RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17727
(261 letters)
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 312 bits (802), Expect = e-105
Identities = 118/228 (51%), Positives = 148/228 (64%), Gaps = 8/228 (3%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+LW G F + +E +++F SIS D+ L EDIAGSIAH ML ++ I+ E++ E I+
Sbjct: 4 NKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILA 63
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFT 143
L +I +IE GK E ELEDIHM IE+ L RIG+VG KLHTGRSRNDQV DLRL+
Sbjct: 64 GLDEILEEIEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYL 123
Query: 144 RRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIE 203
R I + +LLL+ K L LA+ H IMPG+TH Q AQP++ GH+LLAYA M RD+E
Sbjct: 124 RDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLE 183
Query: 204 RLLDCRRRVNVNPLGSAALGAPHTTT-----NATAPELGLDSPRGDSL 246
RL D R+RVN +PLGSAAL TT TA LG D +SL
Sbjct: 184 RLRDARKRVNRSPLGSAALA---GTTFPIDRERTAELLGFDGVTENSL 228
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 274 bits (702), Expect = 1e-90
Identities = 114/218 (52%), Positives = 139/218 (63%), Gaps = 8/218 (3%)
Query: 45 SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104
SIS D L+ EDIAGSIAH ML E+ I+ E++ I+ L I +IE G EL E E
Sbjct: 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDE 60
Query: 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRL 164
DIHM IE LI RIG+VG KLHTGRSRNDQV DLRL+ R + L++LLLD + L
Sbjct: 61 DIHMAIERRLIERIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDR 120
Query: 165 AQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGA 224
A+ H IMPG+TH Q AQPI+ GHYLLAYA M RD+ERL D +RVNV+PLG+ AL
Sbjct: 121 AEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLADAYKRVNVSPLGAGALA- 179
Query: 225 PHTTT-----NATAPELGLDSPRGDSLESIWRPGFTIE 257
TT TA LG D P +SL+++ F +E
Sbjct: 180 --GTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLE 215
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 271 bits (694), Expect = 5e-89
Identities = 109/239 (45%), Positives = 149/239 (62%), Gaps = 8/239 (3%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+LW G F + +++FN SIS D+ L DIAGSIAH ML ++ II E++ I++
Sbjct: 3 NKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILE 62
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFT 143
L+++ +I GK EL + ED+H IE+ LI RIG+VG KLHTGRSRNDQV DLRL+
Sbjct: 63 GLEELLEEIRAGKFELDPDDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWL 122
Query: 144 RRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIE 203
R + L++L+ K L LA+ H +MPG+TH Q AQP++ H+LLAYA M RDIE
Sbjct: 123 RDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIE 182
Query: 204 RLLDCRRRVNVNPLGSAALGAPHTTTNA-----TAPELGLDSPRGDSLESIWRPGFTIE 257
RL D +RVNV+PLG+ AL T TA LG D+ +SL+++ F +E
Sbjct: 183 RLRDALKRVNVSPLGAGALA---GTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILE 238
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 244 bits (624), Expect = 1e-78
Identities = 107/239 (44%), Positives = 143/239 (59%), Gaps = 9/239 (3%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F M+ + +FN S+S D+ L DI GSIAH ML + I+ E++ I++ L
Sbjct: 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGL 60
Query: 86 KDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTR 144
+++ + G L + EDIHM IE ELI R+G ++G KLHTGRSRNDQV DLRL+ R
Sbjct: 61 NELKEEGREGPFILDPDDEDIHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLR 120
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
++ L + LLD L LA+ H +MPG+TH Q AQPI+L H+LLAYA M RD ER
Sbjct: 121 DHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRAQPITLAHHLLAYAEMLLRDYER 180
Query: 205 LLDCRRRVNVNPLGSAALGAPHTTT-----NATAPELGLDSPRGDSLESIWRPGFTIES 258
L D +RVNV+PLGS AL T A LG D+ +SL+++ F +E
Sbjct: 181 LQDALKRVNVSPLGSGALA---GTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILEL 236
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 228 bits (583), Expect = 3e-72
Identities = 101/248 (40%), Positives = 150/248 (60%), Gaps = 2/248 (0%)
Query: 12 GEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERN 71
+ ++ + K+LW G F++ + +++FNESIS D+ LY+EDI GS AH +ML ++
Sbjct: 4 SMSASEEEAAKEKKLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQG 63
Query: 72 IIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSR 131
II ++D++ I+ L +IE +IE GK E + + ED+HMN E+ L IG +KLHT RSR
Sbjct: 64 IITDEDRDSILDGLDEIEKEIEAGKFEWRPDREDVHMNNEARLTELIGEPAKKLHTARSR 123
Query: 132 NDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYL 191
NDQV D RL+ R I + K + L LA+ + ++PG+TH Q AQP+ L H+L
Sbjct: 124 NDQVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWL 183
Query: 192 LAYASMFRRDIERLLDCRRRVNVNPLGSAAL-GAPHTTTN-ATAPELGLDSPRGDSLESI 249
