Query psy17728
Match_columns 231
No_of_seqs 161 out of 1403
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 21:27:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 6.4E-59 1.4E-63 423.3 20.6 205 25-229 4-208 (459)
2 PLN02646 argininosuccinate lya 100.0 1.6E-54 3.6E-59 403.2 21.5 206 24-229 16-221 (474)
3 KOG1316|consensus 100.0 1.2E-53 2.6E-58 371.5 18.2 204 25-228 7-210 (464)
4 PRK06389 argininosuccinate lya 100.0 2.3E-52 4.9E-57 382.4 18.6 196 26-228 3-200 (434)
5 TIGR00838 argH argininosuccina 100.0 4.3E-51 9.4E-56 379.6 21.0 204 26-229 1-205 (455)
6 PRK00855 argininosuccinate lya 100.0 1.4E-50 3E-55 376.5 21.7 205 25-229 5-209 (459)
7 PRK04833 argininosuccinate lya 100.0 2.4E-50 5.1E-55 374.2 21.1 205 25-229 2-207 (455)
8 PRK12425 fumarate hydratase; P 100.0 8.1E-49 1.8E-53 364.0 21.0 215 10-229 2-236 (464)
9 PRK06705 argininosuccinate lya 100.0 9.2E-49 2E-53 366.9 20.7 202 25-228 10-213 (502)
10 PRK14515 aspartate ammonia-lya 100.0 7E-48 1.5E-52 358.3 22.2 217 8-229 9-244 (479)
11 PRK00485 fumC fumarate hydrata 100.0 4.7E-48 1E-52 359.6 20.9 214 10-228 4-237 (464)
12 PRK12308 bifunctional arginino 100.0 4.2E-48 9.2E-53 371.2 21.0 204 26-229 3-207 (614)
13 PRK12273 aspA aspartate ammoni 100.0 8E-48 1.7E-52 358.4 21.6 215 9-228 4-239 (472)
14 cd01357 Aspartase Aspartase. T 100.0 3.9E-47 8.5E-52 352.1 21.3 213 11-228 1-232 (450)
15 PRK13353 aspartate ammonia-lya 100.0 7.6E-47 1.6E-51 352.0 21.5 216 8-228 3-237 (473)
16 cd01359 Argininosuccinate_lyas 100.0 6.9E-46 1.5E-50 343.2 20.0 183 47-229 3-185 (435)
17 PF00206 Lyase_1: Lyase; Inte 100.0 1.8E-46 3.9E-51 333.6 14.4 201 29-229 1-210 (312)
18 cd01362 Fumarase_classII Class 100.0 1.7E-45 3.7E-50 341.4 21.4 213 11-228 1-233 (455)
19 TIGR00979 fumC_II fumarate hyd 100.0 1.7E-45 3.6E-50 341.6 21.1 213 11-228 2-234 (458)
20 cd01334 Lyase_I Lyase class I 100.0 2.3E-45 4.9E-50 328.2 19.8 174 54-227 2-176 (325)
21 TIGR00839 aspA aspartate ammon 100.0 8.4E-45 1.8E-49 337.3 21.2 213 11-228 1-235 (468)
22 cd01596 Aspartase_like asparta 100.0 1.6E-44 3.4E-49 334.5 21.3 213 11-228 1-232 (450)
23 PLN00134 fumarate hydratase; P 100.0 3.5E-44 7.6E-49 332.8 21.1 201 23-228 8-229 (458)
24 cd01595 Adenylsuccinate_lyase_ 100.0 3.7E-45 8E-50 333.2 14.2 177 51-229 9-187 (381)
25 cd01360 Adenylsuccinate_lyase_ 100.0 1.5E-44 3.3E-49 329.6 17.4 186 35-229 4-189 (387)
26 TIGR02426 protocat_pcaB 3-carb 100.0 2E-44 4.4E-49 323.5 17.9 194 28-229 3-197 (338)
27 PRK02186 argininosuccinate lya 100.0 6.9E-44 1.5E-48 354.3 20.5 193 36-229 419-614 (887)
28 cd01597 pCLME prokaryotic 3-ca 100.0 1.1E-43 2.3E-48 328.7 16.1 194 27-229 2-197 (437)
29 PRK05975 3-carboxy-cis,cis-muc 100.0 3.1E-43 6.8E-48 316.9 18.2 198 24-229 8-206 (351)
30 PRK08470 adenylosuccinate lyas 100.0 3.3E-43 7.2E-48 325.4 17.0 189 30-229 4-192 (442)
31 PRK06390 adenylosuccinate lyas 100.0 5.8E-43 1.3E-47 324.7 15.7 196 26-229 5-200 (451)
32 PRK08540 adenylosuccinate lyas 100.0 1.1E-42 2.4E-47 322.8 16.0 194 26-229 5-201 (449)
33 PRK07492 adenylosuccinate lyas 100.0 3.3E-42 7.2E-47 317.9 15.1 191 30-228 4-194 (435)
34 TIGR00928 purB adenylosuccinat 100.0 2.6E-41 5.5E-46 312.7 17.2 191 28-229 2-195 (435)
35 PRK07380 adenylosuccinate lyas 100.0 1.4E-41 3.1E-46 313.4 15.1 188 30-228 4-191 (431)
36 PRK09053 3-carboxy-cis,cis-muc 100.0 2.4E-40 5.3E-45 307.3 16.5 197 25-229 6-206 (452)
37 COG0015 PurB Adenylosuccinate 100.0 2.6E-40 5.7E-45 301.8 16.1 195 28-230 2-197 (438)
38 cd03302 Adenylsuccinate_lyase_ 100.0 1.1E-39 2.3E-44 301.7 15.8 188 28-225 2-190 (436)
39 PRK09285 adenylosuccinate lyas 100.0 2.7E-38 5.9E-43 293.1 14.4 189 25-222 10-212 (456)
40 cd01598 PurB PurB_like adenylo 100.0 2.2E-37 4.9E-42 284.5 12.9 177 40-225 3-193 (425)
41 PLN02848 adenylosuccinate lyas 100.0 8.6E-37 1.9E-41 283.0 15.5 192 26-226 14-219 (458)
42 COG0114 FumC Fumarase [Energy 100.0 3.1E-35 6.7E-40 261.0 18.5 210 10-228 3-236 (462)
43 COG1027 AspA Aspartate ammonia 100.0 4.3E-33 9.3E-38 246.8 17.7 215 9-228 3-238 (471)
44 KOG1317|consensus 99.9 3.7E-27 7.9E-32 204.9 15.0 213 9-229 27-262 (487)
45 KOG2700|consensus 99.9 5.5E-23 1.2E-27 185.0 7.8 198 26-228 9-206 (481)
46 cd01594 Lyase_I_like Lyase cla 99.9 6.8E-22 1.5E-26 167.8 14.0 99 110-208 16-120 (231)
47 PF09851 SHOCT: Short C-termin 64.0 18 0.00038 20.8 3.8 26 60-85 4-29 (31)
48 PF10925 DUF2680: Protein of u 59.0 46 0.00099 22.3 5.7 35 57-91 17-51 (59)
49 KOG2700|consensus 54.8 91 0.002 29.5 8.7 89 108-198 160-256 (481)
50 KOG4797|consensus 50.6 60 0.0013 24.6 5.6 38 132-169 54-91 (123)
51 PF03533 SPO11_like: SPO11 hom 42.8 60 0.0013 20.1 3.8 25 192-216 9-33 (43)
52 PF07328 VirD1: T-DNA border e 38.4 77 0.0017 24.9 4.7 52 143-195 72-123 (147)
53 PF10372 YojJ: Bacterial membr 36.2 21 0.00045 24.9 1.2 60 138-197 10-69 (70)
54 CHL00180 rbcR LysR transcripti 31.2 1.9E+02 0.0042 24.8 6.9 52 166-218 44-95 (305)
55 PF07812 TfuA: TfuA-like prote 31.2 1E+02 0.0023 23.7 4.4 71 13-89 38-115 (120)
56 PF07408 DUF1507: Protein of u 29.4 1.3E+02 0.0028 22.0 4.4 34 49-87 45-78 (90)
57 PRK06390 adenylosuccinate lyas 27.2 78 0.0017 29.8 3.8 80 142-228 120-203 (451)
58 TIGR00637 ModE_repress ModE mo 27.1 2.5E+02 0.0054 20.5 5.8 52 166-217 41-97 (99)
59 PRK12683 transcriptional regul 26.7 3.1E+02 0.0067 23.7 7.4 48 166-213 41-88 (309)
60 PF01166 TSC22: TSC-22/dip/bun 26.3 20 0.00043 24.0 -0.2 36 133-168 2-37 (59)
61 TIGR02890 spore_yteA sporulati 25.7 3.5E+02 0.0077 21.7 7.8 38 192-229 61-98 (159)
62 PF09920 DUF2150: Uncharacteri 24.8 4E+02 0.0086 22.2 7.1 37 55-91 41-77 (190)
63 PRK12682 transcriptional regul 23.3 4E+02 0.0086 22.8 7.4 50 166-215 41-90 (309)
64 KOG3564|consensus 21.8 1.4E+02 0.003 28.7 4.2 69 64-138 375-445 (604)
65 TIGR03339 phn_lysR aminoethylp 21.7 2.9E+02 0.0064 22.9 6.1 51 163-214 33-83 (279)
66 PRK12684 transcriptional regul 20.9 3.9E+02 0.0084 23.1 6.9 50 165-214 40-89 (313)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-59 Score=423.28 Aligned_cols=205 Identities=49% Similarity=0.754 Sum_probs=201.6
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e 104 (231)
++|+|||.+.+++.+..|+.+..+|++|+++||.+++||++||.+.|+|+++++++|.++|.++.+++..+.|.+++..|
T Consensus 4 ~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~~~E 83 (459)
T COG0165 4 KLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDDE 83 (459)
T ss_pred CCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
|||++||+.|++++|+.|+|+|+||||||||+|+++||+|+.+..|.+.+..|+++|+++|++|.+++||||||+|+|||
T Consensus 84 DvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHlQ~AQP 163 (459)
T COG0165 84 DVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQP 163 (459)
T ss_pred cHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCcccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||||||+++|+++|.||++||.++++|++.||||+||++||+||-
T Consensus 164 vtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGagAlaGt~~~i 208 (459)
T COG0165 164 VTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPFPI 208 (459)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999984
No 2
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=1.6e-54 Score=403.23 Aligned_cols=206 Identities=46% Similarity=0.721 Sum_probs=199.3
Q ss_pred hhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccC
Q psy17728 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (231)
Q Consensus 24 ~~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (231)
+++|+|||+.++++.+..|+.+..+|.+++++||.+++||++||.+.|+||++++++|.++|+++..+...+.|++.++.
T Consensus 16 ~~~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~~~ 95 (474)
T PLN02646 16 KKLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKFEWRPDR 95 (474)
T ss_pred hhhhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcCCCCC
Confidence 36999999999988899999999999999999999999999999999999999999999999999988777889988888
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17728 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (231)
Q Consensus 104 edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 183 (231)
||+|+++|++|.+++|+.|+|||+|+|||||++|+++|++|+.+..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 96 ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~dtvmpGrTHlQ~Aq 175 (474)
T PLN02646 96 EDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQ 175 (474)
T ss_pred CchHHHHHHHHHHHhchhhCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccce
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 184 PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|||||||+++|+++|.||++||.+++++++.||||||+++||++|-
T Consensus 176 PiT~G~~l~~~~~~l~rd~~RL~~~~~r~~~~pLGgga~aGt~~~i 221 (474)
T PLN02646 176 PVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLGSCALAGTGLPI 221 (474)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999874
No 3
>KOG1316|consensus
Probab=100.00 E-value=1.2e-53 Score=371.50 Aligned_cols=204 Identities=40% Similarity=0.651 Sum_probs=201.8
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e 104 (231)
++|||||.+.+++.++.|+.|+.+|+++|+.|+.++.||+++|.+.|+|+.++.+.|.++|+.|..+|..+.|.+.+..|
T Consensus 7 KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~p~dE 86 (464)
T KOG1316|consen 7 KLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLNPNDE 86 (464)
T ss_pred hhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCceEeCCCch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
|||++.|+.|.+.+|+.++++|+||||||||.|.++||+|+++..+.-.+..|++++.++|+.+.|++||||||+|.|||
T Consensus 87 DvHtanErrL~eliG~~agKlHTgRSRNDQV~TDlRLw~r~~i~~~~~~l~~L~~~~v~rAe~~~dvlmpGYTHLQRAQp 166 (464)
T KOG1316|consen 87 DVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHLQRAQP 166 (464)
T ss_pred hhhhHHHHHHHHHHhhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeccChhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
|.|.||+.+++..|.||..||.+++.|+|.+|||+||+||+++|
T Consensus 167 vrwsH~LlSha~~l~~D~~Rl~q~~~R~n~~PLGagALAGnpl~ 210 (464)
T KOG1316|consen 167 VRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGAGALAGNPLG 210 (464)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHhccCCcccchhcCCCCC
Confidence 99999999999999999999999999999999999999999987
No 4
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.3e-52 Score=382.44 Aligned_cols=196 Identities=27% Similarity=0.454 Sum_probs=188.2
Q ss_pred hhcccccchHH-HHHHhc-ccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccC
Q psy17728 26 LWTGCFQQSMN-EFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (231)
Q Consensus 26 l~~gr~~~~~~-~~~~~f-~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (231)
+|+|||+++++ +.++.| +.+..+|.+++++||.+++||++||.+.|+||+++++.|.++|.++.. +.+.+++..
