Query psy17727
Match_columns 261
No_of_seqs 189 out of 1397
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:26:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 100.0 3.1E-58 1.1E-62 435.7 20.1 236 25-260 2-240 (457)
2 2e9f_A Argininosuccinate lyase 100.0 4.2E-58 1.4E-62 435.3 17.6 236 25-260 4-243 (462)
3 1k7w_A Delta 2 crystallin; eye 100.0 1.8E-57 6.3E-62 431.5 19.6 237 24-260 8-246 (468)
4 1vdk_A Fumarase C, fumarate hy 100.0 2.1E-54 7.1E-59 410.2 18.9 249 1-260 1-279 (466)
5 1fur_A Fumarase C, FUMC; hydro 100.0 2.5E-54 8.4E-59 409.6 18.4 247 3-260 4-279 (467)
6 1jsw_A L-aspartase, L-aspartat 100.0 1.3E-53 4.4E-58 405.9 20.2 247 3-260 5-282 (478)
7 1yfm_A Fumarase, YFUM; lyase, 100.0 3.8E-53 1.3E-57 402.5 16.6 247 3-260 28-304 (488)
8 4adm_A Fumarase C, fumarate hy 100.0 2.3E-52 8E-57 397.2 17.7 245 3-260 32-301 (495)
9 3r6q_A Aspartase; aspartate am 100.0 5.5E-52 1.9E-56 393.0 18.8 248 2-260 4-279 (468)
10 3ocf_A Fumarate lyase:delta cr 100.0 2E-51 7E-56 389.2 18.2 248 2-260 22-299 (478)
11 3gtd_A Fumarase C, fumarate hy 100.0 7.2E-50 2.5E-54 378.1 17.3 247 3-260 25-300 (482)
12 3e04_A Fumarase, fumarate hydr 100.0 5.6E-50 1.9E-54 379.2 15.2 246 3-260 30-306 (490)
13 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 5.9E-49 2E-53 372.2 16.8 225 25-260 6-242 (454)
14 3c8t_A Fumarate lyase; structu 100.0 2.1E-48 7.3E-53 368.0 17.6 223 25-260 6-236 (451)
15 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 2.7E-48 9.2E-53 357.4 15.2 224 25-260 9-239 (359)
16 4hgv_A Fumarase C, fumarate hy 100.0 7.8E-48 2.7E-52 366.6 16.6 247 3-260 36-311 (495)
17 1c3c_A Protein (adenylosuccina 100.0 2.9E-47 1E-51 358.3 18.9 214 30-260 3-223 (429)
18 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 2.5E-47 8.6E-52 360.7 14.9 221 30-260 8-238 (450)
19 2pfm_A Adenylosuccinate lyase; 100.0 1.1E-46 3.7E-51 355.6 19.0 215 29-260 12-235 (444)
20 1dof_A Adenylosuccinate lyase; 100.0 2.1E-46 7.3E-51 349.7 18.7 214 26-260 5-228 (403)
21 4eei_A Adenylosuccinate lyase; 100.0 8.5E-46 2.9E-50 348.6 18.8 218 29-260 3-224 (438)
22 1yis_A Adenylosuccinate lyase; 100.0 1.4E-45 4.8E-50 351.0 14.2 223 26-260 10-249 (478)
23 2qga_B Adenylosuccinate lyase; 100.0 6E-46 2.1E-50 352.4 8.0 221 26-260 10-259 (465)
24 2j91_A Adenylosuccinate lyase; 100.0 9.9E-45 3.4E-49 346.6 13.6 222 26-260 38-275 (503)
25 3bhg_A Adenylosuccinate lyase; 100.0 1.5E-44 5.2E-49 342.2 12.3 221 25-260 13-262 (459)
26 2ptr_A Adenylosuccinate lyase; 100.0 1.2E-43 4E-48 336.4 12.7 222 26-260 11-259 (462)
27 3dcf_A Transcriptional regulat 36.6 1.4E+02 0.0047 22.7 9.2 63 112-174 55-128 (218)
28 3him_A Probable transcriptiona 33.6 1.5E+02 0.0052 22.3 11.5 87 76-174 16-113 (211)
29 3nxc_A HTH-type protein SLMA; 30.5 1.7E+02 0.006 22.0 8.4 61 112-172 49-120 (212)
30 1fgl_B HIV-1 GAG protein; cycl 30.4 11 0.00039 20.5 0.1 15 175-189 1-15 (26)
31 2nn4_A Hypothetical protein YQ 29.0 1.2E+02 0.0041 20.6 5.1 43 37-81 10-52 (72)
32 1l6n_A GAG polyprotein; matrix 28.8 25 0.00085 30.6 2.0 53 124-188 174-226 (289)
33 3pas_A TETR family transcripti 27.7 1.8E+02 0.0063 21.4 7.0 60 112-171 32-102 (195)
34 2wlv_A GAG polyprotein, HIV-2 27.4 35 0.0012 26.5 2.4 52 125-189 42-93 (144)
35 2rek_A Putative TETR-family tr 26.9 2E+02 0.0069 21.6 10.8 60 112-171 39-108 (199)
36 1wmu_A Hemoglobin D alpha chai 25.6 1.6E+02 0.0056 21.7 6.1 88 73-171 2-90 (141)
37 3bni_A Putative TETR-family tr 23.7 2.6E+02 0.0089 21.7 10.2 84 77-172 44-140 (229)
38 1cg5_A Protein (hemoglobin); o 22.9 1.2E+02 0.0042 22.5 4.9 36 137-172 57-92 (141)
39 2odm_A YLAN, UPF0358 protein M 22.8 1.4E+02 0.0046 21.2 4.6 22 68-89 60-81 (91)
40 2qib_A TETR-family transcripti 22.7 1.9E+02 0.0066 22.6 6.5 58 112-169 37-103 (231)
41 3qqa_A CMER; alpha-helical, he 21.7 2.6E+02 0.0089 21.0 9.5 42 112-153 43-85 (216)
42 2oi8_A Putative regulatory pro 21.4 2.9E+02 0.0099 21.4 8.7 85 76-172 16-107 (216)
43 3ppb_A Putative TETR family tr 21.3 2.4E+02 0.0082 20.7 6.5 59 112-170 33-102 (195)
44 2zcx_A SCO7815, TETR-family tr 21.0 3.1E+02 0.01 21.6 7.6 82 76-169 23-113 (231)
45 3i71_A Ethanolamine utilizatio 20.8 67 0.0023 21.0 2.4 29 182-210 16-44 (68)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=3.1e-58 Score=435.68 Aligned_cols=236 Identities=34% Similarity=0.556 Sum_probs=226.7
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceec-cCC
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VEL 103 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~-~~~ 103 (261)
++|+|||++++++.++.|+.|..+|..++++++.+.+||+++++++|+||++++++|.++|+++..+...+.|+++ .++
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 81 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDA 81 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCC
T ss_pred cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999877777888876 689
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
||+||++|+.+.+++|+.|+|||+|+||||+++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 82 ~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~ 161 (457)
T 1tj7_A 82 EDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQ 161 (457)
T ss_dssp SSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEE
T ss_pred CcHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcCCe
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||||||+|++|+++|.||++||.+++++++.+||||++++||++ +++++++.|||+.+..|+++|+++||+++|+++
T Consensus 162 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 240 (457)
T 1tj7_A 162 PVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS 240 (457)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHH
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCCHHHHHHHcCCCCCCCChHHHHHccHHHHHHHH
Confidence 99999999999999999999999999999999999998889988 899999999999999999999999999999875
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=4.2e-58 Score=435.26 Aligned_cols=236 Identities=41% Similarity=0.655 Sum_probs=219.0
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCc
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 104 (261)
+|||+||++++++.+++|+.+..+|..++++++.+.+||++++.++|+||++++++|.++|++|..+...+.|+++.++|
T Consensus 4 ~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~~~ 83 (462)
T 2e9f_A 4 RTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREELE 83 (462)
T ss_dssp ----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCCCGGGC
T ss_pred cccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCcCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999887778898888899
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccccccCCcc
Q psy17727 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHH--IMPGFTHFQFA 182 (261)
Q Consensus 105 dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t--~~~grTH~Q~A 182 (261)
|+||++|+.+.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|+++ +||||||+|+|
T Consensus 84 dv~~~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrTHlQ~A 163 (462)
T 2e9f_A 84 DVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRA 163 (462)
T ss_dssp SHHHHHHHHHHHHHCTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEETTEEE
T ss_pred chHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCccccCcccCccC
Confidence 9999999999999998889999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 183 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|||||||+|++|+++|.|+++||.+++++++.+||||++++||++ +++++++.|||+.+..|+++|+++||+++|+++
T Consensus 164 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~~a~~LG~~~~~~n~~~~~~~rD~~~e~~~ 243 (462)
T 2e9f_A 164 QPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLS 243 (462)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCCCHHHHHHHTTCSEECSCHHHHHHCCHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCCCHHHHHHHhCCCCCCCCcHHHHHccHHHHHHHH
Confidence 999999999999999999999999999999999999999889988 999999999999889999999999999999875
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=1.8e-57 Score=431.49 Aligned_cols=237 Identities=37% Similarity=0.542 Sum_probs=218.7
Q ss_pred hhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCC
Q psy17727 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (261)
Q Consensus 24 ~~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (261)
.++|++||++++++...+|+.+..++..++++++.+.+||+++++++|+||++.+++|.++|++|..+...+.|+++..+
T Consensus 8 ~~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~~ 87 (468)
T 1k7w_A 8 DKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSD 87 (468)
T ss_dssp -----------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTTC
T ss_pred ccccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcccCccCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999988777889988899
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
||+||++++.+.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 88 ~dv~m~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~ 167 (468)
T 1k7w_A 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQ 167 (468)
T ss_dssp CSHHHHHHHHHHHHHCGGGGGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEE
T ss_pred CchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcCCc
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc--ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT--TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~--~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||||||+|++|+++|.|+++||.+++++++.+||||++++||++ +++++++.|||+.+..|+++|+++||+++|+++
T Consensus 168 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~~la~~LG~~~~~~n~~~~~~~rD~~~e~~~ 246 (468)
T 1k7w_A 168 PIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLS 246 (468)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTCCCHHHHHHHHTCSEECSCHHHHHHCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCCCChHHHHHHcCCCCCCCChHHHHHccHHHHHHHH
Confidence 99999999999999999999999999999999999998889988 999999999999889999999999999999875
No 4
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=2.1e-54 Score=410.20 Aligned_cols=249 Identities=18% Similarity=0.212 Sum_probs=225.3
Q ss_pred CccccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcccccc-h--hhhccHHHHHHHHHHHHHHHhcCCCCHHH
Q psy17727 1 MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESIS-V--DEVLYREDIAGSIAHVTMLGERNIIDEQD 77 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~~-~--~~~l~~~~i~~~lA~~~~l~~~Gii~~~~ 77 (261)
|+.|||.|.- |+.+.| . .+|||+ ++++.+++|+.+.. + +..++.+.+.+.+||+++++++|+||+++
T Consensus 1 ~~~r~e~d~~-g~~~vp---~--~~~~g~----~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~ 70 (466)
T 1vdk_A 1 MEYRIERDTM-GEVRVP---A--DKYWGA----QTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEI 70 (466)
T ss_dssp ---CEEEETT-EEEECC---T--TCCCCH----HHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCccccccCC-CCcCCC---c--ccccch----hhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5679999998 999999 3 358998 89999999998864 4 66677888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHH----HHHhC-ccC-Cccc------cCCChhhHHHHHHHH
Q psy17727 78 KELIVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESEL----IRRIG-NVG-RKLH------TGRSRNDQVVLDLRL 141 (261)
Q Consensus 78 a~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l----~~~~g-~~g-~~iH------~G~SsnDi~~Ta~~L 141 (261)
+++|.++|++|..+...+.|++++ .++|+|||+|++| .+.+| +.| ++|| +|+|||||++|+++|
T Consensus 71 a~~I~~a~~~i~~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L 150 (466)
T 1vdk_A 71 AKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYV 150 (466)
