RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17728
(231 letters)
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 169 bits (429), Expect = 5e-51
Identities = 77/199 (38%), Positives = 115/199 (57%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + + I+ L
Sbjct: 3 LWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGL 62
Query: 86 KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRR 145
+ + G +L EDIH E L IG KLHTGRSRNDQVV DLRL+ R+
Sbjct: 63 DKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQ 122
Query: 146 NIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERL 205
L LL + ++ + A+ + + PG+TH Q AQPI H++L++A RD ERL
Sbjct: 123 TCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERL 182
Query: 206 LDCRRRVNVNPLGSAALGG 224
L+ R+R+NV PLGS A+ G
Sbjct: 183 LEVRKRINVLPLGSGAIAG 201
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 164 bits (416), Expect = 4e-49
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 1 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 60
Query: 86 KDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTR 144
+ D+ + L+ + EDIH +E +LI ++G +G+KLHTGRSRNDQV DL+L+ +
Sbjct: 61 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCK 120
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
+ L+ L AQ ++ +MPG+TH Q AQP++ H+ LAY M RD R
Sbjct: 121 DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 180
Query: 205 LLDCRRRVNVNPLGSAALGG 224
L D +R++V+PLG AL G
Sbjct: 181 LQDALKRLDVSPLGCGALAG 200
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 155 bits (391), Expect = 2e-45
Identities = 66/176 (37%), Positives = 99/176 (56%)
Query: 36 NEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG 95
+ +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+ L+ I + G
Sbjct: 2 DPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKG 61
Query: 96 KVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLL 155
+K EDIH E L IG++ KLHTGRSRNDQVV DL+LF + ++ + LL
Sbjct: 62 VFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLL 121
Query: 156 DTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRR 211
+K L A + I+PG+ H Q AQPI +LL++A RD ERL + ++R
Sbjct: 122 QLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKR 177
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 89.2 bits (220), Expect = 2e-21
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 8/175 (4%)
Query: 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH- 107
+E ++ + I E I ++D + I + I ++E E H
Sbjct: 8 EENRFKAWLEVEILACEAWAELGDIPKEDVQKIRENASFDIERI------NEIEQETRHD 61
Query: 108 -MNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQ 166
+ + +G + +H G + D V L ++ L++ L + V+ L A+
Sbjct: 62 VVAFTRAVSETLGEERKWVHYGLTSTDVVDTALSYLIKQANSILLQDLENFVEILKNKAK 121
Query: 167 LHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
HK+ +M G TH A+P + G L + +R++ER V + A
Sbjct: 122 EHKYTVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAASGVEFGKMSGAV 176
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 83.3 bits (205), Expect = 3e-19
Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 39/230 (16%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTML---------GERNIIDEQ 76
LW Q+S+ F IS E + S+ H L + ++ E+
Sbjct: 18 LWGAQTQRSLEHF------RIS------TEKMPTSLIHALALTKRAAAKVNEDLGLLSEE 65
Query: 77 DKELIVKTLKDIEYDIEHGKVELKVE-----------LEDIHMNIESELIRRIGNVGRKL 125
I + ++ + L + + ++ N SEL+ + + RK+
Sbjct: 66 KASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKV 125
Query: 126 HTGRSRNDQVVLDLRLFTRRNIKA-------LIKLLLDTVKQLTRLAQLHKHHIMPGFTH 178
H N + T ++ A LI L + L ++ + G TH
Sbjct: 126 HPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTH 185
Query: 179 FQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGGEFLI 228
Q A P++LG + + +M +++ + V LG A+G
Sbjct: 186 LQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNT 235
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 77.2 bits (189), Expect = 4e-17
Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 31/206 (15%)
Query: 56 DIAGSIAHVTML--------------GERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101
I G H ++ E ++D++ + IVK ++ + + +
Sbjct: 31 PITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDP 90
Query: 102 ELEDIHMNIESELIRRIGNVGRKL-----------------HTGRSRNDQVVLDLRLFTR 144
+I I N +L + +S ND +
Sbjct: 91 IQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVL 150
