-Av-Gt~~~~~~~~~~~~a~~LGl~~~~~~--~~v~~rd~~~e~~~ 224 (431)
T PRK07380 153 KLAGWLAETLRNRERLVRLREDIAVGQISG-AV-GTYANTDPRVEAITCQKLGLKPDTAS--TQVISRDRHAEYVQ 224 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcch-hh-cCcccCChhHHHHHHHHcCCCCCCCC--CCccCcHHHHHHHH
Confidence 999999999999999999999999999965 55 7755 665 89999999977554 26799999999875
No 36
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=3.7e-45 Score=345.75 Aligned_cols=218 Identities=23% Similarity=0.317 Sum_probs=184.9
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hhhhCCCc-ee-ccCCc
Q psy17727 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIE-YDIEHGKV-EL-KVELE 104 (261)
Q Consensus 28 ~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~-~~~~~~~~-~~-~~~~~ 104 (261)
++||+. .++...|++...+ .+.+.+..||+++|+++|+||+++++.|.+++ ++. .+. ..+ .. ...++
T Consensus 2 ~~~y~~--~~~~~ifs~~~~~-----~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~-~~~~~d~--~~l~~~~~~~~~ 71 (435)
T TIGR00928 2 DERYGT--PEMRAIWSEENKF-----KTWLDVEVALLRALAELGVIPAEAVKEIRAKA-NFTDVDL--ARIKEIEAVTRH 71 (435)
T ss_pred CcccCc--HHHHHHhCHHHHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhC-CCCccCH--HHHHHHHHHHCc
Confidence 356764 4588889886644 44566777788999999999999999998872 121 010 001 00 12467
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17727 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (261)
Q Consensus 105 dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P 184 (261)
|+ +++|.+|++++|+.++|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|||||
T Consensus 72 ~v-~~~e~~l~~~~g~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P 150 (435)
T TIGR00928 72 DV-KAVVYALKEKCGAEGEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEP 150 (435)
T ss_pred Ch-HHHHHHHHHHhhhhhhheeecccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHhHHhcCCCCcc
Confidence 88 89999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--Ch------HHHHhhcCCCCCCCCcccccchhhHHH
Q psy17727 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TT------NATAPELGLDSPRGDSLESIWRPGFTI 256 (261)
Q Consensus 185 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~------~~la~~LGl~~~~~n~~~~~~~rD~~~ 256 (261)
||||||+++|+++|.|+++||.+++++++.+|+||++ ||++ ++ +++|+.|||+.|..++ ++++||+++
T Consensus 151 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGa~--Gt~~~~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rD~~~ 226 (435)
T TIGR00928 151 TTLGKKFALWADEMKRQLERLLQAKERIKVGGISGAV--GTHAAAYPLVEEVEERVTEFLGLKPVPIST--QIEPRDRHA 226 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccchh--hhHhhccccHHHHHHHHHHhcCCCCCCCCc--cccccHHHH
Confidence 9999999999999999999999999999999998753 6655 65 8899999999877554 789999999
Q ss_pred HhcC
Q psy17727 257 ESGH 260 (261)
Q Consensus 257 e~~~ 260 (261)
++++
T Consensus 227 e~~~ 230 (435)
T TIGR00928 227 ELLD 230 (435)
T ss_pred HHHH
Confidence 9875
No 37
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=9.1e-45 Score=344.40 Aligned_cols=225 Identities=21% Similarity=0.196 Sum_probs=185.7
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCc
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 104 (261)
.+++++|+.+ ++...|++...+..++ +|+.++| +++++.|+||++.+++|.++|++-..++..-.......++
T Consensus 6 ~~~~~~~~~~--~~~~i~s~~~~i~a~l---~ve~A~A--~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~ 78 (452)
T PRK09053 6 RLTDLYFGSP--AMRAIFSDRATVQRML---DFEAALA--RAEAACGVIPAAAVAPIEAACDAERLDLDALAQAAALAGN 78 (452)
T ss_pred hhhhhhcCCH--HHHHHcCcHHHHHHHH---HHHHHHH--HHHHHcCCCCHHHHHHHHHhccccCCCHHHHHHHHhhcCC
Confidence 3666677664 5888999887775533 6666665 6689999999999999999985410110000000011344
Q ss_pred chhhhHHHHHHHHhC----ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCC
Q psy17727 105 DIHMNIESELIRRIG----NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQ 180 (261)
Q Consensus 105 dv~~~ie~~l~~~~g----~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q 180 (261)
++ .++++++.+.+| +.++|||+|+||||++||+++|++|+++..+.+.|..++++|.++|++|++|+|+||||+|
T Consensus 79 ~~-~~lv~~l~~~~~~~~~~~~~~vH~G~SsnDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~Q 157 (452)
T PRK09053 79 LA-IPLVKQLTAQVAARDAEAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWLQ 157 (452)
