Query psy17728
Match_columns 231
No_of_seqs 161 out of 1403
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 21:28:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 100.0 1.8E-52 6.2E-57 387.6 19.7 204 25-228 2-206 (457)
2 2e9f_A Argininosuccinate lyase 100.0 1.4E-52 4.8E-57 388.9 17.8 205 25-229 4-210 (462)
3 1k7w_A Delta 2 crystallin; eye 100.0 4.2E-52 1.4E-56 386.2 19.7 207 22-228 6-212 (468)
4 1fur_A Fumarase C, FUMC; hydro 100.0 1.8E-49 6.2E-54 368.2 18.9 214 10-228 4-237 (467)
5 1vdk_A Fumarase C, fumarate hy 100.0 2.7E-49 9.4E-54 367.0 18.7 214 10-228 3-237 (466)
6 1jsw_A L-aspartase, L-aspartat 100.0 1E-48 3.5E-53 364.2 20.1 214 10-228 5-240 (478)
7 1yfm_A Fumarase, YFUM; lyase, 100.0 1.4E-48 4.8E-53 363.3 18.1 214 10-228 28-262 (488)
8 4adm_A Fumarase C, fumarate hy 100.0 1.4E-47 4.8E-52 356.7 18.6 213 8-227 30-257 (495)
9 3r6q_A Aspartase; aspartate am 100.0 1.5E-46 5.3E-51 348.2 18.3 214 10-228 5-237 (468)
10 3ocf_A Fumarate lyase:delta cr 100.0 5.4E-46 1.8E-50 344.8 18.5 217 6-227 19-256 (478)
11 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 9.1E-46 3.1E-50 342.7 16.0 197 25-229 6-208 (454)
12 3c8t_A Fumarate lyase; structu 100.0 3.4E-45 1.2E-49 338.5 16.9 195 25-229 6-202 (451)
13 3gtd_A Fumarase C, fumarate hy 100.0 5.1E-44 1.7E-48 331.2 17.8 215 9-228 24-258 (482)
14 3e04_A Fumarase, fumarate hydr 100.0 4.7E-44 1.6E-48 331.7 15.7 213 10-228 30-264 (490)
15 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 4.6E-44 1.6E-48 322.2 14.5 196 25-228 9-205 (359)
16 1dof_A Adenylosuccinate lyase; 100.0 1.4E-43 4.8E-48 323.6 16.6 186 26-229 5-193 (403)
17 1c3c_A Protein (adenylosuccina 100.0 3.1E-43 1.1E-47 323.7 18.1 185 30-229 3-191 (429)
18 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 1.1E-43 3.7E-48 328.5 12.9 196 26-229 5-204 (450)
19 4hgv_A Fumarase C, fumarate hy 100.0 9.7E-43 3.3E-47 324.5 18.2 218 9-230 35-273 (495)
20 2pfm_A Adenylosuccinate lyase; 100.0 1.6E-42 5.4E-47 320.1 18.7 186 29-229 12-203 (444)
21 4eei_A Adenylosuccinate lyase; 100.0 5.5E-43 1.9E-47 322.4 12.5 189 29-229 3-192 (438)
22 2qga_B Adenylosuccinate lyase; 100.0 2.6E-43 9E-48 327.0 8.8 189 25-225 9-212 (465)
23 3bhg_A Adenylosuccinate lyase; 100.0 2.7E-42 9.3E-47 319.7 12.6 190 25-225 13-216 (459)
24 1yis_A Adenylosuccinate lyase; 100.0 3.8E-41 1.3E-45 313.5 14.1 191 25-226 9-201 (478)
25 2ptr_A Adenylosuccinate lyase; 100.0 1.3E-40 4.5E-45 308.6 14.0 191 25-225 10-215 (462)
26 2j91_A Adenylosuccinate lyase; 100.0 2.7E-40 9.2E-45 309.1 13.5 189 26-224 38-227 (503)
27 1t0c_A Insulin; type I beta-tu 34.2 13 0.00046 20.0 0.8 17 212-228 7-23 (31)
28 1fgl_B HIV-1 GAG protein; cycl 32.6 9.8 0.00033 20.5 0.1 15 175-189 1-15 (26)
29 2odm_A YLAN, UPF0358 protein M 31.7 75 0.0026 22.2 4.5 21 68-88 60-80 (91)
30 3dcf_A Transcriptional regulat 30.0 1.7E+02 0.0057 21.7 9.4 61 112-172 55-126 (218)
31 3him_A Probable transcriptiona 27.9 1.8E+02 0.0061 21.3 11.8 87 76-174 16-113 (211)
32 3i71_A Ethanolamine utilizatio 26.3 47 0.0016 21.4 2.5 29 182-210 16-44 (68)
33 3nxc_A HTH-type protein SLMA; 24.4 2.1E+02 0.0073 21.0 8.3 61 112-172 49-120 (212)
34 2fb5_A Hypothetical membrane s 23.6 12 0.0004 30.4 -0.9 87 134-220 9-95 (205)
35 2qib_A TETR-family transcripti 23.2 2.4E+02 0.0083 21.4 7.0 6 67-72 26-31 (231)
36 2gbo_A UPF0358 protein EF2458; 23.0 99 0.0034 22.1 3.9 21 68-88 62-82 (104)
37 2rek_A Putative TETR-family tr 21.9 2.4E+02 0.0082 20.6 10.9 59 112-170 39-107 (199)
38 2yqy_A TT2238, hypothetical pr 21.4 1.4E+02 0.0048 21.7 5.0 62 148-210 107-168 (169)
39 2oi8_A Putative regulatory pro 21.2 2.7E+02 0.0094 21.1 8.2 85 76-172 16-107 (216)
40 3pas_A TETR family transcripti 20.8 2.4E+02 0.0081 20.2 7.7 60 112-171 32-102 (195)
41 3ter_A Mammalian stromal inter 20.7 2.5E+02 0.0087 21.0 6.0 39 124-163 84-122 (136)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=1.8e-52 Score=387.63 Aligned_cols=204 Identities=36% Similarity=0.615 Sum_probs=196.6
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceec-ccC
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VEL 103 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~-~~~ 103 (231)
++|+|||++++++.+..|+.+..+|.++++++|.+++||++++.+.|+||++++++|.++|++|..+...++|+++ ..+
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 81 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDA 81 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCC
T ss_pred cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999877777888776 689
Q ss_pred cchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17728 104 EDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (231)
Q Consensus 104 edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 183 (231)
||+||++|+++.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 82 ~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~ 161 (457)
T 1tj7_A 82 EDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQ 161 (457)
T ss_dssp SSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEE
T ss_pred CcHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcCCe
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 184 PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
||||||||++|+++|.||++||.+++++++.+||||++++||+++
T Consensus 162 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~ 206 (457)
T 1tj7_A 162 PVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYE 206 (457)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSC
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCC
Confidence 999999999999999999999999999999999999999999987
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-52 Score=388.85 Aligned_cols=205 Identities=42% Similarity=0.684 Sum_probs=189.3
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e 104 (231)
++||+||++++++.+++|+.+..+|.+++++++.+.+||++++.+.|+||++++++|.++|++|..+...++|+++..+|
T Consensus 4 ~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~~~ 83 (462)
T 2e9f_A 4 RTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREELE 83 (462)
T ss_dssp ----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCCCGGGC
T ss_pred cccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCcCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999887778898888999
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccccccCCcc
Q psy17728 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHH--IMPGFTHFQFA 182 (231)
Q Consensus 105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t--~m~GrTH~Q~A 182 (231)
|+|+++|+++.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|+++ +||||||+|+|
T Consensus 84 dv~~~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrTHlQ~A 163 (462)
T 2e9f_A 84 DVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRA 163 (462)
T ss_dssp SHHHHHHHHHHHHHCTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEETTEEE
T ss_pred chHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCccccCcccCccC
Confidence 9999999999999998889999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|||||||||++|+++|.||++||.+++++++.+||||++++||++|-
T Consensus 164 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~ 210 (462)
T 2e9f_A 164 QPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPI 210 (462)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCC
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999863
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=4.2e-52 Score=386.18 Aligned_cols=207 Identities=40% Similarity=0.593 Sum_probs=188.7
Q ss_pred hhhhhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecc
Q psy17728 22 ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101 (231)
Q Consensus 22 ~~~~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~ 101 (231)
++.++|++||+++++++..+|+.+..+|..++++++.+.+||++++.+.|+||++.+++|.++|++|..+...++|+++.