T ss_dssp HHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCchhhhccccccccccHHHHHHHHHHHHhCccccccccccccCcCCCCChhhHHHHHHHH
Confidence 999999999999877667788877 7899999999988 77788 567 7888 999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q psy17727 142 FTRRNIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSA 220 (261)
Q Consensus 142 ~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~ 220 (261)
++|+++. .|.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.|+++||.+++++++.+|||||
T Consensus 151 ~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~ 230 (466)
T 1vdk_A 151 AVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGT 230 (466)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCc--ChH-------HHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 221 ALGAPHT--TTN-------ATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 221 a~~Gt~~--~~~-------~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
|+ ||++ +++ ++|+.|||+ .+..|++|++++||+++|+++
T Consensus 231 Av-GT~~~~~~~~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~ 279 (466)
T 1vdk_A 231 AV-GTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMG 279 (466)
T ss_dssp TT-SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHH
T ss_pred cc-CCCccCCchHHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHH
Confidence 87 8877 654 489999999 478899999999999999875
No 5
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=2.5e-54 Score=409.60 Aligned_cols=247 Identities=17% Similarity=0.217 Sum_probs=226.3
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcccccch-hhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISV-DEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~~~-~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I 81 (261)
.|||.|.- |+.+.| . .+|||+ ++++.+++|+.+..+ +..++.+.+.+.+||+++++++|+||++++++|
T Consensus 4 ~r~e~d~~-g~~~vp---~--~~~~g~----~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I 73 (467)
T 1fur_A 4 VRSEKDSM-GAIDVP---A--DKLWGA----QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAI 73 (467)
T ss_dssp CEEEEETT-EEEEEC---T--TCCCCH----HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cCccccCC-CCccCC---c--ccccch----hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 69999988 999998 3 359998 899999999988766 777778889999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCceecc----CCcchhhhHHHHH----HHHhC-ccCCc--cc------cCCChhhHHHHHHHHHHH
Q psy17727 82 VKTLKDIEYDIEHGKVELKV----ELEDIHMNIESEL----IRRIG-NVGRK--LH------TGRSRNDQVVLDLRLFTR 144 (261)
Q Consensus 82 ~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l----~~~~g-~~g~~--iH------~G~SsnDi~~Ta~~L~lr 144 (261)
.++|++|..+...+.|++++ .++|+|||+|++| .+++| +.|+| || +|+|||||++|+++|++|
T Consensus 74 ~~a~~~i~~~~~~~~f~~~~~q~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr 153 (467)
T 1fur_A 74 RQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAAL 153 (467)
T ss_dssp HHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccchhhhccccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHH
Confidence 99999999876677788776 6799999999988 67778 67777 88 999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccC
Q psy17727 145 RNIKA-LIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223 (261)
Q Consensus 145 ~~l~~-l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~ 223 (261)
+++.. |.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.|+++||.+++++++.+||||||+
T Consensus 154 ~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAv- 232 (467)
T 1fur_A 154 LALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV- 232 (467)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchh-
Confidence 99997 9999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCc--ChHH-------HHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 224 APHT--TTNA-------TAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 224 Gt~~--~~~~-------la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||++ ++.+ +|+.|||+ .+..|++||+++||+++|+++
T Consensus 233 GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~ 279 (467)
T 1fur_A 233 GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 279 (467)
T ss_dssp SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred cCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHH
Confidence 8877 6655 99999999 577899999999999999865
No 6
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=1.3e-53 Score=405.88 Aligned_cols=247 Identities=17% Similarity=0.203 Sum_probs=224.5
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-ch--hhhccHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SV--DEVLYREDIAGSIAHVTMLGERNIIDEQDKE 79 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~--~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~ 79 (261)
.|||.|.- |+.+.| . .+|||+ ++++.+++|+.|. .+ +..++++.+.+.+||+++++++|+||+++++
T Consensus 5 ~r~e~d~~-g~~~vp---~--~~~~g~----~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~ 74 (478)
T 1jsw_A 5 IRIEEDLL-GTREVP---A--DAYYGV----HTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVAN 74 (478)
T ss_dssp EEEEECSS-CEEEEE---S--SCCCCH----HHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cCcccccC-CCcCCC---C--ccccch----HHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999988 999888 3 358988 8999999999875 55 6777788999999999999999999999999
Q ss_pred HHHHHHHHHH-hhhhCCCceecc----CCcchhhhHHHHH----HHHhC-ccCC--ccc------cCCChhhHHHHHHHH
Q psy17727 80 LIVKTLKDIE-YDIEHGKVELKV----ELEDIHMNIESEL----IRRIG-NVGR--KLH------TGRSRNDQVVLDLRL 141 (261)
Q Consensus 80 ~I~~al~~i~-~~~~~~~~~~~~----~~~dv~~~ie~~l----~~~~g-~~g~--~iH------~G~SsnDi~~Ta~~L 141 (261)
+|.++|++|. ++...+.|++++ .++|+||++|+++ .+++| +.|+ +|| +|+|||||++|+++|
T Consensus 75 ~I~~a~~~i~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L 154 (478)
T 1jsw_A 75 AIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRI 154 (478)
T ss_dssp HHHHHHHHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhccCCccchhhccCcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHHHHHHHH
Confidence 9999999999 887778888887 7999999999855 45567 4565 677 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q psy17727 142 FTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221 (261)
Q Consensus 142 ~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a 221 (261)
++|+++..|.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.|+++||.+++++++.+||||||
T Consensus 155 ~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~A 234 (478)
T 1jsw_A 155 AVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATA 234 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCc--ChHH-------HHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 222 LGAPHT--TTNA-------TAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 222 ~~Gt~~--~~~~-------la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+ ||++ ++++ +++.|||+ .+..|++|++++||+++|+++
T Consensus 235 v-GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~ 282 (478)
T 1jsw_A 235 I-GTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHG 282 (478)
T ss_dssp S-SSCSSCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHH
T ss_pred c-cCCccCCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHH
Confidence 7 8876 6655 99999999 678899999999999999875
No 7
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=3.8e-53 Score=402.53 Aligned_cols=247 Identities=18% Similarity=0.235 Sum_probs=219.3
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcccccc---hhhhccHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESIS---VDEVLYREDIAGSIAHVTMLGERNIIDEQDKE 79 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~~---~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~ 79 (261)
.|||.|.- |+.+.| . .+|||+ ++++.+++|+.+.. ++..++++.+.+.+|++++++++|+||+++++
T Consensus 28 ~r~e~d~~-g~~~vp---~--~~~~g~----~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~ 97 (488)
T 1yfm_A 28 FRTETDAF-GEIHVP---A--DKYWGA----QTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISK 97 (488)
T ss_dssp EEEECSSS-CCEEEE---S--SCCCCH----HHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cCcccccC-CCcCCC---c--cchhch----HHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58888888 888888 3 359998 99999999998875 46667788888999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHH----HHhC-ccC-Cccc------cCCChhhHHHHHHHHHH
Q psy17727 80 LIVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVG-RKLH------TGRSRNDQVVLDLRLFT 143 (261)
Q Consensus 80 ~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~----~~~g-~~g-~~iH------~G~SsnDi~~Ta~~L~l 143 (261)
+|.++|++|..+...+.|++++ .++|+|||+|++|. +.+| +.| ++|| +|+||||+++|+++|++
T Consensus 98 aI~~a~~ei~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~l 177 (488)
T 1yfm_A 98 AIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAA 177 (488)
T ss_dssp HHHHHHHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCccCcccCcCCCCChhhHHHHHHHHHH
Confidence 9999999999877777788877 78999999999886 5677 556 7788 99999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q psy17727 144 RRNIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAAL 222 (261)
Q Consensus 144 r~~l~-~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~ 222 (261)
|+++. .|.+.|..|+++|.++|++|++++||||||+|+||||||||+|++|+++|.|+++||.+++++++.+||||||+
T Consensus 178 r~~l~~~l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv 257 (488)
T 1yfm_A 178 SLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAV 257 (488)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCc--ChH-------HHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 223 GAPHT--TTN-------ATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 223 ~Gt~~--~~~-------~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||++ +++ .+|+.|||+ .+..|+++++++||+++|+++
T Consensus 258 -GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~ 304 (488)
T 1yfm_A 258 -GTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSG 304 (488)
T ss_dssp -SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred -cCCccCChhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHH
Confidence 8877 554 489999999 568899999999999999875
No 8
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=2.3e-52 Score=397.15 Aligned_cols=245 Identities=20% Similarity=0.257 Sum_probs=215.4
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcccccc-hhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESIS-VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~~-~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I 81 (261)
.|||+|.- |+.+.| . .+|||+ ++++.+++|+.+.. +...++.....+..|++++++++|+||++++++|
T Consensus 32 ~r~e~d~~-g~~~vp---~--~~~~G~----~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI 101 (495)
T 4adm_A 32 YRIEHDTM-GEVRVP---A--KALWRA----QTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLAPEKADAI 101 (495)
T ss_dssp EEEEEETT-EEEEEE---T--TCSCCH----HHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cCCccCcC-CCccCC---h--hhhcCc----hhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 48888887 888888 3 469998 99999999998762 2223333344557899999999999999999999
Q ss_pred HHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHHh--CccCCcccc------CCChhhHHHHHHHHHHHHHHH-
Q psy17727 82 VKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI--GNVGRKLHT------GRSRNDQVVLDLRLFTRRNIK- 148 (261)
Q Consensus 82 ~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~~--g~~g~~iH~------G~SsnDi~~Ta~~L~lr~~l~- 148 (261)
.++|+++..+...+.|++++ .++|+|||+|++|.+++ | |+|+|. |+||||+++|+++|++|+++.
