RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17728
(231 letters)
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 304 bits (781), Expect = e-103
Identities = 87/203 (42%), Positives = 122/203 (60%), Gaps = 2/203 (0%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+ W G F + + +FN S++ D L+RED+ + H ML ++ ++ E I+K
Sbjct: 3 HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILK 62
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFT 143
L IE +IE G + ELED+HMN+E+ L +G G KLHT RSRNDQV DLRL+
Sbjct: 63 GLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYL 122
Query: 144 RRNIKALIKLLLDTVKQLTRLAQLHKH--HIMPGFTHFQFAQPISLGHYLLAYASMFRRD 201
R I L+ LLL + L R A+ H +++PG+TH Q AQP+ L H+ LAY M +RD
Sbjct: 123 RGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRD 182
Query: 202 IERLLDCRRRVNVNPLGSAALGG 224
RL D + R+N +PLG+AAL G
Sbjct: 183 AGRLEDAKERLNESPLGAAALAG 205
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 301 bits (773), Expect = e-101
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 62
Query: 86 KDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
+ D+ + L+ + EDIH +E +LI ++G +G+KLHTGRSRNDQV DL+L+ +
Sbjct: 63 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCK 122
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
+ L+ L AQ ++ +MPG+TH Q AQP++ H+ LAY M RD R
Sbjct: 123 DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 182
Query: 205 LLDCRRRVNVNPLGSAALGG 224
L D +R++V+PLG AL G
Sbjct: 183 LQDALKRLDVSPLGCGALAG 202
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 301 bits (773), Expect = e-101
Identities = 81/201 (40%), Positives = 116/201 (57%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 8 DKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILS 67
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFT 143
L+ I + G +K EDIH E L IG++ KLHTGRSRNDQVV DL+LF
Sbjct: 68 GLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFM 127
Query: 144 RRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIE 203
+ ++ + LL +K L A + I+PG+TH Q AQPI +LL++A RD E
Sbjct: 128 KNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSE 187
Query: 204 RLLDCRRRVNVNPLGSAALGG 224
RL + ++R+NV PLGS AL G
Sbjct: 188 RLGEVKKRINVLPLGSGALAG 208
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 69.6 bits (171), Expect = 4e-14
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 10/160 (6%)
Query: 67 LGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIE--SELIRRI-GNVGR 123
E +I + + E IV L + D+ + +D + E ++ + G
Sbjct: 44 EAEASIFADDEAEAIVSGLSEFAADMS--ALR-HGVAKDGVVVPELIRQMRAAVAGQAAD 100
Query: 124 KLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQF 181
K+H G + D V+D L L + + + L + L LA H + G+T Q
Sbjct: 101 KVHFGATSQD--VIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQA 158
Query: 182 AQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
A I++ + + R + RL + G AA
Sbjct: 159 AIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAA 198
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 69.6 bits (171), Expect = 4e-14
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 11/159 (6%)
Query: 68 GERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIES---ELIRRIGNVGRK 124
II E I + ++E L+ + E + I +L G G+
Sbjct: 42 ARLGIIPEDAAAGITAAARTFAPEME----RLRDDTEIVGYPILPLVEQLSAHAGEAGKY 97
Query: 125 LHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182
LH G + D ++D L R + + + + K L LA+ H+ M G TH Q A
Sbjct: 98 LHWGATTQD--IMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHA 155
Query: 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
P++ G+ + S F R RL + RV V A+
Sbjct: 156 LPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGAS 194
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 67.3 bits (165), Expect = 3e-13
Identities = 32/164 (19%), Positives = 53/164 (32%), Gaps = 15/164 (9%)
Query: 67 LGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHM-------NIESELIRRIG 119
++ I + YD L + + + +
Sbjct: 39 EASAGLVPHSAVAAIEAACQAERYDTG----ALANAIATAGNSAIPLVKALGKVIATGVP 94
Query: 120 NVGRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFT 177
R +H G + D +D L L R + + L L++ A H + G T
Sbjct: 95 EAERYVHLGATSQD--AMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRT 152
Query: 178 HFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
Q A P++LG L R +RL + R R+ V G A+
Sbjct: 153 WLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGAS 196
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 67.0 bits (164), Expect = 3e-13
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 118 IGNVGRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPG 175
+G + +H G + D V+D L ++ + ++K L + V L A+ HK+ IM G
Sbjct: 92 LGEERKWVHYGLTSTD--VVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMG 149
Query: 176 FTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214
TH A+P + G L + +R++ER V V
Sbjct: 150 RTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRV 188
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 66.5 bits (163), Expect = 4e-13