T Consensus 6 ~~~~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~ 85 (468)
T 1k7w_A 6 RGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQ 85 (468)
T ss_dssp -------------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCT
T ss_pred CcccccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcccCccCC
Confidence 34469999999999999999999999999999999999999999999999999999999999999998877778898888
Q ss_pred cCcchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCc
Q psy17728 102 ELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQF 181 (231)
Q Consensus 102 ~~edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~ 181 (231)
.+||+||++++++.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+
T Consensus 86 ~~~dv~m~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~ 165 (468)
T 1k7w_A 86 SDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQK 165 (468)
T ss_dssp TCCSHHHHHHHHHHHHHCGGGGGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred CCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 182 AQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 182 A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
||||||||||++|+++|.||++||.+++++++.+||||++++||++|
T Consensus 166 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~ 212 (468)
T 1k7w_A 166 AQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLD 212 (468)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTC
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCC
Confidence 99999999999999999999999999999999999999999999886
No 4
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=1.8e-49 Score=368.18 Aligned_cols=214 Identities=18% Similarity=0.245 Sum_probs=197.2
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhcccccch-hhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESISV-DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD 87 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~~~-d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~ 87 (231)
-|.|+|+.|+.+ |..++||+ ++++.+++|+.+... +..++.+.+.+.+||++++.+.|+||++++++|.++|++
T Consensus 4 ~r~e~d~~g~~~vp~~~~~g~----~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~ 79 (467)
T 1fur_A 4 VRSEKDSMGAIDVPADKLWGA----QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADE 79 (467)
T ss_dssp CEEEEETTEEEEECTTCCCCH----HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred cCccccCCCCccCCcccccch----hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 589999999997 56689998 899999999988766 777788899999999999999999999999999999999
Q ss_pred HHhhhhcCCceecc----cCcchhhhHHHHH----HHHhC-ccCCc--cc------cCCChhhHHHHHHHHHHHHHHHH-
Q psy17728 88 IEYDIEHGKVELKV----ELEDIHMNIESEL----IRRIG-NVGRK--LH------TGRSRNDQVVLDLRLFTRRNIKA- 149 (231)
Q Consensus 88 i~~~~~~~~~~~~~----~~edv~~~ie~~L----~~~~g-~~~~~--lH------~G~SrnD~v~Ta~~L~lr~~~~~- 149 (231)
|..+...+.|+++. .++|+||++|++| .+++| +.|+| || +|+|||||++|+++|++|+++..
T Consensus 80 i~~~~~~~~f~~~~~q~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~ 159 (467)
T 1fur_A 80 VLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQ 159 (467)
T ss_dssp HHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccccccchhhhccccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHHHHH
Confidence 98776667787765 6799999999988 67788 67777 88 99999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 150 LIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 150 l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
|.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||+|+ ||+++
T Consensus 160 l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAv-GT~~~ 237 (467)
T 1fur_A 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV-GTGLN 237 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-SSCTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchh-cCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999777 77655
No 5
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=2.7e-49 Score=367.00 Aligned_cols=214 Identities=18% Similarity=0.216 Sum_probs=196.3
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhcccccc-h--hhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESIS-V--DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~~-~--d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
-|.|+|+.|+.+ |..++||+ ++++.+.+|+.+.. + +..++.+.+.+.+||++++.+.|+||++++++|.++|
T Consensus 3 ~r~e~d~~g~~~vp~~~~~g~----~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~ 78 (466)
T 1vdk_A 3 YRIERDTMGEVRVPADKYWGA----QTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAA 78 (466)
T ss_dssp -CEEEETTEEEECCTTCCCCH----HHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred ccccccCCCCcCCCcccccch----hhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 489999999997 56689988 89999999998864 5 6777788899999999999999999999999999999
Q ss_pred HHHHhhhhcCCceecc----cCcchhhhHHHHH----HHHhC-ccC-Cccc------cCCChhhHHHHHHHHHHHHHHH-
Q psy17728 86 KDIEYDIEHGKVELKV----ELEDIHMNIESEL----IRRIG-NVG-RKLH------TGRSRNDQVVLDLRLFTRRNIK- 148 (231)
Q Consensus 86 ~~i~~~~~~~~~~~~~----~~edv~~~ie~~L----~~~~g-~~~-~~lH------~G~SrnD~v~Ta~~L~lr~~~~- 148 (231)
++|..+...+.|++++ .++|+||++|++| .+++| +.| ++|| +|+|||||++|+++|++|+++.
T Consensus 79 ~~i~~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~ 158 (466)
T 1vdk_A 79 EEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQ 158 (466)
T ss_dssp HHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCchhhhccccccccccHHHHHHHHHHHHhCccccccccccccCcCCCCChhhHHHHHHHHHHHHHHHH
Confidence 9998876667788776 7899999999988 77888 567 7888 9999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.|.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||+|+ ||+++
T Consensus 159 ~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~Av-GT~~~ 237 (466)
T 1vdk_A 159 RLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAV-GTGLN 237 (466)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTT-SSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-CCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999876 77655
No 6
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=1e-48 Score=364.20 Aligned_cols=214 Identities=16% Similarity=0.165 Sum_probs=195.0
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-ch--hhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SV--DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~--d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
-|.|+|+.|+.+ |..++||+ ++++.+++|+.+. .+ +..++++.+.+.+||++++.+.|+||++++++|.++|
T Consensus 5 ~r~e~d~~g~~~vp~~~~~g~----~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a~ 80 (478)
T 1jsw_A 5 IRIEEDLLGTREVPADAYYGV----HTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAAC 80 (478)
T ss_dssp EEEEECSSCEEEEESSCCCCH----HHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCcccccCCCcCCCCccccch----HHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 589999999997 56679988 7999999999875 56 7778889999999999999999999999999999999
Q ss_pred HHHH-hhhhcCCceecc----cCcchhhhHHH----HHHHHhC-ccCC--ccc------cCCChhhHHHHHHHHHHHHHH
Q psy17728 86 KDIE-YDIEHGKVELKV----ELEDIHMNIES----ELIRRIG-NVGR--KLH------TGRSRNDQVVLDLRLFTRRNI 147 (231)
Q Consensus 86 ~~i~-~~~~~~~~~~~~----~~edv~~~ie~----~L~~~~g-~~~~--~lH------~G~SrnD~v~Ta~~L~lr~~~ 147 (231)
++|. .+...+.|++++ .++|+||++|+ .+.+++| +.|+ +|| +|+|||||++|+++|++|+++
T Consensus 81 ~~i~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l 160 (478)
T 1jsw_A 81 DEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL 160 (478)
T ss_dssp HHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhccCCccchhhccCcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHHHHHHHHHHHHHH
Confidence 9998 776777888887 79999999997 4456667 4565 677 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCC
Q psy17728 148 KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFL 227 (231)
Q Consensus 148 ~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~ 227 (231)
..|.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++++++.+||||+|+ ||.+
T Consensus 161 ~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~Av-GT~~ 239 (478)
T 1jsw_A 161 IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAI-GTGL 239 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSS-SSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccc-cCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876 6655
Q ss_pred C
Q psy17728 228 I 228 (231)
Q Consensus 228 ~ 228 (231)
+
T Consensus 240 ~ 240 (478)
T 1jsw_A 240 N 240 (478)
T ss_dssp S
T ss_pred c
Confidence 4
No 7
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=1.4e-48 Score=363.29 Aligned_cols=214 Identities=18% Similarity=0.216 Sum_probs=191.2
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhcccccc---hhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESIS---VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~~---~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
-|.|+|+.|+.+ |..++||+ ++++.+++|+.+.. ++..++++.+.+..||++++.+.|+||++.+++|.++|
T Consensus 28 ~r~e~d~~g~~~vp~~~~~g~----~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a~ 103 (488)
T 1yfm_A 28 FRTETDAFGEIHVPADKYWGA----QTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAA 103 (488)
T ss_dssp EEEECSSSCCEEEESSCCCCH----HHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCcccccCCCcCCCccchhch----HHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 588999999997 56689988 89999999998875 56667788899999999999999999999999999999
Q ss_pred HHHHhhhhcCCceecc----cCcchhhhHHHHHH----HHhC-ccC-Cccc------cCCChhhHHHHHHHHHHHHHHH-
Q psy17728 86 KDIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVG-RKLH------TGRSRNDQVVLDLRLFTRRNIK- 148 (231)
Q Consensus 86 ~~i~~~~~~~~~~~~~----~~edv~~~ie~~L~----~~~g-~~~-~~lH------~G~SrnD~v~Ta~~L~lr~~~~- 148 (231)
++|..+...+.|++++ .++|+||++|++|. +++| +.| ++|| +|+|||||++|+++|++|+++.