T Consensus 3 lw~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~L~~i~~----~~~~~~~~~ 78 (434)
T PRK06389 3 IWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYK----NGIEIDLDL 78 (434)
T ss_pred CcccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc----CCCcCCCCC
Confidence 89999999887 667788 999999999999999999999999999999999999999999999865 578888899
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17728 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (231)
Q Consensus 104 edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 183 (231)
||+|+++|++|++++|+.|+++|+|||||||+.|++||++|+.+..+...+..++++|+++ |.|++||||||+|+||
T Consensus 79 EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat~~RL~~r~~~~~~~~~l~~l~~~l~~~---~~dtimpGyTHlQ~Aq 155 (434)
T PRK06389 79 EDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLFIIDKIIEIEKILYEIIKVIPGF---NLKGRLPGYTHFRQAM 155 (434)
T ss_pred CchHHHHHHHHHHHhchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCceeccccccCcCc
Confidence 9999999999999999999999999999999999999999999999999999999999964 9999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 184 PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
|+|||||+++|+++|.|+++||.+++++++.||||+|+++||++|
T Consensus 156 P~TfG~~l~a~a~~L~rd~~RL~~~~~r~~~~pLGaga~~Gt~~~ 200 (434)
T PRK06389 156 PMTVNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSS 200 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCCch
Confidence 999999999999999999999999999999999999999999986
No 5
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=4.3e-51 Score=379.63 Aligned_cols=204 Identities=49% Similarity=0.734 Sum_probs=196.2
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcc
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ed 105 (231)
+|++||+.++.+.+..|+.+..+|.++++++|.+.+||++||.+.|+||++.+++|.++|+++..+...+.|++++..||
T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d 80 (455)
T TIGR00838 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGREGPFILDPDDED 80 (455)
T ss_pred CCCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCcCCCCCcCc
Confidence 59999998888888899999999999999999999999999999999999999999999999988766677888888999
Q ss_pred hhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 106 IHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 106 v~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
+|++||++|++++| +.|+|||+|+||||+++|+++|++|+.+..+.+.|..++++|.++|++|++++||||||+|+|||
T Consensus 81 ~~~~ie~~l~e~~g~~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P 160 (455)
T TIGR00838 81 IHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRAQP 160 (455)
T ss_pred HHHHHHHHHHHHhCCCccCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccccccee
Confidence 99999999999999 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|||||||++|+++|.|+++||.+++++++.||||||+++||++|.
T Consensus 161 ~T~G~~~~~~~~~L~r~~~rL~~~~~~~~~~plGg~a~aGt~~~~ 205 (455)
T TIGR00838 161 ITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPI 205 (455)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhcccCCCCCC
Confidence 999999999999999999999999999999999999999999864
No 6
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.4e-50 Score=376.53 Aligned_cols=205 Identities=54% Similarity=0.832 Sum_probs=198.3
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e 104 (231)
++|++||+.++.+.+.+|..+..+|..++++++.+.+||+.||.+.|+||+++++.|.++|+++..+...+.|++++.++
T Consensus 5 ~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~al~~i~~~~~~~~~~~~~~~~ 84 (459)
T PRK00855 5 KLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAGLDEILEEIEAGKFEFSPELE 84 (459)
T ss_pred cccccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCcccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999998776668898888999
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
|+|++||++|++++|+.++|||+|+||||+++|+++|++|+.+..+.+.|..++++|.++|++|++|+||||||+|+|||
T Consensus 85 d~~~~ie~~l~~~~g~~g~~iH~g~SrnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 164 (459)
T PRK00855 85 DIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQP 164 (459)
T ss_pred cHHHHHHHHHHHHhccccCcccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCcccee
Confidence 99999999999999987889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+|||||+++|+++|.|+++||.+++++++.|||||++++||+||.
T Consensus 165 ~T~G~~l~~~~~~L~r~~~rL~~~~~~~~~~plGgaag~gt~~~~ 209 (459)
T PRK00855 165 VTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGSAALAGTTFPI 209 (459)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcCCCCCc
Confidence 999999999999999999999999999999999999999999974
No 7
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.4e-50 Score=374.23 Aligned_cols=205 Identities=37% Similarity=0.634 Sum_probs=192.0
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcC-CceecccC
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVEL 103 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~-~~~~~~~~ 103 (231)
.+|++||+.++++....|+++..+|.++++++|+++.||+++|++.|+||+++++.|.++|+++..+...+ .+.+.+..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 81 (455)
T PRK04833 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDA 81 (455)
T ss_pred cCcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcCCcccCCCCC
Confidence 37999999987788889999999999999999999999999999999999999999999999986553222 44556788
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17728 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (231)
Q Consensus 104 edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 183 (231)
+|+|..||++|.+++|+.|+|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+||||
T Consensus 82 edv~~~ie~~L~~~~g~~g~~lH~grSrnD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTH~Q~Aq 161 (455)
T PRK04833 82 EDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSALVETAENNQDAVMPGYTHLQRAQ 161 (455)
T ss_pred chHHHHHHHHHHHHhccccCcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCccce
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 184 PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|+|||||+++|+++|.|+++||.+++++++.|||||||++||++|-
T Consensus 162 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgaA~~GT~~~~ 207 (455)
T PRK04833 162 PVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYEI 207 (455)
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCCC
Confidence 9999999999999999999999999999999999999999999874
No 8
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=8.1e-49 Score=364.05 Aligned_cols=215 Identities=16% Similarity=0.176 Sum_probs=195.8
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD 87 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~ 87 (231)
.|.|+|+.|+.+ |...+||. +|.+.+++|..+. .....+++....+.+||++||.+.|+|+++.+++|.++|++
T Consensus 2 ~r~e~d~~g~~~~p~~~~~g~----~t~ra~~nf~~~~~~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~al~e 77 (464)
T PRK12425 2 SRTETDSLGPIEVPEDAYWGA----QTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADE 77 (464)
T ss_pred CCcCcccCCCCCCcccccchH----HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 488999999997 67789988 9999999998874 55567777788999999999999999999999999999999
Q ss_pred HHhhhhcCCcee----cccCcchhhhHHHHHHHHh----C-ccCCc--------cccCCChhhHHHHHHHHHHHHHH-HH
Q psy17728 88 IEYDIEHGKVEL----KVELEDIHMNIESELIRRI----G-NVGRK--------LHTGRSRNDQVVLDLRLFTRRNI-KA 149 (231)
Q Consensus 88 i~~~~~~~~~~~----~~~~edv~~~ie~~L~~~~----g-~~~~~--------lH~G~SrnD~v~Ta~~L~lr~~~-~~ 149 (231)
|..+...+.|++ ...++|+||++|++|.+++ | +.|++ ||+|+||||+++|+++|++|+.+ ..
T Consensus 78 i~~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~ 157 (464)
T PRK12425 78 VLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQ 157 (464)
T ss_pred HHcCcccCCCCccCCCCCCcchHHHHHHHHHHHHHHHHhCcccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHH
Confidence 988877788885 2358999999987777665 5 36767 99999999999999999999999 59
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 150 LIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 150 l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++++++.+|+||||+ ||++|-
T Consensus 158 l~~~L~~l~~~L~~~A~~~~~tim~GrTHlQ~A~PiT~G~~~~a~~~~l~rd~~RL~~~~~r~~~~plGggAv-GT~~~~ 236 (464)
T PRK12425 158 LLPAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAV-GTGLNA 236 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeecccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh-cCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 998763
No 9
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=9.2e-49 Score=366.93 Aligned_cols=202 Identities=28% Similarity=0.399 Sum_probs=185.4
Q ss_pred hhhcccccchHHHHHHhcccccchhhhcc-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccC
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLY-REDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~-~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (231)
.+|++||++.+.+... |..+..++.+.+ ..-+.+..||++||.+.|+||++++++|.++|.++. +...+.+.+++.+
T Consensus 10 ~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~~~~-~~~~~~l~~~~~~ 87 (502)
T PRK06705 10 KSEGADFPGKTYVDCV-LQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVE-EIPEEQLLYTEQH 87 (502)
T ss_pred HHhcccCCCCcchhHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh-hcccCccccCCCC
Confidence 5899999999877666 777777765444 344669999999999999999999999999998773 2345667777899
Q ss_pred cchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17728 104 EDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (231)
Q Consensus 104 edv~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A 182 (231)
||+|+++|..+.++.| +.|+|+|+|+|||||++|+++|++|+.+..+...|..++++|.++|++|++|+||||||+|+|
T Consensus 88 edv~~~ie~~l~~~~G~~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~t~m~g~TH~Q~A 167 (502)
T PRK06705 88 EDLFFLVEHLISQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQPA 167 (502)
T ss_pred CchHHHHHHHHHHhcCchhhccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccc
Confidence 9999999999999998 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
||||||||+++|+++|.||++||.+++++++.||||||+++||+||
T Consensus 168 qP~T~G~~l~~~~~~l~r~~~rL~~~~~r~~~~plGgaag~gt~~~ 213 (502)
T PRK06705 168 QPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTSFP 213 (502)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhhhhccCCch
Confidence 9999999999999999999999999999999999999999999997
No 10
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=7e-48 Score=358.34 Aligned_cols=217 Identities=18% Similarity=0.186 Sum_probs=197.2
Q ss_pred CCCCcccCCCCCch-hhhhhhcccccchHHHHHHhcc-cccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 8 DNEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~-~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
..-|.|+|+.|+.+ |...+||. ++.+.+++|. .+..++.+++++++.+.+||++++.+.|+|+++.+++|.++|
T Consensus 9 ~~~r~e~d~~g~~~~p~~~~~g~----~t~ra~~~f~~~~~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~al 84 (479)
T PRK14515 9 NGVRIEKDFLGEKEVPNYAYYGV----QTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEAA 84 (479)
T ss_pred CCCccccccCCCCCCcccccchH----HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 34689999999996 56789988 9999999994 556889999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCceecc--cCcc------hhhhHHHHHHHHhCc-cCCc--------cccCCChhhHHHHHHHHHHHHHHH
Q psy17728 86 KDIEYDIEHGKVELKV--ELED------IHMNIESELIRRIGN-VGRK--------LHTGRSRNDQVVLDLRLFTRRNIK 148 (231)
Q Consensus 86 ~~i~~~~~~~~~~~~~--~~ed------v~~~ie~~L~~~~g~-~~~~--------lH~G~SrnD~v~Ta~~L~lr~~~~ 148 (231)
++|..+...+.|++++ ++++ +|+.||+.+.+++|+ .|+| ||+|||||||++|+++|++|+.+.
T Consensus 85 ~ei~~~~~~~~f~~~~~~~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~ 164 (479)
T PRK14515 85 QEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALE 164 (479)
T ss_pred HHHHcCcccCCCCCCcccCCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHH
Confidence 9998876678898877 3355 444488888999984 4774 559999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.+.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||||+ ||++|
T Consensus 165 ~l~~~L~~L~~~L~~~A~~~~~~vm~GrTHlQ~A~PiT~G~~~~~~a~~l~r~~~RL~~~~~~l~~~pLG~gAv-GT~~~ 243 (479)
T PRK14515 165 GLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAV-GTGLN 243 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchhccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc-cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888 88876
Q ss_pred C
Q psy17728 229 K 229 (231)
Q Consensus 229 ~ 229 (231)
-
T Consensus 244 ~ 244 (479)
T PRK14515 244 A 244 (479)
T ss_pred C
Confidence 3
No 11
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=4.7e-48 Score=359.64 Aligned_cols=214 Identities=21% Similarity=0.249 Sum_probs=190.7
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhcccc-cchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNES-ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD 87 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~-~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~ 87 (231)
.|.|+|..|+.+ |..++||++ +.+.+++|+.+ ..+|..++++++.+..||+++|.+.|+||++++++|.++|++
T Consensus 4 ~r~e~d~~g~~~~~~~~l~g~~----~~~~~~~f~~s~~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~ 79 (464)
T PRK00485 4 TRIEKDSMGEVEVPADALWGAQ----TQRSLENFPIGGERMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAAADE 79 (464)
T ss_pred cccccccCCCcCCccccccchh----hHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 589999999996 566799884 67789999777 789999999999999999999999999999999999999998
Q ss_pred HHhhhhcCCceecc----cCcchhhhHHHHHHH----HhC-c--------cCCccccCCChhhHHHHHHHHHHHHHH-HH
Q psy17728 88 IEYDIEHGKVELKV----ELEDIHMNIESELIR----RIG-N--------VGRKLHTGRSRNDQVVLDLRLFTRRNI-KA 149 (231)
Q Consensus 88 i~~~~~~~~~~~~~----~~edv~~~ie~~L~~----~~g-~--------~~~~lH~G~SrnD~v~Ta~~L~lr~~~-~~ 149 (231)
+......+.|+.++ ..+|+|++++.++.. ..| . .++|||+|+|||||++|+++|++|+++ ..
T Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~ 159 (464)
T PRK00485 80 VIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVER 159 (464)
T ss_pred HHhCccccCCCcchhhccccccccccHHHHHHHHHHHhcCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 86543346676666 789999999766553 335 4 456777999999999999999999999 79
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 150 LIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 150 l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
+.+.|..|+++|.++|++|++++||||||+|+|||||||||+++|+++|.||++||.+++++++.|||||+|+ ||++|
T Consensus 160 l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~pLGg~Av-GT~~~ 237 (464)
T PRK00485 160 LLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAV-GTGLN 237 (464)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeeeeecCcCceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-cCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999664 77665
No 12
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=4.2e-48 Score=371.18 Aligned_cols=204 Identities=38% Similarity=0.643 Sum_probs=191.6
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcC-CceecccCc
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVELE 104 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~-~~~~~~~~e 104 (231)
+|++||++++++.+..|+++..+|+++..++|.+++||+++|.+.|+||++++++|.++|..+..+...+ .+......+
T Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~e 82 (614)
T PRK12308 3 LWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDAE 82 (614)
T ss_pred ccccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Confidence 7999999988888889999999999999999999999999999999999999999999998875442222 444566789
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
|+|..+|++|++++|+.++|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||
T Consensus 83 d~h~~ie~~L~~~~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~Q~A~P 162 (614)
T PRK12308 83 DIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQP 162 (614)
T ss_pred cHHHHHHHHHHHHhcccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCcccEE
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+|||||+++|+++|.|+++||.+++++++.+|||||+++||++|.