L++ RD RL+DCR RVN PLGS AL G TA +LG +P +S++++
Sbjct: 184 LSHVEQLERDAGRLVDCRPRVNFCPLGSCALAGTGLPIDRFMTAKDLGFTAPMRNSIDAV 243
Query: 250 WRPGFTIE 257
F +E
Sbjct: 244 SDRDFVLE 251
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 208 bits (531), Expect = 3e-66
Identities = 73/205 (35%), Positives = 101/205 (49%), Gaps = 11/205 (5%)
Query: 53 YREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIES 112
R D+ AH L E ++ ++ E I+ L +I I +VE + M +E
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEE 60
Query: 113 ELIRRIGN-VGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHH 171
L R G G +HTGRS ND V LRL R + L+ L + L A+ HK
Sbjct: 61 VLAERAGELNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDT 120
Query: 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNA 231
+MPG TH Q AQP +LGH L A+A+ RD+ERL + +R+NV PLG A+G T NA
Sbjct: 121 VMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGGGAVG---TGANA 177
Query: 232 -------TAPELGLDSPRGDSLESI 249
A LG P +S +++
Sbjct: 178 PPIDRERVAELLGFFGPAPNSTQAV 202
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 201 bits (513), Expect = 5e-62
Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 7/229 (3%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEAL 62
Query: 86 KDIEYDIEHG-KVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
++ ++ + L + EDIH +E +LI ++G++G+KLHTGRSRNDQV DL+L+ +
Sbjct: 63 NELLEEVRANPQQILASDAEDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCK 122
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
+ L+ L L A+ ++ +MPG+TH Q AQP++ H+ LAY M RD R
Sbjct: 123 DQVAELLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 182
Query: 205 LLDCRRRVNVNPLGSAALGAPHTTTN----ATAPELGLDSPRGDSLESI 249
L D +R++V+PLGS AL T A LG S +SL+S+
Sbjct: 183 LQDALKRLDVSPLGSGALAG--TAYEIDREQLAGWLGFASATRNSLDSV 229
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 176 bits (449), Expect = 2e-51
Identities = 87/235 (37%), Positives = 136/235 (57%), Gaps = 3/235 (1%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ + +QFN+S+ D L +DI GSIA L ++ E++++ + L
Sbjct: 3 LWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELAL 62
Query: 86 KDIEYDI-EHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
+++ ++ E + L + EDIH +E +LI ++G++G+KLHTGRSRNDQV DL+L+ R
Sbjct: 63 NELKLEVMEDPEQILLSDAEDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCR 122
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
+ + L+ L +Q+ +A+ H+ ++PG+TH Q AQP++ H+ LAY MF RD R
Sbjct: 123 QQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSR 182
Query: 205 LLDCRRRVNVNPLGSAALG--APHTTTNATAPELGLDSPRGDSLESIWRPGFTIE 257
L D R++ PLGS AL A A A LG +SL+S+ +E
Sbjct: 183 LEDALTRLDTCPLGSGALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVME 237
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 126 bits (319), Expect = 8e-35
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 10/210 (4%)
Query: 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDI 88
G F + + F + + L EDI G A + N++ +++ I+K L ++
Sbjct: 1 GRFTVPADALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAIIKALDEV 60
Query: 89 EYDI-EHGKVELKVELEDIH----MNIE---SELIRRIGNVGRKLHTGRSRNDQVVLDLR 140
+ LKV E MN+ EL+ ++ + K+HTG+S NDQV LR
Sbjct: 61 AEEGKADDAFPLKVIQEGSGTAVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALR 120
Query: 141 LFTRRNIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFR 199
L + + L+ L + L A+ + PG TH Q A P++LG L YA
Sbjct: 121 LALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALT 180
Query: 200 RDIERLLDCRRRVNVNPLGSAAL-GAPHTT 228
RD+ERL R+ V PLG G
Sbjct: 181 RDLERLKQLLPRILVEPLGGGTAVGTGLNA 210
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 103 bits (260), Expect = 7e-27
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 108 MNIESELIRRIGNVGRKLH------TGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQL 161
+E L R G + LH GRS ND LRL R + L+ LL + L
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDAL 73
Query: 162 TRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCR 209
A+ HK +MPG TH Q AQP++LG+ L A+A + RD+ERL +
Sbjct: 74 ALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEEAA 121
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 96.9 bits (241), Expect = 5e-23
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 9/196 (4%)
Query: 25 QLWTGCFQQ-SMNEFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIV 82
++W+G + N+F + I D+ L + +I +A+ L +R +I E+ + ++
Sbjct: 2 KIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVI 61
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLF 142
L DI +E+ ++LED+H IE+ +IRR G++ + SRN+QV DL LF
Sbjct: 62 NAL----IDIYKNGIEIDLDLEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLF 117
