BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17729
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 27 WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
W G F + + +FN S++ D L+RED+ + H ML ++ ++ E I+K L
Sbjct: 6 WGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLD 65
Query: 87 DIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
IE +IE G + ELED+HMN+E+ L +G G KLHT
Sbjct: 66 RIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHT 106
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 62
Query: 86 KDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIGNVGRKLHT 127
+ D+ + L+ + EDIH +E +LI ++G +G+KLHT
Sbjct: 63 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHT 105
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G +K EDIH E L IG++ KLHT
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHT 111
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G +K EDIH E L IG++ KLHT
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHT 111
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G +K EDIH E L IG++ KLHT
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHT 111
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G +K EDIH E L IG++ KLHT
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHT 111
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG 68
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G +K EDI+ E L IG++ KLHT
Sbjct: 69 LEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHT 111
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 22 ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81
E ++LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + + I
Sbjct: 4 ESQKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQI 63
Query: 82 VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
+ L + + G +L EDIH E L IG KLHT
Sbjct: 64 LHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHT 109
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 22 ELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELI 81
E +LW G F +++ +++FN SI+ D L+ D+ GS A+ L + ++ + + + I
Sbjct: 4 ESGKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQI 63
Query: 82 VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
+ L + + G +L EDIH E L IG KLHT
Sbjct: 64 LHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHT 109
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +++ N SI+ D+ L DI SIA+ L + I+ + + E I+
Sbjct: 7 KLMGGRFVGSTDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G +K EDIH E L IG++ KLHT
Sbjct: 67 LEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHT 109
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +Q + SIS ++ L DI SIA+ L + I+ + + E I+
Sbjct: 7 KLMGGRFVGSTDPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I ++ G + + EDI E L IG++ KLHT
Sbjct: 67 LEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHT 109
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 39 LQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE 98
+++ N SI+ D+ L DI GS+A+ L + I+ + + E I+ L+ I + G
Sbjct: 5 MEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFV 64
Query: 99 LKVELEDIHMNIESELIRRIGNVGRKLHT 127
+K EDIH E L IG++ KL+T
Sbjct: 65 VKQSDEDIHTANERRLKELIGDIAGKLNT 93
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S + +Q + S+S ++ L DI SIA+ L + I+ + + E I+
Sbjct: 6 KLMGGRFVGSTDPIMQMLSTSMSTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 65
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G + EDIH E L IG++ KL+T
Sbjct: 66 LEKISEEWSKGVFVVTQSDEDIHTANERRLKELIGDIAGKLNT 108
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
+L G F S++ ++ + SIS ++ L DI S+A+ L + +I+ + + E I+
Sbjct: 7 KLLGGRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSG 66
Query: 85 LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G + + EDI IE L IG++ KL T
Sbjct: 67 LEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQT 109
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 233 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 290
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 239 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 296
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 EEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGE 69
EG T P+ L +W F S+ LQQF + ED++G+++H++ LGE
Sbjct: 253 SEGHDPTMTHPQFLN-VWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLS-LGE 310
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|B Chain B, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|H Chain H, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|K Chain K, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 441
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 57 IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG---KVELKVE-LEDIHMNIES 112
+AGS T LG+ ++ D++ + I+KT+ D+ Y + G +EL + L ++ E
Sbjct: 231 LAGSADFKTELGQSDLFDQRLQSRIIKTV-DVSYGGDAGFNQAIELAADTLSNVKYVQEK 289
Query: 113 ELIRRI 118
+LI+R
Sbjct: 290 KLIQRF 295
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIRRIGN 120
I+YD HGK + VE + H+ ++ ++IR + N
Sbjct: 47 IKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNN 79
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 44 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 44 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 44 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 45 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 88 IEYDIEHGKVELKVELEDIHMNIESELIR 116
++YD HG+ + VE++D H+ + + IR
Sbjct: 45 LKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With
Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With
Nadh
Length = 388
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAH 63
K+ WT +++M EF+ +ES V+ + D+A I+
Sbjct: 48 KKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQ 87
>pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEF|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 41 QFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
Q+ S+S+DE+ Y D G+I + M E + + E + K K
Sbjct: 265 QYRRSVSIDELFYNPD--GTIKRIVMTTE-GVAPNKSPERVKKAAK 307
>pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEE|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 41 QFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
Q+ S+S+DE+ Y D G+I + M E + + E + K K
Sbjct: 265 QYRRSVSIDELFYNPD--GTIKRIVMTTE-GVAPNKSPERVKKAAK 307
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 48 VDEVLYR-EDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101
VD +L++ ++ S H+TML DE D + + + ++ ++HGK+ L+V
Sbjct: 126 VDYLLHQLKNNPSSRRHITMLWNP---DELDAMALTPCVYETQWYVKHGKLHLEV 177
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 48 VDEVLYR-EDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101
VD +L++ ++ S H+TML DE D + + + ++ ++HGK+ L+V
Sbjct: 127 VDYLLHQLKNNPSSRRHITMLWNP---DELDAMALTPCVYETQWYVKHGKLHLEV 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,880,501
Number of Sequences: 62578
Number of extensions: 149616
Number of successful extensions: 372
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 44
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)