T Consensus 104 ~ei~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~ 183 (488)
T 1yfm_A 104 DEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQN 183 (488)
T ss_dssp HHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHH
Confidence 9998876667788877 78999999999885 6677 556 7788 9999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.|.+.|..|+++|.++|++|++++||||||+|+|||+||||||++|+++|.||++||.+++++++.+||||+|+ ||+++
T Consensus 184 ~l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv-GT~~~ 262 (488)
T 1yfm_A 184 ELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAV-GTGLN 262 (488)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-SSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999776 66554
No 8
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=1.4e-47 Score=356.70 Aligned_cols=213 Identities=22% Similarity=0.256 Sum_probs=188.8
Q ss_pred CCCCcccCCCCCch-hhhhhhcccccchHHHHHHhcccccc-hhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 8 DNEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESIS-VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~~-~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
.+-|.|+|+.|+.+ |..++||+ ++++.+++|+.+.. +...++.....+..|+++++.+.|+||++++++|.++|
T Consensus 30 ~~~r~e~d~~g~~~vp~~~~~G~----~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~ 105 (495)
T 4adm_A 30 ANYRIEHDTMGEVRVPAKALWRA----QTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAA 105 (495)
T ss_dssp -CEEEEEETTEEEEEETTCSCCH----HHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred cccCCccCcCCCccCChhhhcCc----hhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44689999999997 56789998 99999999998762 23333344455689999999999999999999999999
Q ss_pred HHHHhhhhcCCceecc----cCcchhhhHHHHHHHHh--CccCCcccc------CCChhhHHHHHHHHHHHHHHH-HHHH
Q psy17728 86 KDIEYDIEHGKVELKV----ELEDIHMNIESELIRRI--GNVGRKLHT------GRSRNDQVVLDLRLFTRRNIK-ALIK 152 (231)
Q Consensus 86 ~~i~~~~~~~~~~~~~----~~edv~~~ie~~L~~~~--g~~~~~lH~------G~SrnD~v~Ta~~L~lr~~~~-~l~~ 152 (231)
++|..+...+.|++++ .++|+||++|++|.+++ | |+|||+ |+|||||++|+++|++|+.+. .|.+
T Consensus 106 ~ei~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra~lG--G~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~ 183 (495)
T 4adm_A 106 AEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAKG--GVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIP 183 (495)
T ss_dssp HHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHT--TCCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhCcccCCCCcchhhccccccccccHHHHHHHHHHhC--CCccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 9998877777888776 57999999999999954 7 666775 999999999999999999996 6999
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCC
Q psy17728 153 LLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFL 227 (231)
Q Consensus 153 ~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~ 227 (231)
.|..|+++|.++|++|++++||||||+|+|||+||||||++|+++|.||++||.+++++++.+||||+|+ ||++
T Consensus 184 ~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAv-GT~~ 257 (495)
T 4adm_A 184 ALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAV-GTGL 257 (495)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTT-SSCT
T ss_pred HHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeee-cCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999776 6754
No 9
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=1.5e-46 Score=348.19 Aligned_cols=214 Identities=20% Similarity=0.188 Sum_probs=191.0
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhcccc-cchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNES-ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD 87 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~-~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~ 87 (231)
.|.|+|+.|+.+ |...+||. ++.+.+++|..+ ..+...+++..+.+..|+++++.+.|+||++.+++|.++|++
T Consensus 5 ~r~e~d~~g~~~vp~~~~yg~----qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~~ 80 (468)
T 3r6q_A 5 VRIEKDFLGEKEIPKDAYYGV----QTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADE 80 (468)
T ss_dssp CEEEEETTEEEEECTTCCCCH----HHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCccccCCCccCCcccccCH----HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 589999999997 56678887 999999999755 345566777788899999999999999999999999999999
Q ss_pred HHhhhhcCCceecc----cCcchhhhHHHHHHH----HhCc-cCCc--cc------cCCChhhHHHHHHHHHHHHHHHHH
Q psy17728 88 IEYDIEHGKVELKV----ELEDIHMNIESELIR----RIGN-VGRK--LH------TGRSRNDQVVLDLRLFTRRNIKAL 150 (231)
Q Consensus 88 i~~~~~~~~~~~~~----~~edv~~~ie~~L~~----~~g~-~~~~--lH------~G~SrnD~v~Ta~~L~lr~~~~~l 150 (231)
|..+...+.|++++ .++++||+++++|.+ ++|+ .|+| || +|+|||||++|+++|++|+.+..|
T Consensus 81 i~~~~~~~~f~~~~~~~g~gt~~nmnvnevia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~~l 160 (468)
T 3r6q_A 81 VIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQL 160 (468)
T ss_dssp HHTTTTGGGCCSCSSCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccccCCCccHHhccccccccccHHHHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHHHH
Confidence 98776667787765 378999999876654 4674 4665 88 699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 151 ~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.+.|..|+++|.++|++|++++||||||+|+|||+||||||++|+++|.||++||.+++++++.+||||+|+ ||+++
T Consensus 161 ~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv-GT~~~ 237 (468)
T 3r6q_A 161 IETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAV-GTGLN 237 (468)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTT-SSCTT
T ss_pred HHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeec-CCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999776 77664
No 10
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=5.4e-46 Score=344.75 Aligned_cols=217 Identities=22% Similarity=0.214 Sum_probs=185.1
Q ss_pred CCCCCCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chh--hhccHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17728 6 PEDNEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81 (231)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d--~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I 81 (231)
|....|.|+|+.|+.+ |...+||. ++.+.+++|..+. .+. ..+++....+..|+++++.+.|+||++.+++|
T Consensus 19 ~~~~~r~e~d~~g~~~vp~~~~yG~----qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI 94 (478)
T 3ocf_A 19 PGSMTRREQDSLGERDIPMDAYFGI----QTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAI 94 (478)
T ss_dssp ----CEEEEETTEEEEECTTCSSCH----HHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCCCcccccccCCCccCCcccccCH----HHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445689999999998 56678888 9999999997654 222 35556778888888999999999999999999
Q ss_pred HHHHHHHHhhhhcCCceecc----cCcchhhhHHHHHHHH----hC-ccCCc--cc------cCCChhhHHHHHHHHHHH
Q psy17728 82 VKTLKDIEYDIEHGKVELKV----ELEDIHMNIESELIRR----IG-NVGRK--LH------TGRSRNDQVVLDLRLFTR 144 (231)
Q Consensus 82 ~~al~~i~~~~~~~~~~~~~----~~edv~~~ie~~L~~~----~g-~~~~~--lH------~G~SrnD~v~Ta~~L~lr 144 (231)
.++|++|..+...+.|+++. .++++||++|++|.++ +| +.|+| || +|+||||+++|+++|++|
T Consensus 95 ~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~ 174 (478)
T 3ocf_A 95 VAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALL 174 (478)
T ss_dssp HHHHHHHHTTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccccCCCcchhhccCCccccchHHHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHH
Confidence 99999998776667788765 5789999999876554 57 46777 99 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecC
Q psy17728 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGG 224 (231)
Q Consensus 145 ~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~G 224 (231)
+.+..|.+.|..|+++|.++|++|++++||||||+|+|||+|||+||++|+++|.||++||.+++++++.+||||+|+ |
T Consensus 175 ~~l~~L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAv-G 253 (478)
T 3ocf_A 175 LSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAI-G 253 (478)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCeee-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999776 7
Q ss_pred CCC
Q psy17728 225 EFL 227 (231)
Q Consensus 225 t~~ 227 (231)
|++
T Consensus 254 Tg~ 256 (478)
T 3ocf_A 254 TRI 256 (478)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 11
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=9.1e-46 Score=342.71 Aligned_cols=197 Identities=23% Similarity=0.287 Sum_probs=175.0
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCce--eccc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE--LKVE 102 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~--~~~~ 102 (231)
.+|+|||+.. ++...|++.. ++++.+.+.+||++++.+.|+||++.+++|.++|++|...+..+.+. ....
T Consensus 6 ~~~~~ry~~~--~~~~~~sd~~-----~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 78 (454)
T 1q5n_A 6 QLYASLFYQR--DVTEIFSDRA-----LVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLA 78 (454)
T ss_dssp CTTHHHHSCH--HHHHHTSHHH-----HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCHHHHHHHHHHH
T ss_pred CccccccCcH--HHHHHcCcHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHhhcc
Confidence 4899999874 6889998744 44678888999999999999999999999999998664332111111 1236
Q ss_pred CcchhhhHHHHHHHHh----CccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy17728 103 LEDIHMNIESELIRRI----GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTH 178 (231)
Q Consensus 103 ~edv~~~ie~~L~~~~----g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH 178 (231)
.||| +++++.|.+++ |+.+++||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||
T Consensus 79 ~~dV-ia~~~~l~e~~g~~~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTH 157 (454)
T 1q5n_A 79 GNIA-IPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTW 157 (454)
T ss_dssp SSSH-HHHHHHHHHHHHTTCTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred CCcH-HHHHHHHHHHhccccCCccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccc
Confidence 8999 68999999999 778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 179 FQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 179 ~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
+|+||||||||||++|+++|.||++||.+++++++.+|||||+|+|+++|+
T Consensus 158 lQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~ 208 (454)
T 1q5n_A 158 LQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQD 208 (454)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGTT
T ss_pred CCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHhhcCccccc
Confidence 999999999999999999999999999999999999999999999998864
No 12
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=3.4e-45 Score=338.53 Aligned_cols=195 Identities=22% Similarity=0.253 Sum_probs=172.4
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--HHhhhhcCCceeccc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IEYDIEHGKVELKVE 102 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~--i~~~~~~~~~~~~~~ 102 (231)
.+|+|||+.. ++...|++.. ++.+.+.+.+||++++.+.|+||++.+++|.++|++ +..+.-.. .....
