Query psy17729
Match_columns 127
No_of_seqs 112 out of 1047
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:29:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 1.6E-32 3.5E-37 232.5 10.2 104 24-127 3-106 (459)
2 KOG1316|consensus 100.0 5.2E-31 1.1E-35 217.1 8.9 103 25-127 7-109 (464)
3 PRK06389 argininosuccinate lya 100.0 1.7E-28 3.8E-33 207.5 10.3 99 25-127 2-102 (434)
4 PLN02646 argininosuccinate lya 99.9 7.6E-27 1.6E-31 199.3 10.6 103 25-127 17-119 (474)
5 TIGR00838 argH argininosuccina 99.9 1.1E-22 2.3E-27 172.6 10.3 102 26-127 1-103 (455)
6 PRK00855 argininosuccinate lya 99.9 8.1E-22 1.8E-26 167.5 9.7 103 25-127 5-107 (459)
7 PRK04833 argininosuccinate lya 99.8 5.8E-20 1.3E-24 156.2 10.9 103 25-127 2-105 (455)
8 PRK12308 bifunctional arginino 99.8 1.2E-19 2.5E-24 158.8 11.0 103 25-127 2-105 (614)
9 PRK06705 argininosuccinate lya 99.8 1.7E-19 3.7E-24 155.1 9.9 101 25-127 10-112 (502)
10 PRK02186 argininosuccinate lya 99.6 7.1E-16 1.5E-20 139.6 9.2 113 3-127 394-512 (887)
11 cd01359 Argininosuccinate_lyas 99.5 1.1E-13 2.3E-18 117.0 8.7 83 45-127 1-83 (435)
12 PRK14515 aspartate ammonia-lya 99.5 9.4E-14 2E-18 119.3 7.6 89 38-126 36-134 (479)
13 PRK00485 fumC fumarate hydrata 99.4 4.8E-13 1E-17 114.3 6.9 98 25-126 20-129 (464)
14 PF00206 Lyase_1: Lyase; Inte 99.3 2.4E-12 5.1E-17 104.5 6.8 99 29-127 1-107 (312)
15 PRK12425 fumarate hydratase; P 99.3 1.5E-11 3.3E-16 105.3 8.1 87 38-124 27-123 (464)
16 cd01334 Lyase_I Lyase class I 99.2 1.9E-11 4.1E-16 99.7 7.1 74 54-127 2-76 (325)
17 PLN00134 fumarate hydratase; P 99.2 2.8E-11 6E-16 103.5 8.0 89 38-126 19-121 (458)
18 PRK12273 aspA aspartate ammoni 99.1 1.8E-10 4E-15 98.7 7.7 89 38-126 30-132 (472)
19 cd01596 Aspartase_like asparta 99.1 1.5E-10 3.3E-15 98.8 6.8 97 24-124 15-121 (450)
20 cd01357 Aspartase Aspartase. T 99.1 3.7E-10 8E-15 96.4 7.2 91 34-124 20-121 (450)
21 cd01595 Adenylsuccinate_lyase_ 99.0 1.4E-10 3.1E-15 96.6 4.0 77 49-127 7-85 (381)
22 cd01362 Fumarase_classII Class 98.9 1.6E-09 3.4E-14 92.6 6.3 97 24-124 15-121 (455)
23 PRK13353 aspartate ammonia-lya 98.9 5.3E-09 1.1E-13 89.8 7.3 87 38-124 30-126 (473)
24 cd01360 Adenylsuccinate_lyase_ 98.8 6.6E-09 1.4E-13 87.0 5.9 75 49-127 13-87 (387)
25 PRK06390 adenylosuccinate lyas 98.8 3.4E-09 7.4E-14 90.3 3.6 77 49-127 21-98 (451)
26 TIGR00839 aspA aspartate ammon 98.8 1E-08 2.2E-13 88.1 6.4 89 38-126 25-126 (468)
27 TIGR00979 fumC_II fumarate hyd 98.8 1.5E-08 3.2E-13 86.8 6.8 99 25-127 17-127 (458)
28 TIGR02426 protocat_pcaB 3-carb 98.7 8.3E-09 1.8E-13 85.1 3.8 80 46-127 14-95 (338)
29 cd01597 pCLME prokaryotic 3-ca 98.6 1.3E-08 2.8E-13 86.3 2.5 77 49-127 17-95 (437)
30 PRK08540 adenylosuccinate lyas 98.6 1.9E-08 4.1E-13 85.6 3.3 76 49-127 21-99 (449)
31 TIGR00928 purB adenylosuccinat 98.6 7.5E-08 1.6E-12 81.6 6.4 79 37-127 8-93 (435)
32 PRK08470 adenylosuccinate lyas 98.5 2.4E-07 5.3E-12 79.0 5.6 74 49-127 16-90 (442)
33 PRK09285 adenylosuccinate lyas 98.2 2.5E-06 5.3E-11 73.3 5.0 94 25-127 10-119 (456)
34 PRK05975 3-carboxy-cis,cis-muc 97.7 4.5E-05 9.8E-10 63.4 4.0 77 49-127 26-104 (351)
35 PRK07492 adenylosuccinate lyas 96.1 0.031 6.7E-07 47.9 7.8 70 50-127 17-93 (435)