Query: 145 RNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIER 204
+ LI+ ++ + A I G TH Q A PI LG AYA + RDIER
Sbjct: 151 SLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIER 210
Query: 205 LLDCRRRVNVNPLGSAALGGEFLIKK 230
+ + R + +G+ A+G
Sbjct: 211 IANTRNNLYDINMGATAVGTGLNADP 236
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 77.2 bits (189), Expect = 4e-17
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 4/163 (2%)
Query: 61 IAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGN 120
+A E +I + E I K D+E K + D+ +E + IG
Sbjct: 27 LAVTRAYEELGMIPKGVTERIRNNAK---IDVELFKKIEEKTNHDVVAFVE-GIGSMIGE 82
Query: 121 VGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQ 180
R H G + +D + L K L++ L + L +A +KH G TH
Sbjct: 83 DSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGV 142
Query: 181 FAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
A+P S G +L + S +R+++RL V+ + A
Sbjct: 143 HAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGN 185
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 75.5 bits (184), Expect = 1e-16
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 5/181 (2%)
Query: 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE-DIH 107
D L + +A + +I + +I + K I+ + L +I
Sbjct: 18 DRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIA 77
Query: 108 MNIESELIRRI----GNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTR 163
+ +L + + R +H G + D + L R + + + +
Sbjct: 78 IPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALS 137
Query: 164 LAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALG 223
AQ ++H +M G T Q A PI+LGH L +AS F+RD++R+ + RV V LG A
Sbjct: 138 QAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGS 197
Query: 224 G 224
Sbjct: 198 L 198
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 73.5 bits (179), Expect = 8e-16
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 3/176 (1%)
Query: 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH- 107
D + + A ++ I + YD +
Sbjct: 19 DRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIP 78
Query: 108 --MNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLA 165
+ + + R +H G + D + L L R + + L L++ A
Sbjct: 79 LVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQA 138
Query: 166 QLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAA 221
H + G T Q A P++LG L R +RL + R R+ V G A+
Sbjct: 139 LKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGAS 194
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 70.3 bits (171), Expect = 1e-14
Identities = 24/171 (14%), Positives = 60/171 (35%), Gaps = 18/171 (10%)
Query: 72 IIDEQDKELIVKTLKDIEYDIEH-GKVELKVELEDIHMNIESELIRRIGNVG-------- 122
I + I+ ++ + + + + V ++ + N+G
Sbjct: 67 TIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQK 126
Query: 123 ---------RKLHTGRSRNDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIM 173
++ +S ND R+ ++ L+ + + R A + +
Sbjct: 127 GEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILK 186
Query: 174 PGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGSAALGG 224
G T Q A P++LG A++ + + +++ + + LG+ A+G
Sbjct: 187 MGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGT 237
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 68.2 bits (166), Expect = 4e-14
Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 19/181 (10%)
Query: 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED----IHMNIES 112
+ S A V +D + + I + ++ L V +MN
Sbjct: 51 LKKSAAIVNE--SLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANE 108
Query: 113 ELIRRIG------------NVGRKLHTGRSRNDQVVLDLRLFTRRNI-KALIKLLLDTVK 159
+ R + + +S ND + + I LI L +
Sbjct: 109 VISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKN 168
Query: 160 QLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGS 219
L ++ H + G TH Q A P++LG Y I+R+ + ++ G
Sbjct: 169 ALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGG 228
Query: 220 A 220
Sbjct: 229 T 229
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 63.3 bits (153), Expect = 2e-12
Identities = 26/187 (13%), Positives = 63/187 (33%), Gaps = 19/187 (10%)
Query: 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELI- 115
+ + A + E + E+ + I++ +++ L V +
Sbjct: 49 LKKAAARANL--ELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNE 106
Query: 116 ---------------RRIGNVGRKLHTGRSRNDQVVLDLRLFTRRNIK-ALIKLLLDTVK 159