Query: 143 TRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDI 202
I + K+L + +K + + +PG+THF+ A P+++ Y+ S+ I
Sbjct: 118 IIDKIIEIEKILYEIIK---VIPGFNLKGRLPGYTHFRQAMPMTVNTYINYIKSILYHHI 174
Query: 203 ERLLDCRRRVNVNPLG 218
L + P G
Sbjct: 175 NNLDSFLMDLREMPYG 190
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 96.2 bits (239), Expect = 1e-22
Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 62 AHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-N 120
AH+ ML E N++ +++ + I+ LK +E +I ++ + ED+ +E + + +
Sbjct: 47 AHIVMLTEENLMKKEEAKFILHALKKVE-EIPEEQLLYTEQHEDLFFLVEHLISQEAKSD 105
Query: 121 VGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQ 180
+H GRSRND V R+ RR + L++ L + + +LA HK IMP +TH Q
Sbjct: 106 FVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQ 165
Query: 181 FAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAAL 222
AQP + GHY LA +RD+ER+ + +N +P+G+AAL
Sbjct: 166 PAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAAL 207
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 80.3 bits (198), Expect = 5e-17
Identities = 59/197 (29%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 62 AHVTMLGERNIID-EQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
AH+ MLG+ I+ E+ + L+ + L+D + + + ++M E+ LI R+
Sbjct: 447 AHLVMLGDTGIVAPERARPLLDAHRRLRDAGF----APLLARPAPRGLYMLYEAYLIERL 502
Query: 119 G-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFT 177
G +VG L T RSRND +L R L + L A + +P ++
Sbjct: 503 GEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYS 562
Query: 178 HFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNATAPE-- 235
+Q A P SLGHYLLA R+ L ++V PLG+ A G TT PE
Sbjct: 563 QYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGG---TTFPIDPEFV 619
Query: 236 ---LGLDSPRGDSLESI 249
LG + P +SL+++
Sbjct: 620 ARLLGFEQPAPNSLDAV 636
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 74.5 bits (184), Expect = 2e-15
Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 12/184 (6%)
Query: 67 LGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKL 125
E +I ++ E I E D E K D+ + L + G + G +
Sbjct: 25 QAELGLIPKEAAEEIRAAADVFEIDAERIAEIEKETGHDV-IAFVYALAEKCGEDAGEYV 83
Query: 126 HTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183
H G + D + D L L R + ++ L + L +LA HK M G TH Q A
Sbjct: 84 HFGATSQD--INDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHAL 141
Query: 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLG------SAALGAPHTTTNATAPELG 237
P + G +A+ R +ERL + R RV V + ++ A +LG
Sbjct: 142 PTTFGKKFAVWAAELLRHLERLEEARERVLVGGISGAVGTHASLGPKGPEVEERVAEKLG 201
Query: 238 LDSP 241
L P
Sbjct: 202 LKVP 205
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 67.2 bits (165), Expect = 6e-13
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 22/157 (14%)
Query: 67 LGERNIIDEQDKELI-------VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG 119
+ +I + E I V+ +K+IE + +H D+ + + + G
Sbjct: 31 WAKLGVIPAEAAEEIRKKAKFDVERVKEIEAETKH----------DV-IAFVTAIAEYCG 79
Query: 120 NVGRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFT 177
GR +H G + +D V+D L L R + ++K L + ++ L + A HK +M G T
Sbjct: 80 EAGRYIHFGLTSSD--VVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRT 137
Query: 178 HFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214
H A+P + G + + F+R +ERL + R R+ V
Sbjct: 138 HGIHAEPTTFGLKFALWYAEFKRHLERLKEARERILV 174
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 66.5 bits (163), Expect = 1e-12
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 128 GRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISL 187
+S ND +R+ ++ L+ + A H I G T Q A PI+L
Sbjct: 138 AQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITL 197
Query: 188 GHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA----LGAPHTTTNATAPEL 236
G AYA +RD +R+ R + LG A L A L
Sbjct: 198 GQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNADPEYIERVVKHL 250
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 64.7 bits (158), Expect = 5e-12
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 21/172 (12%)
Query: 69 ERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTG 128
+ + D I K+IE H D+ + L + G G +H G
Sbjct: 50 AKANFTDVDLARI----KEIEAVTRH----------DV-KAVVYALKEKCGAEGEFIHFG 94
Query: 129 RSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLG 188
+ ND V L L R ++ ++ L + +L LA +K +M G TH Q A+P +LG
Sbjct: 95 ATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLG 154
Query: 189 HYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNATAPELGLDS 240
+A +R +ERLL + R+ V GA T+A A L +
Sbjct: 155 KKFALWADEMKRQLERLLQAKERIKVG----GISGA--VGTHAAAYPLVEEV 200
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 63.4 bits (155), Expect = 1e-11