36 cd03302 Adenylsuccinate_lyase_ 94.8 0.12 2.5E-06 44.3 7.0 84 29-127 3-92 (436)
37 PRK07380 adenylosuccinate lyas 94.6 0.12 2.6E-06 44.3 6.6 71 49-127 16-90 (431)
38 cd01598 PurB PurB_like adenylo 91.3 0.49 1.1E-05 40.6 5.6 71 49-127 7-97 (425)
39 COG0015 PurB Adenylosuccinate 87.9 3.5 7.5E-05 35.8 8.2 70 49-126 16-93 (438)
40 PRK09053 3-carboxy-cis,cis-muc 82.3 8.5 0.00019 33.0 8.0 88 25-127 6-104 (452)
41 PF10925 DUF2680: Protein of u 79.8 13 0.00027 23.5 6.4 44 51-94 11-54 (59)
42 PLN02848 adenylosuccinate lyas 78.9 5.8 0.00013 34.4 5.9 75 49-127 32-122 (458)
43 PF09851 SHOCT: Short C-termin 75.9 7.1 0.00015 21.3 3.7 27 60-86 4-30 (31)
44 PF09920 DUF2150: Uncharacteri 67.5 32 0.0007 26.7 7.0 61 53-119 39-99 (190)
45 PF07408 DUF1507: Protein of u 64.8 19 0.00042 24.8 4.7 38 48-90 44-81 (90)
46 PRK13666 hypothetical protein; 50.4 33 0.00072 23.7 3.9 38 48-90 46-83 (92)
47 PF14164 YqzH: YqzH-like prote 49.5 64 0.0014 20.9 4.9 39 69-116 22-60 (64)
48 PF01756 ACOX: Acyl-CoA oxidas 39.6 1.4E+02 0.0031 22.1 6.4 57 60-116 93-164 (187)
49 TIGR03282 methan_mark_13 putat 37.9 1.6E+02 0.0035 25.1 6.9 61 58-119 121-186 (352)
50 PF09925 DUF2157: Predicted me 36.5 37 0.0008 24.4 2.6 21 66-86 3-23 (145)
51 PRK01026 tetrahydromethanopter 36.1 89 0.0019 20.9 4.2 22 70-91 9-30 (77)
52 PF10335 DUF294_C: Putative nu 33.3 81 0.0018 22.6 4.0 30 60-89 64-93 (145)
53 COG0298 HypC Hydrogenase matur 32.9 65 0.0014 21.8 3.2 22 71-92 54-75 (82)
54 PF07647 SAM_2: SAM domain (St 32.5 58 0.0013 19.7 2.8 24 66-89 43-66 (66)
55 PF04380 BMFP: Membrane fusoge 32.4 1.5E+02 0.0032 19.4 5.7 27 65-91 39-65 (79)
56 COG0114 FumC Fumarase [Energy 32.4 3.5E+02 0.0076 23.8 8.4 106 13-122 6-122 (462)
57 TIGR00074 hypC_hupF hydrogenas 32.4 77 0.0017 20.9 3.5 22 70-91 50-71 (76)
58 PF04210 MtrG: Tetrahydrometha 32.0 1.2E+02 0.0026 19.9 4.2 20 72-91 8-27 (70)
59 cd08785 CARD_CARD9-like Caspas 31.3 87 0.0019 21.1 3.6 28 55-83 14-41 (86)
60 PRK10413 hydrogenase 2 accesso 30.7 70 0.0015 21.4 3.1 22 70-91 57-78 (82)
61 PF07812 TfuA: TfuA-like prote 29.0 97 0.0021 22.4 3.7 27 63-89 89-115 (120)
62 TIGR01149 mtrG N5-methyltetrah 28.9 1.4E+02 0.0031 19.6 4.2 20 72-91 8-27 (70)
63 PF10415 FumaraseC_C: Fumarase 28.5 1.3E+02 0.0028 18.4 3.8 18 66-83 31-48 (55)
64 PF03683 UPF0175: Uncharacteri 28.3 1.6E+02 0.0035 18.9 4.5 49 60-111 22-74 (76)
65 PF11848 DUF3368: Domain of un 28.2 97 0.0021 18.2 3.1 25 59-85 4-28 (48)
66 PF09317 DUF1974: Domain of un 28.0 1.4E+02 0.0029 24.6 4.9 32 61-92 248-279 (284)
67 COG4064 MtrG Tetrahydromethano 27.4 1.9E+02 0.004 19.2 4.5 21 71-91 10-30 (75)
68 PF00681 Plectin: Plectin repe 26.4 71 0.0015 18.5 2.3 17 68-84 28-44 (45)
69 PF11950 DUF3467: Protein of u 25.4 1E+02 0.0023 20.7 3.2 26 69-94 60-85 (92)
70 PF00536 SAM_1: SAM domain (St 24.7 1.3E+02 0.0028 18.0 3.4 23 67-89 42-64 (64)
71 cd08810 CARD_BCL10 Caspase act 24.2 1.4E+02 0.0031 20.0 3.7 27 55-82 14-40 (84)
72 COG4342 Uncharacterized protei 24.0 78 0.0017 26.1 2.7 47 58-107 82-128 (291)
73 PF10904 DUF2694: Protein of u 23.8 1.8E+02 0.0039 20.4 4.1 37 82-118 57-96 (101)
74 PF04994 TfoX_C: TfoX C-termin 23.7 1E+02 0.0022 20.3 2.9 33 59-91 11-45 (81)
75 smart00454 SAM Sterile alpha m 23.6 1.4E+02 0.0029 17.4 3.3 26 65-90 42-67 (68)