T Consensus 163 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgga~agt~~~~ 207 (614)
T PRK12308 163 VTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPI 207 (614)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhccccCCCCCC
Confidence 999999999999999999999999999999999999999999773
No 13
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=8e-48 Score=358.43 Aligned_cols=215 Identities=21% Similarity=0.218 Sum_probs=192.2
Q ss_pred CCCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy17728 9 NEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84 (231)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d--~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~a 84 (231)
+.|.|+|.+|+.+ |...+||. ++.+...+|..+. .+- ..++++++++.+||+++|.+.|+||++++++|.++
T Consensus 4 ~~r~~~~~~~~~~~~~~~~~~~----~t~~~~~~f~~~~~~~~~~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~a 79 (472)
T PRK12273 4 NTRIEKDLLGEREVPADAYYGI----HTLRAVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAA 79 (472)
T ss_pred CcccccccCCCcCCcccccchH----HHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4789999999996 56678887 8999999998643 333 56678899999999999999999999999999999
Q ss_pred HHHHHhhhhcCCceeccc----CcchhhhHHHHHH----HHhC-ccCCc--cc------cCCChhhHHHHHHHHHHHHHH
Q psy17728 85 LKDIEYDIEHGKVELKVE----LEDIHMNIESELI----RRIG-NVGRK--LH------TGRSRNDQVVLDLRLFTRRNI 147 (231)
Q Consensus 85 l~~i~~~~~~~~~~~~~~----~edv~~~ie~~L~----~~~g-~~~~~--lH------~G~SrnD~v~Ta~~L~lr~~~ 147 (231)
|.++......+.|+++.. .+|+|+++|.++. +++| +.++| || +|+|||||++|+++|++|+++
T Consensus 80 l~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~~~e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l 159 (472)
T PRK12273 80 CDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSL 159 (472)
T ss_pred HHHHHhccccCCcccchhhccccchhhhHHHHHHHHHHHHHhCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 998865544456766554 8999999998844 5788 56667 99 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCC
Q psy17728 148 KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFL 227 (231)
Q Consensus 148 ~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~ 227 (231)
..+.+.|..++++|.++|++|++|+||||||+|+|||||||||+++|+++|.|+++||.+++++++.|||||||+ ||++
T Consensus 160 ~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~AqP~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~plGg~Av-GT~~ 238 (472)
T PRK12273 160 RKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAI-GTGL 238 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCEEeecccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccce-eCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 8876
Q ss_pred C
Q psy17728 228 I 228 (231)
Q Consensus 228 ~ 228 (231)
|
T Consensus 239 ~ 239 (472)
T PRK12273 239 N 239 (472)
T ss_pred C
Confidence 5
No 14
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=3.9e-47 Score=352.14 Aligned_cols=213 Identities=23% Similarity=0.255 Sum_probs=189.0
Q ss_pred CcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17728 11 EGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDI 88 (231)
Q Consensus 11 ~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i 88 (231)
|.|+|..|+.+ |...+||. ++.+.+.+|.... .+|..++++++.+..||+++|++.|+||++++++|.++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~----~t~~~~~~~~~~~~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i 76 (450)
T cd01357 1 RIEHDLLGEREVPADAYYGI----QTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEI 76 (450)
T ss_pred CCCcccCCCcCCcccccchH----HHHHHHHcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 57999999996 55668887 8999999998644 778889999999999999999999999999999999999988
Q ss_pred HhhhhcCCceecc----cCcchhhhHHHHH----HHHhC-ccCCc--------cccCCChhhHHHHHHHHHHHHHHHHHH
Q psy17728 89 EYDIEHGKVELKV----ELEDIHMNIESEL----IRRIG-NVGRK--------LHTGRSRNDQVVLDLRLFTRRNIKALI 151 (231)
Q Consensus 89 ~~~~~~~~~~~~~----~~edv~~~ie~~L----~~~~g-~~~~~--------lH~G~SrnD~v~Ta~~L~lr~~~~~l~ 151 (231)
......+.|++++ ..+|+|++++.++ ++++| +.|+| ||+|+||||+++|+++|++|+++..+.
T Consensus 77 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~l~ 156 (450)
T cd01357 77 IAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLL 156 (450)
T ss_pred HhccccCCCccchhhccccchhhhhHhHHHHHHHHHHhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHHHH
Confidence 6543335666654 3479888888444 45588 56787 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 152 KLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 152 ~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
+.|..++++|.++|++|++|+||||||+|+|||||||||+++|+++|.|+++||.+++++++.+||||+|+ ||++|
T Consensus 157 ~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~Av-Gt~~~ 232 (450)
T cd01357 157 DALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAI-GTGIN 232 (450)
T ss_pred HHHHHHHHHHHHHHHHccCCEeeccccCcccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCce-eCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999776 77664
No 15
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=7.6e-47 Score=351.98 Aligned_cols=216 Identities=21% Similarity=0.220 Sum_probs=191.3
Q ss_pred CCCCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 8 DNEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
.+-|.|+|+.|+.+ |...+||. +|.+.+.+|..+. .+...++...+.+..||++++.+.|+||++++++|.++|
T Consensus 3 ~~~r~~~d~~g~~~~~~~~~~g~----~t~r~~~~f~~~~~~~~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al 78 (473)
T PRK13353 3 KNMRIEHDLLGEKEVPAEAYYGI----QTLRAVENFPITGYKIHPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQAC 78 (473)
T ss_pred CCcccccccCCCCCCcccccchH----HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 46799999999996 56779988 9999999998754 445566677889999999999999999999999999999
Q ss_pred HHHHhhhhcCCceecc----cCcchhhh----HHHHHHHHhC-ccCCc--------cccCCChhhHHHHHHHHHHHHHHH
Q psy17728 86 KDIEYDIEHGKVELKV----ELEDIHMN----IESELIRRIG-NVGRK--------LHTGRSRNDQVVLDLRLFTRRNIK 148 (231)
Q Consensus 86 ~~i~~~~~~~~~~~~~----~~edv~~~----ie~~L~~~~g-~~~~~--------lH~G~SrnD~v~Ta~~L~lr~~~~ 148 (231)
+++......+.|++++ .++|+||+ |++++.+++| +.|+| ||+|+||||+++|+++|++|+.+.
T Consensus 79 ~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~~~l~e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~ 158 (473)
T PRK13353 79 DEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLE 158 (473)
T ss_pred HHHHhccccCCCCcchhhccccchhcchhhHHHHHHHHHHhCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHH
Confidence 9887543346676665 34698888 4555558898 45775 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.+.+.|..|+++|.++|++|++++||||||+|+|||||||||+++|+++|.|+++||.+++++++.|||||+|+ ||++|
T Consensus 159 ~l~~~L~~l~~~L~~~A~~~~~~im~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~Av-GT~~~ 237 (473)
T PRK13353 159 GLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAV-GTGLN 237 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeccccCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccc-cCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 88765
No 16
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=6.9e-46 Score=343.21 Aligned_cols=183 Identities=55% Similarity=0.836 Sum_probs=173.1
Q ss_pred chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhhHHHHHHHHhCccCCccc
Q psy17728 47 SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLH 126 (231)
Q Consensus 47 ~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ie~~L~~~~g~~~~~lH 126 (231)
.+|..++++.+.+..||++++.+.|+||++++++|.++|.++..++..+.+..++..+|+|+++|++|++++|+.++|||
T Consensus 3 ~~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~iH 82 (435)
T cd01359 3 SFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIGDVGGKLH 82 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccCCCCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 34566678889999999999999999999999999999999876655677877788999999999999999998889999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy17728 127 TGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLL 206 (231)
Q Consensus 127 ~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~ 206 (231)
+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|||||+|||||+++|+++|.|+++||.
T Consensus 83 ~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL~ 162 (435)
T cd01359 83 TGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLA 162 (435)
T ss_pred ccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEecCCCCCccceeccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCCcceecCCCCCC
Q psy17728 207 DCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 207 ~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+++++++.|||||++++||+||.
T Consensus 163 ~~~~~~~~~~lGgaag~gt~~~~ 185 (435)
T cd01359 163 DAYKRVNVSPLGAGALAGTTFPI 185 (435)
T ss_pred HHHHHhCcCCcccccccCCCCCC
Confidence 99999999999999999999973
No 17
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=100.00 E-value=1.8e-46 Score=333.58 Aligned_cols=201 Identities=36% Similarity=0.467 Sum_probs=183.2
Q ss_pred ccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcC-CceecccCcchh
Q psy17728 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVELEDIH 107 (231)
Q Consensus 29 gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~-~~~~~~~~edv~ 107 (231)
|||..+++++...|++++.++.++..+++.+..|+++++++.|+||++++++|.++|+++..++..+ .++++...+++|
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~ 80 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLDDAFELDEIEEDIG 80 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSSSHH
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccccccchhhhhccch
Confidence 5788888899999999999999888788999999999999999999999999999999998754433 566777778888
Q ss_pred hhHHHHHHHHhC-------ccCCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCccccccccC
Q psy17728 108 MNIESELIRRIG-------NVGRKLHTGRSRNDQVVLDLRLFTRRNI-KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHF 179 (231)
Q Consensus 108 ~~ie~~L~~~~g-------~~~~~lH~G~SrnD~v~Ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~ 179 (231)
..++..|.+.+| +.++|||+|+||||+++|+++|++|+++ ..|.+.|..++++|.++|++|++|+||||||+
T Consensus 81 ~~~~~~l~~~~~e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~~grTh~ 160 (312)
T PF00206_consen 81 HAVEANLNEVLGELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAELAEEHKDTPMPGRTHG 160 (312)
T ss_dssp HHHHHHHHHHHHHHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred hHHHHHHHHHhhhhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCceecccccc
Confidence 888876777765 7789999999999999999999999999 56999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 180 QFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 180 Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|+|||||||+|+++|+++|.|+++||.++.++++.+|||||+++||+++.
T Consensus 161 Q~A~P~T~G~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgga~g~gt~~~~ 210 (312)
T PF00206_consen 161 QPAQPTTFGHKLAAWADELARDLERLEEARKRLNVSPLGGAVGAGTSLGI 210 (312)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEETTTTTTTSSHTTS
T ss_pred ccccceeHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhccCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999874
No 18
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.7e-45 Score=341.43 Aligned_cols=213 Identities=21% Similarity=0.259 Sum_probs=185.2
Q ss_pred CcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17728 11 EGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDI 88 (231)
Q Consensus 11 ~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i 88 (231)
|.|+|+.|..+ |..++||. ++.+..++|+.+. .+++.++...+.+..||+++|.+.|+||+++++.|.++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~----~~~~~~~~f~~~~~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al~~i 76 (455)
T cd01362 1 RIEKDSMGEVEVPADALWGA----QTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEV 76 (455)
T ss_pred CCCcccCCCcCCccccchhH----HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 57999999996 56789966 8888999996543 445666677788999999999999999999999999999988
Q ss_pred HhhhhcCCceecc----cCcchhhhHHHHHH----HHhC---------ccCCccccCCChhhHHHHHHHHHHHHHHH-HH
Q psy17728 89 EYDIEHGKVELKV----ELEDIHMNIESELI----RRIG---------NVGRKLHTGRSRNDQVVLDLRLFTRRNIK-AL 150 (231)
Q Consensus 89 ~~~~~~~~~~~~~----~~edv~~~ie~~L~----~~~g---------~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~-~l 150 (231)
......+.|+.+. ..+++|++++.++. ++.| +.++|||+|+||||+++|+++|++|+++. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l 156 (455)
T cd01362 77 IAGKLDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERL 156 (455)
T ss_pred HhcccccCCceehhhccccccccccHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 6542345666665 78899999877776 5657 34667999999999999999999999996 59
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 151 ~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.+.|..++++|.++|++|++++||||||+|+|||+|||||+++|+++|.|+++||.+++++++.|||||+|+ ||+++
T Consensus 157 ~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~-Gt~~~ 233 (455)
T cd01362 157 LPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAV-GTGLN 233 (455)
T ss_pred HHHHHHHHHHHHHHHHHccCCeeeccccCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCeec-cCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999665 77554
No 19
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=1.7e-45 Score=341.62 Aligned_cols=213 Identities=20% Similarity=0.254 Sum_probs=189.3
Q ss_pred CcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17728 11 EGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDI 88 (231)
Q Consensus 11 ~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i 88 (231)
|.|+|..|.-. |..++||- ++.+..++|..+. .+...+++..+.+..||++++.+.|+||++.+++|.++|+++
T Consensus 2 r~e~d~~g~~~~p~~~~~g~----~t~r~~~~f~~~~~~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i 77 (458)
T TIGR00979 2 RIEKDSMGEIQVPADKYWGA----QTQRSLENFKIGTEKMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEI 77 (458)
T ss_pred CCccccCCCCCCcccchhhH----HHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 78999999996 56679976 8889999998764 555677777889999999999999999999999999999998
Q ss_pred HhhhhcCCceec----ccCcchhhhHHH----HHHHHhC-ccC--Cccc------cCCChhhHHHHHHHHHHHHHH-HHH
Q psy17728 89 EYDIEHGKVELK----VELEDIHMNIES----ELIRRIG-NVG--RKLH------TGRSRNDQVVLDLRLFTRRNI-KAL 150 (231)
Q Consensus 89 ~~~~~~~~~~~~----~~~edv~~~ie~----~L~~~~g-~~~--~~lH------~G~SrnD~v~Ta~~L~lr~~~-~~l 150 (231)
..+...+.|+.+ ...+++||+++. .+.+++| +.| +||| +|+||||+++|+++|++|+++ ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~~l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l 157 (458)
T TIGR00979 78 LAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQL 157 (458)
T ss_pred HhccccCCCceecccccccccccccHHHHHHHHHHHHcCcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 654334566655 467888888887 8888997 554 4699 699999999999999999999 599
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 151 ~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.+.|..++++|.++|++|++++||||||+|||||||||||+++|+++|.|+++||.+++++++.+||||+|+ ||++|
T Consensus 158 ~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av-GT~~~ 234 (458)
T TIGR00979 158 IPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAV-GTGLN 234 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCeeecccccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChh-cCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999777 77665
No 20
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=2.3e-45 Score=328.21 Aligned_cols=174 Identities=37% Similarity=0.504 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhhHHHHHHHHhCcc-CCccccCCChh
Q psy17728 54 REDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNV-GRKLHTGRSRN 132 (231)
Q Consensus 54 ~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ie~~L~~~~g~~-~~~lH~G~Srn 132 (231)
++++.+..||+++|.+.|+||+++++.|.++|.++..+.....+......+|+|+++|++|++++|+. ++|+|+|+|||
T Consensus 2 ~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH~G~S~n 81 (325)
T cd01334 2 RADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHTGRSSN 81 (325)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCccCCCCc
Confidence 46788999999999999999999999999999998776544434556788999999999999999965 99999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy17728 133 DQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRV 212 (231)
Q Consensus 133 D~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~ 212 (231)
|+++|+++|++|+++..+.+.|.+++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+++||.++++++
T Consensus 82 Di~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~ 161 (325)
T cd01334 82 DIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRL 161 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceecCCCC
Q psy17728 213 NVNPLGSAALGGEFL 227 (231)
Q Consensus 213 ~~~pLGgaa~~Gt~~ 227 (231)
+.+|||+|+++|+++
T Consensus 162 ~~~~lG~gA~g~~~~ 176 (325)
T cd01334 162 NVLPLGGGAVGTGAN 176 (325)
T ss_pred hhcCCcHhHHhCcCC
Confidence 999999888888877
No 21
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=100.00 E-value=8.4e-45 Score=337.35 Aligned_cols=213 Identities=17% Similarity=0.170 Sum_probs=186.2
Q ss_pred CcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy17728 11 EGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86 (231)
Q Consensus 11 ~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d--~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~ 86 (231)
|.|.|..|+.. |...+||. ++.+.+.+|..+. ++. ...+...+.+..||++++.+.|+||++++++|.++|.