T ss_pred ch-HHHHHHHHHHhcccCcchhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeehhccCC
Confidence 44 677888999996 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhhH
Q psy17727 181 FAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPGF 254 (261)
Q Consensus 181 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD~ 254 (261)
||+||||||||++|+++|.|+++||.+++++++.+||||++|+++++ ..+++|+.|||+.|..+ |+++||+
T Consensus 158 ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgavGt~~~~~~~~~~v~~~~a~~LGl~~~~~~---~~~~rD~ 234 (452)
T PRK09053 158 QALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGGAAGTLASLGEQALPVAQALAAELQLALPALP---WHTQRDR 234 (452)
T ss_pred cceechHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhcccccccchHHHHHHHHHHcCCCCCCCC---cccccHH
Confidence 99999999999999999999999999999999999999997765543 35889999999977655 7899999
Q ss_pred HHHhcC
Q psy17727 255 TIESGH 260 (261)
Q Consensus 255 ~~e~~~ 260 (261)
++|+++
T Consensus 235 ~~e~~~ 240 (452)
T PRK09053 235 IAEFAS 240 (452)
T ss_pred HHHHHH
Confidence 999875
No 38
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=4.2e-44 Score=338.26 Aligned_cols=222 Identities=15% Similarity=0.117 Sum_probs=184.6
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhhCCCceeccCCcch
Q psy17727 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTLKDIEYDIEHGKVELKVELEDI 106 (261)
Q Consensus 28 ~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gi-i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv 106 (261)
.|||+++ ++...|++...+..++ +++.++| +++++.|+ ||++.++.|.+++..+ +...-.......+||+
T Consensus 2 ~~ry~~~--~~~~~fs~~~~~~~~l---~~e~ala--~a~~~~g~~ip~~~a~~i~~~~~~~--d~~~i~~~e~~~~hdv 72 (436)
T cd03302 2 ASRYASK--EMVYIFSPRKKFSTWR---KLWLWLA--EAEKELGLDISDEQIEEMKANVENI--DFEIAAAEEKKLRHDV 72 (436)
T ss_pred CCCcCCH--HHHHHcChHHHHHHHH---HHHHHHH--HhhHHhCCCCCHHHHHHHHHhhhcC--CHHHHHHHHHHhCcCc
Confidence 4788764 5888999988776643 6776665 56799999 9999999998876221 1111001112368899
Q ss_pred hhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccccc
Q psy17727 107 HMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPIS 186 (261)
Q Consensus 107 ~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T 186 (261)
.+++++|++++|+.++|||+|+||||++||+++|++|+++..+.+.|..++++|.++|++|+||+||||||+|||+|||
T Consensus 73 -~a~~~~l~~~~~~~~~~vH~G~TS~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~T 151 (436)
T cd03302 73 -MAHVHAFGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTT 151 (436)
T ss_pred -hHHHHHHHHHhHhccCeeeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCccccch
Confidence 6677789999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCC----Cc--Ch-------HHHHhhcCCCCCCCCcccccchhh
Q psy17727 187 LGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAP----HT--TT-------NATAPELGLDSPRGDSLESIWRPG 253 (261)
Q Consensus 187 ~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt----~~--~~-------~~la~~LGl~~~~~n~~~~~~~rD 253 (261)
||||+++|+++|.|+++||.+++++++.+++||++|+++ ++ ++ +++++.|||..+. +..+++++||
T Consensus 152 fG~~~a~~~~~L~r~~~RL~~~~~~~~~~~~~GavGt~a~~~~~~~~dr~~~~~v~~~~a~~LGl~~~~-~~~~~v~~rD 230 (436)
T cd03302 152 VGKRACLWIQDLLMDLRNLERLRDDLRFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVY-PVTGQTYSRK 230 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcChhhhhHHHHhcCCchHHHHHHHHHHHHHHcCCCCCC-CchhhhhccH
Confidence 999999999999999999999999999999988766543 23 33 5899999999764 3334679999
Q ss_pred HHHHhcC
Q psy17727 254 FTIESGH 260 (261)
Q Consensus 254 ~~~e~~~ 260 (261)
+++|+++
T Consensus 231 ~~~e~~~ 237 (436)
T cd03302 231 VDIDVLN 237 (436)
T ss_pred HHHHHHH
Confidence 9999875
No 39
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=9e-41 Score=316.32 Aligned_cols=223 Identities=17% Similarity=0.139 Sum_probs=174.8
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCC---CCHHHHHH---HHHHHHHHHh-hhhCCCce
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI---IDEQDKEL---IVKTLKDIEY-DIEHGKVE 98 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gi---i~~~~a~~---I~~al~~i~~-~~~~~~~~ 98 (261)
.|++||+..+.++...|+....+ ++.+.+..|+++++++.|+ ||+..++. |.+.+.++.. ++..-...