+ + ++ G+S ND + + + L + ++
Sbjct: 107 VIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIR 166
Query: 160 QLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAYASMFRRDIERLLDCRRRVNVNPLGS 219
T AQ + G TH A PI+LG + ++A+ + + + + + + +G
Sbjct: 167 TFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGG 226
Query: 220 AALGGEF 226
A+G
Sbjct: 227 TAVGTGL 233
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 27.9 bits (60), Expect = 0.87
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 49 DEVLYREDIAGSIAHVTM-LGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH 107
VL D +A + N + + +V +L+ +E D V L + +
Sbjct: 2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVF 61
Query: 108 MN 109
Sbjct: 62 SA 63
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster
[TaxId: 7227]}
Length = 150
Score = 26.5 bits (58), Expect = 1.8
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 71 NIIDEQD--KELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESEL----IRRIGNVGRK 124
I+DE ++L+ K ++ G L + + + +I +
Sbjct: 24 KILDENSCWRKLMSIIPKGMDVQACSGAGCLNFP---AEIKKGFKYTAQDVFQIDEAANR 80
Query: 125 LHTGRSRNDQVVLD----LRLFTRRNIKALIKLLL 155
L +S++ ++ + +L R + L++LL+
Sbjct: 81 LPPDQSKSQMMIDEWKTSGKLNERPTVGVLLQLLV 115
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 95
Score = 24.7 bits (54), Expect = 4.2
Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 19 KPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDK 78
+P++++++ + + + ++ E I + + L ED+ + I+E K
Sbjct: 3 RPEDIREMMLLALKGNFLKAREKLRE-ILLKQGLSGEDVLVQMHKEVF---NLPIEEPKK 58
Query: 79 ELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124
L+ + + + + G E ++LE L+ + +G+K
Sbjct: 59 VLLADKIGEYNFRLVEGANE-IIQLEA--------LLAQFTLIGKK 95
>d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon)
[TaxId: 9755]}
Length = 151
Score = 25.0 bits (54), Expect = 5.3
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 72 IIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSR 131
++ E + +L++ +E D+ ++ + L H E + + +
Sbjct: 1 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSH----PETLEKFDRFKHLKTEAEMK 56
Query: 132 NDQVVLDLRLFTRRNIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQ 183
+ + + + A++K +L LAQ H + +F
Sbjct: 57 ASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFIS 108
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus
mykiss) [TaxId: 8022]}
Length = 142
Score = 25.0 bits (54), Expect = 6.0
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 146 NIKALIKLLLDTVKQLTRLAQLHKHHIMPGFTHFQFAQPISLGHYLLAY 194
I + L+ D V ++ L+ LH + +F+ L H +L
Sbjct: 66 AIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKI-----LSHNILVT 109
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 24.9 bits (54), Expect = 6.9
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 66 MLGERNIIDEQDKELIV---KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVG 122
LG R ++ L+V K D ++ E ++ + + E I + N+
Sbjct: 56 ELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNL- 114
Query: 123 RKLHTGRSRNDQVVLDLRLFTRRNIK 148
+ T +D V DL+ RN+
Sbjct: 115 KLALTAGIGSDHV--DLQSAIDRNVT 138
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 144
Score = 24.8 bits (54), Expect = 7.2
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGRSRNDQVVLDLRLF 142
T ++ IE EL ++ + E++L+ I H + V+L+
Sbjct: 25 TTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWI-------HQAADAAEPVILNAGGL 77
Query: 143 TRRNIK 148
T ++
Sbjct: 78 THTSVA 83
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 25.1 bits (53), Expect = 7.8
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 50 EVLYREDIAGSIAHVTM--LGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL 99
++ Y + + V RN + + + L + G V L
Sbjct: 19 DITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLL 70
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 120
Score = 24.3 bits (53), Expect = 9.4
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 55 EDIAGSIAHVTMLGER---NIIDEQD-KELIVKTLKDIE 89
GS T E+ +I D + VK K ++
Sbjct: 76 GVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLD 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.396
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 873,479
Number of extensions: 41464
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 34
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)