T Consensus 1 r~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al~ 76 (468)
T TIGR00839 1 RIEEDLLGEREVPADAYYGI----HTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAACD 76 (468)
T ss_pred CCCcccCCCCCCcccccchH----HHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57999999997 56678887 8999999998654 444 4455677889999999999999999999999999998
Q ss_pred HHHhh-hhcCCceecc----cCcchhhhH----HHHHHHHhC-ccCCccc--------cCCChhhHHHHHHHHHHHHHHH
Q psy17728 87 DIEYD-IEHGKVELKV----ELEDIHMNI----ESELIRRIG-NVGRKLH--------TGRSRNDQVVLDLRLFTRRNIK 148 (231)
Q Consensus 87 ~i~~~-~~~~~~~~~~----~~edv~~~i----e~~L~~~~g-~~~~~lH--------~G~SrnD~v~Ta~~L~lr~~~~ 148 (231)
++... ...+.+++++ .++|+|+++ +.+|++++| +.|+|+| +|+||||+++|+++|++|+++.
T Consensus 77 ~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~ 156 (468)
T TIGR00839 77 EILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLI 156 (468)
T ss_pred HHHhcccccccccccHHHccCccccccchHHHHHHHHHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHH
Confidence 87431 1112444443 457899987 788888899 6899999 5999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.+.+.|..++++|.++|++|++++||||||+|+|||+|||||+++|+++|.|+++||.+++++++.+||||+|+ ||+++
T Consensus 157 ~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av-GT~~~ 235 (468)
T TIGR00839 157 KLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAI-GTGLN 235 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcce-eCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777 77665
No 22
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.6e-44 Score=334.45 Aligned_cols=213 Identities=21% Similarity=0.219 Sum_probs=187.2
Q ss_pred CcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17728 11 EGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDI 88 (231)
Q Consensus 11 ~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i 88 (231)
|-|+|..|+-+ |..++||+ ++++.+..|..+. .++..++++++.+..||+++|.+.|+||++++++|.++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~i 76 (450)
T cd01596 1 RIEKDSLGEVEVPADAYYGA----QTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEV 76 (450)
T ss_pred CCCcccCCCCCCcccccccH----hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45889999985 66679998 8888899998763 456677788999999999999999999999999999999998
Q ss_pred HhhhhcCCceecc----cCcchhhhHHHHHH----HHhC-ccCCc--------cccCCChhhHHHHHHHHHHHHHHHHHH
Q psy17728 89 EYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVGRK--------LHTGRSRNDQVVLDLRLFTRRNIKALI 151 (231)
Q Consensus 89 ~~~~~~~~~~~~~----~~edv~~~ie~~L~----~~~g-~~~~~--------lH~G~SrnD~v~Ta~~L~lr~~~~~l~ 151 (231)
..+...+.|+.+. ..+|+|++++..+. +++| ..|+| +|+|+|||||++|+++|++|+++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~l~ 156 (450)
T cd01596 77 IAGKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLL 156 (450)
T ss_pred HcCcccCCCcccHHhccCcccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 6543345565554 58899999987443 5667 45777 669999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 152 KLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 152 ~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
+.|..++++|.++|++|++++||||||+|+|||+|||||+++|+++|.|+++||..++++++.|||||||+ ||++|
T Consensus 157 ~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGg~A~-Gt~~~ 232 (450)
T cd01596 157 PALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAV-GTGLN 232 (450)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeeccccccCCeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcce-eCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999776 77655
No 23
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=3.5e-44 Score=332.77 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=179.0
Q ss_pred hhhhhcccccchHHHHHHhccccc---chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCcee
Q psy17728 23 LKQLWTGCFQQSMNEFLQQFNESI---SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL 99 (231)
Q Consensus 23 ~~~l~~gr~~~~~~~~~~~f~~~~---~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~ 99 (231)
...+||. ++.+.+++|..+. .+...+++....+.+||++|+.+.|+||++++++|.++|++|..+...+.|++
T Consensus 8 ~~~~~g~----~t~ra~~nf~~~~~~~~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~~~~f~~ 83 (458)
T PLN00134 8 ADKLWGA----QTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPL 83 (458)
T ss_pred cccchhH----HHHHHHHhcCCCCCccCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCccc
Confidence 3458887 8999999998876 55555666677889999999999999999999999999999988766688888
Q ss_pred cc----c----CcchhhhHHHHHHHHhC-ccCCc--cc------cCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy17728 100 KV----E----LEDIHMNIESELIRRIG-NVGRK--LH------TGRSRNDQVVLDLRLFTRRN-IKALIKLLLDTVKQL 161 (231)
Q Consensus 100 ~~----~----~edv~~~ie~~L~~~~g-~~~~~--lH------~G~SrnD~v~Ta~~L~lr~~-~~~l~~~l~~l~~~L 161 (231)
++ . ++|||+.||+++.+++| +.|+| +| +|+||||+++|+++|++|+. +..+.+.|..|+++|
T Consensus 84 ~~~~~g~g~~~~~~v~evie~~l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L 163 (458)
T PLN00134 84 VVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESL 163 (458)
T ss_pred cccccCCcccccCcHHHHHHHHHHHHhCcccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 4 45555568899999999 47877 88 99999999999999999955 779999999999999
Q ss_pred HHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 162 TRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 162 ~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.++|++|++++||||||+|+|||||||||+++|+++|.|+++||.+++++++.+||||+|+ ||+++
T Consensus 164 ~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av-GT~~~ 229 (458)
T PLN00134 164 RAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAV-GTGLN 229 (458)
T ss_pred HHHHHHhcCCccccccccCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeee-cCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999776 67654
No 24
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=3.7e-45 Score=333.19 Aligned_cols=177 Identities=26% Similarity=0.268 Sum_probs=161.8
Q ss_pred hccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCcee-cccCcchhhhHHHHHHHHhCc-cCCccccC
Q psy17728 51 VLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL-KVELEDIHMNIESELIRRIGN-VGRKLHTG 128 (231)
Q Consensus 51 ~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~-~~~~edv~~~ie~~L~~~~g~-~~~~lH~G 128 (231)
.++++++.+..||+++|.+.|+||++++++|.++++.+..+... -... ...+||+ +++|++|++++|+ .++|+|+|
T Consensus 9 ~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~~-~~~~~~~~~~~v-~~~e~~L~~~~g~~~~~~vH~g 86 (381)
T cd01595 9 NKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAER-IAEIEKETGHDV-IAFVYALAEKCGEDAGEYVHFG 86 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHHH-HHHHHHHhCcCc-HHHHHHHHHHhhhHhhhHeecC
Confidence 35577899999999999999999999999999999876433222 1111 2468999 8999999999996 89999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy17728 129 RSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDC 208 (231)
Q Consensus 129 ~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~ 208 (231)
+||||+++|+++|++|+++..+.+.|..++++|.++|++|+|++||||||+|||||||||||+++|+++|.|+++||.++
T Consensus 87 ~S~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~dt~m~grTH~Q~A~P~T~G~~~~~~~~~L~r~~~rL~~~ 166 (381)
T cd01595 87 ATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEEA 166 (381)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCCcceecCCCCCC
Q psy17728 209 RRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 209 ~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+++++.+||||++++|+++++
T Consensus 167 ~~~~~~~~lGga~G~g~~~~~ 187 (381)
T cd01595 167 RERVLVGGISGAVGTHASLGP 187 (381)
T ss_pred HHhchhhhcccHhhhHhhcCC
Confidence 999999999999999999964
No 25
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.5e-44 Score=329.61 Aligned_cols=186 Identities=23% Similarity=0.257 Sum_probs=166.1
Q ss_pred HHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhhHHHHH
Q psy17728 35 MNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESEL 114 (231)
Q Consensus 35 ~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ie~~L 114 (231)
+.++...|++...+. +.+.+..||+++|.+.|+||++++++|.++++.+..... +. ....+||+ +++|++|
T Consensus 4 ~~~~~~~fs~~~~~~-----~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~--~~-~~~~~~dv-~~~e~~L 74 (387)
T cd01360 4 RPEMKKIWSEENKFR-----KWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVK--EI-EAETKHDV-IAFVTAI 74 (387)
T ss_pred chHHHHHhCHHHHHH-----HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHH--HH-HHHhCCCh-HHHHHHH
Confidence 346888999866553 456777778899999999999999999999865433221 11 12457888 6999999
Q ss_pred HHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHH
Q psy17728 115 IRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAY 194 (231)
Q Consensus 115 ~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~ 194 (231)
++++|+.++|||+|+|||||++|+++|++|+.+..+.+.|..++++|.++|++|++++||||||+|||||||||||+++|
T Consensus 75 ~~~~g~~~~~lH~G~S~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~l~~~ 154 (387)
T cd01360 75 AEYCGEAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALW 154 (387)
T ss_pred HHHHHHhhhheeCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeehhhcCCcceeehHHHHHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 195 ASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 195 ~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+++|.|+++||.+++++++.+|||||+|+|+++|+
T Consensus 155 ~~~L~r~~~rL~~~~~~~~~~~lgga~Gt~~~~~~ 189 (387)
T cd01360 155 YAEFKRHLERLKEARERILVGKISGAVGTYANLGP 189 (387)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccchHhhcCccCCH
Confidence 99999999999999999999999999999999983
No 26
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=2e-44 Score=323.46 Aligned_cols=194 Identities=21% Similarity=0.201 Sum_probs=167.6
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchh
Q psy17728 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH 107 (231)
Q Consensus 28 ~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~ 107 (231)
+++|+.+ ++...|++...+ ...+.+..||++++.+.|+||++++++|.++|+++..+.....-. .....+.+
T Consensus 3 ~~~~~~~--~~~~i~sd~~~i-----~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~~d~~~~~~~-~~~~~~~~ 74 (338)
T TIGR02426 3 DGLFGDP--AALELFSDRAFL-----RAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAAPDLEALAHA-AATAGNPV 74 (338)
T ss_pred ccccCCH--HHHHHcCCHHHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHHHHHhH-HHhcCCcH
Confidence 4567544 588889885544 456778888899999999999999999999998764332111100 11234455
Q ss_pred hhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccccc
Q psy17728 108 MNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPIS 186 (231)
Q Consensus 108 ~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT 186 (231)
.++|+.|++++| +.|+|||+|+||||+++|+++|++|+.+..+.+.|..++++|.++|++|++++||||||+|+|||+|
T Consensus 75 ~~~~~~l~~~~g~~~g~~vH~G~S~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T 154 (338)
T TIGR02426 75 IPLVKALRKAVAGEAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQAVPTT 154 (338)
T ss_pred HHHHHHHHHHhCccccCcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCCCcCeehh
Confidence 699999999998 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 187 LGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 187 ~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||||+++|+++|.|+++||.+++++++.+||||++|+|+++|.