Identities = 45/131 (34%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 119 GNVGRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGF 176
G +H G + D ++D L L R + L + L + L RLA H+ M G
Sbjct: 87 DAAGEYVHWGATTQD--IIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGR 144
Query: 177 THFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA-----LGA-PHTTTN 230
TH Q A PI+ G + + S R ERL + R RV V G AA LG
Sbjct: 145 THLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLASLGDQGLAVQE 204
Query: 231 ATAPELGLDSP 241
A A ELGL P
Sbjct: 205 ALAAELGLGVP 215
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 62.6 bits (153), Expect = 3e-11
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 72 IIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH--MNIESELIRRIGN-VGRKLHTG 128
+I + I E+D+E K ++E E H + L ++G +H G
Sbjct: 39 VIPAEAAAEIDAAAAFAEFDLERIK---EIEAETGHDVKALVRALAEKVGEEASEYVHFG 95
Query: 129 RSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPIS 186
+ D ++D L L + + ++ L ++ L LA HK M G TH Q A+P +
Sbjct: 96 ATSQD--IIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTT 153
Query: 187 LGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTTTNATAPELGLDS 240
G + + R +ERL + R+ V +G A T A +LG +
Sbjct: 154 FGKKFANWLAELLRHLERLEEAEERIIVGKIGGA------VGTLAALGDLGAEV 201
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 56.4 bits (137), Expect = 3e-09
Identities = 28/96 (29%), Positives = 42/96 (43%)
Query: 128 GRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISL 187
+S ND LRL ++ L+ L + A+ + G T Q A P++L
Sbjct: 133 SQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTL 192
Query: 188 GHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
G AYA+ +RD R+ R R+ LG A+G
Sbjct: 193 GQEFGAYATALKRDRARIYKARERLREVNLGGTAIG 228
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 54.4 bits (132), Expect = 1e-08
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 149 ALIKLLLDTVKQLT----RLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
AL++ LL ++QL A+ + G TH Q A P++LG YA+ RDI R
Sbjct: 150 ALLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIAR 209
Query: 205 LLDCRRRVNVNPLGSAALG 223
+ R+ LG A+G
Sbjct: 210 IEAALERLRELNLGGTAVG 228
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 50.4 bits (121), Expect = 4e-07
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 128 GRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISL 187
+S ND R+ ++++ LI L D ++ R A+ + G T Q A P++L
Sbjct: 139 SQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTL 198
Query: 188 GHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
G A+A + DI+R+ + LG A+G
Sbjct: 199 GQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIG 234
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 50.0 bits (120), Expect = 4e-07
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 118 IGNVGRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPG 175
+G+ GR +H G + +D VLD L L ++ L++ L D ++ + A+ H++ +M G
Sbjct: 81 VGDAGRYIHLGMTSSD--VLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIG 138
Query: 176 FTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
+H A+PI+ G L + + R+ ERL+ R + V + S A+G
Sbjct: 139 RSHGIHAEPITFGFKLAGWLAETLRNRERLVRLREDIAVGQI-SGAVG 185
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 49.7 bits (120), Expect = 5e-07
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 149 ALIKLLLDTVKQLTRL-------AQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRD 201
AL+ L + L +L A+ + G T Q A P++LG AYA D
Sbjct: 154 ALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAED 213
Query: 202 IERLLDCRRRV-NVNPLGSAALG 223
+RL + VN LG+ A+G
Sbjct: 214 RKRLYRAAELLREVN-LGATAIG 235
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 46.9 bits (112), Expect = 4e-06
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 20/158 (12%)
Query: 67 LGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED-IHMNIESELIRRI-----GN 120
E +I E+ E I + ++ K+E E+E IH +I + +++ + G+
Sbjct: 39 EAELGLIPEEAAEEINRKA-----STKYVKLERVKEIEAEIHHDIMA-VVKALSEVCEGD 92
Query: 121 VGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTR----LAQLHKHHIMPGF 176
G +H G + ND ++D T +K +++L + +K+L A+ HK+ + G
Sbjct: 93 AGEYVHFGATSND--IIDTA--TALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGR 148
Query: 177 THFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214
TH Q A P + G +AS +R +ERL + RV V
Sbjct: 149 THGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVCV 186
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 46.4 bits (110), Expect = 7e-06
Identities = 18/95 (18%), Positives = 39/95 (41%)
Query: 129 RSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLG 188