T Consensus 102 ~~a~~ei~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra~lG--G~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~ 179 (495)
T 4adm_A 102 IAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAKG--GVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVA 179 (495)
T ss_dssp HHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHT--TCCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCcchhhccccccccccHHHHHHHHHHhC--CCccCcccccCCCCChhhHHHHHHHHHHHHHHHH
Confidence 99999999887777888876 57999999999999954 7 666775 999999999999999999995
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc-
Q psy17727 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT- 227 (261)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~- 227 (261)
.|.+.|..|+++|.++|++|++++||||||+|+||||||||+|++|+++|.|+++||.+++++++.+||||||+ ||++
T Consensus 180 ~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAv-GT~~~ 258 (495)
T 4adm_A 180 HLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGLN 258 (495)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-SSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-cCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999887 8866
Q ss_pred -Ch-------HHHHhhcCC-C-CCCCCcccccchhhHHHHhcC
Q psy17727 228 -TT-------NATAPELGL-D-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 228 -~~-------~~la~~LGl-~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
++ +++++.||| + .+..|+++|+++||+++|+++
T Consensus 259 ~~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~ 301 (495)
T 4adm_A 259 APDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASG 301 (495)
T ss_dssp SCTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHH
Confidence 44 459999999 4 677899999999999999875
No 9
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=5.5e-52 Score=393.02 Aligned_cols=248 Identities=20% Similarity=0.191 Sum_probs=219.8
Q ss_pred ccccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17727 2 MLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKEL 80 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~ 80 (261)
|.|||+|.- |+.+.| . ..|||. ++.+.+++|+.+. .+...+++..+.+..|++++++++|+||++.+++
T Consensus 4 ~~r~e~d~~-g~~~vp---~--~~~yg~----qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~a 73 (468)
T 3r6q_A 4 DVRIEKDFL-GEKEIP---K--DAYYGV----QTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQY 73 (468)
T ss_dssp -CEEEEETT-EEEEEC---T--TCCCCH----HHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCccccC-CCccCC---c--ccccCH----HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 569999988 999999 3 458988 9999999998653 4445666777888889999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHH----hCc-cCCc--cc------cCCChhhHHHHHHHHHH
Q psy17727 81 IVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRR----IGN-VGRK--LH------TGRSRNDQVVLDLRLFT 143 (261)
Q Consensus 81 I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~----~g~-~g~~--iH------~G~SsnDi~~Ta~~L~l 143 (261)
|.++|+++..+...+.|++++ +++++||++|++|.++ +|+ .|+| || +|+||||+++|+++|++
T Consensus 74 I~~a~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvnevia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~ 153 (468)
T 3r6q_A 74 IVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAV 153 (468)
T ss_dssp HHHHHHHHHTTTTGGGCCSCSSCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCCCccHHhccccccccccHHHHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHH
Confidence 999999999876667788766 4789999999877654 674 4665 88 69999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccC
Q psy17727 144 RRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223 (261)
Q Consensus 144 r~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~ 223 (261)
|+++..|.+.|..|+++|.++|++|++++||||||+|+||||||||+|++|+++|.||++||.+++++++.+||||||+
T Consensus 154 r~~l~~l~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv- 232 (468)
T 3r6q_A 154 LSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAV- 232 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeec-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCc--ChHH-------HHhhcCCCC-CCCCcccccchhhHHHHhcC
Q psy17727 224 APHT--TTNA-------TAPELGLDS-PRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 224 Gt~~--~~~~-------la~~LGl~~-~~~n~~~~~~~rD~~~e~~~ 260 (261)
||++ ++++ +++.|||+. +..|+++|+++||+++|+++
T Consensus 233 GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~ 279 (468)
T 3r6q_A 233 GTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSS 279 (468)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHH
Confidence 8877 6644 799999995 57799999999999999865
No 10
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=2e-51 Score=389.24 Aligned_cols=248 Identities=21% Similarity=0.236 Sum_probs=212.9
Q ss_pred ccccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy17727 2 MLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDK 78 (261)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~--~~l~~~~i~~~lA~~~~l~~~Gii~~~~a 78 (261)
|.|||+|.- |+.+.| . ..|||. ++.+.+++|+.+. .+. ..+++....+..|++++++++|+||++.+
T Consensus 22 ~~r~e~d~~-g~~~vp---~--~~~yG~----qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a 91 (478)
T 3ocf_A 22 MTRREQDSL-GERDIP---M--DAYFGI----QTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKY 91 (478)
T ss_dssp -CEEEEETT-EEEEEC---T--TCSSCH----HHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred CcccccccC-CCccCC---c--ccccCH----HHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 569999988 999998 3 458988 9999999998764 221 34556667788888899999999999999
Q ss_pred HHHHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHH----hC-ccCCc--cc------cCCChhhHHHHHHHH
Q psy17727 79 ELIVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRR----IG-NVGRK--LH------TGRSRNDQVVLDLRL 141 (261)
Q Consensus 79 ~~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~----~g-~~g~~--iH------~G~SsnDi~~Ta~~L 141 (261)
++|.++|++|..+...+.|+++. .++++|||+|++|.++ +| +.|+| || +|+||||+++|+++|
T Consensus 92 ~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L 171 (478)
T 3ocf_A 92 AAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRL 171 (478)
T ss_dssp HHHHHHHHHHHTTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccccCCCcchhhccCCccccchHHHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHH
Confidence 99999999998876667788766 5789999999887654 57 46777 99 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q psy17727 142 FTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221 (261)
Q Consensus 142 ~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a 221 (261)
++|+++..|.+.|..|+++|.++|++|++++||||||+|+|||||||++|++|+++|.|+++||.+++++++.+||||+|
T Consensus 172 ~~~~~l~~L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtA 251 (478)
T 3ocf_A 172 ALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTA 251 (478)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCc--Ch-------HHHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 222 LGAPHT--TT-------NATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 222 ~~Gt~~--~~-------~~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
+ ||++ ++ +.+++.|||+ .+..|+++++++||+++|+++
T Consensus 252 v-GTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~ 299 (478)
T 3ocf_A 252 I-GTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSG 299 (478)
T ss_dssp ----------CHHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHH
T ss_pred e-CCCcCCChhHHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHH
Confidence 7 8876 43 5689999999 567899999999999999865
No 11
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=7.2e-50 Score=378.14 Aligned_cols=247 Identities=20% Similarity=0.191 Sum_probs=217.0
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I 81 (261)
.|||+|.- |+.+.| . .+|||. ++.+.+++|+.+. ..+..+++....+..|+++++.++|+||++.+++|
T Consensus 25 ~r~e~d~~-g~~~vp---~--~~~~g~----qt~Ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI 94 (482)
T 3gtd_A 25 YRIESDSF-GEIQIE---E--KFYWGA----QTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSI 94 (482)
T ss_dssp EEEEEETT-EEEEEE---T--TCCCCH----HHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CcCccccC-CCccCC---c--ccccCH----HHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 58888887 888888 3 469998 9999999998765 34455666667777888888999999999999999
Q ss_pred HHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHH----hC-ccCCc--------cccCCChhhHHHHHHHHHHH
Q psy17727 82 VKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRR----IG-NVGRK--------LHTGRSRNDQVVLDLRLFTR 144 (261)
Q Consensus 82 ~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~----~g-~~g~~--------iH~G~SsnDi~~Ta~~L~lr 144 (261)
.++|+++..+...+.|+++. +++++|||++++|.++ +| +.|+| ||+|+||||+++|+++|+++
T Consensus 95 ~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~ 174 (482)
T 3gtd_A 95 DKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATV 174 (482)
T ss_dssp HHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHH
Confidence 99999999887778898876 5889999999887754 46 45543 55699999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccC
Q psy17727 145 RNIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223 (261)
Q Consensus 145 ~~l~-~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~ 223 (261)
+.+. .|.+.|..|+++|.++|++|++++|+||||+|+||||||||+|++|+++|.|+++||.+++++++.+||||+|+
T Consensus 175 ~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv- 253 (482)
T 3gtd_A 175 LATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAV- 253 (482)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-
Confidence 9984 79999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCc--Ch-------HHHHhhcCCCC-CCCCcccccchhhHHHHhcC
Q psy17727 224 APHT--TT-------NATAPELGLDS-PRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 224 Gt~~--~~-------~~la~~LGl~~-~~~n~~~~~~~rD~~~e~~~ 260 (261)
||++ ++ +++++.|||+. +..|++||+++||+++|+++
T Consensus 254 GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~ 300 (482)
T 3gtd_A 254 GTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSG 300 (482)
T ss_dssp SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred cCCCcCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHH
Confidence 8876 44 46999999995 67899999999999999875
No 12
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.6e-50 Score=379.20 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=216.2
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhcccccc---hhhhccHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESIS---VDEVLYREDIAGSIAHVTMLGERNIIDEQDKE 79 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~~---~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~ 79 (261)
.|||.|.- |+.+.| . .+|||. +|.+.+++|+.+.. +...+++....+..|+++++.+.| ||++.++
T Consensus 30 ~r~e~D~~-G~~~vp---~--~~~~g~----qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~G-l~~~~a~ 98 (490)
T 3e04_A 30 FRIEYDTF-GELKVP---N--DKYYGA----QTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYG-LDPKIAN 98 (490)
T ss_dssp EEEEEETT-EEEEEE---T--TCCCCH----HHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGT-CCHHHHH
T ss_pred CCcccccC-cCccCc---c--hhhhhH----HHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-CCHHHHH
Confidence 59999988 999888 3 469999 99999999998753 334555666677778888888999 9999999
Q ss_pred HHHHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHHh----C-ccCCc--------cccCCChhhHHHHHHHHH
Q psy17727 80 LIVKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NVGRK--------LHTGRSRNDQVVLDLRLF 142 (261)
Q Consensus 80 ~I~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~~----g-~~g~~--------iH~G~SsnDi~~Ta~~L~ 142 (261)
+|.++|++|..+...+.|+++. +++++|||++++|.+++ | +.|+| ||+|+||||+++|+++|+
T Consensus 99 aI~~a~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~ 178 (490)
T 3e04_A 99 AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIA 178 (490)
T ss_dssp HHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHH
Confidence 9999999999887778898775 58999999888887654 6 55654 445999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q psy17727 143 TRRNIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221 (261)
Q Consensus 143 lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a 221 (261)
+++.+. .|.+.|..|+++|.++|++|++++|+||||+|+||||||||+|++|+++|.|+++||.+++++++.+||||||
T Consensus 179 ~~~~~~~~L~~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtA 258 (490)
T 3e04_A 179 AAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTA 258 (490)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 998885 7999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCc--Ch-------HHHHhhcCCCC-CCCCcccccchhhHHHHhcC
Q psy17727 222 LGAPHT--TT-------NATAPELGLDS-PRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 222 ~~Gt~~--~~-------~~la~~LGl~~-~~~n~~~~~~~rD~~~e~~~ 260 (261)
+ ||++ ++ +++++.|||+. +..|+++|+++||+++|+++
T Consensus 259 v-GTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~ 306 (490)
T 3e04_A 259 V-GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSG 306 (490)
T ss_dssp T-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred c-cCCCcCChhHHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHH
Confidence 7 8876 55 45999999995 67899999999999999875
No 13
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=5.9e-49 Score=372.19 Aligned_cols=225 Identities=22% Similarity=0.257 Sum_probs=196.6
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCce--eccC
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE--LKVE 102 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~--~~~~ 102 (261)
.+|++||+++ ++...|++.. ++++.+.+.+||+++++++|+||++.+++|.++|++|...+..+.+. ....