T Consensus 11 p~~~ry~~~~~e~~~~~s~~~~~-----~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~~d~~~i~~~ 85 (456)
T PRK09285 11 PLDGRYASKTAALRPIFSEFGLI-----RYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDAARIKEI 85 (456)
T ss_pred CCccccCCCCHHHHHHhCHHHHH-----HHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 57889988556688889875543 5566777777899999998 77666666 7666532210 11100000
Q ss_pred eccCCcchhhhHHHHHHHHhC------ccCCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCc
Q psy17727 99 LKVELEDIHMNIESELIRRIG------NVGRKLHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLAQLHKHH 171 (261)
Q Consensus 99 ~~~~~~dv~~~ie~~l~~~~g------~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t 171 (261)
.+..+||+ ++++.+|++++| +.++|||+|+|||||+||+++|++|+++.. |.+.|..++++|.++|++|++|
T Consensus 86 e~~~~hdv-~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~~t 164 (456)
T PRK09285 86 ERTTNHDV-KAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHEYADV 164 (456)
T ss_pred HHHhCCCh-HHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 12356888 899999999997 367999999999999999999999999998 9999999999999999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCC-C-----C---c--ChHHHHhhcCCCC
Q psy17727 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGA-P-----H---T--TTNATAPELGLDS 240 (261)
Q Consensus 172 ~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~G-t-----~---~--~~~~la~~LGl~~ 240 (261)
+|+||||+|||+|||||+|+++|+++|.|+++||.++ ...+++||++++- + + + ....+++.|||..
T Consensus 165 ~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~---~~~g~~~GAvGt~~a~~~~~~~~~~~~v~~~~~~~LGL~~ 241 (456)
T PRK09285 165 PMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEAV---EILGKINGAVGNYNAHLAAYPEVDWHAFSREFVESLGLTW 241 (456)
T ss_pred eeeceecCCCCeeehHHHHHHHHHHHHHHHHHHHHHH---HHhhhcccccccHHHHhhhcCCccHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999998 4567787655432 1 1 1 1234556999985
Q ss_pred CCCCcccc-cchhhHHHHhcC
Q psy17727 241 PRGDSLES-IWRPGFTIESGH 260 (261)
Q Consensus 241 ~~~n~~~~-~~~rD~~~e~~~ 260 (261)
+ +++| +++||+++|+++
T Consensus 242 ~---~~~~~v~~rD~~~e~~~ 259 (456)
T PRK09285 242 N---PYTTQIEPHDYIAELFD 259 (456)
T ss_pred C---CCccchhccHHHHHHHH
Confidence 4 3556 699999999875
No 40
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=6.3e-41 Score=314.49 Aligned_cols=209 Identities=17% Similarity=0.147 Sum_probs=167.7
Q ss_pred HhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHH-hhhhCCCceeccCCcchhhhHHH
Q psy17727 40 QQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDE------QDKELIVKTLKDIE-YDIEHGKVELKVELEDIHMNIES 112 (261)
Q Consensus 40 ~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~------~~a~~I~~al~~i~-~~~~~~~~~~~~~~~dv~~~ie~ 112 (261)
..|++.+.+..++ +||++++ +++++.|+||+ +.++.|.+++..+. .++..-.-.....+||+ +++++
T Consensus 3 ~~~s~~~~~~~~l---~vE~ala--~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~~~~~~hdv-~al~~ 76 (425)
T cd01598 3 PYFSEYALIKYRV---QVEVEWL--IALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNHDV-KAVEY 76 (425)
T ss_pred HHhCHHHHHHHHH---HHHHHHH--HHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHHHHHHCCCc-HHHHH
Confidence 4577666665544 7777776 66899999999 99999988875421 11111000112367888 89999
Q ss_pred HHHHHhC------ccCCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccc
Q psy17727 113 ELIRRIG------NVGRKLHTGRSRNDQVVLDLRLFTRRNI-KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPI 185 (261)
Q Consensus 113 ~l~~~~g------~~g~~iH~G~SsnDi~~Ta~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~ 185 (261)
+|++++| +.++|||+|+|||||+||+++|++|+++ ..+.+.|..++++|.++|++|+||+|+||||+|||+||
T Consensus 77 ~l~~~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~Q~A~P~ 156 (425)
T cd01598 77 FLKEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPT 156 (425)
T ss_pred HHHHHhcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccCeeh
Confidence 9999997 3567999999999999999999999999 56789999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCC---------c--ChHHHHhhcCCCCCCCCcccc-cchhh
Q psy17727 186 SLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPH---------T--TTNATAPELGLDSPRGDSLES-IWRPG 253 (261)
Q Consensus 186 T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~---------~--~~~~la~~LGl~~~~~n~~~~-~~~rD 253 (261)
|||+|+++|+++|.|+++||.++. ..++|||++|+.+. + ..+.+++.|||..+.. +| +++||
T Consensus 157 TfG~~~a~w~~~L~r~~~RL~~~~---~~g~~gGavGt~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~~---~~~v~~rD 230 (425)
T cd01598 157 TLGKELAVFVYRLERQYKQLKQIE---ILGKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPY---TTQIEPHD 230 (425)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhheeeCchhhhhhhhhccCcccHHHHHHHHHHHhCcCCCCc---ccchhccH
Confidence 999999999999999999999983 45668876643211 1 3467999999986533 36 69999
Q ss_pred HHHHhcC
Q psy17727 254 FTIESGH 260 (261)
Q Consensus 254 ~~~e~~~ 260 (261)
+++|+++
T Consensus 231 ~~~e~~~ 237 (425)
T cd01598 231 YIAELFD 237 (425)
T ss_pred HHHHHHH
Confidence 9999875
No 41
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=1.8e-39 Score=307.27 Aligned_cols=224 Identities=16% Similarity=0.122 Sum_probs=176.2
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCC---CH---HHHHHHHHHHHHHHh-hhhCCCce
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNII---DE---QDKELIVKTLKDIEY-DIEHGKVE 98 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii---~~---~~a~~I~~al~~i~~-~~~~~~~~ 98 (261)
.+++||+..+.++...|++...+..++ ++|++++ +++++.|+| |+ +.++.|.+.+..+.. +...-...