+S ND R+ ++ L+ + + A+ + G T Q A P++LG
Sbjct: 137 QSTNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLG 196
Query: 189 HYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
A++ + +++ + + LG+ A+G
Sbjct: 197 QEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIG 231
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 46.2 bits (110), Expect = 7e-06
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 122 GRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHF 179
R +H G + D ++D L L R + L L L LA H+ M G T
Sbjct: 99 ARYVHWGATSQD--IIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWL 156
Query: 180 QFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA-----LG--APHTTTNAT 232
Q A P++LG + R +RL R R V G AA LG A A
Sbjct: 157 QQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGGAAGTLASLGEQAL-PVAQAL 215
Query: 233 APELGLDSP 241
A EL L P
Sbjct: 216 AAELQLALP 224
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 46.0 bits (110), Expect = 9e-06
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 149 ALIKLLLDTVKQLT----RLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
AL + LL +K L A K + G TH Q A P++LG YA+ I R
Sbjct: 151 ALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIAR 210
Query: 205 LLDCRRRVNVNPLGSAALG 223
+ R+ LG A+G
Sbjct: 211 IEAALPRLYELALGGTAVG 229
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 44.4 bits (105), Expect = 3e-05
Identities = 38/137 (27%), Positives = 50/137 (36%), Gaps = 7/137 (5%)
Query: 113 ELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHH 171
L + + R +H G + D + L L R + L+ L L LA H+
Sbjct: 80 ALRKAVAGEAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDT 139
Query: 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA--LGAPHT-- 227
M G T Q A P + G + + R +RL R R G AA L A T
Sbjct: 140 PMTGRTLLQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAALGTRG 199
Query: 228 --TTNATAPELGLDSPR 242
A A LGL P
Sbjct: 200 GAVAAALAARLGLPLPA 216
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 43.9 bits (105), Expect = 4e-05
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 147 IKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLL 206
+ AL L L A+ + G TH Q A P++LG YA+ IER+
Sbjct: 161 LPALEHL----RDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIE 216
Query: 207 DCRRRVNVNPLGSAALG 223
+ LG A+G
Sbjct: 217 AALPHLYELALGGTAVG 233
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 43.1 bits (102), Expect = 8e-05
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 138 DLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYAS- 196
DL + R + ++ L + +L A +K GFTH+Q AQ ++G +
Sbjct: 104 DL-IQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQD 162
Query: 197 --MFRRDIERLLD 207
M R++ERL D
Sbjct: 163 LLMDLRNLERLRD 175
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 41.1 bits (97), Expect = 3e-04
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 143 TRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDI 202
R I AL L+ K L A+ + G TH Q A P++LG YA+ +
Sbjct: 156 VNRLIPALKHLI----KTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHAL 211
Query: 203 ERLLDCRRRVNVNPLGSAALG 223
ER+ + +G A+G
Sbjct: 212 ERIEASLPHLYELAIGGTAVG 232
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 40.0 bits (93), Expect = 9e-04
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 129 RSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLG 188
+S ND + + T ++ L++ + A+ H I G TH Q A PI LG
Sbjct: 145 QSTNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLG 204
Query: 189 HYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
AY+ + RD++R+ R+ + +G+ A+G
Sbjct: 205 QEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVG 239
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 39.5 bits (92), Expect = 0.001
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 6/160 (3%)
Query: 69 ERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTG 128
E II I + +E + E++ E++ M + L + +H G
Sbjct: 41 EYGIIPRDAFLDIKNAVDSNSVRLERVR-EIESEIKHDVMALVEALSEQCSAGKNYVHFG 99
Query: 129 RSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLG 188
+ ND L + + + + ++ L +L +K M G TH Q A PI+ G
Sbjct: 100 VTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFG 159
Query: 189 HYLLAYASMFRRDIERLLDCRRRVN----VNPLGS-AALG 223
Y R ++RL + R + P+G+ AALG
Sbjct: 160 LKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALG 199
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 143 TRRNIKALIKLLLDTVKQLTRL-------AQLHKHHIMPGFTHFQFAQPISLGHYLLAYA 195
T +I A++ + + L L ++ H + G TH Q A P++LG Y
Sbjct: 143 TAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYV 202
Query: 196 SMFRRDIERLLDCRRRVNVNPLGSAALG 223
+ +ER+ + +G A+G
Sbjct: 203 AQLEHGLERIAYSLPHLYELAIGGTAVG 230