76 PF06883 RNA_pol_Rpa2_4: RNA p 23.1 1.5E+02 0.0032 18.5 3.3 21 71-91 2-22 (58)
77 PF08335 GlnD_UR_UTase: GlnD P 21.7 1.8E+02 0.0039 20.6 4.1 30 60-89 54-83 (142)
78 PF07798 DUF1640: Protein of u 21.1 2.2E+02 0.0047 21.2 4.6 30 61-91 5-34 (177)
79 COG2306 Predicted RNA-binding 21.0 2.3E+02 0.0051 21.9 4.7 36 64-99 128-163 (183)
80 PRK13662 hypothetical protein; 21.0 1.9E+02 0.0041 22.1 4.2 43 70-114 130-172 (177)
81 COG1071 AcoA Pyruvate/2-oxoglu 20.9 1.2E+02 0.0026 25.8 3.4 27 65-91 295-321 (358)
82 PF05299 Peptidase_M61: M61 gl 20.6 1.8E+02 0.0039 20.8 3.8 45 50-96 38-83 (122)
83 COG2445 Uncharacterized conser 20.4 1.2E+02 0.0025 22.2 2.8 27 64-90 71-99 (138)
84 TIGR02530 flg_new flagellar op 20.3 1.7E+02 0.0036 20.4 3.5 35 57-91 15-50 (96)
85 KOG3520|consensus 20.0 4.3E+02 0.0094 26.1 7.1 40 51-90 393-443 (1167)
86 PF11630 DUF3254: Protein of u 20.0 78 0.0017 22.2 1.7 18 66-83 83-100 (100)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=99.98 E-value=1.6e-32 Score=232.47 Aligned_cols=104 Identities=45% Similarity=0.724 Sum_probs=102.4
Q ss_pred hhhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy17729 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (127)
Q Consensus 24 ~~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~ 103 (127)
.++|+|||++++++.+..|++|+.||++|+++||.+|+||++||.++|||+++++.+|+++|.+|++++.+|+|.+++++
T Consensus 3 ~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~~~ 82 (459)
T COG0165 3 NKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDD 82 (459)
T ss_pred CCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhChhhcccCC
Q psy17729 104 EDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 104 EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
||||++||++|++++|++||||||
T Consensus 83 EDvH~aiE~~L~~~iG~~ggkLht 106 (459)
T COG0165 83 EDVHTAIEARLIERIGDVGGKLHT 106 (459)
T ss_pred ccHHHHHHHHHHHHHhhhhchhcc
Confidence 999999999999999999999998
No 2
>KOG1316|consensus
Probab=99.97 E-value=5.2e-31 Score=217.11 Aligned_cols=103 Identities=35% Similarity=0.581 Sum_probs=102.4
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E 104 (127)
|||||||.++++|.+.+|+.|++||++||+.|+.+|+||+.||.++|+|+.+|..+|+++|++|+.+|..|+|.+.|++|
T Consensus 7 KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~p~dE 86 (464)
T KOG1316|consen 7 KLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLNPNDE 86 (464)
T ss_pred hhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCceEeCCCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhChhhcccCC
Q psy17729 105 DIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 105 Dih~~iE~~L~e~iG~~gg~LHT 127 (127)
|||++.|++|+|.||+.||||||
T Consensus 87 DvHtanErrL~eliG~~agKlHT 109 (464)
T KOG1316|consen 87 DVHTANERRLTELIGEIAGKLHT 109 (464)
T ss_pred hhhhHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999999998
No 3
>PRK06389 argininosuccinate lyase; Provisional
Probab=99.95 E-value=1.7e-28 Score=207.55 Aligned_cols=99 Identities=26% Similarity=0.531 Sum_probs=95.3
Q ss_pred hhhhccCCCchH-HHHHHH-hhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q psy17729 25 QLWTGCFQQSMN-EFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE 102 (127)