T Consensus 6 ~~~~~ry~~~--~~~~~~sd~~-----~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 78 (454)
T 1q5n_A 6 QLYASLFYQR--DVTEIFSDRA-----LVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLA 78 (454)
T ss_dssp CTTHHHHSCH--HHHHHTSHHH-----HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCHHHHHHHHHHH
T ss_pred CccccccCcH--HHHHHcCcHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHhhcc
Confidence 4888999884 5888898744 44667888899999999999999999999999998665332111111 1226
Q ss_pred CcchhhhHHHHHHHHh----CccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy17727 103 LEDIHMNIESELIRRI----GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTH 178 (261)
Q Consensus 103 ~~dv~~~ie~~l~~~~----g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH 178 (261)
.+|| ++++..|.+++ |+.++|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||
T Consensus 79 ~~dV-ia~~~~l~e~~g~~~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTH 157 (454)
T 1q5n_A 79 GNIA-IPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTW 157 (454)
T ss_dssp SSSH-HHHHHHHHHHHHTTCTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred CCcH-HHHHHHHHHHhccccCCccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccc
Confidence 7999 78899999999 777899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchh
Q psy17727 179 FQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRP 252 (261)
Q Consensus 179 ~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~r 252 (261)
+|+||||||||||++|+++|.|+++||.+++++++.+||||++|+|+++ +++++++.|||+.+..| |+.+|
T Consensus 158 lQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~~~~~~~~~~a~~LG~~~~~~~---~~~~r 234 (454)
T 1q5n_A 158 LQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACT---WHGER 234 (454)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSC---CSSCC
T ss_pred CCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHhhcCcccccccHHHHHHHHHHhCcCCCCCC---CccCc
Confidence 9999999999999999999999999999999999999999987766655 67899999999977665 67899
Q ss_pred hHHHHhcC
Q psy17727 253 GFTIESGH 260 (261)
Q Consensus 253 D~~~e~~~ 260 (261)
|+++|+++
T Consensus 235 D~~~e~~~ 242 (454)
T 1q5n_A 235 DRIVEIAS 242 (454)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 14
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=2.1e-48 Score=368.01 Aligned_cols=223 Identities=21% Similarity=0.236 Sum_probs=194.2
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHhhhhCCCceeccC
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IEYDIEHGKVELKVE 102 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~--i~~~~~~~~~~~~~~ 102 (261)
.+|++||+++ ++...|+... ++++.+.+.+|++++++++|+||++.+++|.++|++ +..+.-.. .....
T Consensus 6 ~~~~~ry~~~--~~~~~~sd~~-----~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~~~--~~~~~ 76 (451)
T 3c8t_A 6 PLYGRSFADD--KMRELFSAQS-----FISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLRD--DTEIV 76 (451)
T ss_dssp CCSSCCCSCH--HHHHHTSHHH-----HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHHHH--HHHHH
T ss_pred CccccccCcH--HHHHHcCCHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHHHH--HhhcC
Confidence 4899999884 5888998744 446677888999999999999999999999999964 11000000 01125
Q ss_pred CcchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17727 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (261)
Q Consensus 103 ~~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A 182 (261)
.+|| ++++..|.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|
T Consensus 77 ~~dV-ia~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A 155 (451)
T 3c8t_A 77 GYPI-LPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHA 155 (451)
T ss_dssp SSSH-HHHHHHHHHHHGGGGGGSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CCcH-HHHHHHHHHHcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeecccCCCCc
Confidence 7899 688899999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhhHHH
Q psy17727 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPGFTI 256 (261)
Q Consensus 183 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD~~~ 256 (261)
|||||||||++|+++|.|+++||.+++++++.+||||++|+|+++ +++++++.|||+.+..| |+.+||+++
T Consensus 156 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~~~~~~~~~~a~~LGl~~~~~~---~~~~rD~~~ 232 (451)
T 3c8t_A 156 LPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGVPSIT---WHSARDAVA 232 (451)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSC---CSSCCHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhcCcccccccHHHHHHHHHHhCCCCCCCC---CccCcHHHH
Confidence 999999999999999999999999999999999999988777666 67899999999977665 677999999
Q ss_pred HhcC
Q psy17727 257 ESGH 260 (261)
Q Consensus 257 e~~~ 260 (261)
|+++
T Consensus 233 e~~~ 236 (451)
T 3c8t_A 233 ETVQ 236 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 15
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=2.7e-48 Score=357.37 Aligned_cols=224 Identities=19% Similarity=0.198 Sum_probs=188.2
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCc
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 104 (261)
.+|+++|+++ ++...|+....+.. ...+.+|++++++++|+||++++++|.++|+++..+...-... ....+
T Consensus 9 ~l~~~~~~~~--~m~~~fs~~~~i~~-----~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~~~~~-~~~~~ 80 (359)
T 2fel_A 9 PFLSGLFGDS--EIIELFSAKADIDA-----MIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALRHG-VAKDG 80 (359)
T ss_dssp TTTHHHHCCH--HHHGGGSHHHHHHH-----HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHHHHHH-HHHHS
T ss_pred cccccccCCH--HHHHHcCcHHHHHH-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHHHHhh-ccccC
Confidence 3666667654 48889998765533 3445577889999999999999999999998765332210000 01123
Q ss_pred chhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 105 DIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 105 dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
+.+.++++.|.+.+| +.+++||+|+|||||+||+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 81 ~~~~~~~~~l~~~~g~~~~~~vH~G~SsnDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~ 160 (359)
T 2fel_A 81 VVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAI 160 (359)
T ss_dssp SSHHHHHHHHHTTSCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CcHHHHHHHHHHHcCccccchhcCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccc
Confidence 344677788888888 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccchhhHHHH
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIWRPGFTIE 257 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~~rD~~~e 257 (261)
|||||++|++|+++|.|+++||.+++++++.+||||++|+++++ +++++|+.|||+.+. +|+++||+++|
T Consensus 161 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGT~~~~~~~~~~~~~~~a~~LG~~~~~----~~~~~RD~~~e 236 (359)
T 2fel_A 161 GITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRP----QWHNQRDGIAE 236 (359)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCTTSSCTTTGGGHHHHHHHHHHHHTCBCCC----CCTTCCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHhccCccCcchHHHHHHHHHHHhCcCCCc----hHHhccHHHHH
Confidence 99999999999999999999999999999999999988777765 578999999999764 48999999999
Q ss_pred hcC
Q psy17727 258 SGH 260 (261)
Q Consensus 258 ~~~ 260 (261)
+++
T Consensus 237 ~~~ 239 (359)
T 2fel_A 237 FAN 239 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 16
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=7.8e-48 Score=366.57 Aligned_cols=247 Identities=18% Similarity=0.162 Sum_probs=209.8
Q ss_pred cccCCCccccccCCCCCchhhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17727 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~f~~~~-~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I 81 (261)
-|||.|.- |+.+.| . .+|||. +|.+.+++|+.+. .+...+++....+..|.|++..++|+||++.+++|
T Consensus 36 ~r~e~d~~-g~~~vp---~--~~~~g~----qt~ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI 105 (495)
T 4hgv_A 36 TRTETDTF-GPIEVA---S--DRYWGA----QAQRSLGNFKIGWEKQPLAIVRALGIVKQAAARANMALGRLDPAIGDAI 105 (495)
T ss_dssp EEEEEETT-EEEEEE---T--TCCCCH----HHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CeeeecCC-CCccCC---C--ccchHH----HHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 37888877 888888 3 569998 9999999999765 22233333344444555666789999999999999
Q ss_pred HHHHHHHHhhhhCCCceecc----CCcchhhhHHHHHHHHh----C-cc--------CCccccCCChhhHHHHHHHHHHH
Q psy17727 82 VKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NV--------GRKLHTGRSRNDQVVLDLRLFTR 144 (261)
Q Consensus 82 ~~al~~i~~~~~~~~~~~~~----~~~dv~~~ie~~l~~~~----g-~~--------g~~iH~G~SsnDi~~Ta~~L~lr 144 (261)
.++|++|..+...+.|+++. +++..|||++++|.+++ | +. ..+||+|+||||+++||++|+++
T Consensus 106 ~~A~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~ 185 (495)
T 4hgv_A 106 VKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACA 185 (495)
T ss_dssp HHHHHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHH
Confidence 99999999887778898876 68899999999999874 4 22 24699999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccC
Q psy17727 145 RNI-KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223 (261)
Q Consensus 145 ~~l-~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~ 223 (261)
+.+ +.|++.|..|+++|.++|++|++++|+||||+|+|+|||||++|++|+++|.|+++||.++++++..+++||+++
T Consensus 186 ~~~~~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAv- 264 (495)
T 4hgv_A 186 ERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAV- 264 (495)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchh-
Confidence 877 579999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCc----Ch-----HHHHhhcCCC-CCCCCcccccchhhHHHHhcC
Q psy17727 224 APHT----TT-----NATAPELGLD-SPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 224 Gt~~----~~-----~~la~~LGl~-~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||+. +. +.+++.+||+ .+..|+++|+++||+++++++
T Consensus 265 Gtg~~~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~ 311 (495)
T 4hgv_A 265 GTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHG 311 (495)
T ss_dssp SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred hhcccCchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHH
Confidence 5543 22 5678888887 556789999999999999864
No 17
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=2.9e-47 Score=358.25 Aligned_cols=214 Identities=20% Similarity=0.153 Sum_probs=188.5
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHHHhhhhCCCceeccCCcc
Q psy17727 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL----KDIEYDIEHGKVELKVELED 105 (261)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al----~~i~~~~~~~~~~~~~~~~d 105 (261)
||+.+ ++...|++. .++++.+.+.+||+++++++|+||++.+++|.++| +.+..+.. ...+|
T Consensus 3 ry~~~--~~~~~~sd~-----~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~~~~~-------~~~~d 68 (429)
T 1c3c_A 3 RYSLS--PMKDLWTEE-----AKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKKIEE-------KTNHD 68 (429)
T ss_dssp GGCCT--THHHHTSHH-----HHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHHHHHH-------HHCCH
T ss_pred CcccH--HHHHHcChH-----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHHh-------ccCCC
Confidence 55553 477788763 34466788889999999999999999999999985 55544321 24789
Q ss_pred hhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccc
Q psy17727 106 IHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPI 185 (261)
Q Consensus 106 v~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~ 185 (261)
| ++++..|.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||||
T Consensus 69 V-ia~~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~ 147 (429)
T 1c3c_A 69 V-VAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPT 147 (429)
T ss_dssp H-HHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEE
T ss_pred h-HHHHHHHHHHcCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCCCcCcCC
Confidence 9 788999999999778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc---ChHHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 186 SLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT---TTNATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 186 T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~---~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||||||++|+++|.|+++||.+++++++.+||||++|+|+++ +++++++.|||+.+..| ||+.+||+++|+++