T Consensus 14 pl~~ry~~~~~e~~~ifSd~a~~~~~l---~vE~ala--~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~~~~ 88 (458)
T PLN02848 14 PLDGRYWSKVKDLRPIFSEFGLIRYRV---LVEVKWL--LKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEVKKI 88 (458)
T ss_pred CchhhhcCCcHHHHHHcCHHHHHHHHH---HHHHHHH--HHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHhhHHHHHHH
Confidence 466788886677999999987776644 6666655 778999997 66 999999887733210 11100000
Q ss_pred eccCCcchhhhHHHHHHHHhC---c---cCCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCc
Q psy17727 99 LKVELEDIHMNIESELIRRIG---N---VGRKLHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLAQLHKHH 171 (261)
Q Consensus 99 ~~~~~~dv~~~ie~~l~~~~g---~---~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t 171 (261)
....+||+ ++++.++++++| + .++|||+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|+++
T Consensus 89 e~~t~hdv-~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~dt 167 (458)
T PLN02848 89 ERVTNHDV-KAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYV 167 (458)
T ss_pred HHHhCCCc-HHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 12368888 889999999996 2 45899999999999999999999999998 9999999999999999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCC----c---Ch----HHHHhhcCCCC
Q psy17727 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPH----T---TT----NATAPELGLDS 240 (261)
Q Consensus 172 ~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~----~---~~----~~la~~LGl~~ 240 (261)
+|+||||+|+|+|||||+|+++|+++|.|+++||.++. ..+++||++|+.++ + ++ +.+++.|||..
T Consensus 168 ~m~GRTH~Q~A~PiTfG~~~a~w~~~L~r~~~rL~~~~---l~g~~~GAvGt~aa~~~~~~~~d~~~v~~~la~~LGL~~ 244 (458)
T PLN02848 168 PMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQLSEVK---IKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSLGLTF 244 (458)
T ss_pred eeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHH---hccEeecccchhhhhhhccCCCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999873 35778776543322 2 33 34666899984
Q ss_pred CCCCcccccchhhHHHHhcC
Q psy17727 241 PRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 241 ~~~n~~~~~~~rD~~~e~~~ 260 (261)
.. ..+++++||+++|+++
T Consensus 245 ~~--~~~~v~~rD~~~e~~~ 262 (458)
T PLN02848 245 NP--YVTQIEPHDYMAELFN 262 (458)
T ss_pred CC--chhhHhccHHHHHHHH
Confidence 22 2236799999999875
No 42
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-39 Score=288.98 Aligned_cols=248 Identities=22% Similarity=0.254 Sum_probs=216.8
Q ss_pred ccccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy17727 2 MLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDK 78 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~--~~l~~~~i~~~lA~~~~l~~~Gii~~~~a 78 (261)
-.|||+|-- |+-+.| . ..|||. ++.+..++|..+. ..+ ..+.+..+.+-.|.+.+..++|.||++.+
T Consensus 3 ~~R~E~D~l-Ge~~ip---~--evYyGI----~TlRA~eNF~Is~~~~~~~p~~i~a~~~VKKAaAlaN~elg~l~~~~~ 72 (471)
T COG1027 3 DMRIERDLL-GEREIP---A--EVYYGI----HTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIA 72 (471)
T ss_pred cchhhhhhc-ccccCc---c--hhhhhh----HHHHHHhcCCCcCCcccccHHHHHHHHHHHHHHHHhhhhhCCCCHHHH
Confidence 368889887 888877 3 579999 9999999999876 222 22223334444444445569999999999
Q ss_pred HHHHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHHh----C-ccCCc--cc------cCCChhhHHHHHHHH
Q psy17727 79 ELIVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NVGRK--LH------TGRSRNDQVVLDLRL 141 (261)
Q Consensus 79 ~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~~----g-~~g~~--iH------~G~SsnDi~~Ta~~L 141 (261)
++|.+||++|..+..+++|++++ .|+++|||.++++++++ | +.|.| +| +++|+||+.+|++++
T Consensus 73 ~aIv~ACDeil~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE~lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ri 152 (471)
T COG1027 73 DAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRI 152 (471)
T ss_pred HHHHHHHHHHHcCccccccceeccccCCCccccccHHHHHHHHHHHHhcCCCCceeeeCCccccchhhcccccchhHHHH
Confidence 99999999999988889999987 89999999999999875 6 56665 44 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q psy17727 142 FTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221 (261)
Q Consensus 142 ~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a 221 (261)
.+...+..|.+.+..|++++..++++|++++++||||+|+|+|+|+|+.|.+|+..|.||++||.++.+++..+.|||+|
T Consensus 153 a~~~~l~~L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTA 232 (471)
T COG1027 153 AVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTA 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcChhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc--Ch-------HHHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 222 LGAPHT--TT-------NATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 222 ~~Gt~~--~~-------~~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+ ||++ ++ +.+++..|++ .+..|.++++++.|.++++..