T Consensus 6 ~~~~~ry~~~--~~~~~~sd~~-----~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~~~--~~~~~ 76 (451)
T 3c8t_A 6 PLYGRSFADD--KMRELFSAQS-----FISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLRD--DTEIV 76 (451)
T ss_dssp CCSSCCCSCH--HHHHHTSHHH-----HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHHHH--HHHHH
T ss_pred CccccccCcH--HHHHHcCCHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHHHH--HhhcC
Confidence 4899999874 6899998754 446678888999999999999999999999999963 11000000 01236
Q ss_pred CcchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17728 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (231)
Q Consensus 103 ~edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A 182 (231)
.+|| +++++.|.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|
T Consensus 77 ~~dV-ia~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A 155 (451)
T 3c8t_A 77 GYPI-LPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHA 155 (451)
T ss_dssp SSSH-HHHHHHHHHHHGGGGGGSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CCcH-HHHHHHHHHHcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeecccCCCCc
Confidence 7999 588999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|||||||||++|+++|.||++||.+++++++.+|||||+|+|+++|+
T Consensus 156 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~ 202 (451)
T 3c8t_A 156 LPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGT 202 (451)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCCTTSSCGGGTT
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhcCccccc
Confidence 99999999999999999999999999999999999999999998865
No 13
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=5.1e-44 Score=331.16 Aligned_cols=215 Identities=22% Similarity=0.220 Sum_probs=188.4
Q ss_pred CCCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy17728 9 NEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86 (231)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~ 86 (231)
+-|.|+|+.|+.+ |...+||. ++.+.+.+|..+. ..+..+++....+..|+++++.+.|+||++.+++|.++|+
T Consensus 24 ~~r~e~d~~g~~~vp~~~~~g~----qt~Ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~~ 99 (482)
T 3gtd_A 24 NYRIESDSFGEIQIEEKFYWGA----QTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAID 99 (482)
T ss_dssp CEEEEEETTEEEEEETTCCCCH----HHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCcCccccCCCccCCcccccCH----HHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3589999999998 56789988 9999999998764 4455666777788888889999999999999999999999
Q ss_pred HHHhhhhcCCceecc----cCcchhhhHHHHHH----HHhC-ccCCc--------cccCCChhhHHHHHHHHHHHHHHH-
Q psy17728 87 DIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVGRK--------LHTGRSRNDQVVLDLRLFTRRNIK- 148 (231)
Q Consensus 87 ~i~~~~~~~~~~~~~----~~edv~~~ie~~L~----~~~g-~~~~~--------lH~G~SrnD~v~Ta~~L~lr~~~~- 148 (231)
+|..+...+.|+++. .+++.||+++++|. +++| +.|+| ||+|+||||+++|+++|++++.+.
T Consensus 100 ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~ 179 (482)
T 3gtd_A 100 RILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQ 179 (482)
T ss_dssp HHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 998876678898775 46788888766655 5566 55544 456999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
.|.+.|..|+++|.++|++|++++||||||+|+|||+||||||++|+++|.||++||.+++++++.+||||+|+ ||+++
T Consensus 180 ~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAv-GT~~~ 258 (482)
T 3gtd_A 180 QLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAV-GTGIN 258 (482)
T ss_dssp THHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTT-SSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-cCCCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999985 77654
No 14
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=331.75 Aligned_cols=213 Identities=18% Similarity=0.177 Sum_probs=187.1
Q ss_pred CCcccCCCCCch-hhhhhhcccccchHHHHHHhcccccc---hhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy17728 10 EEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESIS---VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85 (231)
Q Consensus 10 ~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~~---~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al 85 (231)
-|.|+|+.|+.+ |..++||. +|.+.+++|..+.. ....+++....+..|+++++.+.| ||++.+++|.++|
T Consensus 30 ~r~e~D~~G~~~vp~~~~~g~----qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~G-l~~~~a~aI~~a~ 104 (490)
T 3e04_A 30 FRIEYDTFGELKVPNDKYYGA----QTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYG-LDPKIANAIMKAA 104 (490)
T ss_dssp EEEEEETTEEEEEETTCCCCH----HHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGT-CCHHHHHHHHHHH
T ss_pred CCcccccCcCccCcchhhhhH----HHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-CCHHHHHHHHHHH
Confidence 599999999998 56789998 99999999987753 335666777788888999999999 9999999999999
Q ss_pred HHHHhhhhcCCceecc----cCcchhhhHHHHHH----HHhC-ccCCc--cc------cCCChhhHHHHHHHHHHHHHHH
Q psy17728 86 KDIEYDIEHGKVELKV----ELEDIHMNIESELI----RRIG-NVGRK--LH------TGRSRNDQVVLDLRLFTRRNIK 148 (231)
Q Consensus 86 ~~i~~~~~~~~~~~~~----~~edv~~~ie~~L~----~~~g-~~~~~--lH------~G~SrnD~v~Ta~~L~lr~~~~ 148 (231)
++|..+...+.|+++. .++++||+++++|. +++| +.|+| || +|+||||+++|+++|++++.+.
T Consensus 105 ~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~ 184 (490)
T 3e04_A 105 DEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVH 184 (490)
T ss_dssp HHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHH
Confidence 9999877777898765 47889998665555 4557 55655 35 5999999999999999998885
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCC
Q psy17728 149 -ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFL 227 (231)
Q Consensus 149 -~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~ 227 (231)
.|.+.|..|+++|.++|++|++++||||||+|+|||+||||||++|+++|.||++||.+++++++.+||||+|+ ||++
T Consensus 185 ~~L~~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAv-GTg~ 263 (490)
T 3e04_A 185 EVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV-GTGL 263 (490)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTT-SSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-cCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999986 7765
Q ss_pred C
Q psy17728 228 I 228 (231)
Q Consensus 228 ~ 228 (231)
+
T Consensus 264 ~ 264 (490)
T 3e04_A 264 N 264 (490)
T ss_dssp T
T ss_pred c
Confidence 4
No 15
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=4.6e-44 Score=322.19 Aligned_cols=196 Identities=20% Similarity=0.218 Sum_probs=166.6
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e 104 (231)
.+|+++|+++ ++...|++...+.. .+.+.+|+++++.+.|+||++++++|.++|+++..+...-... ....+
T Consensus 9 ~l~~~~~~~~--~m~~~fs~~~~i~~-----~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~~~~~-~~~~~ 80 (359)
T 2fel_A 9 PFLSGLFGDS--EIIELFSAKADIDA-----MIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALRHG-VAKDG 80 (359)
T ss_dssp TTTHHHHCCH--HHHGGGSHHHHHHH-----HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHHHHHH-HHHHS
T ss_pred cccccccCCH--HHHHHcCcHHHHHH-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHHHHhh-ccccC
Confidence 3677777654 48999998776643 3445577889999999999999999999998765332110000 11123
Q ss_pred chhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccc
Q psy17728 105 DIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183 (231)
Q Consensus 105 dv~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 183 (231)
+.+.++++.|.+++| +.+++||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||
T Consensus 81 ~~~~~~~~~l~~~~g~~~~~~vH~G~SsnDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~ 160 (359)
T 2fel_A 81 VVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAI 160 (359)
T ss_dssp SSHHHHHHHHHTTSCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CcHHHHHHHHHHHcCccccchhcCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccc
Confidence 345678888888888 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCC
Q psy17728 184 PISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228 (231)
Q Consensus 184 PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~ 228 (231)
||||||||++|+++|.||++||.+++++++.+|||||+|+|+++|
T Consensus 161 P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGT~~~~~ 205 (359)
T 2fel_A 161 GITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLG 205 (359)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCTTSSCTTTG
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHhccCccCc
Confidence 999999999999999999999999999999999999999998876
No 16
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=1.4e-43 Score=323.55 Aligned_cols=186 Identities=22% Similarity=0.189 Sum_probs=163.1
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHHHHhhhhcCCceeccc
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT---LKDIEYDIEHGKVELKVE 102 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~a---l~~i~~~~~~~~~~~~~~ 102 (231)
+|++||+. .++...|++ ..++++.+.+..||++++.+.|+||++.+++|.++ ++.+... ....