Q Consensus 25 ~lw~gR~~~~~~-~~~~~~-~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~ 102 (127)
|+|+|||+++++ +.+++| +.|+.||++++++||.+|+||++||.++||||++++++|+++|.++.+ |.|.++|+
T Consensus 2 klw~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~L~~i~~----~~~~~~~~ 77 (434)
T PRK06389 2 KIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYK----NGIEIDLD 77 (434)
T ss_pred CCcccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc----CCCcCCCC
Confidence 499999999999 679999 899999999999999999999999999999999999999999999965 77999999
Q ss_pred CcchhHHHHHHHHHHhChhhcccCC
Q psy17729 103 LEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 103 ~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
+||+|++||++|++++|++||||||
T Consensus 78 ~EDvh~~iE~~L~~~~G~~gg~lht 102 (434)
T PRK06389 78 LEDVHTAIENFVIRRCGDMFKNFRL 102 (434)
T ss_pred CCchHHHHHHHHHHHhchhhhhhcc
Confidence 9999999999999999999999998
No 4
>PLN02646 argininosuccinate lyase
Probab=99.94 E-value=7.6e-27 Score=199.29 Aligned_cols=103 Identities=46% Similarity=0.775 Sum_probs=100.2
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E 104 (127)
++|+|||++++++.+.+|++|+.||++|++|||.+|+||++||.++||||++++++|+++|.+|..+...|+|.++++.|
T Consensus 17 ~~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~~~e 96 (474)
T PLN02646 17 KLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKFEWRPDRE 96 (474)
T ss_pred hhhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999887779999999999
Q ss_pred chhHHHHHHHHHHhChhhcccCC
Q psy17729 105 DIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 105 Dih~~iE~~L~e~iG~~gg~LHT 127 (127)
|+|+++|++|++++|++||++||
T Consensus 97 d~h~~iE~~L~e~~G~~g~~lH~ 119 (474)
T PLN02646 97 DVHMNNEARLTELIGEPAKKLHT 119 (474)
T ss_pred chHHHHHHHHHHHhchhhCcccC
Confidence 99999999999999999999997
No 5
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.88 E-value=1.1e-22 Score=172.60 Aligned_cols=102 Identities=42% Similarity=0.675 Sum_probs=98.0
Q ss_pred hhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcc
Q psy17729 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (127)
Q Consensus 26 lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~ED 105 (127)
+|+|||++++++.+..|++|+.+|+++++++|.+++||++||.++|+|+++++++|+++|.+|......++|.+++.+||
T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d 80 (455)
T TIGR00838 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGREGPFILDPDDED 80 (455)
T ss_pred CCCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCcCCCCCcCc
Confidence 69999999999999999999999999999999999999999999999999999999999999998866688999999999
Q ss_pred hhHHHHHHHHHHhC-hhhcccCC
Q psy17729 106 IHMNIESELIRRIG-NVGRKLHT 127 (127)
Q Consensus 106 ih~~iE~~L~e~iG-~~gg~LHT 127 (127)
+|++||++|++++| +.|+++|+
T Consensus 81 ~~~~ie~~l~e~~g~~~g~~iH~ 103 (455)
T TIGR00838 81 IHMAIERELIDRVGEDLGGKLHT 103 (455)
T ss_pred HHHHHHHHHHHHhCCCccCCccC
Confidence 99999999999999 88999996
No 6
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.86 E-value=8.1e-22 Score=167.46 Aligned_cols=103 Identities=50% Similarity=0.800 Sum_probs=99.1
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E 104 (127)
++|++||++++++.+++|+.|+.+|++++++++.+++||++||.++|+|+++++++|+++|.++......+.|.++++.|