T Consensus 233 i-GTGiNa~~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg 280 (471)
T COG1027 233 I-GTGINAPKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSG 280 (471)
T ss_pred e-ccCcCCChhHHHHHHHHHHHHhCCCCccchhHHHHHhcccHHHHHHH
Confidence 9 9988 44 5599999999 888999999999999998754
No 43
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=1.6e-38 Score=286.90 Aligned_cols=245 Identities=20% Similarity=0.313 Sum_probs=214.8
Q ss_pred CccccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHH-----HHHhcCCCCH
Q psy17727 1 MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVT-----MLGERNIIDE 75 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~-----~l~~~Gii~~ 75 (261)
|..|||.|.- |+.+.| . .+|||. ++++..++|..+.. .+ |..++.+++.+| ...++|.+++
T Consensus 1 ~~~R~E~Dt~-G~i~Vp---a--d~~wgA----QTqRs~~nF~ig~~---~m-p~~~I~Al~~lKkaaA~~N~~LG~L~~ 66 (462)
T COG0114 1 MTYRIEHDTM-GEVEVP---A--DALWGA----QTQRSLENFPIGGE---KM-PREIIRALGLLKKAAAQVNADLGLLDP 66 (462)
T ss_pred CCcccccccC-cccccc---H--HHHHHH----HHHHHHhcCCcccc---cC-cHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 5678999877 999888 4 579999 99999999998763 12 445666665555 4468999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHHh----C-ccC--Cccc------cCCChhhHHHHH
Q psy17727 76 QDKELIVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NVG--RKLH------TGRSRNDQVVLD 138 (261)
Q Consensus 76 ~~a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~~----g-~~g--~~iH------~G~SsnDi~~Ta 138 (261)
+.+++|.+++++|..+...+.||++. +++..|||+|++|++++ | +.| ..|| +|+||||+++||
T Consensus 67 ~~a~aI~~Aadev~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTA 146 (462)
T COG0114 67 EKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTA 146 (462)
T ss_pred HHHHHHHHHHHHHHcCcccCCCCeEEEecCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchhhH
Confidence 99999999999999998889999876 89999999999999886 3 333 2355 999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy17727 139 LRLFTRRNIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPL 217 (261)
Q Consensus 139 ~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~l 217 (261)
+++....++. .|++.|..|+++|.+++++|.+++++||||+|+|.|+|||++|++|...|.+..+|++...+.+...++
T Consensus 147 mhIAa~~~v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l~eLAi 226 (462)
T COG0114 147 MHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAI 226 (462)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999986 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCc--Ch-------HHHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 218 GSAALGAPHT--TT-------NATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 218 Gg~a~~Gt~~--~~-------~~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||+|+ ||++ .+ +.+++..|++ .+..|.|.+.+++|.++++..
T Consensus 227 GGTAV-GTGlNa~p~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~G 278 (462)
T COG0114 227 GGTAV-GTGLNAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASG 278 (462)
T ss_pred CCccc-ccCcCCCccHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhH
Confidence 99999 9988 22 5689999998 678899999999999988653
No 44
>KOG1317|consensus
Probab=99.96 E-value=3.1e-29 Score=221.46 Aligned_cols=240 Identities=20% Similarity=0.240 Sum_probs=198.7
Q ss_pred ccCCCCCch-hhhhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHH-----HHHHHHhcCCCCHHHHHHHHHHHH
Q psy17727 13 EQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIA-----HVTMLGERNIIDEQDKELIVKTLK 86 (261)
Q Consensus 13 ~~~~~~~~~-~~~~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA-----~~~~l~~~Gii~~~~a~~I~~al~ 86 (261)
|.|+|+..+ .+.+|||. ++.+...+|.....-.+ + |..++.+.- .++...+.| +++..+++|.++++
T Consensus 31 E~DtfGe~~VP~DkyyGA----QT~Rs~~NF~IGg~~ER-M-P~pii~AfGiLKkaaA~vN~~~G-LDpkis~Ai~~Aad 103 (487)
T KOG1317|consen 31 ERDTFGEIEVPADKYYGA----QTQRSLQNFKIGGERER-M-PEPIIQAFGILKKAAAEVNQEYG-LDPKISKAISQAAD 103 (487)
T ss_pred hccccCcccccchhhhhH----HHHHHhhccccCCcccc-C-chHHHHHHHHHHHHHHHHhHhhC-CChHHHHHHHHHHH
Confidence 445555554 35689998 99999999987543322 2 333443332 233345788 78889999999999
Q ss_pred HHHhhhhCCCceecc----CCcchhhhHHHHHHHHh----C-ccCC-ccc------cCCChhhHHHHHHHHHHHHHHH-H
Q psy17727 87 DIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NVGR-KLH------TGRSRNDQVVLDLRLFTRRNIK-A 149 (261)
Q Consensus 87 ~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~~----g-~~g~-~iH------~G~SsnDi~~Ta~~L~lr~~l~-~ 149 (261)
++..+.-.+.||+.. +++..+|+.+++|.+++ | +.|. .+| ..+||||..+|++++..--.+. .