T Consensus 148 T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e~~~ 223 (429)
T 1c3c_A 148 SFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVS--TQVVPRDRHAFYLS 223 (429)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCSSSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhcCCccCCHHHHHHHHHHcCCCCCCCC--cCccCcHHHHHHHH
Confidence 999999999999999999999999999999999987666666 44999999999976655 68889999999875
No 18
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=2.5e-47 Score=360.67 Aligned_cols=221 Identities=18% Similarity=0.150 Sum_probs=186.3
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhh
Q psy17727 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMN 109 (261)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ 109 (261)
||.. +.++...|+... ++++.+.+.+||++++.++|+||++++++|.++|++...+...-........+||+ +
T Consensus 8 ry~~-~~~~~~i~s~~~-----~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~~~~~~~~~~dV~-a 80 (450)
T 1re5_A 8 AYFT-APAMREIFSDRG-----RLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAI-P 80 (450)
T ss_dssp HHHS-CHHHHHHTSHHH-----HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHHHHHSSSHH-H
T ss_pred hccC-CHHHHHHcCcHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHhccCccHH-H
Confidence 6655 345788887643 44667788899999999999999999999999985311110000000012579997 7
Q ss_pred HHHHHHHHhC---cc-CCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccc
Q psy17727 110 IESELIRRIG---NV-GRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPI 185 (261)
Q Consensus 110 ie~~l~~~~g---~~-g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~ 185 (261)
++..|.+++| +. +++||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||||
T Consensus 81 ~~~~l~e~~g~~~~~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~ 160 (450)
T 1re5_A 81 LVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPV 160 (450)
T ss_dssp HHHHHHHHHHHHCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCCCcccccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccC
Confidence 7788999998 76 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCcCh------HHHHhhcCCCCCCCCcccccchhhHHHHhc
Q psy17727 186 SLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTT------NATAPELGLDSPRGDSLESIWRPGFTIESG 259 (261)
Q Consensus 186 T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~~~------~~la~~LGl~~~~~n~~~~~~~rD~~~e~~ 259 (261)
||||||++|+++|.|+++||.+++++++.+||||++|+|+++++ +++++.|||+.+..+ |+++||+++|++
T Consensus 161 T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~~~~~~~~~la~~LG~~~~~~~---~~~~rD~~~e~~ 237 (450)
T 1re5_A 161 TLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQP---WHTQRDRLVEFA 237 (450)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGGGGHHHHHHHHHHHHTCBCCSSC---CTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhcCCcccCcchHHHHHHHHHHhCcCCCCcc---cccccHHHHHHH
Confidence 99999999999999999999999999999999986544444477 899999999977654 899999999987
Q ss_pred C
Q psy17727 260 H 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 238 ~ 238 (450)
T 1re5_A 238 S 238 (450)
T ss_dssp H
T ss_pred H
Confidence 5
No 19
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=1.1e-46 Score=355.59 Aligned_cols=215 Identities=19% Similarity=0.183 Sum_probs=189.7
Q ss_pred ccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHHHhhhhCCCceeccCCc
Q psy17727 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL----KDIEYDIEHGKVELKVELE 104 (261)
Q Consensus 29 ~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al----~~i~~~~~~~~~~~~~~~~ 104 (261)
.||+. .++...|++. .++++.+.+.+|+++++.++|+||++.+++|.++| +.+..+.. ...+
T Consensus 12 ~~~~~--~~~~~i~sd~-----~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~d~~~i~~~~~-------~~~~ 77 (444)
T 2pfm_A 12 SRYTR--PEMGAIWTEE-----NKFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIYEIEK-------ETRH 77 (444)
T ss_dssp CTTCC--HHHHHHTSHH-----HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHCCCCHHHHHHHHH-------HHCC
T ss_pred Hhcch--HHHHHHcChH-----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHhc-------cCCC
Confidence 47776 4578888764 44466788889999999999999999999999985 55544321 2578
Q ss_pred chhhhHHHHHHHHh--CccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17727 105 DIHMNIESELIRRI--GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (261)
Q Consensus 105 dv~~~ie~~l~~~~--g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A 182 (261)
|| ++++..|.+++ |+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|
T Consensus 78 dV-ia~~~~l~e~~g~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A 156 (444)
T 2pfm_A 78 DV-VAFTRAVSETPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHA 156 (444)
T ss_dssp HH-HHHHHHHHTCTTCCGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CH-HHHHHHHHHHcCCCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCccc
Confidence 99 78889999999 6778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc---ChHHHHhhcCCCCCCCCcccccchhhHHHHhc
Q psy17727 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT---TTNATAPELGLDSPRGDSLESIWRPGFTIESG 259 (261)
Q Consensus 183 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~---~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~ 259 (261)
|||||||||++|+++|.|+++||.+++++++.+||||++|+|+++ +++++++.|||+.+..| ||+.+||+++|++
T Consensus 157 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e~~ 234 (444)
T 2pfm_A 157 EPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANIDPFVEKYVCENLGLEAAPIS--TQTLQRDRHAHYM 234 (444)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCTTSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHHHH
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhhccCCcCCHHHHHHHHHHhCCCCCCCC--cCccCcHHHHHHH
Confidence 999999999999999999999999999999999999987666666 44999999999976655 6888999999987
Q ss_pred C
Q psy17727 260 H 260 (261)
Q Consensus 260 ~ 260 (261)
+
T Consensus 235 ~ 235 (444)
T 2pfm_A 235 S 235 (444)
T ss_dssp H
T ss_pred H
Confidence 5
No 20
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=2.1e-46 Score=349.71 Aligned_cols=214 Identities=21% Similarity=0.163 Sum_probs=184.2
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHHHhhhhCCCceeccC
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT---LKDIEYDIEHGKVELKVE 102 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~a---l~~i~~~~~~~~~~~~~~ 102 (261)
.|++||++ .++...|++ ..++++.+.+.+||++++++.|+||++.+++|.++ ++.+... ....
T Consensus 5 p~~~ry~~--~~~~~i~sd-----~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~d~~~~~~~-------~~~~ 70 (403)
T 1dof_A 5 PFDWRYGS--EEIRRLFTN-----EAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRL-------ERET 70 (403)
T ss_dssp GGGTTSSC--HHHHTTSSH-----HHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------------
T ss_pred CcccccCc--HHHHHHcCh-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHH-------hhcc
Confidence 37789988 457888876 44556678888999999999999999999999987 1111111 1125
Q ss_pred CcchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17727 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (261)
Q Consensus 103 ~~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A 182 (261)
.+|| ++++..|.+++| |+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|
T Consensus 71 ~~dV-ia~~~~l~e~~G--g~~vH~g~SsnD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A 147 (403)
T 1dof_A 71 GHDI-LSLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWA 147 (403)
T ss_dssp -CHH-HHHHHHHHHHHC--CSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CCcH-HHHHHHHHHHcC--CCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCccc
Confidence 7899 788999999998 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc------ChHHHHhhcCCCCCCCCcccccc-hhhHH
Q psy17727 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT------TTNATAPELGLDSPRGDSLESIW-RPGFT 255 (261)
Q Consensus 183 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~------~~~~la~~LGl~~~~~n~~~~~~-~rD~~ 255 (261)
|||||||+|++|+++|.|+ +||.+++++++.+||||++|+|+++ +++++++.|||+.+..+ |++ +||++
T Consensus 148 ~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGgAvGt~~~~~~~~~~~~~~~a~~lGl~~~~~~---~~~~~rD~~ 223 (403)
T 1dof_A 148 EPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVIT---TQVAPRESF 223 (403)
T ss_dssp EEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSC---SSSCCHHHH
T ss_pred ccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccHHHhhCcccccccHHHHHHHHHHhCcCCCCCc---chhhccHHH
Confidence 9999999999999999999 9999999999999999987777655 67889999999966543 788 99999
Q ss_pred HHhcC
Q psy17727 256 IESGH 260 (261)
Q Consensus 256 ~e~~~ 260 (261)
+|+++
T Consensus 224 ~e~~~ 228 (403)
T 1dof_A 224 AVLAS 228 (403)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 21
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=8.5e-46 Score=348.59 Aligned_cols=218 Identities=20% Similarity=0.179 Sum_probs=180.2
Q ss_pred ccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhh
Q psy17727 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHM 108 (261)
Q Consensus 29 ~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~ 108 (261)
.||+++ ++...|++...+.. .+++.+|+++++++ |+||++.+++|.++++ +.. ..-.......+|||+
T Consensus 3 ~ry~~~--~m~~~fs~~~~~~~-----~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~-~d~--~~i~~~e~~~~hdV~- 70 (438)
T 4eei_A 3 KRYDVA--EISKIWADENKYAK-----MLEVELAILEALED-RMVPKGTAAEIRARAQ-IRP--ERVDEIEKVTKHDII- 70 (438)
T ss_dssp GGGCCH--HHHHHHSHHHHHHH-----HHHHHHHHHHHGGG-TTSCTTHHHHHHHHCC-CCH--HHHHHHHHHHSCHHH-
T ss_pred cccCcH--HHHHHcChHHHHHH-----HHHHHHHHHHHHhc-CCCCHHHHHHHHhhCC-CCH--HHHHHHHHhcCCCHH-
Confidence 366554 48888988776644 34445566788999 9999999999988742 210 000000122578995
Q ss_pred hHHHHHHHHhCcc-CCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccH
Q psy17727 109 NIESELIRRIGNV-GRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISL 187 (261)
Q Consensus 109 ~ie~~l~~~~g~~-g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~ 187 (261)
++++.|.+++|+. ++|||+|+|||||++|+++|++|+++..|.+.|..++++|.++|++|+|++||||||+|+||||||
T Consensus 71 a~~~~l~e~~g~~~~~~iH~G~SsnDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~ 150 (438)
T 4eei_A 71 AFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSF 150 (438)
T ss_dssp HHHHHHHTTSCTTTTTTTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEET
T ss_pred HHHHHHHHHcCHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccCccCCchhH
Confidence 8899999999976 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCcCh---HHHHhhcCCCCCCCCcccccchhhHHHHhcC
Q psy17727 188 GHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTT---NATAPELGLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 188 G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~~~---~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||||++|+++|.|+++||.+++++++.+||||++|+|.++++ +++++.|||+.+ .++ +|+++||+++|+++
T Consensus 151 G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~~~~~~~~~~a~~LG~~~~-~~~-~~v~~rD~~~e~~~ 224 (438)
T 4eei_A 151 GQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVE-EVS-TQVIPRDRIAKLIS 224 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTSCCSSSCHHHHHHHHHHHTCCBC-SSC-SSSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccHhhCcccccHHHHHHHHHHcCCCCC-Ccc-ccccccHHHHHHHH
Confidence 999999999999999999999999999999975433333355 889999999743 333 69999999999875
No 22
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-45 Score=351.00 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=190.8
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhhhCCCceeccCC
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI--IDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gi--i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (261)
.+.+||+.+ +++...|++...+.. .++..+|+++++++.|+ ||++++++|.++++++..+...+ .+ ...+