T Consensus 5 ~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~al~~i~~~~~~~~~~~~~~~~ 84 (459)
T PRK00855 5 KLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAGLDEILEEIEAGKFEFSPELE 84 (459)
T ss_pred cccccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCcccCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999876668899999999
Q ss_pred chhHHHHHHHHHHhChhhcccCC
Q psy17729 105 DIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 105 Dih~~iE~~L~e~iG~~gg~LHT 127 (127)
|+|++||++|++++|+.||++|+
T Consensus 85 d~~~~ie~~l~~~~g~~g~~iH~ 107 (459)
T PRK00855 85 DIHMAIEARLTERIGDVGGKLHT 107 (459)
T ss_pred cHHHHHHHHHHHHhccccCcccC
Confidence 99999999999999988999996
No 7
>PRK04833 argininosuccinate lyase; Provisional
Probab=99.82 E-value=5.8e-20 Score=156.23 Aligned_cols=103 Identities=31% Similarity=0.573 Sum_probs=95.5
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVEL 103 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g-~~~~~~~~ 103 (127)
.+|++||+.++++.+..|..|+.+|+.|++|||.+++||+.||.++||||++++++|+++|.++.++...+ .+.+++..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 81 (455)
T PRK04833 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDA 81 (455)
T ss_pred cCcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcCCcccCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999997764333 56688999
Q ss_pred cchhHHHHHHHHHHhChhhcccCC
Q psy17729 104 EDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 104 EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
||+|++||++|++++|+.|||+|+
T Consensus 82 edv~~~ie~~L~~~~g~~g~~lH~ 105 (455)
T PRK04833 82 EDIHSWVEGKLIDKVGDLGKKLHT 105 (455)
T ss_pred chHHHHHHHHHHHHhccccCcccC
Confidence 999999999999999999999996
No 8
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.81 E-value=1.2e-19 Score=158.78 Aligned_cols=103 Identities=33% Similarity=0.581 Sum_probs=95.7
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVEL 103 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g-~~~~~~~~ 103 (127)
.+|+|||++++++.+..|++|..+|+.|+.+||.+|+||+.||.++||||++++++|.++|..+..+...+ .+.+++..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~ 81 (614)
T PRK12308 2 ALWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDA 81 (614)
T ss_pred cccccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999997653333 56688999
Q ss_pred cchhHHHHHHHHHHhChhhcccCC
Q psy17729 104 EDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 104 EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
||+|+++|++|++++|++|||+|+
T Consensus 82 ed~h~~ie~~L~~~~g~~~~~iH~ 105 (614)
T PRK12308 82 EDIHSWVEQQLIGKVGDLGKKLHT 105 (614)
T ss_pred ccHHHHHHHHHHHHhcccccceec
Confidence 999999999999999999999996
No 9
>PRK06705 argininosuccinate lyase; Provisional
Probab=99.80 E-value=1.7e-19 Score=155.08 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=92.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHh-hhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYRED-IAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~d-i~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~ 103 (127)
++|++||++++++.+. |+.|+.+|.+.+.++ +.+++||+.||.++||||++++++|.++|.++.. +..+.|.+++..