T Consensus 104 eV~~GKL~dhFPLvvwQTGSGTQsNMN~NEVIsNrAieilGg~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~ei~~~ 183 (487)
T KOG1317|consen 104 EVASGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEILGGKLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATEINSR 183 (487)
T ss_pred HHhcCcccccCceeEEecCCCccccCcHHHHHHHHHHHHhcccccCcccCCccccccccccCCccchHHHHHHHHHHHHh
Confidence 999886667787644 78999999999999875 4 4442 355 8999999999999999877775 8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--
Q psy17727 150 LIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT-- 227 (261)
Q Consensus 150 l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~-- 227 (261)
|++.|..|.++|..++++|+|++++||||.|+|+|.|+|+.|++|.+.+...++|+..+..|+.....||+++ ||++
T Consensus 184 L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ngl~Rv~~~lpr~y~LA~GGTAV-GTGLNT 262 (487)
T KOG1317|consen 184 LIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAV-GTGLNT 262 (487)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhHHHHHhcCCccc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 9987
Q ss_pred -------ChHHHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 228 -------TTNATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 228 -------~~~~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
...+++++.||+ ...+|-+.+...||..+|+..
T Consensus 263 r~GFaeK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~G 303 (487)
T KOG1317|consen 263 RKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSG 303 (487)
T ss_pred cccHHHHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcc
Confidence 236799999999 667899999999999999864
No 45
>KOG2700|consensus
Probab=99.91 E-value=6.2e-25 Score=201.09 Aligned_cols=203 Identities=17% Similarity=0.067 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhCccCCccccCCChhhHH
Q psy17727 56 DIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQV 135 (261)
Q Consensus 56 ~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~ 135 (261)
.+...+|.+.....++.|+++.++.++..++--..++..-.-.-..-.+|| |+++..+.+.|..+.+++|+|+|++++.
T Consensus 35 ~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d~~~l~~ee~r~~hdV-mahvh~~~~~cp~aagiihlgatsc~vt 113 (481)
T KOG2700|consen 35 RLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTALSPEEGRYRHDV-MAHVHSFGELCPIAAGIIHLGATSCFVT 113 (481)
T ss_pred HHHHhhhhhhhcCCcccchHHHHHHHHhhccccccchhhcChhhhhhcccH-HHHHHHHHhhcchhcceEEeeeeeeeec
Confidence 444556555544556669999999988865432222221111111246888 9999999999987777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17727 136 VLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVN 215 (261)
Q Consensus 136 ~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~ 215 (261)
|.+....+|++.+.+.+.|...|+.|..++.+|++++|.||||+|+|+|+|||++.+.|.++|.+++++|..++.++...
T Consensus 114 dnadli~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~ 193 (481)
T KOG2700|consen 114 DNADLIELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFR 193 (481)
T ss_pred CCccceechhHHHHHHHHHHHHHHHHHHHHHHhccceecccccCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCc------Ch-------HHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 216 PLGSAALGAPHT------TT-------NATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 216 ~lGg~a~~Gt~~------~~-------~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
.++|+.|+-.++ +. +.+++.+||.++..-+ .|+.+|+..++.++
T Consensus 194 ~~kga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~ 250 (481)
T KOG2700|consen 194 GLKGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVA 250 (481)
T ss_pred ccccchhhHHHHHHhhcccHHHHHHHHHHHHHHhCCCcccccc-CCcCCchhHHHHHH
Confidence 998876433344 22 3578999998765543 58999999888753
No 46
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.86 E-value=5.9e-21 Score=165.68 Aligned_cols=99 Identities=41% Similarity=0.562 Sum_probs=90.7
Q ss_pred HHHHHHHHhC-ccCCcc-----ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 110 IESELIRRIG-NVGRKL-----HTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 110 ie~~l~~~~g-~~g~~i-----H~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
++.+|.+.+| ..+++. |+|+||||+++|++++++|+++..+.+.+..+..++..++++|++++||||||+|+|+
T Consensus 16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~th~q~A~ 95 (231)
T cd01594 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQ 95 (231)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeecccccccCc
Confidence 5566666666 234444 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDC 208 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~ 208 (261)
|+|||+++.+|.+.|.|+++||.++
T Consensus 96 p~t~g~~~~~~~~~l~~~~~rL~~~ 120 (231)
T cd01594 96 PVTLGYELRAWAQVLGRDLERLEEA 120 (231)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987
No 47
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=74.00 E-value=15 Score=25.08 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Q psy17727 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDI 92 (261)
Q Consensus 57 i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~ 92 (261)
++.-.+.+....+.|.|+++.|+.|.+.++.-....