T Consensus 5 p~~~ry~~--~~~~~i~sd-----~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~d~~~~~~~-------~~~~ 70 (403)
T 1dof_A 5 PFDWRYGS--EEIRRLFTN-----EAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRL-------ERET 70 (403)
T ss_dssp GGGTTSSC--HHHHTTSSH-----HHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------------
T ss_pred CcccccCc--HHHHHHcCh-----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHH-------hhcc
Confidence 48889987 458888886 44556788889999999999999999999999887 1111111 1125
Q ss_pred CcchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17728 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (231)
Q Consensus 103 ~edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A 182 (231)
.||| +++++.|.+++| |+|||+|+|||||++|+++|++|+.+..|.+.|..|+++|.++|++|++++||||||+|+|
T Consensus 71 ~~dV-ia~~~~l~e~~G--g~~vH~g~SsnD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A 147 (403)
T 1dof_A 71 GHDI-LSLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWA 147 (403)
T ss_dssp -CHH-HHHHHHHHHHHC--CSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CCcH-HHHHHHHHHHcC--CCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCccc
Confidence 7899 688999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||+||||||++|+++|.|| +||.+++++++.+|||||+|+|+++|+
T Consensus 148 ~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGgAvGt~~~~~~ 193 (403)
T 1dof_A 148 EPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGGAVGTMASWGE 193 (403)
T ss_dssp EEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCCTTSSCGGGGG
T ss_pred ccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccHHHhhCccccc
Confidence 9999999999999999999 999999999999999999999988853
No 17
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=3.1e-43 Score=323.69 Aligned_cols=185 Identities=21% Similarity=0.170 Sum_probs=166.8
Q ss_pred cccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----HHHHhhhhcCCceecccCcc
Q psy17728 30 CFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL----KDIEYDIEHGKVELKVELED 105 (231)
Q Consensus 30 r~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al----~~i~~~~~~~~~~~~~~~ed 105 (231)
||+.. ++...|++.. ++++.+.+.+||++++.+.|+||++.+++|.++| +.+.... ....||
T Consensus 3 ry~~~--~~~~~~sd~~-----~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~~~~-------~~~~~d 68 (429)
T 1c3c_A 3 RYSLS--PMKDLWTEEA-----KYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKKIE-------EKTNHD 68 (429)
T ss_dssp GGCCT--THHHHTSHHH-----HHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHHHHH-------HHHCCH
T ss_pred CcccH--HHHHHcChHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHH-------hccCCC
Confidence 66653 4788888644 4567788889999999999999999999999995 5554331 125799
Q ss_pred hhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccc
Q psy17728 106 IHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPI 185 (231)
Q Consensus 106 v~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~Pi 185 (231)
| +++++.|.+++|+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||||
T Consensus 69 V-ia~~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~ 147 (429)
T 1c3c_A 69 V-VAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPT 147 (429)
T ss_dssp H-HHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEE
T ss_pred h-HHHHHHHHHHcCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCCCcCcCC
Confidence 9 688999999999879999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 186 SLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 186 T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||||||++|+++|.||++||.+++++++.+|||||+|+|+++|+
T Consensus 148 T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~~~ 191 (429)
T 1c3c_A 148 SFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPP 191 (429)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCSSSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhcCCccCCH
Confidence 99999999999999999999999999999999999999999874
No 18
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=1.1e-43 Score=328.47 Aligned_cols=196 Identities=18% Similarity=0.161 Sum_probs=168.0
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcc
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ed 105 (231)
+++ ||.. +.++...|++.. ++++.+.+.+||++++.+.|+||++.+++|.++|++...+...-........||
T Consensus 5 ~~~-ry~~-~~~~~~i~s~~~-----~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~~~~~~~~~~d 77 (450)
T 1re5_A 5 LFD-AYFT-APAMREIFSDRG-----RLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNS 77 (450)
T ss_dssp TTH-HHHS-CHHHHHHTSHHH-----HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHHHHHSSS
T ss_pred chh-hccC-CHHHHHHcCcHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHhccCcc
Confidence 344 7766 356888998744 446678888999999999999999999999999853111100000001135799
Q ss_pred hhhhHHHHHHHHhC---cc-CCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCc
Q psy17728 106 IHMNIESELIRRIG---NV-GRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQF 181 (231)
Q Consensus 106 v~~~ie~~L~~~~g---~~-~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~ 181 (231)
|| ++++.|++++| +. +++||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+
T Consensus 78 V~-a~~~~l~e~~g~~~~~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~ 156 (450)
T 1re5_A 78 AI-PLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQH 156 (450)
T ss_dssp HH-HHHHHHHHHHHHHCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred HH-HHHHHHHHHhCCCCCcccccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcc
Confidence 98 88888999998 76 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 182 AQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 182 A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||||||||||++|+++|.||++||.+++++++.+|||||+|+|+++++
T Consensus 157 A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~ 204 (450)
T 1re5_A 157 ATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGS 204 (450)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGGG
T ss_pred CccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhcCCcccCc
Confidence 999999999999999999999999999999999999999888888775
No 19
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=9.7e-43 Score=324.51 Aligned_cols=218 Identities=19% Similarity=0.147 Sum_probs=189.5
Q ss_pred CCCcccCCCCCch-hhhhhhcccccchHHHHHHhccccc-chhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy17728 9 NEEGEQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86 (231)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~l~~gr~~~~~~~~~~~f~~~~-~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~ 86 (231)
+-|.|+|+.|+.+ |...+||. +|.+.+++|..+. .+...+++....+..|.+++..+.|+||++.+++|.++|+
T Consensus 35 ~~r~e~d~~g~~~vp~~~~~g~----qt~ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~~ 110 (495)
T 4hgv_A 35 STRTETDTFGPIEVASDRYWGA----QAQRSLGNFKIGWEKQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQ 110 (495)
T ss_dssp CEEEEEETTEEEEEETTCCCCH----HHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCeeeecCCCCccCCCccchHH----HHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5689999999998 56789998 9999999998764 3334444555556666677788999999999999999999
Q ss_pred HHHhhhhcCCceecc----cCcchhhhHHHHHHHHh----C-c--------cCCccccCCChhhHHHHHHHHHHHHHH-H
Q psy17728 87 DIEYDIEHGKVELKV----ELEDIHMNIESELIRRI----G-N--------VGRKLHTGRSRNDQVVLDLRLFTRRNI-K 148 (231)
Q Consensus 87 ~i~~~~~~~~~~~~~----~~edv~~~ie~~L~~~~----g-~--------~~~~lH~G~SrnD~v~Ta~~L~lr~~~-~ 148 (231)
+|..+...+.|+++. .+...+|+++++|.+++ | . ...+||+|+||||+++||++|++++.+ .