T Consensus 10 pl~~ry~~~-~~m~~~fs~~~~~~~-----~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~-~e-~~~~ 81 (478)
T 1yis_A 10 VLSTRYCKN-SPLVSILSETNKATL-----WRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRS-EE-RKLK 81 (478)
T ss_dssp HHHHTTTTT-CTHHHHTSHHHHHHH-----HHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHH-HH-HHSS
T ss_pred CcccccCCh-HHHHHHcCchHHHHH-----HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhh-HH-HhcC
Confidence 456788775 338889998775544 44556667788999999 99999999999876654432211 11 3578
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17727 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (261)
Q Consensus 104 ~dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~ 183 (261)
||||.+++ .|.+++|+.++|||+|+||||+++|+..|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 82 ~DV~a~v~-~l~e~~g~~~~~iH~G~TS~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~ 160 (478)
T 1yis_A 82 HDVMAHNH-AFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTAS 160 (478)
T ss_dssp CHHHHHHH-HHHHHCTTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEE
T ss_pred CcHHHHHH-HHHHhhhhchhheeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccce
Confidence 99998887 59999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCC------c--Ch-------HHHHhhcCCCCCCCCcccc
Q psy17727 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPH------T--TT-------NATAPELGLDSPRGDSLES 248 (261)
Q Consensus 184 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~------~--~~-------~~la~~LGl~~~~~n~~~~ 248 (261)
||||||+|++|+++|.|+++||.++++++..+++||++ ||+ | |+ +++++.|||+.+..|+. |
T Consensus 161 P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg~~--GT~a~~~~~f~~d~~~~~~v~~~~a~~LG~~~~~~~s~-~ 237 (478)
T 1yis_A 161 LVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGAT--GTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITG-Q 237 (478)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCTTT--SSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSSCS-S
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh--ccchhhhcccCcchhhHHHHHHHHHHHhCcCCCCCccc-c
Confidence 99999999999999999999999999999999998775 665 4 55 88999999996665654 8
Q ss_pred cchhhHHHHhcC
Q psy17727 249 IWRPGFTIESGH 260 (261)
Q Consensus 249 ~~~rD~~~e~~~ 260 (261)
+++||+++|+++
T Consensus 238 ~~~rd~~~e~~~ 249 (478)
T 1yis_A 238 TYSRQQDSQLVF 249 (478)
T ss_dssp SCCTHHHHHHHH
T ss_pred ccCChHHHHHHH
Confidence 999999999875
No 23
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=6e-46 Score=352.35 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=183.7
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhhhCCCc----ee-
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NIIDEQDKELIVKTLKDIEYDIEHGKV----EL- 99 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~-Gii~~~~a~~I~~al~~i~~~~~~~~~----~~- 99 (261)
+|+|||++++.++...|++ ..++++++.+.+||+++|++. |+||++.+++|.. +.++..++..+.+ .+
T Consensus 10 ~~~gRy~~~~~~~~~~~sd-----~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~-l~~~~~~~~~~d~~~i~~~e 83 (465)
T 2qga_B 10 PIDGRYKKACGELSAFFSE-----HALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEV-LNQIATNITDSDIARVKAIE 83 (465)
T ss_dssp TTTTTTHHHHGGGGGTSSH-----HHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHH-HHHHHHCCCHHHHHHHHHHH
T ss_pred cccccccCCcHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHHHh
Confidence 6999999886677777864 556678999999999999999 9999888888864 3333332211111 11
Q ss_pred ccCCcchhhhHHHHHHHHhC--------ccCCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q psy17727 100 KVELEDIHMNIESELIRRIG--------NVGRKLHTGRSRNDQVVLDLRLFTRRNIK-ALIKLLLDTVKQLTRLAQLHKH 170 (261)
Q Consensus 100 ~~~~~dv~~~ie~~l~~~~g--------~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~ 170 (261)
...+||| +++|+.|++++| +.++|||+|+|||||++|+++|++|+++. .|.+.|..++++|.++|++|++
T Consensus 84 ~~~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~ 162 (465)
T 2qga_B 84 EETNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSH 162 (465)
T ss_dssp HHHSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCCh-HHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2268999 999999999997 56899999999999999999999999999 7999999999999999999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCC--------C------cChHHHHhhc
Q psy17727 171 HIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAP--------H------TTTNATAPEL 236 (261)
Q Consensus 171 t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt--------~------~~~~~la~~L 236 (261)
++||||||+||||||||||+|++|+++|.|+++||.+++ .+++||||+ || + +++.++++.|
T Consensus 163 ~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT~~a~~~~~p~~d~~~~~~~~~~~~L 237 (465)
T 2qga_B 163 VPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAV-GNFNAHKVASKDTDWVNTIGLFLKKHF 237 (465)
T ss_dssp CEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTT-SSCHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred cEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH----Hhccccchh-cCccccccccCcccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998876 567677777 88 1 1345566679
Q ss_pred CCCCCCCCcccccchhhHHHHhcC
Q psy17727 237 GLDSPRGDSLESIWRPGFTIESGH 260 (261)
Q Consensus 237 Gl~~~~~n~~~~~~~rD~~~e~~~ 260 (261)
||+.+..+ +|+++||+++|+++
T Consensus 238 Gl~~~~~~--~~~~~rD~~~e~~~ 259 (465)
T 2qga_B 238 NLTYSIYC--TQIQDHDYICELCD 259 (465)
T ss_dssp CCEECCCC--SSSCCCHHHHHHHH
T ss_pred CCCCCCCc--cchhccHHHHHHHH
Confidence 99855432 68999999999875
No 24
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=9.9e-45 Score=346.57 Aligned_cols=222 Identities=14% Similarity=0.121 Sum_probs=188.9
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhhCCCceeccCCc
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gi-i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 104 (261)
.+.+||+++ ++...|+....+.. .++..+|+++++++.|+ ||++++++|.++++++..+...+ .+ ...+|
T Consensus 38 pl~~ry~~~--~m~~~fS~~~~~~~-----~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~-~e-~~~~h 108 (503)
T 2j91_A 38 PLASRYASP--EMCFVFSDRYKFRT-----WRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAE-EE-KRLRH 108 (503)
T ss_dssp HHHHTTSCH--HHHHHTSHHHHHHH-----HHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHH-HH-HHHSC
T ss_pred CcccccCCH--HHHHHhChhHHHHH-----HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhh-hh-hhcCC
Confidence 356688875 58999998776544 34455566788999999 99999999998875554332111 11 34689
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17727 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (261)
Q Consensus 105 dv~~~ie~~l~~~~g~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P 184 (261)
|||.+++ .|.+++|+.++|||+|+||||+++|+..|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|||
T Consensus 109 DV~a~v~-~l~e~~g~~~~~iH~G~TS~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P 187 (503)
T 2j91_A 109 DVMAHVH-TFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQL 187 (503)
T ss_dssp HHHHHHH-HHHHHCTTTGGGTTTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEE
T ss_pred cHHHHHH-HHHHHhccccccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccee
Confidence 9988887 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCC------c--Ch-------HHHHhhcCCCCCCCCccccc
Q psy17727 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPH------T--TT-------NATAPELGLDSPRGDSLESI 249 (261)
Q Consensus 185 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~------~--~~-------~~la~~LGl~~~~~n~~~~~ 249 (261)
|||||+|++|+++|.|+++||.++++++..+++||++ ||+ | |+ +++++.|||+.+..++. |+
T Consensus 188 ~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG~~--GT~a~~~~~f~~D~~~~~~v~~~~a~~LGl~~~~~~s~-~~ 264 (503)
T 2j91_A 188 TTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTT--GTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-QT 264 (503)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCCTT--SSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSCCS-SS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--cchhhhccccCCchHHHHHHHHHHHHHhCCCCCCCccc-cc
Confidence 9999999999999999999999999999999998765 555 3 44 88999999996655653 89
Q ss_pred chhhHHHHhcC
Q psy17727 250 WRPGFTIESGH 260 (261)
Q Consensus 250 ~~rD~~~e~~~ 260 (261)
++||+++|+++
T Consensus 265 ~~rd~~~e~~~ 275 (503)
T 2j91_A 265 YTRKVDIEVLS 275 (503)
T ss_dssp CCTHHHHHHHH
T ss_pred ccChHHHHHHH
Confidence 99999999875
No 25
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.5e-44 Score=342.24 Aligned_cols=221 Identities=17% Similarity=0.202 Sum_probs=183.4
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhc-CC--C---CHHHHHHHHHHHHHHHhh-hhC-CC
Q psy17727 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI--I---DEQDKELIVKTLKDIEYD-IEH-GK 96 (261)
Q Consensus 25 ~l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~-Gi--i---~~~~a~~I~~al~~i~~~-~~~-~~ 96 (261)
.+|+|||+++++++...|++ ..++++++.+.+||+++|++. |+ | +++++++|.+.++++..+ +.. .+
T Consensus 13 s~~~gRy~~~~~~~~~~fsd-----~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d~~~~~~ 87 (459)
T 3bhg_A 13 SPIDGRYVNKTRALSPYFSE-----FALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKE 87 (459)
T ss_dssp STTTTTTHHHHGGGTTTSSH-----HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccccCChHHHHHHcCH-----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccccHHHHHH
Confidence 36999999987778999985 556688999999999999999 88 4 489999999988665321 100 00
Q ss_pred ceeccCCcchhhhHHHHHHHHhCc------cCCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q psy17727 97 VELKVELEDIHMNIESELIRRIGN------VGRKLHTGRSRNDQVVLDLRLFTRRNIK-ALIKLLLDTVKQLTRLAQLHK 169 (261)
Q Consensus 97 ~~~~~~~~dv~~~ie~~l~~~~g~------~g~~iH~G~SsnDi~~Ta~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~ 169 (261)
.+ ...+||| +++|+.|.+++|+ .++|||+|+|||||++|+++|++|+++. .|.+.|..|+++|.++|++|+
T Consensus 88 ~e-~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~ 165 (459)
T 3bhg_A 88 FE-KQTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHA 165 (459)
T ss_dssp HT-TTCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HH-HhcCCCh-HHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 10 2368999 9999999999973 4789999999999999999999999999 799999999999999999999
Q ss_pred CccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCC------CcC-------hHHHHhhc
Q psy17727 170 HHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAP------HTT-------TNATAPEL 236 (261)
Q Consensus 170 ~t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt------~~~-------~~~la~~L 236 (261)
+++||||||+|+||||||||+|++|+++|.|+++||.+++ .++.||||+ || .++ ...+++.|
T Consensus 166 ~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT~~a~~~~~~~~~~~~~~~~~~~~L 240 (459)
T 3bhg_A 166 DVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAV-GNYNAHVAAYPEVDWRKHCANFVTSL 240 (459)
T ss_dssp TCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSS-SSCHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred CCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccc-ccccccccccCcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999877 355556676 77 111 24466669
Q ss_pred CCCCCCCCccc-ccchhhHHHHhcC
Q psy17727 237 GLDSPRGDSLE-SIWRPGFTIESGH 260 (261)
Q Consensus 237 Gl~~~~~n~~~-~~~~rD~~~e~~~ 260 (261)
||+.+ +++ |+++||+++|+++
T Consensus 241 Gl~~~---~~~~~~~~rD~~~e~~~ 262 (459)
T 3bhg_A 241 GLSFN---AYTTQIEPHDGIAEVSQ 262 (459)
T ss_dssp TCEEC---SSCSSSCCCHHHHHHHH
T ss_pred CCCCC---ccccchhcCHHHHHHHH
Confidence 99743 344 7999999999875
No 26
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=1.2e-43 Score=336.38 Aligned_cols=222 Identities=14% Similarity=0.146 Sum_probs=185.8
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhc-CC--CC---HHHHHHHHHHHHHHHhh-hhC-CCc
Q psy17727 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI--ID---EQDKELIVKTLKDIEYD-IEH-GKV 97 (261)
Q Consensus 26 l~~~r~~~~~~~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~-Gi--i~---~~~a~~I~~al~~i~~~-~~~-~~~ 97 (261)
+|+|||++++.++...|++ ..++++++.+.+|+++++++. |+ || ++++++|.++|+++..+ +.. ...