T Consensus 10 ~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~~~~~-~~~~~l~~~~~~ 87 (502)
T PRK06705 10 KSEGADFPGKTYVDCV-LQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVEE-IPEEQLLYTEQH 87 (502)
T ss_pred HHhcccCCCCcchhHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-cccCccccCCCC
Confidence 7999999999999999 999999986666555 6699999999999999999999999999998843 467889999999
Q ss_pred cchhHHHHHHHHHHhC-hhhcccCC
Q psy17729 104 EDIHMNIESELIRRIG-NVGRKLHT 127 (127)
Q Consensus 104 EDih~~iE~~L~e~iG-~~gg~LHT 127 (127)
||||++||+++++++| ++|||+||
T Consensus 88 edv~~~ie~~l~~~~G~~~g~~lH~ 112 (502)
T PRK06705 88 EDLFFLVEHLISQEAKSDFVSNMHI 112 (502)
T ss_pred CchHHHHHHHHHHhcCchhhccccC
Confidence 9999999999999998 79999997
No 10
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.64 E-value=7.1e-16 Score=139.63 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=95.4
Q ss_pred ccCCccccccCC--CCCCCchhhhhhhhccCCCchHHHHHHHhh---CHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHH
Q psy17729 3 LDIPEDNEEGEQ--DTPDKPKELKQLWTGCFQQSMNEFLQQFNE---SISVDEVLYREDIAGSIAHVTMLGERNIIDEQD 77 (127)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~m~~lw~gR~~~~~~~~~~~~~~---s~~~D~~l~~~di~~~~AH~~mL~~~GII~~ee 77 (127)
+.|.++++++++ ++++.+++ ...|.+.+..+ ...-+...+++++.+++||+.||.++||||+++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~ 462 (887)
T PRK02186 394 IDIGDAARAAALNDAGAGAARP-----------GLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPER 462 (887)
T ss_pred EEEcccccccccccCCCCcccc-----------CCChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456777777754 77777776 56667777665 344568889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhC-hhhcccCC
Q psy17729 78 KELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHT 127 (127)
Q Consensus 78 a~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG-~~gg~LHT 127 (127)
+++|+++|.++... ....+.++++.||+|+++|++|++++| ++||||||
T Consensus 463 a~~I~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~~L~~~~g~~~~~~lH~ 512 (887)
T PRK02186 463 ARPLLDAHRRLRDA-GFAPLLARPAPRGLYMLYEAYLIERLGEDVGGVLQT 512 (887)
T ss_pred HHHHHHHHHHHHHh-HHhhCcCCCCCcchHHHHHHHHHHHhChhhhcccCc
Confidence 99999999998655 445788999999999999999999999 79999997
No 11
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=99.49 E-value=1.1e-13 Score=116.96 Aligned_cols=83 Identities=55% Similarity=0.790 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChhhcc
Q psy17729 45 SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124 (127)
Q Consensus 45 s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~gg~ 124 (127)
|+.+|++++++++.+.+||++||.+.|+||++++.+|++++.++...+.++.|.++++.+|+|+++|++|++++|+.||+
T Consensus 1 ~~~~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~ 80 (435)
T cd01359 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIGDVGGK 80 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999876677889999999999999999999999999999
Q ss_pred cCC
Q psy17729 125 LHT 127 (127)
Q Consensus 125 LHT 127 (127)
+|+
T Consensus 81 iH~ 83 (435)
T cd01359 81 LHT 83 (435)
T ss_pred hhc
Confidence 995
No 12
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=99.47 E-value=9.4e-14 Score=119.26 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=80.3
Q ss_pred HHHHH-hhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC--cc------hhH
Q psy17729 38 FLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL--ED------IHM 108 (127)
Q Consensus 38 ~~~~~-~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~--ED------ih~ 108 (127)
.+++| +++..+|.+++++++.+++||+.||.++|+|+++++.+|+++|++|......+.|.+++.+ +| +|+