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 37.0 bits (86), Expect = 0.008
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 72 IIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELI-------RRIGNVGRK 124
+I + D E I K K +DI +++I + +LI +G R
Sbjct: 39 LIPDSDCEKICKNAK---FDIA--------RIDEIEKTTKHDLIAFLTSVSESLGEESRF 87
Query: 125 LHTGRSRNDQVVLDLRLFTRRNIKALI---KLLLDTVKQLTRLAQLHKHHIMPGFTHFQF 181
+H G + +D + + L R ++K +I K L++ +K R A HK +M G +H
Sbjct: 88 VHYGMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIK--KR-ALEHKDTLMVGRSHGIH 144
Query: 182 AQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG----APHTTTNATAPELG 237
+PI+ G L + +R ++ L ++V + S A+G AP ELG
Sbjct: 145 GEPITFGLVLAIWYDEIKRHLKALEHTMEVISVGKI-SGAMGNFAHAPLELEELVCEELG 203
Query: 238 L 238
L
Sbjct: 204 L 204
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 32.7 bits (75), Expect = 0.14
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 113 ELIRRI-----GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLL---LDTVKQ-LTR 163
L+R++ +H G + D V+D L R +KA ++L L + L
Sbjct: 85 ALVRQLRAAVGEEAAAHVHFGATSQD--VIDTSLMLR--LKAASEILAARLGALIARLDA 140
Query: 164 LAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA-- 221
L + + G T Q A PI++ L ++ + R +RL R V G AA
Sbjct: 141 LEATFGQNALMGHTRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGT 200
Query: 222 ---LGAPHTTTNAT-APELGL-DSPR 242
LG A A LGL D+P+
Sbjct: 201 LEKLGGKAAAVRARLAKRLGLEDAPQ 226
>gnl|CDD|235443 PRK05395, PRK05395, 3-dehydroquinate dehydratase; Provisional.
Length = 146
Score = 30.8 bits (71), Expect = 0.35
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
TL DIE +E EL VELE N E ELI RI
Sbjct: 26 TTLADIEALLEEEAAELGVELEFFQSNHEGELIDRI 61
>gnl|CDD|226049 COG3518, COG3518, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 157
Score = 30.1 bits (68), Expect = 0.59
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 199 RRDIERLLDCRRRVNVNPLGSAALGAPHTTTNATAPELGLDSPRGDSLESI 249
RRD+ERLL+ R GSA L A + + GL G +L
Sbjct: 40 RRDLERLLNTRA-------GSARLLARYPEAARSVLNYGLPDLSGATLSLF 83
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 31.1 bits (71), Expect = 0.64
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 118 IGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQ----LTRLAQLHKHHIM 173
+G R +H G + +D VLD L + + LLL + + L + A HK
Sbjct: 84 VGPDARFVHQGMTSSD--VLDTCLNVQ--LVRAADLLLADLDRVLAALKKRAFEHKDTPT 139
Query: 174 PGFTHFQFAQPISLGHYL-LAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
G +H A+P + G L YA F R+ ERL+ R + + S A+G
Sbjct: 140 IGRSHGIHAEPTTFGLKLARFYAE-FARNRERLVAAREEIATCAI-SGAVG 188
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 30.8 bits (70), Expect = 0.73
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 169 KHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGAPHTT 228
K + G TH Q A P++LG YA+ + + R+ + + L A G
Sbjct: 171 KDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRV-----QCTLPRLYELAQG----- 220
Query: 229 TNATAPELGLDSPRG 243
TA GL++ +G
Sbjct: 221 --GTAVGTGLNTKKG 233
>gnl|CDD|223828 COG0757, AroQ, 3-dehydroquinate dehydratase II [Amino acid
transport and metabolism].
Length = 146
Score = 29.5 bits (67), Expect = 0.84
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVL 137
TL+DIE D+E +L VE+E N E ELI I H R + +V+
Sbjct: 25 TTLEDIEADLEEEAAKLGVEVEFRQSNHEGELIDWI-------HEARGKAGDIVI 72
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 28.9 bits (66), Expect = 2.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 158 VKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERL 205
+ L LA + M TH Q A P +LG + A R +++L
Sbjct: 151 IDALKELAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQL 198
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 28.9 bits (65), Expect = 2.6
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 33 QSMNEFLQQFNESISVDEVLYRE--------DIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+ ++ IS+ Y E ++ L ++ + E DK+ +K
Sbjct: 298 EDEKPLFLKWKLPISIVRETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEKEIDKDAKIKD 357
Query: 85 LKDIEYDIEHGKVELKVE---LEDI 106
K + +E+GKV L+V E+I
Sbjct: 358 EKVLHERVENGKVRLRVLYVVEENI 382
>gnl|CDD|130160 TIGR01088, aroQ, 3-dehydroquinate dehydratase, type II. This model
specifies the type II enzyme. The type I enzyme, often
found as part of a multifunctional protein, is described
by TIGR01093 [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 141
Score = 28.1 bits (63), Expect = 3.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
TL++I IE +L VELE N E +LI +I
Sbjct: 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKI 59
>gnl|CDD|235740 PRK06203, aroB, 3-dehydroquinate synthase; Reviewed.