T Consensus 155 ~G~~l~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGtg~~~~~ 197 (338)
T TIGR02426 155 FGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAALGT 197 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCcchhccCCCccc
Confidence 9999999999999999999999999999999999999998763
No 27
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=6.9e-44 Score=354.26 Aligned_cols=193 Identities=25% Similarity=0.310 Sum_probs=172.5
Q ss_pred HHHHHhcccc--cchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhhHHHH
Q psy17728 36 NEFLQQFNES--ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESE 113 (231)
Q Consensus 36 ~~~~~~f~~~--~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ie~~ 113 (231)
.++...|... ..-+...+.+++.++.||++||.+.|+||++++++|.++|.++... ....+...+..+|+|+++|++
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~~ 497 (887)
T PRK02186 419 PEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDA-GFAPLLARPAPRGLYMLYEAY 497 (887)
T ss_pred hhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHh-HHhhCcCCCCCcchHHHHHHH
Confidence 3455555511 1112334578999999999999999999999999999999877543 234666667789999999999
Q ss_pred HHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHH
Q psy17728 114 LIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLL 192 (231)
Q Consensus 114 L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~ 192 (231)
|++++| +.|+|+|+|+|||||++|+++|++|+++..+.+.|..|+++|.++|++|++|+||||||+|+|||||||||++
T Consensus 498 L~~~~g~~~~~~lH~grSrnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~g~TH~Q~A~P~T~G~~~~ 577 (887)
T PRK02186 498 LIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQYQPALPGSLGHYLL 577 (887)
T ss_pred HHHHhChhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCccCCccccccHHHHHH
Confidence 999999 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 193 AYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 193 ~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+|+++|.||++||.+++++++.||||||+++||+||-
T Consensus 578 ~~~~~l~r~~~rl~~~~~r~~~~plG~aag~gt~~~~ 614 (887)
T PRK02186 578 AVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPI 614 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCcccccccCCCCCC
Confidence 9999999999999999999999999999999999984
No 28
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=1.1e-43 Score=328.75 Aligned_cols=194 Identities=24% Similarity=0.242 Sum_probs=168.5
Q ss_pred hcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCce-ecccCcc
Q psy17728 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE-LKVELED 105 (231)
Q Consensus 27 ~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~-~~~~~ed 105 (231)
+++||+. .++...|++.+.++ ..+.+..||+++|.+.|+||+++++.|.+++.++..+. +.+. .....++
T Consensus 2 ~~~~y~~--~~~~~~~s~~~~i~-----~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~~~~~~--~~~~~~~~~~~~ 72 (437)
T cd01597 2 LGDLFGT--PAMREIFSDENRVQ-----AMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLDL--EALAEATARTGH 72 (437)
T ss_pred CccccCC--HHHHHHcCcHHHHH-----HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCH--HHHHHHHHHhCC
Confidence 3467864 46899999877553 46788888999999999999999999999987652221 1121 1122233
Q ss_pred hhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 106 IHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 106 v~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
.+.++|++|++++| +.|+|||+|+||||+++|+++|++|+++..+.+.|..|+++|.++|++|++++||||||+|+|||
T Consensus 73 ~v~a~e~~l~e~~g~~~g~~lH~grSrnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P 152 (437)
T cd01597 73 PAIPLVKQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALP 152 (437)
T ss_pred CcHHHHHHHHHHcCccccCeeecCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeehhhcCcccee
Confidence 34699999999999 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+||||||++|+++|.|+++||.+++++++.|||||++|+||+||.
T Consensus 153 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGga~Gtg~~~~~ 197 (437)
T cd01597 153 ITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLASLGD 197 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCC
Confidence 999999999999999999999999999999999999999999985
No 29
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=3.1e-43 Score=316.94 Aligned_cols=198 Identities=20% Similarity=0.215 Sum_probs=167.4
Q ss_pred hhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccC
Q psy17728 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (231)
Q Consensus 24 ~~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 103 (231)
+.+++.+|+.+ ++...|++.+.+..+ .+|+.++ ++++.+.|+||++.++.|.++|+++..+...........+
T Consensus 8 ~~~~~~~~~~~--~~~~~~s~~~~i~a~---l~vE~A~--a~a~~~~G~Ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~g 80 (351)
T PRK05975 8 HPFLSGLFGDD--EIAALFSAEADIAAM---LAFEAAL--AEAEAEHGIIPAEAAERIAAACETFEPDLAALRHATARDG 80 (351)
T ss_pred cchhhccCCCH--HHHHHcCcHHHHHHH---HHHHHHH--HHHHHHcCCCCHHHHHHHHHHhccCCCCHHHHhhHHHhcC
Confidence 34677788654 588899998876553 3555555 5779999999999999999999775433221111111223
Q ss_pred cchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17728 104 EDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (231)
Q Consensus 104 edv~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A 182 (231)
+++ .++++.|++++| +.++|||+|+||||+++|+++|++|+++..|.+.|..++++|.++|++|++|+||||||+|||
T Consensus 81 ~~v-~~~v~~l~~~~g~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~Q~A 159 (351)
T PRK05975 81 VVV-PALVRQLRAAVGEEAAAHVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTRMQAA 159 (351)
T ss_pred CcH-HHHHHHHHHHhCchhhCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcC
Confidence 444 588899999997 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||||||||+++|+++|.|+++||.+++++++.+||||++|+++++|.
T Consensus 160 ~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~ 206 (351)
T PRK05975 160 IPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGTLEKLGG 206 (351)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccHhccCccCCC
Confidence 99999999999999999999999999999999999999999887764
No 30
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=3.3e-43 Score=325.40 Aligned_cols=189 Identities=19% Similarity=0.252 Sum_probs=166.0
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhh
Q psy17728 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMN 109 (231)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ 109 (231)
||+. .++...|++.+.+.. .+.+..||++++++.|+||+++++.|.+++. +..+ ...+. ....+||+ .+
T Consensus 4 ~y~~--~~~~~i~s~~~~~~~-----~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~-~d~~-~~~~~-~~~~~~dv-~~ 72 (442)
T PRK08470 4 RYAR--EEMKKKWTMQAKYDA-----WLEVEKAAVKAWNKLGLIPDSDCEKICKNAK-FDIA-RIDEI-EKTTKHDL-IA 72 (442)
T ss_pred ccCc--HHHHHHcCHHHHHHH-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhcc-cchH-HHHHH-HHccCCCh-HH
Confidence 7763 468889999776644 4666777789999999999999999999873 2111 00111 13568999 58
Q ss_pred HHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHH
Q psy17728 110 IESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGH 189 (231)
Q Consensus 110 ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~ 189 (231)
+++.|.+++|+.++|||+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+||||||||||
T Consensus 73 ~v~~L~e~~g~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~ 152 (442)
T PRK08470 73 FLTSVSESLGEESRFVHYGMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFGL 152 (442)
T ss_pred HHHHHHHHccccccceecCCChhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcCeehhHHH
Confidence 88999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 190 YLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 190 ~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|+++|+++|.|+++||.+++++++.+||||++|+++++|+
T Consensus 153 ~~a~~~~~l~r~~~RL~~~~~~~~~~~lgGAvGt~a~~~~ 192 (442)
T PRK08470 153 VLAIWYDEIKRHLKALEHTMEVISVGKISGAMGNFAHAPL 192 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhcccccCCh
Confidence 9999999999999999999999999999999999998874
No 31
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=5.8e-43 Score=324.74 Aligned_cols=196 Identities=18% Similarity=0.129 Sum_probs=168.2
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcc
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ed 105 (231)
++++||+.. ++...|++.+.+ .+++.+..||+++|.+.|+||+++++.|.++|.....+...-.......+||
T Consensus 5 ~~~~~y~~~--~~~~i~s~~~~~-----~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~~~~~~~~~~~d 77 (451)
T PRK06390 5 PIEYRYGRD--QVKYIFDDENRL-----RYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVREIESEIKHD 77 (451)
T ss_pred CcCcccCCH--HHHHHcCHHHHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHHHHHhCCC
Confidence 345678644 688899987754 4578888889999999999999999999999865433322100011234899
Q ss_pred hhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccc
Q psy17728 106 IHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPI 185 (231)
Q Consensus 106 v~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~Pi 185 (231)
+ +++|++|++++|+.++|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+||||||
T Consensus 78 v-~~~~~~L~~~~g~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~ 156 (451)
T PRK06390 78 V-MALVEALSEQCSAGKNYVHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPI 156 (451)
T ss_pred c-HHHHHHHHHHhhhhhhheecCccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhCCCcCeeh
Confidence 9 899999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 186 SLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 186 T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|||||+++|+++|.|+++||.+++++++.+++||++|+|.+++.
T Consensus 157 T~G~~~~~~~~~l~r~~~RL~~~~~r~~~~~~~gavGt~a~~g~ 200 (451)
T PRK06390 157 TFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALGK 200 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhcChhhCCC
Confidence 99999999999999999999999999997777777666666553
No 32
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=1.1e-42 Score=322.81 Aligned_cols=194 Identities=22% Similarity=0.219 Sum_probs=167.9
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--HHhhhhcCCceecccC
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IEYDIEHGKVELKVEL 103 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~--i~~~~~~~~~~~~~~~ 103 (231)
++++||+. .++...|++.+.++. .+.+..||+++|.+.|+||+++++.|.++|.+ +..+.. .... ...+
T Consensus 5 ~~~~~~~~--~~~~~~~s~~~~~~~-----~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~-~~~~-~~~~ 75 (449)
T PRK08540 5 PIDYRYGT--PEMKRVWSEENKLQK-----MLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERV-KEIE-AEIH 75 (449)
T ss_pred CcCcccCC--HHHHHHcChHHHHHH-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHH-HHHH-HHhC
Confidence 45568864 468889999776654 45666677799999999999999999999976 532210 1111 2345
Q ss_pred cchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17728 104 EDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (231)
Q Consensus 104 edv~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A 182 (231)
+|+ +++|++|++++| +.++|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|+|
T Consensus 76 ~~v-~~~e~~L~~~~~~~~~~~vH~g~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A 154 (449)
T PRK08540 76 HDI-MAVVKALSEVCEGDAGEYVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTHGQHA 154 (449)
T ss_pred CCc-HHHHHHHHHHhhhhhhcceecCccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhcCCCcC
Confidence 677 899999999995 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||+|||||+++|+++|.|+++||.+++++++.+||||++|+|.+++.
T Consensus 155 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGt~~a~~~ 201 (449)
T PRK08540 155 VPTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQMTGAVGTQAAFGE 201 (449)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHhhheccccccccchhhCCC
Confidence 99999999999999999999999999999999999998888877664
No 33
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=3.3e-42 Score=317.93 Aligned_cols=191 Identities=20% Similarity=0.212 Sum_probs=162.0
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhh
Q psy17728 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMN 109 (231)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ 109 (231)
||+ +.++...|++.+.++.+ .+||.++| +++.+.|+||+++++.|.+.+.....+...-.-.....+||+ .+
T Consensus 4 ~y~--~~~~~~i~s~~~~~~~~---l~vE~ala--~a~~~~g~ip~~aa~~i~~~~~~~~~d~~~~~~~~~~~~h~v-~a 75 (435)
T PRK07492 4 RYS--RPEMVAIWEPETKFRIW---FEIEAHAC--EAQAELGVIPKEAAETIWEKGKDAEFDVARIDEIEAVTKHDV-IA 75 (435)
T ss_pred ccC--cHHHHHHcCHHHHHHHH---HHHHHHHH--HHHHHcCCCCHHHHHHHHHhCcccCCCHHHHHHHHHHhCCCh-HH
Confidence 565 34688999999888764 47888876 568999999999999998876321111111001112467888 79
Q ss_pred HHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHH
Q psy17728 110 IESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGH 189 (231)
Q Consensus 110 ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~ 189 (231)
++++|++++|+.++|||+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||+||||||
T Consensus 76 ~~~~L~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~ 155 (435)
T PRK07492 76 FLTHLAEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGL 155 (435)
T ss_pred HHHHHHHHhhHhhhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeccCCccceehhHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 190 YLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 190 ~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
|+++|+++|.|+++||.+++++++.+||||++|++.+++
T Consensus 156 ~~a~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~~~ 194 (435)
T PRK07492 156 KLARFYAEFARNRERLVAAREEIATCAISGAVGTFANID 194 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccCC
Confidence 999999999999999999999999999998764444444
No 34
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=2.6e-41 Score=312.69 Aligned_cols=191 Identities=23% Similarity=0.313 Sum_probs=162.4
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-hhhhcCCc--eecccCc
Q psy17728 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIE-YDIEHGKV--ELKVELE 104 (231)
Q Consensus 28 ~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~-~~~~~~~~--~~~~~~e 104 (231)
.+||+ +.++...|++...+ .+.+.+..||+++|.+.|+||+++++.|.+++ .+. .+. ..+ .....+|
T Consensus 2 ~~~y~--~~~~~~ifs~~~~~-----~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~-~~~~~d~--~~l~~~~~~~~~ 71 (435)
T TIGR00928 2 DERYG--TPEMRAIWSEENKF-----KTWLDVEVALLRALAELGVIPAEAVKEIRAKA-NFTDVDL--ARIKEIEAVTRH 71 (435)
T ss_pred CcccC--cHHHHHHhCHHHHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhC-CCCccCH--HHHHHHHHHHCc
Confidence 45776 34688899986655 44567777888999999999999999998872 221 011 011 0112468
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
|+ +++|++|++++|+.++|||+|+||||+++|+++|++|+.+..+.+.|..++++|.++|++|++++||||||+|||||
T Consensus 72 ~v-~~~e~~l~~~~g~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P 150 (435)
T TIGR00928 72 DV-KAVVYALKEKCGAEGEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEP 150 (435)
T ss_pred Ch-HHHHHHHHHHhhhhhhheeecccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHhHHhcCCCCcc
Confidence 88 89999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||||||+++|+++|.|+++||.+++++++.+||||++|+|.+.++
T Consensus 151 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGa~Gt~~~~~~ 195 (435)
T TIGR00928 151 TTLGKKFALWADEMKRQLERLLQAKERIKVGGISGAVGTHAAAYP 195 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhHhhccc
Confidence 999999999999999999999999999999999997555555553
No 35
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.4e-41 Score=313.35 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=160.5
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhh
Q psy17728 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMN 109 (231)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ 109 (231)
||+ +.++...|++.+.+..+ .+||+++| +++++.|+||+++++.|.+.+ ++..+ .-.-.....+||| ++
T Consensus 4 ~y~--~~~~~~~fs~~~~~~~~---l~vE~ala--~a~~~~g~ip~~aa~~i~~~~-~~d~~--~i~~~~~~~~h~v-~a 72 (431)
T PRK07380 4 RYT--LPEMGNIWTDTAKFQTW---LDVEIAVC--EAQAELGKIPQEAVEEIKAKA-NFDPQ--RILEIEAEVRHDV-IA 72 (431)
T ss_pred ccC--cHHHHHHcCHHHHHHHH---HHHHHHHH--HHHHHcCCCCHHHHHHHHhcc-CCCHH--HHHHHHHHhCCCh-HH
Confidence 776 34688999998888764 37777766 668999999999999998764 22111 0001113478999 78
Q ss_pred HHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHH
Q psy17728 110 IESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGH 189 (231)
Q Consensus 110 ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~ 189 (231)
+++.|++++|+.++|||+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+||||||||||
T Consensus 73 ~v~~l~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~ 152 (431)
T PRK07380 73 FLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGF 152 (431)
T ss_pred HHHHHHHHHHHhhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeechhcCccceechHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 190 YLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 190 ~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
|+++|+++|.|+++||.+++++++.+||||++|++.+++
T Consensus 153 ~~a~~~~~l~r~~~RL~~~~~~~~~~~l~GAvGt~~~~~ 191 (431)
T PRK07380 153 KLAGWLAETLRNRERLVRLREDIAVGQISGAVGTYANTD 191 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcCcccCC
Confidence 999999999999999999999999999977664443443
No 36
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=2.4e-40 Score=307.34 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=164.7
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e 104 (231)
.+++++|+.. ++...|++.+.+..+ .+|+.++| +++.+.|+||++.++.|.++|++-..+...-.-.....++
T Consensus 6 ~~~~~~~~~~--~~~~i~s~~~~i~a~---l~ve~A~A--~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~ 78 (452)
T PRK09053 6 RLTDLYFGSP--AMRAIFSDRATVQRM---LDFEAALA--RAEAACGVIPAAAVAPIEAACDAERLDLDALAQAAALAGN 78 (452)
T ss_pred hhhhhhcCCH--HHHHHcCcHHHHHHH---HHHHHHHH--HHHHHcCCCCHHHHHHHHHhccccCCCHHHHHHHHhhcCC
Confidence 4667778544 588899998877663 36777766 6689999999999999999985410110000000112445
Q ss_pred chhhhHHHHHHHHhC----ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCC
Q psy17728 105 DIHMNIESELIRRIG----NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQ 180 (231)
Q Consensus 105 dv~~~ie~~L~~~~g----~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q 180 (231)
++ .++++.|.+.+| +.++|||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|
T Consensus 79 ~~-~~lv~~l~~~~~~~~~~~~~~vH~G~SsnDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~Q 157 (452)
T PRK09053 79 LA-IPLVKQLTAQVAARDAEAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWLQ 157 (452)
T ss_pred ch-HHHHHHHHHHhcccCcchhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeehhccCC
Confidence 55 578889999996 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 181 FAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 181 ~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+|||||||||+++|+++|.|+++||.+++++++.+||||++|++++++.