T Consensus 111 ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~ 190 (495)
T 4hgv_A 111 EVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIH 190 (495)
T ss_dssp HHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchhhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHH
Confidence 999877778888875 67789999999998885 3 2 234799999999999999999999877 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcce-ecCCCC
Q psy17728 149 ALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA-LGGEFL 227 (231)
Q Consensus 149 ~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa-~~Gt~~ 227 (231)
.|++.|..|+++|.++|++|++++||||||+|+|+|+|||+||++|+++|.|+++||.+++++++.+++||+| ++|+.+
T Consensus 191 ~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~~~ 270 (495)
T 4hgv_A 191 DLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLNA 270 (495)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhcccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999955 567777
Q ss_pred CCC
Q psy17728 228 IKK 230 (231)
Q Consensus 228 ~~~ 230 (231)
|++
T Consensus 271 ~~~ 273 (495)
T 4hgv_A 271 PVG 273 (495)
T ss_dssp CTT
T ss_pred chh
Confidence 764
No 20
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=1.6e-42 Score=320.08 Aligned_cols=186 Identities=21% Similarity=0.194 Sum_probs=167.5
Q ss_pred ccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----HHHHhhhhcCCceecccCc
Q psy17728 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL----KDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 29 gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al----~~i~~~~~~~~~~~~~~~e 104 (231)
.||.. .++...|++.. ++++.+.+.+||++++.+.|+||++.+++|.++| +.+.... ....+
T Consensus 12 ~~~~~--~~~~~i~sd~~-----~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~d~~~i~~~~-------~~~~~ 77 (444)
T 2pfm_A 12 SRYTR--PEMGAIWTEEN-----KFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIYEIE-------KETRH 77 (444)
T ss_dssp CTTCC--HHHHHHTSHHH-----HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHCCCCHHHHHHHH-------HHHCC
T ss_pred Hhcch--HHHHHHcChHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHh-------ccCCC
Confidence 57876 35888888744 4567788889999999999999999999999985 4444331 12578
Q ss_pred chhhhHHHHHHHHh--CccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17728 105 DIHMNIESELIRRI--GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (231)
Q Consensus 105 dv~~~ie~~L~~~~--g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A 182 (231)
|| +++++.|.+++ |+.|+|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|
T Consensus 78 dV-ia~~~~l~e~~g~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A 156 (444)
T 2pfm_A 78 DV-VAFTRAVSETPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHA 156 (444)
T ss_dssp HH-HHHHHHHHTCTTCCGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CH-HHHHHHHHHHcCCCcccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCccc
Confidence 99 68899999999 7788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
|||||||||++|+++|.||++||.+++++++.+|||||+|+|+++|+
T Consensus 157 ~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~~~ 203 (444)
T 2pfm_A 157 EPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANIDP 203 (444)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCTTSCH
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhhccCCcCCH
Confidence 99999999999999999999999999999999999999999999874
No 21
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=5.5e-43 Score=322.40 Aligned_cols=189 Identities=20% Similarity=0.208 Sum_probs=161.1
Q ss_pred ccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhcCCceecccCcchhh
Q psy17728 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHM 108 (231)
Q Consensus 29 gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~GiI~~~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~ 108 (231)
.||+.+ ++...||+.+.+.. .+++..|+++++.+ |+||++.+++|.++++ +.. ..-.......+|||+
T Consensus 3 ~ry~~~--~m~~~fs~~~~~~~-----~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~-~d~--~~i~~~e~~~~hdV~- 70 (438)
T 4eei_A 3 KRYDVA--EISKIWADENKYAK-----MLEVELAILEALED-RMVPKGTAAEIRARAQ-IRP--ERVDEIEKVTKHDII- 70 (438)
T ss_dssp GGGCCH--HHHHHHSHHHHHHH-----HHHHHHHHHHHGGG-TTSCTTHHHHHHHHCC-CCH--HHHHHHHHHHSCHHH-
T ss_pred cccCcH--HHHHHcChHHHHHH-----HHHHHHHHHHHHhc-CCCCHHHHHHHHhhCC-CCH--HHHHHHHHhcCCCHH-
Confidence 467554 58889998776654 34555567788999 9999999999988752 211 110111123689996
Q ss_pred hHHHHHHHHhCcc-CCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccH
Q psy17728 109 NIESELIRRIGNV-GRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISL 187 (231)
Q Consensus 109 ~ie~~L~~~~g~~-~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~ 187 (231)
++|++|.+++|+. ++|||+|+|||||++|+++|++|+++..|.+.|..|+++|.++|++|++++||||||+|+||||||
T Consensus 71 a~~~~l~e~~g~~~~~~iH~G~SsnDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~ 150 (438)
T 4eei_A 71 AFCTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSF 150 (438)
T ss_dssp HHHHHHHTTSCTTTTTTTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEET
T ss_pred HHHHHHHHHcCHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccCccCCchhH
Confidence 8999999999976 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCCCCC
Q psy17728 188 GHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLIK 229 (231)
Q Consensus 188 G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~~~~ 229 (231)
||||++|+++|.||++||.+++++++.+||||++|+|.++++
T Consensus 151 G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~~~~ 192 (438)
T 4eei_A 151 GQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTT 192 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTSCCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccHhhCcccccH
Confidence 999999999999999999999999999999988777666654
No 22
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=2.6e-43 Score=326.97 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=163.2
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhhcCCc----e-
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NIIDEQDKELIVKTLKDIEYDIEHGKV----E- 98 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~-GiI~~~~a~~I~~al~~i~~~~~~~~~----~- 98 (231)
.+|+|||++.++++...|++ ..++++++.+++||+++|++. |+||++.+++|.. +.++..++..+.+ .
T Consensus 9 s~~~gRy~~~~~~~~~~~sd-----~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~-l~~~~~~~~~~d~~~i~~~ 82 (465)
T 2qga_B 9 SPIDGRYKKACGELSAFFSE-----HALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEV-LNQIATNITDSDIARVKAI 82 (465)
T ss_dssp STTTTTTHHHHGGGGGTSSH-----HHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHH-HHHHHHCCCHHHHHHHHHH
T ss_pred CcccccccCCcHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHHH
Confidence 47999999887678888875 556678999999999999999 9999988888864 4433333211111 1
Q ss_pred ecccCcchhhhHHHHHHHHhC--------ccCCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q psy17728 99 LKVELEDIHMNIESELIRRIG--------NVGRKLHTGRSRNDQVVLDLRLFTRRNIK-ALIKLLLDTVKQLTRLAQLHK 169 (231)
Q Consensus 99 ~~~~~edv~~~ie~~L~~~~g--------~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~ 169 (231)
....+||| +++|++|++++| +.++|||+|+|||||++|+++|++|+++. .|.+.|..|+++|.++|++|+
T Consensus 83 e~~~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~ 161 (465)
T 2qga_B 83 EEETNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYS 161 (465)
T ss_dssp HHHHSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccCCCh-HHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 12368999 999999999998 56899999999999999999999999999 799999999999999999999
Q ss_pred CccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCC
Q psy17728 170 HHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGE 225 (231)
Q Consensus 170 ~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt 225 (231)
+++||||||+|+||||||||||++|+++|.||++||.+++ .+++||||+ ||
T Consensus 162 ~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT 212 (465)
T 2qga_B 162 HVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAV-GN 212 (465)
T ss_dssp TCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTT-SS
T ss_pred CcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH----Hhccccchh-cC
Confidence 9999999999999999999999999999999999998876 677788887 88
No 23
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.7e-42 Score=319.72 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=163.6
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhC-CC--C---CHHHHHHHHHHHHHHHh-hhhcCCc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI--I---DEQDKELIVKTLKDIEY-DIEHGKV 97 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~-Gi--I---~~~~a~~I~~al~~i~~-~~~~~~~ 97 (231)
.+|+|||++.++++...|++ ..++++++.+++||+++|++. |+ | +++++++|.++++++.. ++..-.-
T Consensus 13 s~~~gRy~~~~~~~~~~fsd-----~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d~~~~~~ 87 (459)
T 3bhg_A 13 SPIDGRYVNKTRALSPYFSE-----FALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKE 87 (459)
T ss_dssp STTTTTTHHHHGGGTTTSSH-----HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccccCChHHHHHHcCH-----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccccHHHHHH
Confidence 47999999887789999995 556688999999999999999 88 4 48999999999866522 1110000
Q ss_pred eecccCcchhhhHHHHHHHHhCc------cCCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q psy17728 98 ELKVELEDIHMNIESELIRRIGN------VGRKLHTGRSRNDQVVLDLRLFTRRNIK-ALIKLLLDTVKQLTRLAQLHKH 170 (231)
Q Consensus 98 ~~~~~~edv~~~ie~~L~~~~g~------~~~~lH~G~SrnD~v~Ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~ 170 (231)
.....+||| +++|++|++++|+ .++|||+|+|||||++|+++|++|+++. .|.+.|..|+++|.++|++|++
T Consensus 88 ~e~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~ 166 (459)
T 3bhg_A 88 FEKQTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHAD 166 (459)
T ss_dssp HTTTCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCh-HHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 013468999 9999999999973 5799999999999999999999999999 6999999999999999999999
Q ss_pred ccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCC
Q psy17728 171 HIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGE 225 (231)
Q Consensus 171 t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt 225 (231)
++||||||+|+||||||||||++|+++|.||++||.+++ .+++||||+ ||
T Consensus 167 ~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAv-GT 216 (459)
T 3bhg_A 167 VAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAV-GN 216 (459)
T ss_dssp CEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSS-SS
T ss_pred CEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccc-cc
Confidence 999999999999999999999999999999999999876 466666776 77
No 24
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-41 Score=313.51 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=165.8
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHhhhhcCCceeccc
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI--IDEQDKELIVKTLKDIEYDIEHGKVELKVE 102 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~Gi--I~~~~a~~I~~al~~i~~~~~~~~~~~~~~ 102 (231)
.+|.+||++. .++...|++...+.. .+++.+|+++++.+.|+ ||+++++.|.++++++..+...+ . ....
T Consensus 9 spl~~ry~~~-~~m~~~fs~~~~~~~-----~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~-~-e~~~ 80 (478)
T 1yis_A 9 SVLSTRYCKN-SPLVSILSETNKATL-----WRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRS-E-ERKL 80 (478)
T ss_dssp CHHHHTTTTT-CTHHHHTSHHHHHHH-----HHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHH-H-HHHS
T ss_pred CCcccccCCh-HHHHHHcCchHHHHH-----HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhh-H-HHhc
Confidence 3677899875 338899999876544 45566667799999999 99999999999886665442221 1 1457
Q ss_pred CcchhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcc
Q psy17728 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182 (231)
Q Consensus 103 ~edv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A 182 (231)
+||||.+++ .|.+++|+.++|||+|+||||+++|+..|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|
T Consensus 81 ~~DV~a~v~-~l~e~~g~~~~~iH~G~TS~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A 159 (478)
T 1yis_A 81 KHDVMAHNH-AFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTA 159 (478)
T ss_dssp SCHHHHHHH-HHHHHCTTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEE
T ss_pred CCcHHHHHH-HHHHhhhhchhheeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccc
Confidence 899998877 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCCC
Q psy17728 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEF 226 (231)
Q Consensus 183 ~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt~ 226 (231)
|||||||||++|+++|.||++||.++++++..+++||++ ||.