T Consensus 11 ~~~gRy~~~~~~~~~~fsd-----~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g~~~~~~~~ 85 (462)
T 2ptr_A 11 PVDGRYGDKVSALRGIFSE-----YGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTI 85 (462)
T ss_dssp TTTTTTGGGSGGGGGTTSH-----HHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccccccCchHHHHHHCCc-----HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccCCHHHHHhh
Confidence 6999999987778999984 566688999999999999999 66 33 89999999999776432 000 001
Q ss_pred eeccCCcchhhhHHHHHHHHhCc------cCCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q psy17727 98 ELKVELEDIHMNIESELIRRIGN------VGRKLHTGRSRNDQVVLDLRLFTRRNIK-ALIKLLLDTVKQLTRLAQLHKH 170 (261)
Q Consensus 98 ~~~~~~~dv~~~ie~~l~~~~g~------~g~~iH~G~SsnDi~~Ta~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~ 170 (261)
+ ...++|+ ++++..+++++|+ .+++||+|+|||||++|+++|++|+++. .|.+.|..|+++|.++|++|++
T Consensus 86 ~-~~~~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~~~~~ 163 (462)
T 2ptr_A 86 E-RTTNHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRD 163 (462)
T ss_dssp H-HHHSCHH-HHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT
T ss_pred c-cccCCCH-HHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1 2358999 9999999999984 4789999999999999999999999999 5999999999999999999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCc----C-------hHHHHhhcCCC
Q psy17727 171 HIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHT----T-------TNATAPELGLD 239 (261)
Q Consensus 171 t~~~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg~a~~Gt~~----~-------~~~la~~LGl~ 239 (261)
++||||||+|+|||||||++|++|+++|.|+++||.+++ ..+++||++|+|.+. + ...+++.|||.
T Consensus 164 ~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~GAvGT~~~~~~~~~~~~~~~v~~~~~~~LGl~ 240 (462)
T 2ptr_A 164 IPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE---ILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ 240 (462)
T ss_dssp CEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCCTTSSCHHHHHHCTTSCHHHHHHHHHHHTTCE
T ss_pred CEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---HHhccCchhcchhhcccccCcccHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999987 378888765544311 2 24566779994
Q ss_pred CCCCCccc-ccchhhHHHHhcC
Q psy17727 240 SPRGDSLE-SIWRPGFTIESGH 260 (261)
Q Consensus 240 ~~~~n~~~-~~~~rD~~~e~~~ 260 (261)
.|+++ |+++||+++|+++
T Consensus 241 ---~n~~~~~~~~rD~~~e~~~ 259 (462)
T 2ptr_A 241 ---WNPYTTQIEPHDYIAELFD 259 (462)
T ss_dssp ---ECCCCSSSCCCHHHHHHHH
T ss_pred ---CCchhhhhcCCHHHHHHHH
Confidence 56778 6999999999875
No 27
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=36.65 E-value=1.4e+02 Score=22.70 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=39.3
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcCcccc
Q psy17727 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALI----------KLLLDTVKQLTRLAQLHKHHIMP 174 (261)
Q Consensus 112 ~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~----------~~l~~l~~~L~~~A~~~~~t~~~ 174 (261)
+.|++.+| ..+..-|+-.|..|++...+.-.+.+....+. +.|..+...+.+...++......
T Consensus 55 ~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 128 (218)
T 3dcf_A 55 DDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILRNLDANTL 128 (218)
T ss_dssp HHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 56788888 44443344559999998877666655554433 34566666666666666544433
No 28
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=33.58 E-value=1.5e+02 Score=22.25 Aligned_cols=87 Identities=9% Similarity=0.010 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHH---
Q psy17727 76 QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALI--- 151 (261)
Q Consensus 76 ~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~--- 151 (261)
+..+.|.++..++..+..-..+ . + +.|++.+| ..+..-|+-.|..|++...+.-.+.+....+.
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~-------t----~-~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGAT-------T----T-REIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAAD 83 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTC-------C----H-HHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCcC-------C----H-HHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777776666544221111 1 2 57899999 45554445569999999887776666554443
Q ss_pred -------HHHHHHHHHHHHHHHHhcCcccc
Q psy17727 152 -------KLLLDTVKQLTRLAQLHKHHIMP 174 (261)
Q Consensus 152 -------~~l~~l~~~L~~~A~~~~~t~~~ 174 (261)
+.+..+...+.+...++......
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (211)
T 3him_A 84 FPDIAAPDRLMSTVTAYVTWHADNRASARV 113 (211)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 34666777777766666554433
No 29
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=30.46 E-value=1.7e+02 Score=22.01 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=38.8
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcCcc
Q psy17727 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKAL----------IKLLLDTVKQLTRLAQLHKHHI 172 (261)
Q Consensus 112 ~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l----------~~~l~~l~~~L~~~A~~~~~t~ 172 (261)
+.|++.+| ..+..-|+-.|..|++...+.-...+....+ .+.+..+...+.+...++....
T Consensus 49 ~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 120 (212)
T 3nxc_A 49 AKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLT 120 (212)
T ss_dssp HHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhchhHH
Confidence 57888898 4455444555999999888765555444433 3345666666666666665543
No 30
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=30.38 E-value=11 Score=20.54 Aligned_cols=15 Identities=33% Similarity=0.301 Sum_probs=11.8
Q ss_pred ccccCCccccccHHH
Q psy17727 175 GFTHFQFAQPISLGH 189 (261)
Q Consensus 175 grTH~Q~A~P~T~G~ 189 (261)
.|+|-|+|.|+.-|.
T Consensus 1 Dr~Hp~~agp~p~gq 15 (26)
T 1fgl_B 1 DRXHPVHAGPIAPGQ 15 (26)
T ss_pred CCcCcccCCCCCCCC
Confidence 378999999987664
No 31
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=29.00 E-value=1.2e+02 Score=20.62 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHHhcccccchhhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17727 37 EFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (261)
Q Consensus 37 ~~~~~f~~~~~~~~~l~~~~i~~~lA~~~~l~~~Gii~~~~a~~I 81 (261)
-.+..|..-+-+-.+++ +++-..-.++.+.+.|+|+++....-
T Consensus 10 QLLK~fG~~IY~GdR~~--DielM~~El~~Ly~~~lId~~~y~~A 52 (72)
T 2nn4_A 10 QLLKTFGHIVYFGDREL--EIEFMLDELKELYMNHMIEKEQWARA 52 (72)
T ss_dssp HHHHTTTCCCCCSCHHH--HHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHCCEEEEeCChHH--HHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 36777776555545543 77777777789999999999875543
No 32
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=28.76 E-value=25 Score=30.58 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=36.9
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHH
Q psy17727 124 KLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLG 188 (261)
Q Consensus 124 ~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G 188 (261)
.+--|+|.+|+.. +....-.-..+..-|.+++.+.|.++ .|+|-++|-|+..|
T Consensus 174 ALSeg~Tp~Dln~------mLn~vgghqaamQ~lkd~inEeAaeW------dr~HP~~agp~ppg 226 (289)
T 1l6n_A 174 ALSEGATPQDLNT------MLNTVGGHQAAMQMLKETINEEAAEW------DRLHPVHAGPIAPG 226 (289)
T ss_dssp HHTTTCCHHHHHH------HHHHCCSCHHHHHHHHHHHHHHHHHH------HHHSCCCCCSCCSS
T ss_pred HHhcccChHHHHH------HHHhccchHHHHHHHHHHHHHHHHHh------hccCCCCCCCCCCC
Confidence 4568999999884 22223333445555667888888887 68999999887655
No 33
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=27.70 E-value=1.8e+02 Score=21.39 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=39.9
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcCc
Q psy17727 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKAL----------IKLLLDTVKQLTRLAQLHKHH 171 (261)
Q Consensus 112 ~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l----------~~~l~~l~~~L~~~A~~~~~t 171 (261)
+.|++.+| ..+..-|+-.|..|++...+.-.+.+....+ .+.+..+...+.+...+++..
T Consensus 32 ~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 102 (195)
T 3pas_A 32 GKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLERPEL 102 (195)
T ss_dssp HHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 56888888 4455556778899999988776666555443 344556666666666655544
No 34
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=27.37 E-value=35 Score=26.48 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=34.0
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHH
Q psy17727 125 LHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGH 189 (261)
Q Consensus 125 iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~grTH~Q~A~P~T~G~ 189 (261)
+--|+|.+|+..- | ...-.-.....-|.+.+.+.|.++ .|+|- +|-|+..|.