T Consensus 158 ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgavGt~~~~~~ 206 (452)
T PRK09053 158 QALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGGAAGTLASLGE 206 (452)
T ss_pred cceechHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhccccccc
Confidence 9999999999999999999999999999999999999999999887763
No 37
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=301.78 Aligned_cols=195 Identities=23% Similarity=0.276 Sum_probs=169.3
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchh
Q psy17728 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH 107 (231)
Q Consensus 28 ~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~ 107 (231)
.+||++ .++...||+.+.+..++ +++++++ +++++.|+||+++++.|.+.+..-..+...-.-.....+|||
T Consensus 2 ~~RY~~--~em~~ifS~~~~~~~~l---~vE~ala--~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~eie~~t~HdV- 73 (438)
T COG0015 2 DGRYSS--PEMRAIFSEEAKLRAWL---KVEAALA--RAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEIEAETGHDV- 73 (438)
T ss_pred CcccCc--HHHHHHcCHHHHHHHHH---HHHHHHH--HHHHHhCCCCHHHHHHHHHHhcccccCHHHHHHHHHHhCCCc-
Confidence 468876 56999999999886643 6666665 779999999999999998885311111000000113478999
Q ss_pred hhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccccc
Q psy17728 108 MNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPIS 186 (231)
Q Consensus 108 ~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT 186 (231)
+++++.|.+.|| +.++|||+|+|||||+||++.|++|+++..|.+.|..++++|.++|.+|++++|+||||+|||+|||
T Consensus 74 ~a~v~~l~e~~~~~~~~~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m~GRTHgq~A~PtT 153 (438)
T COG0015 74 KALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTT 153 (438)
T ss_pred HHHHHHHHHhcCcccccceecccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecccccCCCCccch
Confidence 899999999999 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCCC
Q psy17728 187 LGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIKK 230 (231)
Q Consensus 187 ~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~~ 230 (231)
||+++++|+++|.|+++||.++.+++..+++||++|+.++||++
T Consensus 154 ~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~~~ 197 (438)
T COG0015 154 FGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALGDL 197 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhHhhcCch
Confidence 99999999999999999999999999999999999999999985
No 38
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=1.1e-39 Score=301.66 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=161.3
Q ss_pred cccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHhhhhcCCceecccCcch
Q psy17728 28 TGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTLKDIEYDIEHGKVELKVELEDI 106 (231)
Q Consensus 28 ~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~Gi-I~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv 106 (231)
.|||+.+ ++...|++.+.+..+ .+++.++| +++.+.|+ ||+++++.|.+.+..+ +...-.......+|||
T Consensus 2 ~~ry~~~--~~~~~fs~~~~~~~~---l~~e~ala--~a~~~~g~~ip~~~a~~i~~~~~~~--d~~~i~~~e~~~~hdv 72 (436)
T cd03302 2 ASRYASK--EMVYIFSPRKKFSTW---RKLWLWLA--EAEKELGLDISDEQIEEMKANVENI--DFEIAAAEEKKLRHDV 72 (436)
T ss_pred CCCcCCH--HHHHHcChHHHHHHH---HHHHHHHH--HhhHHhCCCCCHHHHHHHHHhhhcC--CHHHHHHHHHHhCcCc
Confidence 5788754 688999998877663 36777776 56799999 9999999998876222 2111111123478999
Q ss_pred hhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccccc
Q psy17728 107 HMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPIS 186 (231)
Q Consensus 107 ~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT 186 (231)
. +++++|++++|+.++|||+|+||||+++|++.|++|+++..+.+.|..++++|.++|++|++++||||||+|||||||
T Consensus 73 ~-a~~~~l~~~~~~~~~~vH~G~TS~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~T 151 (436)
T cd03302 73 M-AHVHAFGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTT 151 (436)
T ss_pred h-HHHHHHHHHhHhccCeeeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCccccch
Confidence 4 888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCC
Q psy17728 187 LGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGE 225 (231)
Q Consensus 187 ~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt 225 (231)
||||+++|+++|.|+++||.+++++++.+++||++|+|+
T Consensus 152 fG~~~a~~~~~L~r~~~RL~~~~~~~~~~~~~GavGt~a 190 (436)
T cd03302 152 VGKRACLWIQDLLMDLRNLERLRDDLRFRGVKGTTGTQA 190 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcChhhhhH
Confidence 999999999999999999999999999988888777753
No 39
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2.7e-38 Score=293.14 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=153.0
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCC---CCHHHHHH---HHHHHHHHHh-hhhcCCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI---IDEQDKEL---IVKTLKDIEY-DIEHGKV 97 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~Gi---I~~~~a~~---I~~al~~i~~-~~~~~~~ 97 (231)
.+|++||+..+.++...|++...+ .+.+.+..|+++++++.|+ ||+..++. |.+.+.++.. ++..-..
T Consensus 10 ~p~~~ry~~~~~e~~~~~s~~~~~-----~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~~d~~~i~~ 84 (456)
T PRK09285 10 SPLDGRYASKTAALRPIFSEFGLI-----RYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDAARIKE 84 (456)
T ss_pred CCCccccCCCCHHHHHHhCHHHHH-----HHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 368889988556788999885543 5577778888899999998 77766666 7666532210 1111001
Q ss_pred eecccCcchhhhHHHHHHHHhC------ccCCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Q psy17728 98 ELKVELEDIHMNIESELIRRIG------NVGRKLHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLAQLHKH 170 (231)
Q Consensus 98 ~~~~~~edv~~~ie~~L~~~~g------~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~ 170 (231)
..+..+||+ ++++++|++++| +.++|||+|+|||||++|+++|++|+++.. |.+.|..++++|.++|++|++
T Consensus 85 ~e~~~~hdv-~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~~ 163 (456)
T PRK09285 85 IERTTNHDV-KAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHEYAD 163 (456)
T ss_pred HHHHhCCCh-HHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 112356888 799999999997 468999999999999999999999999998 999999999999999999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccee
Q psy17728 171 HIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAAL 222 (231)
Q Consensus 171 t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~ 222 (231)
++||||||+|||||||||+|+++|+++|.|+++||.++ ....++||+++
T Consensus 164 t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~---~~~g~~~GAvG 212 (456)
T PRK09285 164 VPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEAV---EILGKINGAVG 212 (456)
T ss_pred CeeeceecCCCCeeehHHHHHHHHHHHHHHHHHHHHHH---HHhhhcccccc
Confidence 99999999999999999999999999999999999998 24455555544
No 40
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=2.2e-37 Score=284.49 Aligned_cols=177 Identities=18% Similarity=0.169 Sum_probs=146.3
Q ss_pred HhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHH-hhhhcCCceecccCcchhhhHHH
Q psy17728 40 QQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDE------QDKELIVKTLKDIE-YDIEHGKVELKVELEDIHMNIES 112 (231)
Q Consensus 40 ~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~------~~a~~I~~al~~i~-~~~~~~~~~~~~~~edv~~~ie~ 112 (231)
..|++.+.+..+ .+||+++| +++++.|+||+ ++++.|.+.+.... .++..-.-.....+||+ .++|+
T Consensus 3 ~~~s~~~~~~~~---l~vE~ala--~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~~~~~~hdv-~al~~ 76 (425)
T cd01598 3 PYFSEYALIKYR---VQVEVEWL--IALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNHDV-KAVEY 76 (425)
T ss_pred HHhCHHHHHHHH---HHHHHHHH--HHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHHHHHHCCCc-HHHHH
Confidence 467777766664 47777776 66899999999 99999988875422 12111111123468999 79999
Q ss_pred HHHHHhC------ccCCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccc
Q psy17728 113 ELIRRIG------NVGRKLHTGRSRNDQVVLDLRLFTRRNIK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPI 185 (231)
Q Consensus 113 ~L~~~~g------~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~Pi 185 (231)
+|++++| +.++|||+|+||||++||+++|++|+++. .+.+.|..++++|.++|++|++|+||||||+|+||||
T Consensus 77 ~l~~~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~Q~A~P~ 156 (425)
T cd01598 77 FLKEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPT 156 (425)
T ss_pred HHHHHhcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccCeeh
Confidence 9999997 35789999999999999999999999995 6789999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCC
Q psy17728 186 SLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGE 225 (231)
Q Consensus 186 T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt 225 (231)
|||+|+++|+++|.|+++||.++. ..++|||++++-.
T Consensus 157 TfG~~~a~w~~~L~r~~~RL~~~~---~~g~~gGavGt~~ 193 (425)
T cd01598 157 TLGKELAVFVYRLERQYKQLKQIE---ILGKFNGAVGNFN 193 (425)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhheeeCchhhhh
Confidence 999999999999999999999994 4555888776543
No 41
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=8.6e-37 Score=282.97 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=157.5
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCC---CH---HHHHHHHHHHHHHHh-hhhcCCce
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNII---DE---QDKELIVKTLKDIEY-DIEHGKVE 98 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI---~~---~~a~~I~~al~~i~~-~~~~~~~~ 98 (231)
++++||+..+.++...|++.+.+.++ .++|++++ +++++.|+| |+ ++++.|.+.+..+.. +...-...