T Consensus 160 ~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg~~--GT~ 201 (478)
T 1yis_A 160 SLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGAT--GTQ 201 (478)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCTTT--SSC
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh--ccc
Confidence 999999999999999999999999999999888887775 555
No 25
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=1.3e-40 Score=308.65 Aligned_cols=191 Identities=14% Similarity=0.151 Sum_probs=165.8
Q ss_pred hhhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhC-CC--CC---HHHHHHHHHHHHHHHhh-hhc-CC
Q psy17728 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI--ID---EQDKELIVKTLKDIEYD-IEH-GK 96 (231)
Q Consensus 25 ~l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~-Gi--I~---~~~a~~I~~al~~i~~~-~~~-~~ 96 (231)
.+|+|||++.++++...|++ ..++++++.+.+||++++++. |+ || ++++++|.++|+++..+ +.. .+
T Consensus 10 s~~~gRy~~~~~~~~~~fsd-----~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g~~~~~~~ 84 (462)
T 2ptr_A 10 SPVDGRYGDKVSALRGIFSE-----YGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKT 84 (462)
T ss_dssp STTTTTTGGGSGGGGGTTSH-----HHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccccCchHHHHHHCCc-----HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccCCHHHHHh
Confidence 37999999987789999984 567788999999999999999 66 33 89999999999766321 100 00
Q ss_pred ceecccCcchhhhHHHHHHHHhCc------cCCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q psy17728 97 VELKVELEDIHMNIESELIRRIGN------VGRKLHTGRSRNDQVVLDLRLFTRRNIKA-LIKLLLDTVKQLTRLAQLHK 169 (231)
Q Consensus 97 ~~~~~~~edv~~~ie~~L~~~~g~------~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~ 169 (231)
.. ...++|| +++|..|.+++|+ .+++||+|+|||||++|+++|++|+++.. |.+.|..|+++|.++|++|+
T Consensus 85 ~~-~~~~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~~~~ 162 (462)
T 2ptr_A 85 IE-RTTNHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYR 162 (462)
T ss_dssp HH-HHHSCHH-HHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred hc-cccCCCH-HHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 11 3458999 8999999999974 57899999999999999999999999994 99999999999999999999
Q ss_pred CccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecCC
Q psy17728 170 HHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGE 225 (231)
Q Consensus 170 ~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~Gt 225 (231)
+++||||||+|+||||||||||++|+++|.|+++||.+++ ..+++||++|+|.
T Consensus 163 ~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~GAvGT~~ 215 (462)
T 2ptr_A 163 DIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE---ILGKINGAVGNYN 215 (462)
T ss_dssp TCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCCTTSSCH
T ss_pred CCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---HHhccCchhcchh
Confidence 9999999999999999999999999999999999999987 4888898887765
No 26
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=2.7e-40 Score=309.13 Aligned_cols=189 Identities=14% Similarity=0.123 Sum_probs=163.4
Q ss_pred hhcccccchHHHHHHhcccccchhhhccHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHhhhhcCCceecccCc
Q psy17728 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (231)
Q Consensus 26 l~~gr~~~~~~~~~~~f~~~~~~d~~l~~~~i~~~lA~~~~l~~~Gi-I~~~~a~~I~~al~~i~~~~~~~~~~~~~~~e 104 (231)
++.+||+.. ++...||+...+.. .+++.+|+++++.+.|+ ||++++++|.++++++..+...+ + ....+|
T Consensus 38 pl~~ry~~~--~m~~~fS~~~~~~~-----~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~-~-e~~~~h 108 (503)
T 2j91_A 38 PLASRYASP--EMCFVFSDRYKFRT-----WRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAE-E-EKRLRH 108 (503)
T ss_dssp HHHHTTSCH--HHHHHTSHHHHHHH-----HHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHH-H-HHHHSC
T ss_pred CcccccCCH--HHHHHhChhHHHHH-----HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhh-h-hhhcCC
Confidence 567899875 69999999876644 34555566688999999 99999999998876654432211 1 135789
Q ss_pred chhhhHHHHHHHHhCccCCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcccc
Q psy17728 105 DIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQP 184 (231)
Q Consensus 105 dv~~~ie~~L~~~~g~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P 184 (231)
|||..++ .|.+++|+.++|||+|+||||+++|+..|++|+++..|.+.|..|+++|.++|++|++++||||||+|+|||
T Consensus 109 DV~a~v~-~l~e~~g~~~~~iH~G~TS~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P 187 (503)
T 2j91_A 109 DVMAHVH-TFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQL 187 (503)
T ss_dssp HHHHHHH-HHHHHCTTTGGGTTTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEE
T ss_pred cHHHHHH-HHHHHhccccccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccee
Confidence 9997776 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceecC
Q psy17728 185 ISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGG 224 (231)
Q Consensus 185 iT~G~~l~~~~~~l~r~~~rL~~~~~~~~~~pLGgaa~~G 224 (231)
|||||||++|+++|.||++||.+++++++.+.+||++|+|
T Consensus 188 ~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG~~GT~ 227 (503)
T 2j91_A 188 TTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQ 227 (503)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCCTTSSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Confidence 9999999999999999999999999999888888775444
No 27
>1t0c_A Insulin; type I beta-turn, BEND, type III' beta-turn, hormone/growth factor complex; NMR {Homo sapiens}
Probab=34.24 E-value=13 Score=20.02 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.4
Q ss_pred cccCCCCcceecCCCCC
Q psy17728 212 VNVNPLGSAALGGEFLI 228 (231)
Q Consensus 212 ~~~~pLGgaa~~Gt~~~ 228 (231)
+-.+.||||.++|+--|
T Consensus 7 vgqvelgggpgagslqp 23 (31)
T 1t0c_A 7 VGQVELGGGPGAGSLQP 23 (31)
T ss_dssp TTTTSCCCSTTSSSCSG
T ss_pred eeeEEecCCCCcccccc
Confidence 45778999999998544
No 28
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=32.61 E-value=9.8 Score=20.48 Aligned_cols=15 Identities=33% Similarity=0.301 Sum_probs=11.9
Q ss_pred ccccCCccccccHHH
Q psy17728 175 GFTHFQFAQPISLGH 189 (231)
Q Consensus 175 GrTH~Q~A~PiT~G~ 189 (231)
.|+|-|+|.|+.-|.
T Consensus 1 Dr~Hp~~agp~p~gq 15 (26)
T 1fgl_B 1 DRXHPVHAGPIAPGQ 15 (26)
T ss_pred CCcCcccCCCCCCCC
Confidence 378999999987663
No 29
>2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp}
Probab=31.67 E-value=75 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.9
Q ss_pred HhCCCCCHHHHHHHHHHHHHH
Q psy17728 68 GERNIIDEQDKELIVKTLKDI 88 (231)
Q Consensus 68 ~~~GiI~~~~a~~I~~al~~i 88 (231)
.+.|+|+.++++.|...|+.-
T Consensus 60 vrlGli~~~~Gk~ll~~LE~~ 80 (91)
T 2odm_A 60 VKLGLVDREDGKQIMLRLEKE 80 (91)
T ss_dssp HHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHCCccHHHHHHHHHHHHHH
Confidence 789999999999998777643
No 30
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=29.97 E-value=1.7e+02 Score=21.65 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=35.0
Q ss_pred HHHHHHhCc-cCCccccCCChhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcCcc
Q psy17728 112 SELIRRIGN-VGRKLHTGRSRNDQVVLDLRLFTRRNIKALI----------KLLLDTVKQLTRLAQLHKHHI 172 (231)
Q Consensus 112 ~~L~~~~g~-~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~----------~~l~~l~~~L~~~A~~~~~t~ 172 (231)
+.|.+.+|- .+..-|+-.|..|++...+.-.+.+....+. ..+..+...+.+...++....
T Consensus 55 ~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 126 (218)
T 3dcf_A 55 DDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILRNLDAN 126 (218)
T ss_dssp HHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchHHH
Confidence 466777773 3333344458888888776665555444433 344555666666655554443
No 31
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=27.94 E-value=1.8e+02 Score=21.30 Aligned_cols=87 Identities=9% Similarity=0.012 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCceecccCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHH---
Q psy17728 76 QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALI--- 151 (231)
Q Consensus 76 ~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~--- 151 (231)
+..++|..+..++..+..-..+ .+ +.|.+.+| ..+..-|+-.|.+|++...+.-...+....+.