T Consensus 36 a~~~f~~~~~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~t~~nmnvne 115 (479)
T PRK14515 36 AVENFPITGYKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANE 115 (479)
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCCCCcccCCCcccccchHHH
Confidence 58889 6889999999999999999999999999999999999999999999987666889999988 55 666
Q ss_pred HHHHHHHHHhCh-hhcccC
Q psy17729 109 NIESELIRRIGN-VGRKLH 126 (127)
Q Consensus 109 ~iE~~L~e~iG~-~gg~LH 126 (127)
.||+++++++|+ .|+++|
T Consensus 116 vie~~~~~~~G~~~g~~~~ 134 (479)
T PRK14515 116 VIANRALELLGMEKGDYHY 134 (479)
T ss_pred HHHHHHHHHhCcccCCccc
Confidence 699999999995 688766
No 13
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.40 E-value=4.8e-13 Score=114.25 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred hhhhccCCCchHHHHHHHhhC-HHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC--
Q psy17729 25 QLWTGCFQQSMNEFLQQFNES-ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-- 101 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~-- 101 (127)
++|++| +...+++|..| ..+|.+++++++.+.+||+.||.++|+||++++++|.++|+.+......+.|..++
T Consensus 20 ~l~g~~----~~~~~~~f~~s~~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~~~~~~~~~~ 95 (464)
T PRK00485 20 ALWGAQ----TQRSLENFPIGGERMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQ 95 (464)
T ss_pred cccchh----hHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCCCcchhh
Confidence 699987 55679999766 99999999999999999999999999999999999999999996542347788888
Q ss_pred --CCcchhHHH----HHHHHHHhChh---hcccC
Q psy17729 102 --ELEDIHMNI----ESELIRRIGNV---GRKLH 126 (127)
Q Consensus 102 --~~EDih~~i----E~~L~e~iG~~---gg~LH 126 (127)
..+|+|++| +.++.+..|+. ++++|
T Consensus 96 ~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h 129 (464)
T PRK00485 96 TGSGTQSNMNVNEVIANRASELLGGELGSKKPVH 129 (464)
T ss_pred ccccccccccHHHHHHHHHHHhcCccccccCccC
Confidence 889998888 55555666743 45566
No 14
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.33 E-value=2.4e-12 Score=104.51 Aligned_cols=99 Identities=28% Similarity=0.339 Sum_probs=91.4
Q ss_pred ccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCcchh
Q psy17729 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHG-KVELKVELEDIH 107 (127)
Q Consensus 29 gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g-~~~~~~~~EDih 107 (127)
|||..+.++....|+.+..+|.++..+++.+..||+.++++.|+|+++.+.+|.+++.++..++... .|.+++..+|+|
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~ 80 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLDDAFELDEIEEDIG 80 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSSSHH
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccccccchhhhhccch
Confidence 7899899999999999999999999999999999999999999999999999999999999864433 577899999999
Q ss_pred HHHHHHHHHHhC-------hhhcccCC
Q psy17729 108 MNIESELIRRIG-------NVGRKLHT 127 (127)
Q Consensus 108 ~~iE~~L~e~iG-------~~gg~LHT 127 (127)
..++..|.+.+| +.++++|+
T Consensus 81 ~~~~~~l~~~~~e~~~~~~~~~~~vH~ 107 (312)
T PF00206_consen 81 HAVEANLNEVLGELLGEPPEAGGWVHY 107 (312)
T ss_dssp HHHHHHHHHHHHHHHTHSSGGGGGTTT
T ss_pred hHHHHHHHHHhhhhhhccccccccccC
Confidence 999999999998 78999996
No 15
>PRK12425 fumarate hydratase; Provisional
Probab=99.26 E-value=1.5e-11 Score=105.25 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=73.8
Q ss_pred HHHHHh-hCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc---c-CCCCcchhHHH--
Q psy17729 38 FLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE---L-KVELEDIHMNI-- 110 (127)
Q Consensus 38 ~~~~~~-~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~---~-~~~~EDih~~i-- 110 (127)
.+.+|. +...+...+.+....+.+||+.||.++|+|++++++.|+++|++|......+.|. | .++.||+|+++