T Consensus 14 pl~~ry~~~~~e~~~ifSd~a~~~~~---l~vE~ala--~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~~~~ 88 (458)
T PLN02848 14 PLDGRYWSKVKDLRPIFSEFGLIRYR---VLVEVKWL--LKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEVKKI 88 (458)
T ss_pred CchhhhcCCcHHHHHHcCHHHHHHHH---HHHHHHHH--HHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHhhHHHHHHH
Confidence 66789987666799999998877663 36666655 778999997 66 999999887743310 11110011
Q ss_pred ecccCcchhhhHHHHHHHHhC---c---cCCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCc
Q psy17728 99 LKVELEDIHMNIESELIRRIG---N---VGRKLHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLAQLHKHH 171 (231)
Q Consensus 99 ~~~~~edv~~~ie~~L~~~~g---~---~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~t 171 (231)
....+||+ ++++.++++++| + .++|||+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|+++
T Consensus 89 e~~t~hdv-~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~dt 167 (458)
T PLN02848 89 ERVTNHDV-KAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYV 167 (458)
T ss_pred HHHhCCCc-HHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 13478998 799999999996 2 45899999999999999999999999998 9999999999999999999999
Q ss_pred cccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCC
Q psy17728 172 IMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEF 226 (231)
Q Consensus 172 ~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~ 226 (231)
+|+||||+|+|+|||||+|+++|+++|.|+++||.++. ..+++||++|+.++
T Consensus 168 ~m~GRTH~Q~A~PiTfG~~~a~w~~~L~r~~~rL~~~~---l~g~~~GAvGt~aa 219 (458)
T PLN02848 168 PMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQLSEVK---IKGKFAGAVGNYNA 219 (458)
T ss_pred eeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHH---hccEeecccchhhh
Confidence 99999999999999999999999999999999999883 35777888765544
No 42
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=3.1e-35 Score=261.00 Aligned_cols=210 Identities=20% Similarity=0.292 Sum_probs=184.3
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAH-----VTMLGERNIIDEQDKELIVK 83 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~-----~~~l~~~GiI~~~~a~~I~~ 83 (231)
.|.|+|++|+.. +..++||. ++++..++|..+... ++..+..+++. ++...+.|.++++.+++|.+
T Consensus 3 ~R~E~Dt~G~i~Vpad~~wgA----QTqRs~~nF~ig~~~----mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~ 74 (462)
T COG0114 3 YRIEHDTMGEVEVPADALWGA----QTQRSLENFPIGGEK----MPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIA 74 (462)
T ss_pred cccccccCccccccHHHHHHH----HHHHHHhcCCccccc----CcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 489999999998 56789998 999999999987631 13445444444 34457899999999999999
Q ss_pred HHHHHHhhhhcCCceecc----cCcchhhhHHHHHHHHh----C-ccC--Ccc------ccCCChhhHHHHHHHHHHHHH
Q psy17728 84 TLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NVG--RKL------HTGRSRNDQVVLDLRLFTRRN 146 (231)
Q Consensus 84 al~~i~~~~~~~~~~~~~----~~edv~~~ie~~L~~~~----g-~~~--~~l------H~G~SrnD~v~Ta~~L~lr~~ 146 (231)
++++|..+...+.||++. ++...+|+.+++|.+++ | +.| ..| ++|+||||+++||+++....+
T Consensus 75 Aadev~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~ 154 (462)
T COG0114 75 AADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLA 154 (462)
T ss_pred HHHHHHcCcccCCCCeEEEecCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHH
Confidence 999999988889999875 78899999999999886 3 222 234 499999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCC
Q psy17728 147 IK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGE 225 (231)
Q Consensus 147 ~~-~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt 225 (231)
+. +|++.|..|+++|.++|++|.+++++||||+|+|.|+|||++|++|+.+|.+.++|+.+..+.+...++||+|+ ||
T Consensus 155 v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAV-GT 233 (462)
T COG0114 155 VVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAV-GT 233 (462)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCccc-cc
Confidence 87 79999999999999999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred CCC
Q psy17728 226 FLI 228 (231)
Q Consensus 226 ~~~ 228 (231)
++-
T Consensus 234 GlN 236 (462)
T COG0114 234 GLN 236 (462)
T ss_pred CcC
Confidence 653
No 43
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-33 Score=246.81 Aligned_cols=215 Identities=20% Similarity=0.224 Sum_probs=189.8
Q ss_pred CCCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy17728 9 NEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84 (231)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d--~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~a 84 (231)
+-|.|+|..|..+ +...+||- ++-+.+++|..+. .++ ..+++..+.+-.|.+.+..+.|.||++.+++|.+|
T Consensus 3 ~~R~E~D~lGe~~ip~evYyGI----~TlRA~eNF~Is~~~~~~~p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~A 78 (471)
T COG1027 3 DMRIERDLLGEREIPAEVYYGI----HTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKA 78 (471)
T ss_pred cchhhhhhcccccCcchhhhhh----HHHHHHhcCCCcCCcccccHHHHHHHHHHHHHHHHhhhhhCCCCHHHHHHHHHH
Confidence 4588999999997 57789987 8999999998875 333 33334445555555556679999999999999999
Q ss_pred HHHHHhhhhcCCceecc----cCcchhhhHHHHHHHHh----C-ccCCc--------cccCCChhhHHHHHHHHHHHHHH
Q psy17728 85 LKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NVGRK--------LHTGRSRNDQVVLDLRLFTRRNI 147 (231)
Q Consensus 85 l~~i~~~~~~~~~~~~~----~~edv~~~ie~~L~~~~----g-~~~~~--------lH~G~SrnD~v~Ta~~L~lr~~~ 147 (231)
|++|..+...++|++++ .+.++||+.++++.++. | +.|.| |++++|+||+.+|++++.+...+
T Consensus 79 CDeil~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE~lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l 158 (471)
T COG1027 79 CDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSL 158 (471)
T ss_pred HHHHHcCccccccceeccccCCCccccccHHHHHHHHHHHHhcCCCCceeeeCCccccchhhcccccchhHHHHHHHHHH
Confidence 99999887788999886 78999999999999885 5 45654 45999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCC
Q psy17728 148 KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFL 227 (231)
Q Consensus 148 ~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~ 227 (231)
.++...+..|++++..++++|.+++++||||+|+|.|+|+|+.|.+|+..|.||++||.++.+++..+.|||+|+ ||++
T Consensus 159 ~~L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAi-GTGi 237 (471)
T COG1027 159 RKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAI-GTGI 237 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcChhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceee-ccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8876
Q ss_pred C
Q psy17728 228 I 228 (231)
Q Consensus 228 ~ 228 (231)
.
T Consensus 238 N 238 (471)
T COG1027 238 N 238 (471)
T ss_pred C
Confidence 4
No 44
>KOG1317|consensus
Probab=99.95 E-value=3.7e-27 Score=204.90 Aligned_cols=213 Identities=21% Similarity=0.253 Sum_probs=177.7
Q ss_pred CCCcccCCCCCch-hhhhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHH-----HHHHHhCCCCCHHHHHHHH
Q psy17728 9 NEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAH-----VTMLGERNIIDEQDKELIV 82 (231)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~-----~~~l~~~GiI~~~~a~~I~ 82 (231)
.-|+|.|+||+.+ |+.++||. ++.+...+|.....-.++ +..+..+... +....+.| +++..+++|.
T Consensus 27 ~fR~E~DtfGe~~VP~DkyyGA----QT~Rs~~NF~IGg~~ERM--P~pii~AfGiLKkaaA~vN~~~G-LDpkis~Ai~ 99 (487)
T KOG1317|consen 27 SFRTERDTFGEIEVPADKYYGA----QTQRSLQNFKIGGERERM--PEPIIQAFGILKKAAAEVNQEYG-LDPKISKAIS 99 (487)
T ss_pred chhhhccccCcccccchhhhhH----HHHHHhhccccCCccccC--chHHHHHHHHHHHHHHHHhHhhC-CChHHHHHHH
Confidence 3478999999998 68899998 899999999775533332 3344433332 23345677 7888999999
Q ss_pred HHHHHHHhhhhcCCceecc----cCcchhhhHHHHHHHHh----C-ccC-Cccc------cCCChhhHHHHHHHHHHHHH
Q psy17728 83 KTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-NVG-RKLH------TGRSRNDQVVLDLRLFTRRN 146 (231)
Q Consensus 83 ~al~~i~~~~~~~~~~~~~----~~edv~~~ie~~L~~~~----g-~~~-~~lH------~G~SrnD~v~Ta~~L~lr~~ 146 (231)
.+++++......+.||+.. ++...+|+.++++.+++ | +.| +.+| ..+||||...|++++..-..
T Consensus 100 ~AadeV~~GKL~dhFPLvvwQTGSGTQsNMN~NEVIsNrAieilGg~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~e 179 (487)
T KOG1317|consen 100 QAADEVASGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEILGGKLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATE 179 (487)
T ss_pred HHHHHHhcCcccccCceeEEecCCCccccCcHHHHHHHHHHHHhcccccCcccCCccccccccccCCccchHHHHHHHHH
Confidence 9999998876677788643 67788899998888775 4 443 2344 89999999999999998888
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCC
Q psy17728 147 IK-ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGE 225 (231)
Q Consensus 147 ~~-~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt 225 (231)
+. .+++.|..|.++|..++.+|+|++.+||||.|+|.|.|+|++|++|++++...++|+...++|+....+||.|+ ||
T Consensus 180 i~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ngl~Rv~~~lpr~y~LA~GGTAV-GT 258 (487)
T KOG1317|consen 180 INSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAV-GT 258 (487)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhHHHHHhcCCccc-cc
Confidence 76 79999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred CCCC
Q psy17728 226 FLIK 229 (231)
Q Consensus 226 ~~~~ 229 (231)
++.-
T Consensus 259 GLNT 262 (487)
T KOG1317|consen 259 GLNT 262 (487)
T ss_pred cccc
Confidence 7653
No 45
>KOG2700|consensus
Probab=99.88 E-value=5.5e-23 Score=184.97 Aligned_cols=198 Identities=17% Similarity=0.095 Sum_probs=160.7
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcc
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ed 105 (231)
..++||.... ++...|+..+++.. +..++.++|.+..-...+.||++.++++...++--..++..-.-.-..-.+|
T Consensus 9 pls~ry~~~~-~l~~~~s~~~~~~t---wr~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d~~~l~~ee~r~~hd 84 (481)
T KOG2700|consen 9 PLSGRYASIS-ELNPIFSDRNKFST---WRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTALSPEEGRYRHD 84 (481)
T ss_pred cccceecccc-ccchhhhhhhhhhh---hhHHHHhhhhhhhcCCcccchHHHHHHHHhhccccccchhhcChhhhhhccc
Confidence 3446776532 45666766555533 3467777776664455566999999999886643222322211111235689
Q ss_pred hhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccc
Q psy17728 106 IHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPI 185 (231)
Q Consensus 106 v~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~Pi 185 (231)
| |+.++.+.+.|..+.+++|.|+|++++.|.+..+.+|++.+.+.+.|...++.+...+.+|++++|.||||+|+|+|+
T Consensus 85 V-mahvh~~~~~cp~aagiihlgatsc~vtdnadli~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~q~A~l~ 163 (481)
T KOG2700|consen 85 V-MAHVHSFGELCPIAAGIIHLGATSCFVTDNADLIELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLT 163 (481)
T ss_pred H-HHHHHHHHhhcchhcceEEeeeeeeeecCCccceechhHHHHHHHHHHHHHHHHHHHHHHhccceecccccCccchhh
Confidence 9 899999999998777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 186 SLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 186 T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
|||++.+-|.+.|.+++++|..+..++....++|+.|+=.+|+
T Consensus 164 tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~ 206 (481)
T KOG2700|consen 164 TFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFL 206 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHH
Confidence 9999999999999999999999999999999999988766654
No 46
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.88 E-value=6.8e-22 Score=167.77 Aligned_cols=99 Identities=41% Similarity=0.562 Sum_probs=91.3
Q ss_pred HHHHHHHHhC-ccCCcc-----ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17728 110 IESELIRRIG-NVGRKL-----HTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (231)
Q Consensus 110 ie~~L~~~~g-~~~~~l-----H~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 183 (231)
+|.+|.+++| ..+++. |+|+||||+++|++++++|+++..+...+..+..++..++++|++++||||||+|+|+
T Consensus 16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~th~q~A~ 95 (231)
T cd01594 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQ 95 (231)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeecccccccCc
Confidence 5667777776 334444 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Q psy17728 184 PISLGHYLLAYASMFRRDIERLLDC 208 (231)
Q Consensus 184 PiT~G~~l~~~~~~l~r~~~rL~~~ 208 (231)
|+|||||+++|.+.|.|+++||.++
T Consensus 96 p~t~g~~~~~~~~~l~~~~~rL~~~ 120 (231)
T cd01594 96 PVTLGYELRAWAQVLGRDLERLEEA 120 (231)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876
No 47
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=64.03 E-value=18 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 60 SIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 60 ~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
.+..++.+.+.|+|++++.....+.+
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45566788999999999988866543
No 48
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=58.99 E-value=46 Score=22.27 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy17728 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYD 91 (231)
Q Consensus 57 i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~ 91 (231)
++.-.+.+....+.|.|+++-|+.|.+.++.-...
T Consensus 17 ~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~ 51 (59)
T PF10925_consen 17 LELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEY 51 (59)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44444456667899999999999999998766544
No 49
>KOG2700|consensus
Probab=54.78 E-value=91 Score=29.49 Aligned_cols=89 Identities=13% Similarity=-0.091 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhC---c---cCCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHhcCccccccccC
Q psy17728 108 MNIESELIRRIG---N---VGRKLHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLA-QLHKHHIMPGFTHF 179 (231)
Q Consensus 108 ~~ie~~L~~~~g---~---~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~-l~~~l~~l~~~L~~~A-~~~~~t~m~GrTH~ 179 (231)
..++.+.++.|- + .-+.+|..+++-|+.--.-..-...++.. +...-.++. .|.+++ ++..=.+|.-+| +
T Consensus 160 A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~-~ld~Lv~k~~gf~~~~~~T-G 237 (481)
T KOG2700|consen 160 AQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVE-KLDSLVTKELGFVPMYIVT-G 237 (481)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHhhcccHHHHH-HHHHHHHHHhCCCcccccc-C
Confidence 466666666652 1 22457777777777655555555556554 333333333 333444 677788999999 9
Q ss_pred CccccccHHHHHHHHHHHH
Q psy17728 180 QFAQPISLGHYLLAYASMF 198 (231)
Q Consensus 180 Q~A~PiT~G~~l~~~~~~l 198 (231)
|++.|.+.+.+++.++.-.
T Consensus 238 Qt~sr~~~~~~~~~la~lg 256 (481)
T KOG2700|consen 238 QTYSRKTDAEEVAPLASLG 256 (481)
T ss_pred CcCCchhHHHHHHHHHHHH
Confidence 9999999999987665443
No 50
>KOG4797|consensus
Probab=50.62 E-value=60 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17728 132 NDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHK 169 (231)
Q Consensus 132 nD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~ 169 (231)
-|.|-|-++..+|+....+.+.+.+|.+....+-+++.