T Consensus 17 ~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 17 LELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444455566778999999999999999988765543
No 48
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=62.97 E-value=19 Score=21.11 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17727 60 SIAHVTMLGERNIIDEQDKELIVKTL 85 (261)
Q Consensus 60 ~lA~~~~l~~~Gii~~~~a~~I~~al 85 (261)
.+...+.+.+.|+|++++.....+.+
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35556788999999999998876554
No 49
>KOG4797|consensus
Probab=53.60 E-value=51 Score=25.38 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17727 132 NDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLH 168 (261)
Q Consensus 132 nDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~ 168 (261)
-|.+-|-++..+|+..+.|.+.+.+|.+....+-+++
T Consensus 54 MDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 54 MDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999988888776
No 50
>KOG2700|consensus
Probab=45.93 E-value=54 Score=31.51 Aligned_cols=89 Identities=12% Similarity=-0.092 Sum_probs=56.6
Q ss_pred hhHHHHHHHHhC---cc---CCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccccccCC
Q psy17727 108 MNIESELIRRIG---NV---GRKLHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQ 180 (261)
Q Consensus 108 ~~ie~~l~~~~g---~~---g~~iH~G~SsnDi~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q 180 (261)
..++.+.++.|- +. =..+|..+++-|+.--.-.+-+..++.. +...-+++++...-.+++..=.+|.-+| ||
T Consensus 160 A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~T-GQ 238 (481)
T KOG2700|consen 160 AQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVT-GQ 238 (481)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHhhcccHHHHHHHHHHHHHHhCCCcccccc-CC
Confidence 455555555542 11 1357777777777665555666666654 3333333333333333777889999999 99
Q ss_pred ccccccHHHHHHHHHHH
Q psy17727 181 FAQPISLGHYLLAYASM 197 (261)
Q Consensus 181 ~A~P~T~G~~~~~~~~~ 197 (261)
.+.|.+.+..++..+.-
T Consensus 239 t~sr~~~~~~~~~la~l 255 (481)
T KOG2700|consen 239 TYSRKTDAEEVAPLASL 255 (481)
T ss_pred cCCchhHHHHHHHHHHH
Confidence 99999999988766543
No 51
>PF03533 SPO11_like: SPO11 homologue; InterPro: IPR004084 Spo11 is a meiosis-specific protein in yeast that covalently binds to DNA double-strand breaks (DSBs) during the early stages of meiosis []. These DSBs initiate homologous recombination, which is required for chromosomal segregation and generation of genetic diversity during meiosis. Mouse and human homologues of Spo11 have been cloned and characterised. The proteins are 82% identical and share ~25% identity with other family members. Mouse Spo11 has been localised to chromosome 2H4, and human SPO11 to chromosome 20q13.2-q13.3, a region amplified in some breast and ovarian tumours []. Similarity between SPO11 and archaebacterial TOP6A proteins points to evolutionary specialisation of a DNA-cleavage function for meiotic recombination []. Note that the yeast SPO11 protein shares far less similarity to other SPO11 proteins than the human and mouse homologues do to each other.; GO: 0003677 DNA binding, 0007131 reciprocal meiotic recombination
Probab=33.92 E-value=93 Score=19.63 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q psy17727 192 LAYASMFRRDIERLLDCRRRVNVNP 216 (261)
Q Consensus 192 ~~~~~~l~r~~~rL~~~~~~~~~~~ 216 (261)
++|.+.|.||+..|.....+--.-+
T Consensus 9 ASFf~vLdrHRasLlaal~~gggE~ 33 (43)
T PF03533_consen 9 ASFFEVLDRHRASLLAALRRGGGEP 33 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHccCCCC
Confidence 5789999999999998877543333
No 52
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=33.84 E-value=1.6e+02 Score=20.36 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17727 37 EFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKEL 80 (261)
Q Consensus 37 ~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~ 80 (261)
..+..|..-+-+..+++ +++-.--.++.+.+.|+|+++....