T Consensus 42 LSegaTP~Dln~m---L---n~vgghqaamQ~lkd~INEeaaew------dr~HP-~~gP~ppgq 93 (144)
T 2wlv_A 42 LSEGCTPYDINQM---L---NCVGDHQAAMQIIREIINEEAAEW------DVQHP-IPGPLPAGQ 93 (144)
T ss_dssp HTTTCCHHHHHHH---H---HTTTTCHHHHHHHHHHHHHHHHHH------HHTCC-CCCCCCTTS
T ss_pred HhcccCcHHHHHH---H---HhccccHHHHHHHHHHHHHHHHHh------cccCC-CCCCCCCCC
Confidence 4568999998732 1 222223444555667778888887 68888 788877663
No 35
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=26.91 E-value=2e+02 Score=21.57 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=38.3
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcCc
Q psy17727 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKAL---------IKLLLDTVKQLTRLAQLHKHH 171 (261)
Q Consensus 112 ~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l---------~~~l~~l~~~L~~~A~~~~~t 171 (261)
+.|++.+| ..+..-|+-.|..|++...+.-.+.+....+ .+.|..+...+.+...++...
T Consensus 39 ~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (199)
T 2rek_A 39 EEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARSLAAEHPPATALTRWLTSLAVFGAVTRGA 108 (199)
T ss_dssp HHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcHH
Confidence 46788888 4455455667899999887766555544322 345666666666666666543
No 36
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=25.55 E-value=1.6e+02 Score=21.70 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhCccCCcc-ccCCChhhHHHHHHHHHHHHHHHHHH
Q psy17727 73 IDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKL-HTGRSRNDQVVLDLRLFTRRNIKALI 151 (261)
Q Consensus 73 i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g~~g~~i-H~G~SsnDi~~Ta~~L~lr~~l~~l~ 151 (261)
+++++...|.+....+..+.. .+ +. ..+. .+-+..++...+. |++.+.++---.+....+..++..+.
T Consensus 2 lt~~~~~~v~~sw~~v~~~~~--~~-----g~---~~~~-rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~al~~~v 70 (141)
T 1wmu_A 2 LTEDDKQLIQHVWEKVLEHQE--DF-----GA---EALE-RMFIVYPSTKTYFPHFDLHHDSEQIRHHGKKVVGALGDAV 70 (141)
T ss_dssp CCHHHHHHHHHHHHHHGGGHH--HH-----HH---HHHH-HHHHHSGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccHH--HH-----HH---HHHH-HHHHHCccHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 566776777666666543210 00 00 1122 2223334333322 23444333333356677778888888
Q ss_pred HHHHHHHHHHHHHHHHhcCc
Q psy17727 152 KLLLDTVKQLTRLAQLHKHH 171 (261)
Q Consensus 152 ~~l~~l~~~L~~~A~~~~~t 171 (261)
..|+++...|..++..|...
T Consensus 71 ~~ld~l~~~l~~L~~~H~~~ 90 (141)
T 1wmu_A 71 KHIDNLSATLSELSNLHAYN 90 (141)
T ss_dssp HTTTSHHHHTHHHHHHHHHT
T ss_pred HhHhhHHHHHHHHHHHHHHH
Confidence 88888999999999999763
No 37
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=23.73 E-value=2.6e+02 Score=21.74 Aligned_cols=84 Identities=7% Similarity=0.003 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHH----
Q psy17727 77 DKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALI---- 151 (261)
Q Consensus 77 ~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~---- 151 (261)
..+.|.++..++..+..-..+ . + +.|++.+| ..+..-|+-.|..|++...+.-...+....+.
T Consensus 44 ~r~~Il~aA~~l~~~~G~~~~-------t----v-~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~ 111 (229)
T 3bni_A 44 RLTRILDACADLLDEVGYDAL-------S----T-RAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLT 111 (229)
T ss_dssp HHHHHHHHHHHHHHHHCTTTC-------C----H-HHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhc-------c----H-HHHHHHHCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677776666543211111 1 2 56888888 44554556678999999887766665554433
Q ss_pred --------HHHHHHHHHHHHHHHHhcCcc
Q psy17727 152 --------KLLLDTVKQLTRLAQLHKHHI 172 (261)
Q Consensus 152 --------~~l~~l~~~L~~~A~~~~~t~ 172 (261)
+.|..++..+.+...++++..
T Consensus 112 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 140 (229)
T 3bni_A 112 EAGDGGWRGALDTVLDEYLAMKRTAPGFS 140 (229)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhhCccHH
Confidence 335555666666666665543
No 38
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=22.91 E-value=1.2e+02 Score=22.52 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17727 137 LDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHI 172 (261)
Q Consensus 137 Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~ 172 (261)
-+....+..++..+...|+++...|..++..|....
T Consensus 57 ~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~~~ 92 (141)
T 1cg5_A 57 KKHGKRVMNALADATHHLDNLHLHLEDLARKHGENL 92 (141)
T ss_dssp HHHHHHHHHHHHHHTTCTTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHc
Confidence 355667777888888888889999999999998633
No 39
>2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp}
Probab=22.84 E-value=1.4e+02 Score=21.24 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHH
Q psy17727 68 GERNIIDEQDKELIVKTLKDIE 89 (261)
Q Consensus 68 ~~~Gii~~~~a~~I~~al~~i~ 89 (261)
.++|+|+.++.+.|...++.-.
T Consensus 60 vrlGli~~~~Gk~ll~~LE~~L 81 (91)
T 2odm_A 60 VKLGLVDREDGKQIMLRLEKEL 81 (91)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHCCccHHHHHHHHHHHHHHH
Confidence 6899999999999988776543
No 40
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=22.71 E-value=1.9e+02 Score=22.56 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=30.4
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhc
Q psy17727 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKAL--------IKLLLDTVKQLTRLAQLHK 169 (261)
Q Consensus 112 ~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l--------~~~l~~l~~~L~~~A~~~~ 169 (261)
+.|++.+| ..+..-|+-.|..|++...+.-.+.+....+ .+.+..++..+.+...+|.
T Consensus 37 ~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (231)
T 2qib_A 37 DEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDLADRFVEPRQGPLGARLLRVMGRYFDFVDEHG 103 (231)
T ss_dssp HHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCCSCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHCh
Confidence 45677777 3344333444777777766555444433322 2445555555555555443
No 41
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=21.73 E-value=2.6e+02 Score=21.03 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy17727 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKL 153 (261)
Q Consensus 112 ~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~ 153 (261)
+.|++.+| ..+..-|+-.|..|++...+.-.+.+....+...
T Consensus 43 ~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 85 (216)
T 3qqa_A 43 SDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSK 85 (216)
T ss_dssp HHHHHHHTTSCCSSSCSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999 5555555667999999988777666655544433
No 42
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.38 E-value=2.9e+02 Score=21.43 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHH-
Q psy17727 76 QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKL- 153 (261)
Q Consensus 76 ~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~- 153 (261)
+..+.|.++..++..+..-..+ . + +.|++.+| ..+..-|+-.|..|++...+.-.+.+....+...
T Consensus 16 ~~r~~il~aA~~l~~~~G~~~~-------s----~-~~IA~~agvs~~t~Y~~F~~K~~L~~a~~~~~~~~~~~~~~~~~ 83 (216)
T 2oi8_A 16 QVRAEIKDHAWEQIATAGASAL-------S----L-NAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQADSLRAAA 83 (216)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC-------C----H-HHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccC-------C----H-HHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677776666544221111 1 2 57889998 4444344455999999887766665555544433
Q ss_pred -----HHHHHHHHHHHHHHhcCcc
Q psy17727 154 -----LLDTVKQLTRLAQLHKHHI 172 (261)
Q Consensus 154 -----l~~l~~~L~~~A~~~~~t~ 172 (261)
+..+...+.+.+.+|++..
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~~~~~ 107 (216)
T 2oi8_A 84 ASGADLAGLAHALRAWALDDPQRY 107 (216)
T ss_dssp HTTCCHHHHHHHHHHHHHHCHHHH
T ss_pred ccchhHHHHHHHHHHHHHhChHHh
Confidence 5566777777777766543
No 43
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=21.28 E-value=2.4e+02 Score=20.72 Aligned_cols=59 Identities=12% Similarity=-0.005 Sum_probs=38.2
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcC
Q psy17727 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKAL----------IKLLLDTVKQLTRLAQLHKH 170 (261)
Q Consensus 112 ~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l----------~~~l~~l~~~L~~~A~~~~~ 170 (261)
+.|++.+| ..+..-|+-.|..|++...+.-+..+....+ .+.+..+...+.+...+++.
T Consensus 33 ~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 102 (195)
T 3ppb_A 33 ATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAMANPL 102 (195)
T ss_dssp HHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcCHH
Confidence 56788888 4444333444999999887776666655544 34566666666666666553
No 44
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=20.99 E-value=3.1e+02 Score=21.55 Aligned_cols=82 Identities=9% Similarity=0.024 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhhhCCCceeccCCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHH-
Q psy17727 76 QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKL- 153 (261)
Q Consensus 76 ~~a~~I~~al~~i~~~~~~~~~~~~~~~~dv~~~ie~~l~~~~g-~~g~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~- 153 (261)
+..+.|.++..++..+..-.+. . + +.|++.+| ..+..-|+-.|..|++...+.-.+.+....+...
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~-------s----~-~~IA~~agvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~ 90 (231)
T 2zcx_A 23 QREEAILDAARELGTERGIREI-------T----L-TDIAATVGMHKSALLRYFETREQIFLKITAEGWKEWSAELCARL 90 (231)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTC-------C----H-HHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccC-------C----H-HHHHHHhCCCHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455676666665543211111 1 2 46788888 4444444557899988887765555544433322
Q ss_pred -------HHHHHHHHHHHHHHhc
Q psy17727 154 -------LLDTVKQLTRLAQLHK 169 (261)
Q Consensus 154 -------l~~l~~~L~~~A~~~~ 169 (261)
+..+...+.+...+++
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~ 113 (231)
T 2zcx_A 91 RELPGAAPDAVGQVFAATLAARP 113 (231)
T ss_dssp TTSCTTCHHHHHHHHHHHHHTCH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCH
Confidence 3445555555544443
No 45
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=20.82 E-value=67 Score=21.03 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=26.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17727 182 AQPISLGHYLLAYASMFRRDIERLLDCRR 210 (261)
Q Consensus 182 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~ 210 (261)
.|-+|.|...+.|.++|.....+|+.++.
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~ 44 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFS 44 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHh
Confidence 67799999999999999999999999875
Done!