T Consensus 54 MDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 54 MDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999998888777663
No 51
>PF03533 SPO11_like: SPO11 homologue; InterPro: IPR004084 Spo11 is a meiosis-specific protein in yeast that covalently binds to DNA double-strand breaks (DSBs) during the early stages of meiosis []. These DSBs initiate homologous recombination, which is required for chromosomal segregation and generation of genetic diversity during meiosis. Mouse and human homologues of Spo11 have been cloned and characterised. The proteins are 82% identical and share ~25% identity with other family members. Mouse Spo11 has been localised to chromosome 2H4, and human SPO11 to chromosome 20q13.2-q13.3, a region amplified in some breast and ovarian tumours []. Similarity between SPO11 and archaebacterial TOP6A proteins points to evolutionary specialisation of a DNA-cleavage function for meiotic recombination []. Note that the yeast SPO11 protein shares far less similarity to other SPO11 proteins than the human and mouse homologues do to each other.; GO: 0003677 DNA binding, 0007131 reciprocal meiotic recombination
Probab=42.80 E-value=60 Score=20.12 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Q psy17728 192 LAYASMFRRDIERLLDCRRRVNVNP 216 (231)
Q Consensus 192 ~~~~~~l~r~~~rL~~~~~~~~~~p 216 (231)
++|.+.|.||+.-|...+++-..-|
T Consensus 9 ASFf~vLdrHRasLlaal~~gggE~ 33 (43)
T PF03533_consen 9 ASFFEVLDRHRASLLAALRRGGGEP 33 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHccCCCC
Confidence 6799999999999998877654333
No 52
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=38.43 E-value=77 Score=24.91 Aligned_cols=52 Identities=12% Similarity=0.319 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHH
Q psy17728 143 TRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYA 195 (231)
Q Consensus 143 lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~ 195 (231)
.|+.+..|...+..+-..+..++..+..++.|.|--++ |.-..||+.|+..-
T Consensus 72 tr~~l~~il~sIg~la~Nin~i~~Aa~~~~~pd~e~f~-aER~~fGk~fA~ld 123 (147)
T PF07328_consen 72 TRQKLEDILRSIGGLATNINQILKAANRTPRPDYEAFR-AERKAFGKEFADLD 123 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH-HHHHHHHHHHHHHH
Confidence 46677788888899999999999999999999998776 78889999887543
No 53
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=36.18 E-value=21 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHH
Q psy17728 138 DLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASM 197 (231)
Q Consensus 138 a~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~ 197 (231)
.++-.+++.+..|..++...+++|-+...==-.-+--=|+..+.++-+.-.+|+-.|..+
T Consensus 10 ~~K~~lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~q~~AssyYLq~YLsP 69 (70)
T PF10372_consen 10 PLKEQLKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLDIQTLASSYYLQCYLSP 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 788899999999999999999888752211111111225667777777777777777654
No 54
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=31.24 E-value=1.9e+02 Score=24.80 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=42.1
Q ss_pred HHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q psy17728 166 QLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLG 218 (231)
Q Consensus 166 ~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLG 218 (231)
|+.-++...=||. ..-.||..|..+..++..+.+..+++.+........+-|
T Consensus 44 E~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a~~ll~~~~~~~~~~~~~~~~~~g 95 (305)
T CHL00180 44 EKQLNIPLFDRSK-NKASLTEAGELLLRYGNRILALCEETCRALEDLKNLQRG 95 (305)
T ss_pred HHHhCCEEEEecC-CCceECHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 3455677778874 569999999999999999999999999888776655444
No 55
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=31.19 E-value=1e+02 Score=23.71 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=40.4
Q ss_pred ccCCCCCchhh---hhhhcccccchHHHHHHhccccc----chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 13 EQDTPDKPKEL---KQLWTGCFQQSMNEFLQQFNESI----SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 13 ~~~~~~~~~~~---~~l~~gr~~~~~~~~~~~f~~~~----~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
|-|.+|+...- ..+-.|++.+. ++..-.|.... .+...| -+|...+ +.+.+.|+|+++.++.+++..
T Consensus 38 El~~fGM~GvG~If~~Yr~G~i~~D-DEVAv~~~p~~~g~~~ls~pl--VniR~tl---~~a~~~g~i~~~~~~~l~~~a 111 (120)
T PF07812_consen 38 ELAPFGMIGVGRIFEWYRDGEIEDD-DEVAVLHGPAELGYRPLSEPL--VNIRATL---RAAVRAGIISEEEAAALLAAA 111 (120)
T ss_pred HhHhcCCEeehHHHHHHhcCCcCCc-cceeeeecCcccCCccccHHH--HHHHHHH---HHHHHcCCCCHHHHHHHHHHH
Confidence 66788888652 23345555433 23333332211 111111 1344444 445899999999999998887
Q ss_pred HHHH
Q psy17728 86 KDIE 89 (231)
Q Consensus 86 ~~i~ 89 (231)
..+.
T Consensus 112 k~l~ 115 (120)
T PF07812_consen 112 KSLY 115 (120)
T ss_pred HhCC
Confidence 7654
No 56
>PF07408 DUF1507: Protein of unknown function (DUF1507); InterPro: IPR009983 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; however they form alpha helical bundles and are thought to be involved in control of cell shape [].; PDB: 2ODM_B 2GBO_B.
Probab=29.45 E-value=1.3e+02 Score=21.98 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=22.1
Q ss_pred hhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17728 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD 87 (231)
Q Consensus 49 d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~ 87 (231)
|-.+|-+.-++..| .+.|+|+.++++.|...|+.
T Consensus 45 DTQmyGlSreIdFA-----Vrlgli~~~~Gk~ll~~LE~ 78 (90)
T PF07408_consen 45 DTQMYGLSREIDFA-----VRLGLISEEEGKQLLSELER 78 (90)
T ss_dssp HHHHHHHHHHHHHH-----HHTTSS-HHHHHHHHHHHHH
T ss_pred HhHHhchhHHHHHH-----HHhCCccHHHHHHHHHHHHH
Confidence 33443333444544 78999999999999877753
No 57
>PRK06390 adenylosuccinate lyase; Provisional
Probab=27.23 E-value=78 Score=29.77 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhcCccccccccCCccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q psy17728 142 FTRRNIKALIKLLLDTVKQ---LTRLAQLHKHHIMPGFTHFQFAQPI-SLGHYLLAYASMFRRDIERLLDCRRRVNVNPL 217 (231)
Q Consensus 142 ~lr~~~~~l~~~l~~l~~~---L~~~A~~~~~t~m~GrTH~Q~A~Pi-T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pL 217 (231)
.+.+.+..+.+.|..+-+. ....+..|.- |-||-.=- -|+-|.......+.|-.+-+..+...-..+|+
T Consensus 120 ~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q-------~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~r~~~~~~~gav 192 (451)
T PRK06390 120 IIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQ-------HASPITFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPV 192 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhCCC-------cCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 4455555666666555543 2334445533 33332222 35667777777777776666666666678899
Q ss_pred CcceecCCCCC
Q psy17728 218 GSAALGGEFLI 228 (231)
Q Consensus 218 Ggaa~~Gt~~~ 228 (231)
|.++++|+.++
T Consensus 193 Gt~a~~g~~~~ 203 (451)
T PRK06390 193 GTGAALGKDAL 203 (451)
T ss_pred cChhhCCCcHH
Confidence 99999999865
No 58
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=27.14 E-value=2.5e+02 Score=20.47 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=38.2
Q ss_pred HHhcCcccccccc----CCccccccHHHHHHHHHHHHHHHHHHHHHHHH-HcccCCC
Q psy17728 166 QLHKHHIMPGFTH----FQFAQPISLGHYLLAYASMFRRDIERLLDCRR-RVNVNPL 217 (231)
Q Consensus 166 ~~~~~t~m~GrTH----~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~-~~~~~pL 217 (231)
++.-+.+..-|+. .....||..|..+...+..+....+++.+... .+.+.||
T Consensus 41 E~~lg~~Lf~R~~~g~~~~g~~lT~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (99)
T TIGR00637 41 NNLSGEPLVERATGGKGGGGAVLTEYGQRLIQLYDLLERILEKAFSVLEDEVVVKPL 97 (99)
T ss_pred HHHhCCCeEEecCCCCCCCCeeECHHHHHHHHHHHHHHHHHHHHHHHhhceeeeccC
Confidence 3445566666663 57899999999999999999998888877644 3455554
No 59
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=26.65 E-value=3.1e+02 Score=23.72 Aligned_cols=48 Identities=13% Similarity=-0.064 Sum_probs=38.8
Q ss_pred HHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17728 166 QLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213 (231)
Q Consensus 166 ~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~ 213 (231)
++.-++...=||..+--.||..|+.+..++..+....+++.+......
T Consensus 41 E~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~~ 88 (309)
T PRK12683 41 EDELGVEIFIRRGKRLTGLTEPGKELLQIVERMLLDAENLRRLAEQFA 88 (309)
T ss_pred HHHhCCeeEeeCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445567777788655457999999999999999999999987776654
No 60
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.27 E-value=20 Score=24.05 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17728 133 DQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLH 168 (231)
Q Consensus 133 D~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~ 168 (231)
|.|-|-+...+|+..+.+...+..|.+....+..++
T Consensus 2 dLVKtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 2 DLVKTHLMYAVREEVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp -SCCCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788889999999999999988888877766
No 61
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=25.73 E-value=3.5e+02 Score=21.70 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 192 LAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 192 ~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
.+....-.+.+..+..++.|+....+|-...-|-..|.
T Consensus 61 ~~l~~~~~~~L~~Ie~AL~Ri~~G~YG~Ce~CGe~I~~ 98 (159)
T TIGR02890 61 IALREHEERELREIEHALQKIENGTYGICEVCGKPIPY 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeecccCCcccH
Confidence 34555566677888999999999999999888887764
No 62
>PF09920 DUF2150: Uncharacterized protein conserved in archaea (DUF2150); InterPro: IPR014518 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.75 E-value=4e+02 Score=22.24 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q psy17728 55 EDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYD 91 (231)
Q Consensus 55 ~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~ 91 (231)
-|+..+.+.+....+.|-|+++.|...++.+++|...
T Consensus 41 dDv~lA~lKIi~~~~~~~l~keeAl~~L~~v~eIVl~ 77 (190)
T PF09920_consen 41 DDVILACLKIIAAYQNGELSKEEALEELEEVREIVLS 77 (190)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 4677777777788999999999999988888877643
No 63
>PRK12682 transcriptional regulator CysB-like protein; Reviewed
Probab=23.28 E-value=4e+02 Score=22.84 Aligned_cols=50 Identities=6% Similarity=-0.083 Sum_probs=39.7
Q ss_pred HHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy17728 166 QLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVN 215 (231)
Q Consensus 166 ~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~ 215 (231)
|+.-++...=|+..+-..||..|..+..++..+.++.+++.+........
T Consensus 41 E~~lg~~LF~R~~~~~~~lT~~G~~l~~~~~~~l~~~~~~~~~~~~~~~~ 90 (309)
T PRK12682 41 EEELGIEIFIRHGKRLKGLTEPGKAVLDVIERILREVGNIKRIGDDFSNQ 90 (309)
T ss_pred HHHhCCeeEEECCCCcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566777778776656899999999999999999999998776655443
No 64
>KOG3564|consensus
Probab=21.75 E-value=1.4e+02 Score=28.69 Aligned_cols=69 Identities=25% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHhCCC--CCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhhhHHHHHHHHhCccCCccccCCChhhHHHHH
Q psy17728 64 VTMLGERNI--IDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLD 138 (231)
Q Consensus 64 ~~~l~~~Gi--I~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta 138 (231)
++.|.+.|+ |+.... -+..+.+.+..++-+...+.+||| .|--.|+.-+-.....+=.-++++|....+
T Consensus 375 aRGLteeGLYRvsg~~r-----tvk~lkekfLR~Kt~p~~g~~Dih-vic~~lKdFLR~LkePLip~~~~rdf~eAa 445 (604)
T KOG3564|consen 375 ARGLTEEGLYRVSGCDR-----TVKRLKEKFLRGKTTPHLGNDDIH-VICCCLKDFLRNLKEPLIPFRLRRDFMEAA 445 (604)
T ss_pred HccccccceeeccccHH-----HHHHHHHHHhccCCCCccCCcchh-HHHHHHHHHHHhcccccccchHHHHHHHHh
Confidence 355566777 443221 122233333344444455789998 555555555543333444456666665544
No 65
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=21.74 E-value=2.9e+02 Score=22.88 Aligned_cols=51 Identities=12% Similarity=-0.065 Sum_probs=41.7
Q ss_pred HHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy17728 163 RLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214 (231)
Q Consensus 163 ~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~ 214 (231)
..-|++-++...-||+.. -.||..|..+..++..+....+++.+.......
T Consensus 33 ~~LE~~lg~~Lf~R~~~~-~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~~ 83 (279)
T TIGR03339 33 RKLEERYGVELFHRNGRR-LELTDAGHRLLPIVERLFQQEAEAEFLLRESGA 83 (279)
T ss_pred HHHHHHhCCccEEEcCCe-EEEChhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344567788899998655 999999999999999999998888887766543
No 66
>PRK12684 transcriptional regulator CysB-like protein; Reviewed
Probab=20.86 E-value=3.9e+02 Score=23.10 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=39.8
Q ss_pred HHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy17728 165 AQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214 (231)
Q Consensus 165 A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~ 214 (231)
-+++-++...-||-.+--+||.+|..+..++..+.+..+++.+.......
T Consensus 40 LE~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~~~ 89 (313)
T PRK12684 40 LEDELGVEIFTRHGKRLRGLTEPGRIILASVERILQEVENLKRVGKEFAA 89 (313)
T ss_pred HHHHhCCeeEEEcCCcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788888875444579999999999999999999999977665543
Done!