Length = 389
Score = 28.7 bits (65), Expect = 3.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 142 FTRRNIKALIKLLLDTVKQLT-RLAQLHKHHIMPGFTHFQF--AQPISLGHY 190
+ + AL + +++L R A+LH HI G F+F ++P+ GH+
Sbjct: 215 WLEAHAAALAARDPEAMEELIYRCAELHLEHIAGGGDPFEFGSSRPLDFGHW 266
>gnl|CDD|173957 cd08198, DHQS-like2, Dehydroquinate synthase (DHQS)-like. DHQS
catalyzes the conversion of DAHP to DHQ in shikimate
pathway for aromatic compounds synthesis.
Dehydroquinate synthase-like proteins. Dehydroquinate
synthase (DHQS) catalyzes the conversion of
3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds. The activity
of DHQS requires NAD as cofactor. Proteins of this
family share sequence similarity and functional motifs
with that of dehydroquinate synthase, but the specific
function has not been characterized.
Length = 369
Score = 28.4 bits (64), Expect = 3.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 142 FTRRNIKALIKLLLDTVKQLT-RLAQLHKHHIMPGFTHFQF--AQPISLGHY 190
+ N AL D +++L R A+LH HI G F+ A+P+ GH+
Sbjct: 203 WLEENAAALASFDPDVMEELIRRCAELHLEHIAAGGDPFELGSARPLDFGHW 254
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota. This model
describes the Drosophila protein Pelota, the budding
yeast protein DOM34 which it can replace, and a set of
closely related archaeal proteins. Members contain a
proposed RNA binding motif. The meiotic defect in pelota
mutants may be a complex result of a protein translation
defect, as suggested in yeast by ribosomal protein
RPS30A being a multicopy suppressor and by an altered
polyribosome profile in DOM34 mutants rescued by RPS30A.
This family is homologous to a family of peptide chain
release factors. Pelota is proposed to act in protein
translation [Protein synthesis, Translation factors].
Length = 351
Score = 28.6 bits (64), Expect = 3.7
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 70 RNIIDEQDKELIVKT-----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG 119
II++ D E L I D V+L +E+E + ++++E +R G
Sbjct: 29 YQIIEKGDVEFAFTKRRTQDLDKIRSDKSKDTVKLGIEVESVEFDMKTERLRYKG 83
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Diaminopimelate Decarboxylase.
Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20)
participates in the last step of lysine biosynthesis. It
converts meso-2,6-diaminoheptanedioate to L-lysine. It
is a fold type III PLP-dependent enzyme that contains an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. DapDC exists as homodimers with
active sites that lie at the interface between the TIM
barrel domain of one subunit and the beta-sandwich
domain of the other subunit. Homodimer formation and the
presence of the PLP cofactor are required for catalytic
activity.
Length = 373
Score = 28.2 bits (64), Expect = 4.1
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESE-LIRRIGNVGRKLHTGR 129
K+ +++E +E G + +N++S + R+G + +L G
Sbjct: 82 KSDEELELALELG---------ILRINVDSLSELERLGEIAPELGKGA 120
>gnl|CDD|189894 pfam01220, DHquinase_II, Dehydroquinase class II.