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 100 KVELEDIHMNIESE-----------LIRRIGNVGRKLHTGRSRNDQVVLD--LRLFTRRN 146
K+++E IE + + IG R H G + +D VLD L
Sbjct: 52 KIDVELFK-KIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGLTSSD--VLDTANSLALVEA 108
Query: 147 IKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLL 206
K L++ L + L +A +KH G TH A+P S G +L + S +R+++RL
Sbjct: 109 GKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLE 168
Query: 207 DCRRRVNV 214
V+
Sbjct: 169 RAIEEVSY 176
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 66.6 bits (163), Expect = 5e-13
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 119 GNVGRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGF 176
+ R +H G + D +LD L R + + + + AQ ++H +M G
Sbjct: 98 EDAARYVHWGATSQD--ILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGR 155
Query: 177 THFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
T Q A PI+LGH L +AS F+RD++R+ + RV V LG A
Sbjct: 156 TWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAV 200
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 65.0 bits (159), Expect = 1e-12
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 122 GRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHF 179
R +H G + ND ++D L RR + A+ + QL +A+ +K M G TH
Sbjct: 87 CRYVHYGATSND--IIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHG 144
Query: 180 QFAQPISLGHYLLAYASMFRRDIERLLDCRRRV 212
Q+A+PI+LG Y +L +
Sbjct: 145 QWAEPITLGFKFANYYYELYIACRQLALAEEFI 177
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 62.3 bits (152), Expect = 1e-11
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 17/129 (13%)
Query: 100 KVELEDIHMNIESE-------LIRRI-----GNVGRKLHTGRSRNDQVVLD--LRLFTRR 145
++ E + IE I G+ H G + +D ++D L L R
Sbjct: 52 QIRPERVD-EIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTSSD--IIDSALSLQIRD 108
Query: 146 NIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERL 205
++ +IK L L A+ K I G +H FA+P+S G L F+R ++ L
Sbjct: 109 SMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDL 168
Query: 206 LDCRRRVNV 214
D ++
Sbjct: 169 KDFQKDGLT 177
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 60.8 bits (148), Expect = 5e-11
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 118 IGNVGRKLHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPG 175
+H G + V D + R + L+ L + +L A+ G
Sbjct: 121 CPKAAGIIHLGATSCY--VGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLG 178
Query: 176 FTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214
FTHFQ AQ ++G + D++ L R +
Sbjct: 179 FTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRF 217
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 60.4 bits (147), Expect = 6e-11
Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 12/152 (7%)
Query: 67 LGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH--MNIESELIRRIGNVGRK 124
LG + + + E + ++ E + H M +
Sbjct: 48 LGLKQVTQDAIDE-MKSNRDVFDWP-----FIRSEERKLKHDVMAHNHAFGKLCPTAAGI 101
Query: 125 LHTGRSRNDQVVLD--LRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFA 182
+H G + V D + R +I ++K + +L + +K + G TH+Q A
Sbjct: 102 IHLGATSCF--VQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTA 159
Query: 183 QPISLGHYLLAYASMFRRDIERLLDCRRRVNV 214
+++G + +A + L + R ++
Sbjct: 160 SLVTVGKRGVLWAQELLMAFQSLSEFRDKMRF 191
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 44.0 bits (105), Expect = 2e-05
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 149 ALIKLLLDTVKQLTRL-------AQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRD 201
AL+ L RL + I G T Q A PI+LG A+A+ R D
Sbjct: 172 ALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLRED 231
Query: 202 IERLLDCRRRVNVNPLGSAALG 223
RL + LG A+G
Sbjct: 232 TARLEEVAALFREVNLGGTAIG 253
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 43.7 bits (104), Expect = 2e-05
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 149 ALIKLLLDTVKQLTRL-------AQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRD 201
A+ L+ V + +L A + + G T Q A P++LG A++ + + +
Sbjct: 155 AVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEE 214
Query: 202 IERLLDCRRRVNVNPLGSAALG 223
++ + + LG+ A+G
Sbjct: 215 VKNIQRTAELLLEVNLGATAIG 236
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 43.0 bits (102), Expect = 4e-05
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210
++ L D L ++ I G TH Q A P++LG Y + + R+
Sbjct: 191 LQKLHDA---LDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMP 247
Query: 211 RVNVNPLGSAALG 223
R+ G A+G
Sbjct: 248 RIYELAAGGTAVG 260
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 42.5 bits (101), Expect = 5e-05
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 149 ALIKLLLDTVKQLTRL-------AQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRD 201
A++ LL ++ + A I G TH Q A PI LG AYA + RD
Sbjct: 152 AVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARD 211
Query: 202 IERLLDCRRRVNVNPLGSAALG 223
IER+ + R + +G+ A+G
Sbjct: 212 IERIANTRNNLYDINMGATAVG 233
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 41.8 bits (99), Expect = 9e-05