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~-----------t~-~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGAT-----------TT-REIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAAD 83 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTC-----------CH-HHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCcC-----------CH-HHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677776666544211111 12 57789998 34444445569999999887776665554443
Q ss_pred -------HHHHHHHHHHHHHHHHhcCcccc
Q psy17728 152 -------KLLLDTVKQLTRLAQLHKHHIMP 174 (231)
Q Consensus 152 -------~~l~~l~~~L~~~A~~~~~t~m~ 174 (231)
+.+..+...+.+...++......
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (211)
T 3him_A 84 FPDIAAPDRLMSTVTAYVTWHADNRASARV 113 (211)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 34566666666666666554433
No 32
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=26.32 E-value=47 Score=21.40 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=26.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17728 182 AQPISLGHYLLAYASMFRRDIERLLDCRR 210 (231)
Q Consensus 182 A~PiT~G~~l~~~~~~l~r~~~rL~~~~~ 210 (231)
.|-+|.|...+.|.++|.....+|++++.
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~ 44 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFS 44 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHh
Confidence 57789999999999999999999999875
No 33
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.44 E-value=2.1e+02 Score=20.98 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=37.2
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcCcc
Q psy17728 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALI----------KLLLDTVKQLTRLAQLHKHHI 172 (231)
Q Consensus 112 ~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~----------~~l~~l~~~L~~~A~~~~~t~ 172 (231)
+.|.+.+| ..+..-|+-.|..|++...+.-...+....+. +.+..+...+.+...++....
T Consensus 49 ~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 120 (212)
T 3nxc_A 49 AKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLT 120 (212)
T ss_dssp HHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhchhHH
Confidence 57788888 34444445559999998877655554444332 345556666666666555433
No 34
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=23.64 E-value=12 Score=30.42 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17728 134 QVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVN 213 (231)
Q Consensus 134 ~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~~~~ 213 (231)
..++.++-.+++.+..+..++...+++|.+...=-...+-=.+..+++.|-+...+|+-+++.+-..-++.|.++..++.
T Consensus 9 ~~~~~~k~~~~~~l~~i~~~~~~~~~~~~~~~~c~l~~~~~~~~~~~~~~~~~~~y~~~~~~aPgt~~i~~l~~a~~~ls 88 (205)
T 2fb5_A 9 GLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLS 88 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhccCCceehHhhhhHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 34477888889999999999999888887633211122223455666777777778888888877777777777777777
Q ss_pred cCCCCcc
Q psy17728 214 VNPLGSA 220 (231)
Q Consensus 214 ~~pLGga 220 (231)
..+.|+=
T Consensus 89 ~~k~GAL 95 (205)
T 2fb5_A 89 ARKHGAL 95 (205)
T ss_dssp HHTCCEE
T ss_pred ccCeeEE
Confidence 7666653
No 35
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=23.23 E-value=2.4e+02 Score=21.44 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.8
Q ss_pred HHhCCC
Q psy17728 67 LGERNI 72 (231)
Q Consensus 67 l~~~Gi 72 (231)
+.+.|+
T Consensus 26 ~~~~G~ 31 (231)
T 2qib_A 26 FSRRSP 31 (231)
T ss_dssp HHHSCG
T ss_pred HHHcCc
Confidence 345554
No 36
>2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein, PSI, protein STRU initiative, midwest center for structural genomics; 2.20A {Enterococcus faecalis} SCOP: a.23.6.1
Probab=22.98 E-value=99 Score=22.06 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=17.7
Q ss_pred HhCCCCCHHHHHHHHHHHHHH
Q psy17728 68 GERNIIDEQDKELIVKTLKDI 88 (231)
Q Consensus 68 ~~~GiI~~~~a~~I~~al~~i 88 (231)
.+.|+|+.++++.|...|+.-
T Consensus 62 VrlGli~~~~Gk~ll~~LE~~ 82 (104)
T 2gbo_A 62 TRLGILTNDEGHRLLSDLERE 82 (104)
T ss_dssp HHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHH
Confidence 688999999999998777643
No 37
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=21.88 E-value=2.4e+02 Score=20.64 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcC
Q psy17728 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKAL---------IKLLLDTVKQLTRLAQLHKH 170 (231)
Q Consensus 112 ~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l---------~~~l~~l~~~L~~~A~~~~~ 170 (231)
+.|.+.+| ..+..-|+-.|..|++...+.-+..+....+ .+.|..+...+.+...++..
T Consensus 39 ~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (199)
T 2rek_A 39 EEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARSLAAEHPPATALTRWLTSLAVFGAVTRG 107 (199)
T ss_dssp HHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcH
Confidence 46678887 3344445567888888877665555443322 34455555555665555543
No 38
>2yqy_A TT2238, hypothetical protein TTHA0303; four-helix-bundle, NPPSFA, national project on protein struc functional analyses; 2.00A {Thermus thermophilus}
Probab=21.45 E-value=1.4e+02 Score=21.68 Aligned_cols=62 Identities=15% Similarity=-0.001 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17728 148 KALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210 (231)
Q Consensus 148 ~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~PiT~G~~l~~~~~~l~r~~~rL~~~~~ 210 (231)
..++..+....+.+........+.-.....|.. -.|+|.+.++..++.=..+|+..+.++++
T Consensus 107 ~~ll~~~~~~~~~~~~~l~~l~~~~~~~~~hp~-~g~~t~~~~l~~~~~H~~hH~~Qi~~i~~ 168 (169)
T 2yqy_A 107 EEVLALLDRARAFLLEEVAKADPQNPATFPHPF-FGELNPLGWLRAAAYHEAHHLKALQASLP 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCCCCEEETT-TEEECHHHHHCCH-HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCEecCCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555554443222333431 25889999999998888999888877643
No 39
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.20 E-value=2.7e+02 Score=21.08 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCceecccCcchhhhHHHHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHHHHH-
Q psy17728 76 QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKL- 153 (231)
Q Consensus 76 ~~a~~I~~al~~i~~~~~~~~~~~~~~~edv~~~ie~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~- 153 (231)
+..+.|..+..++..+..-..+ .+ +.|.+.+| ..+..-|+-.|.+|++...+.-...+....+...
T Consensus 16 ~~r~~il~aA~~l~~~~G~~~~-----------s~-~~IA~~agvs~~t~Y~~F~~K~~L~~a~~~~~~~~~~~~~~~~~ 83 (216)
T 2oi8_A 16 QVRAEIKDHAWEQIATAGASAL-----------SL-NAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQADSLRAAA 83 (216)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC-----------CH-HHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccC-----------CH-HHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677776666544211111 12 57788888 3344334456999999887766665555544433
Q ss_pred -----HHHHHHHHHHHHHHhcCcc
Q psy17728 154 -----LLDTVKQLTRLAQLHKHHI 172 (231)
Q Consensus 154 -----l~~l~~~L~~~A~~~~~t~ 172 (231)
+..+...+.+.+.+|.+..
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~~~~~ 107 (216)
T 2oi8_A 84 ASGADLAGLAHALRAWALDDPQRY 107 (216)
T ss_dssp HTTCCHHHHHHHHHHHHHHCHHHH
T ss_pred ccchhHHHHHHHHHHHHHhChHHh
Confidence 5566777777777665443
No 40
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=20.83 E-value=2.4e+02 Score=20.23 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=37.8
Q ss_pred HHHHHHhC-ccCCccccCCChhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcCc
Q psy17728 112 SELIRRIG-NVGRKLHTGRSRNDQVVLDLRLFTRRNIKAL----------IKLLLDTVKQLTRLAQLHKHH 171 (231)
Q Consensus 112 ~~L~~~~g-~~~~~lH~G~SrnD~v~Ta~~L~lr~~~~~l----------~~~l~~l~~~L~~~A~~~~~t 171 (231)
+.|.+.+| ..+..-|+-.|..|++...+.-...+....+ .+.+..+...+.+...++...
T Consensus 32 ~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 102 (195)
T 3pas_A 32 GKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLERPEL 102 (195)
T ss_dssp HHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 57788888 3444556677899999888776666554433 334555555566555555443
No 41
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=20.74 E-value=2.5e+02 Score=20.98 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=30.7
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17728 124 KLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTR 163 (231)
Q Consensus 124 ~lH~G~SrnD~v~Ta~~L~lr~~~~~l~~~l~~l~~~L~~ 163 (231)
..|-++|+-|.+|-. .+.+|.++..+...+.+-.....+
T Consensus 84 ~aHs~~sslD~vD~~-Il~Ak~aL~evt~~l~Er~~RW~q 122 (136)
T 3ter_A 84 LATGAASTSDQVDSK-IFALKSRMEKIHTLTRETQERWLQ 122 (136)
T ss_dssp CCCSSCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999986 489999998888777776655544
Done!