T Consensus 9 QLLK~fG~~IY~gdr~~--DielM~~El~~Ly~~~lidk~~y~~ 50 (62)
T PF06014_consen 9 QLLKKFGIIIYVGDRLW--DIELMEIELKELYKSGLIDKKEYLT 50 (62)
T ss_dssp HHHHTTS-----S-HHH--HHHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred HHHHHCCEEEEeCChHH--HHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 36667766554444543 6776666778899999999986554
No 53
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=30.80 E-value=3.7e+02 Score=23.61 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17727 189 HYLLAYASMFRRDIERLLDCR 209 (261)
Q Consensus 189 ~~~~~~~~~l~r~~~rL~~~~ 209 (261)
.+++.|...|.+.+..|..+.
T Consensus 106 ~q~~~y~~vL~~cl~~L~~li 126 (238)
T PF14735_consen 106 RQFATYYQVLLQCLQLLQKLI 126 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 54
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=29.50 E-value=1.8e+02 Score=25.51 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=40.9
Q ss_pred HHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy17727 166 QLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPL 217 (261)
Q Consensus 166 ~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~l 217 (261)
|+.-++...=|| +..-.||..|..|..++..+.+..+++.+........+-
T Consensus 44 E~~lg~~Lf~R~-~r~~~lT~~G~~l~~~a~~ll~~~~~~~~~~~~~~~~~~ 94 (305)
T CHL00180 44 EKQLNIPLFDRS-KNKASLTEAGELLLRYGNRILALCEETCRALEDLKNLQR 94 (305)
T ss_pred HHHhCCEEEEec-CCCceECHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 345577777787 456999999999999999999999999988877654443
No 55
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=29.30 E-value=2.2e+02 Score=21.22 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHhcCcccccccc----CCccccccHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCC
Q psy17727 166 QLHKHHIMPGFTH----FQFAQPISLGHYLLAYASMFRRDIERLLDCRR-RVNVNPL 217 (261)
Q Consensus 166 ~~~~~t~~~grTH----~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~-~~~~~~l 217 (261)
++.-+.+..-|+. +....||..|..+...+..+....+++.+... .+.+.||
T Consensus 41 E~~lg~~Lf~R~~~g~~~~g~~lT~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (99)
T TIGR00637 41 NNLSGEPLVERATGGKGGGGAVLTEYGQRLIQLYDLLERILEKAFSVLEDEVVVKPL 97 (99)
T ss_pred HHHhCCCeEEecCCCCCCCCeeECHHHHHHHHHHHHHHHHHHHHHHHhhceeeeccC
Confidence 3445666666663 57899999999999989988888888877643 4455554
No 56
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=24.95 E-value=2.9e+02 Score=24.47 Aligned_cols=47 Identities=13% Similarity=-0.077 Sum_probs=37.9
Q ss_pred HhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17727 167 LHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213 (261)
Q Consensus 167 ~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 213 (261)
+.-++...=||...--+||..|+.|..++..+....+++.+......
T Consensus 42 ~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~~ 88 (309)
T PRK12683 42 DELGVEIFIRRGKRLTGLTEPGKELLQIVERMLLDAENLRRLAEQFA 88 (309)
T ss_pred HHhCCeeEeeCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777788655557999999999999999999999987776543
No 57
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.55 E-value=20 Score=24.37 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17727 133 DQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLH 168 (261)
Q Consensus 133 Di~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~ 168 (261)
|.|-|-+...+|+..+.|.+.+.+|.+....+..++
T Consensus 2 dLVKtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 2 DLVKTHLMYAVREEVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp -SCCCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788889999999999999998888887776
No 58
>PF07408 DUF1507: Protein of unknown function (DUF1507); InterPro: IPR009983 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; however they form alpha helical bundles and are thought to be involved in control of cell shape [].; PDB: 2ODM_B 2GBO_B.
Probab=20.66 E-value=2.4e+02 Score=20.99 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=16.3
Q ss_pred HhcCCCCHHHHHHHHHHHHH
Q psy17727 68 GERNIIDEQDKELIVKTLKD 87 (261)
Q Consensus 68 ~~~Gii~~~~a~~I~~al~~ 87 (261)
.+.|+|+.++.+.|...++.
T Consensus 59 Vrlgli~~~~Gk~ll~~LE~ 78 (90)
T PF07408_consen 59 VRLGLISEEEGKQLLSELER 78 (90)
T ss_dssp HHTTSS-HHHHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHH
Confidence 68999999999999877754
No 59
>PRK12682 transcriptional regulator CysB-like protein; Reviewed
Probab=20.34 E-value=3.8e+02 Score=23.49 Aligned_cols=49 Identities=6% Similarity=-0.090 Sum_probs=38.9
Q ss_pred HHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17727 166 QLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214 (261)
Q Consensus 166 ~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~ 214 (261)
|+.-++...=|+..+-..||..|..|...+..+.++.+++.........
T Consensus 41 E~~lg~~LF~R~~~~~~~lT~~G~~l~~~~~~~l~~~~~~~~~~~~~~~ 89 (309)
T PRK12682 41 EEELGIEIFIRHGKRLKGLTEPGKAVLDVIERILREVGNIKRIGDDFSN 89 (309)
T ss_pred HHHhCCeeEEECCCCcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777777877666689999999999999999999998877655443
Done!