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210
+K L T L ++ + G T+ Q A P++LG + + +M +++ +
Sbjct: 164 LKTLTQT---LNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLP 220
Query: 211 RVNVNPLGSAALG 223
V LG A+G
Sbjct: 221 HVAELALGGTAVG 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 9e-05
Identities = 40/247 (16%), Positives = 75/247 (30%), Gaps = 81/247 (32%)
Query: 7 EDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTM 66
+ + TPD+ K L + C + L RE + + +++
Sbjct: 292 DHHSMTL--TPDEVKSLLLKYLDC----------------RPQD-LPREVLTTNPRRLSI 332
Query: 67 LGER-----NIID-----EQDK-----ELIVKTLKDIE----YD---I--EHGKVELKVE 102
+ E D DK E + L+ E +D + + +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL- 391
Query: 103 LEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIK---LLLDTVK 159
L I ++ + + N KLH L ++ ++ I + L+
Sbjct: 392 LSLIWFDVIKSDVMVVVN---KLH-----------KYSLVEKQPKESTISIPSIYLELKV 437
Query: 160 QLTRLAQLHK-----HHIMPGFTHFQFAQPIS-------LGHYLLA-----YASMFRRDI 202
+L LH+ ++I F P +GH+L ++FR
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-- 495
Query: 203 ERLLDCR 209
LD R
Sbjct: 496 -VFLDFR 501
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 41.8 bits (99), Expect = 1e-04
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210
+ LL L ++ I G TH Q A P++L Y + +ER+ D +
Sbjct: 185 LNNLLTY---LQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALK 241
Query: 211 RVNVNPLGSAALG 223
+V + G A+G
Sbjct: 242 KVYLLAQGGTAVG 254
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 41.8 bits (99), Expect = 1e-04
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210
+ L + L ++ H + G TH Q A P++LG Y I+R+ +
Sbjct: 189 LTNLKNA---LEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLK 245
Query: 211 RVNVNPLGSAALG 223
++ G A+G
Sbjct: 246 TLSFLAQGGTAVG 258
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 41.1 bits (97), Expect = 2e-04
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 148 KALIKLLLDTVKQL----TRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIE 203
+A + L+ ++QL A + G TH A P++LG YA IE
Sbjct: 175 EAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIE 234
Query: 204 RLLDCRRRVNVNPLGSAALG 223
R+ C R+ +G A+G
Sbjct: 235 RVRACLPRLGELAIGGTAVG 254
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 40.6 bits (96), Expect = 2e-04
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 151 IKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRR 210
++ L+ T T AQ + G TH A PI+LG + ++A+ + + + + +
Sbjct: 164 VEGLIRT---FTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEK 220
Query: 211 RVNVNPLGSAALG 223
+ +G A+G
Sbjct: 221 GLYNLAIGGTAVG 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.018
Identities = 33/200 (16%), Positives = 54/200 (27%), Gaps = 85/200 (42%)
Query: 52 LYRE-DIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNI 110
LY+ A +++ + D H K + DI +N
Sbjct: 1635 LYKTSKAA-----------QDVWNRADN---------------HFKDTYGFSILDIVINN 1668
Query: 111 ESEL-IRRIGNVGRKLH------TGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTR 163
L I G G+++ + D + ++F N + K L
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH-STSYTFRSEKGL-- 1725
Query: 164 LAQLHKHHIMPGFTHFQFAQP-I--------------------------SLGHY--LLAY 194
L+ T QF QP + SLG Y L +
Sbjct: 1726 LSA----------T--QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 195 ASMFRRDIE---RLLDCRRR 211
A + IE ++ R
Sbjct: 1774 ADVM--SIESLVEVV--FYR 1789
Score = 35.0 bits (80), Expect = 0.019
Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 60/196 (30%)
Query: 21 KELKQL-WTGC-FQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDK 78
K + L + G ++ SI D + E + ML N+
Sbjct: 298 KAITVLFFIGVRCYEAYPN--TSLPPSILEDSLENNEGVPSP-----MLSISNL------ 344
Query: 79 ELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVL- 137
T + ++ + L + + I L G +V+
Sbjct: 345 -----TQEQVQDYVNKTNSHLPAG-KQVE----------IS-----LVNGA---KNLVVS 380
Query: 138 ----DLRLFTR--RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISL---G 188
L R KA LD + ++ K F++ +F P++
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSG--LDQSR--IPFSE-RK----LKFSN-RFL-PVASPFHS 429
Query: 189 HYLLAYASMFRRDIER 204
H L+ + + +D+ +
Sbjct: 430 HLLVPASDLINKDLVK 445
Score = 31.9 bits (72), Expect = 0.19
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIA 62
LDI +N P L + G + + E VD L E I I
Sbjct: 1662 LDIVINN----------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 63 HVTMLGERNIIDEQDKELIVKT 84
+ + +K L+ T
Sbjct: 1712 EHS----TSYTFRSEKGLLSAT 1729
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta
protein, lyase, aromatic amino acid biosynthesis; 1.5A
{Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB:
1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A*
3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Length = 146
Score = 32.8 bits (76), Expect = 0.039
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
LG R E + T ++ IE EL ++ + E++L+ I
Sbjct: 15 RLGRR----EPA---VYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWI 62