Length = 140
Score = 27.4 bits (62), Expect = 4.1
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124
TL DIE + EL VELE N E ELI I
Sbjct: 25 TTLADIEARLRELAAELGVELEFFQSNHEGELIDWIHEARGD 66
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 28.3 bits (63), Expect = 5.1
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 161 LTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMF---RRDIERLLD--CRRRVNVN 215
L + H + G TH A PI+ G L A+ + R I L C
Sbjct: 169 LAEQSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGT 228
Query: 216 PLGSAALGAPHTTTNATAPEL 236
+G+ L APH A A EL
Sbjct: 229 AVGT-GLNAPHGFAEAIAAEL 248
>gnl|CDD|217372 pfam03105, SPX, SPX domain. We have named this region the SPX
domain after (SYG1, Pho81 and XPR1). This 180 residue
length domain is found at the amino terminus of a
variety of proteins. In the yeast protein SYG1, the
N-terminus directly binds to the G- protein beta subunit
and inhibits transduction of the mating pheromone
signal. This finding suggests that all the members of
this family are involved in G-protein associated signal
transduction. The N-termini of several proteins involved
in the regulation of phosphate transport, including the
putative phosphate level sensors PHO81 from
Saccharomyces cerevisiae and NUC-2 from Neurospora
crassa, are also members of this family. The SPX domain
of S. cerevisiae low-affinity phosphate transporters
Pho87 and Pho90 auto-regulates uptake and prevents
efflux. This SPX dependent inhibition is mediated by the
physical interaction with Spl2 NUC-2 contains several
ankyrin repeats pfam00023. Several members of this
family are annotated as XPR1 proteins: the xenotropic
and polytropic retrovirus receptor confers
susceptibility to infection with murine leukaemia
viruses (MLV). The similarity between SYG1, phosphate
regulators and XPR1 sequences has been previously noted,
as has the additional similarity to several predicted
proteins, of unknown function, from Drosophila
melanogaster, Arabidopsis thaliana, Caenorhabditis
elegans, Schizosaccharomyces pombe, and Saccharomyces
cerevisiae. In addition, given the similarities between
XPR1 and SYG1 and phosphate regulatory proteins, it has
been proposed that XPR1 might be involved in G-protein
associated signal transduction and may itself function
as a phosphate sensor.
Length = 176
Score = 27.4 bits (61), Expect = 5.4
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 98 ELKVELEDI---HMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLL 154
L ELE + + E+EL+ R+ + ++L R D+ + +N+ + L
Sbjct: 68 ALDKELEKVNSFYKEKEAELLERLEELEKQLEELEERRDETSSAKSSPSDKNLLKAFEEL 127
Query: 155 LDTVKQLTRLAQL 167
+ +L R QL
Sbjct: 128 KKALLELYRELQL 140
>gnl|CDD|148013 pfam06152, Phage_min_cap2, Phage minor capsid protein 2. Family of
related phage minor capsid proteins.
Length = 361
Score = 27.8 bits (62), Expect = 5.9
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRN--DQVVL-------DLRLFTRRNIKALIKL 153
+ DI+ +E +L + R+L T +S D V +L L ++NIK + K
Sbjct: 15 VVDIYSKLELDLFDNM---IRRLKTRKSLQLADNVEQWQIEKLNELGLLNKQNIKLIAKY 71
Query: 154 LLDTVKQLTRLAQ 166
+ +TR+ +
Sbjct: 72 TGVAEEAITRVIK 84
>gnl|CDD|238262 cd00466, DHQase_II, Dehydroquinase (DHQase), type II.
Dehydroquinase (or 3-dehydroquinate dehydratase)
catalyzes the reversible dehydration of 3-dehydroquinate
to form 3-dehydroshikimate. This reaction is part of two
metabolic pathways: the biosynthetic shikimate pathway
and the catabolic quinate pathway. There are two types
of DHQases, which are distinct from each other in amino
acid sequence and three-dimensional structure. Type I
enzymes usually catalyze the biosynthetic reaction using
a syn elimination mechanism. In contrast, type II
enzymes, found in the quinate pathway of fungi and in
the shikimate pathway of many bacteria, are dodecameric
enzymes that employ an anti elimination reaction
mechanism.
Length = 140
Score = 27.0 bits (61), Expect = 6.4
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 83 KTLKDIEYDI-EHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVL 137
TL DIE + E EL VE+E N E ELI I H R D +++
Sbjct: 24 TTLADIEALLRELAA-ELGVEVEFFQSNHEGELIDWI-------HEARDGADGIII 71
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 27.6 bits (62), Expect = 6.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 81 IVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSR 131
I++ L ++ +D + G++ L EL D MN+ ELI+ GRK R
Sbjct: 60 ILR-LIEVLFDRKTGRLALVFELMD--MNL-YELIK-----GRKRPLPEKR 101
>gnl|CDD|202716 pfam03646, FlaG, FlaG protein. Although important for flagella
the exact function of this protein is unknown.
Length = 107
Score = 26.0 bits (58), Expect = 8.4
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 6 PEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESI--SVDE 50
E E ++ +EL++ + +N+FLQ N ++ SVDE
Sbjct: 22 EEAEETAAEEKEVSKEELEEA-----VEKLNKFLQSLNTNLEFSVDE 63
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 27.6 bits (61), Expect = 8.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 76 QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
Q+ + +++ +DIE ++E K ELK L+ + + E RI
Sbjct: 237 QENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERI 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.401
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,724,822
Number of extensions: 1363106
Number of successful extensions: 1500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1487
Number of HSP's successfully gapped: 79
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)