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP:
c.23.13.1
Length = 143
Score = 32.4 bits (75), Expect = 0.043
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
LG R E + + +TL DIE D+ L ++L N E +LI I
Sbjct: 13 RLGSR----EPE---VFGRQTLTDIETDLFQFAEALHIQLTFFQSNHEGDLIDAI 60
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic
amino acid biosynthesis, drug target, citrazinic acid, S
genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis}
PDB: 3n59_A*
Length = 172
Score = 32.6 bits (75), Expect = 0.048
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
LG R E + T ++ IE EL ++ + E++L+ I
Sbjct: 41 RLGRR----EPA---VYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWI 88
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center
for structural genomics of infec diseases, csgid,
unknown function; 1.60A {Bifidobacterium longum}
Length = 151
Score = 32.5 bits (75), Expect = 0.055
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGR 123
LG R + D + + L + +L +E+E + E+E++R +
Sbjct: 17 RLGVR----QPD---VYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWM----- 64
Query: 124 KLHTGRSRNDQVVL 137
H VV+
Sbjct: 65 --HQAADEKTPVVM 76
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A
{Thermus thermophilus}
Length = 149
Score = 32.1 bits (74), Expect = 0.074
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
+LG R E + + TL+++E E EL + + N E +LI +
Sbjct: 12 LLGRR----EPE---VYGRTTLEELEALCEAWGAELGLGVVFRQTNYEGQLIEWV 59
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase,
shikimate pathway, dodecameric quaternary structure;
HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1
PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Length = 156
Score = 31.7 bits (73), Expect = 0.082
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 16/74 (21%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGR 123
+LG+ + + I TL D+E ++ N E EL+ I
Sbjct: 19 LLGQA----QPE---IYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWI----- 66
Query: 124 KLHTGRSRNDQVVL 137
H R + +V+
Sbjct: 67 --HEARLNHCGIVI 78
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid
biosynthesis, aromatic amino acid biosynthesis, lyase,
structural genomics; 1.65A {Yersinia pestis}
Length = 153
Score = 31.7 bits (73), Expect = 0.083
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
+LG R E + TL +I +E + V L + N E LI I
Sbjct: 20 LLGTR----EPE---KYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSI 67
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino
acid biosynthesis, lyase; 1.7A {Actinobacillus
pleuropneumoniae} SCOP: c.23.13.1
Length = 154
Score = 31.7 bits (73), Expect = 0.084
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
MLG+R E I +TL DIE ++ EL+ N E LI RI
Sbjct: 14 MLGKR----EPH---IYGSQTLSDIEQHLQQSAQAQGYELDYFQANGEESLINRI 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.41
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 22/50 (44%)
Query: 18 DKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIA-HVTM 66
+K + LK+L Q S+ LY +D A ++A TM
Sbjct: 18 EK-QALKKL-----QASLK---------------LYADDSAPALAIKATM 46
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Length = 167
Score = 29.1 bits (66), Expect = 0.76
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEH--GKVELKVELEDIHMNIESELIRRI 118
+LG R E + +L DIE E+ N E +I RI
Sbjct: 27 LLGTR----EPE---KYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRI 76
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway,
aromatic amino acid biosynthesis, lyase, sulphonamide;
HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A*
2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Length = 176
Score = 29.1 bits (66), Expect = 0.77
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHG--KVELKVELEDIHMNIESELIRRI 118
MLG R + + + TL I ++ + L VELE N E E+I +I
Sbjct: 22 MLGHR----DPR---LYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKI 71
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.4
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 7 EDNEE--GEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHV 64
E+ + E D K ++Q W ++ + E+ Q+ +E + +++ R
Sbjct: 92 EEQRKRLQELD--AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA-------- 141
Query: 65 TMLGERNIIDEQDKELI 81
++ + D ++I
Sbjct: 142 ----DKAFYQQPDADII 154
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 26.7 bits (60), Expect = 7.2
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 19/89 (21%)
Query: 37 EFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI-------VKTLKDIE 89
E + + I+ ++ RE + A M + + + + V +L +
Sbjct: 138 EKINELAVDITSEKSSGRELLE-RCARTAMSSK---LIHNNADFFVKMCVDAVLSLDRND 193
Query: 90 YDIEHGKVELKV--ELEDIHMNIESELIR 116
D + ++ +E+ S I
Sbjct: 194 LDDKLIGIKKIPGGAMEE------SLFIN 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.396
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,656,991
Number of extensions: 228338
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 46
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)