T Consensus 27 a~~nf~~~~~~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~ed~~mnvne 106 (464)
T PRK12425 27 SLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNE 106 (464)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCCccCCCCCCcchHHHHHHH
Confidence 456665 3345558899999999999999999999999999999999999999886668888 4 44599999999
Q ss_pred --HHHHHHHhCh-hhcc
Q psy17729 111 --ESELIRRIGN-VGRK 124 (127)
Q Consensus 111 --E~~L~e~iG~-~gg~ 124 (127)
|+++.+++|+ .||+
T Consensus 107 vi~~~~~e~~G~~~g~~ 123 (464)
T PRK12425 107 VIAGRANELAGNGRGGK 123 (464)
T ss_pred HHHHHHHHHhCcccccc
Confidence 7888888884 8888
No 16
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.24 E-value=1.9e-11 Score=99.66 Aligned_cols=74 Identities=28% Similarity=0.363 Sum_probs=66.6
Q ss_pred HHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChh-hcccCC
Q psy17729 54 REDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNV-GRKLHT 127 (127)
Q Consensus 54 ~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~-gg~LHT 127 (127)
++++.+..||+.||.+.|+|+++++..|.+++..+..+.....+...++.||.|+++|++|++++|+. ||++|+
T Consensus 2 ~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH~ 76 (325)
T cd01334 2 RADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHT 76 (325)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCcc
Confidence 57888999999999999999999999999999999876444445688999999999999999999965 999996
No 17
>PLN00134 fumarate hydratase; Provisional
Probab=99.23 E-value=2.8e-11 Score=103.49 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHhhC---HHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC---C-----Ccch
Q psy17729 38 FLQQFNES---ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV---E-----LEDI 106 (127)
Q Consensus 38 ~~~~~~~s---~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~---~-----~EDi 106 (127)
.+++|-.| ..+...+.+....+.+||++||.++|+|+++++.+|+++|++|......++|.+++ + ++||
T Consensus 19 a~~nf~~~~~~~~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~~~~f~~~~~~~g~g~~~~~~v 98 (458)
T PLN00134 19 SLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNA 98 (458)
T ss_pred HHHhcCCCCCccCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCccccccccCCcccccCcH
Confidence 46677644 46668888888999999999999999999999999999999998875568888887 3 7888
Q ss_pred hHHHHHHHHHHhC-hhhcc--cC
Q psy17729 107 HMNIESELIRRIG-NVGRK--LH 126 (127)
Q Consensus 107 h~~iE~~L~e~iG-~~gg~--LH 126 (127)
|++||+++++++| ++||+ +|
T Consensus 99 ~evie~~l~e~~g~~~g~~~~lH 121 (458)
T PLN00134 99 NEVIANRAAEILGGPVGEKSPVH 121 (458)
T ss_pred HHHHHHHHHHHhCcccCCccccC
Confidence 9999999999999 58988 88
No 18
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.12 E-value=1.8e-10 Score=98.75 Aligned_cols=89 Identities=21% Similarity=0.196 Sum_probs=72.1
Q ss_pred HHHHHhh---CHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC----CcchhHHH
Q psy17729 38 FLQQFNE---SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE----LEDIHMNI 110 (127)
Q Consensus 38 ~~~~~~~---s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~----~EDih~~i 110 (127)
.+..|-- .++.-.+++++++.+++||+.||.++||||++++.+|.++|..+.+....+.|.+++. .||+|++|
T Consensus 30 ~~~~f~~~~~~~~~~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v 109 (472)
T PRK12273 30 AVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNA 109 (472)
T ss_pred HHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCcccchhhccccchhhhHH
Confidence 3556642 2333388999999999999999999999999999999999999976534466887777 89999999
Q ss_pred HHH----HHHHhC-hhhcc--cC
Q psy17729 111 ESE----LIRRIG-NVGRK--LH 126 (127)
Q Consensus 111 E~~----L~e~iG-~~gg~--LH 126 (127)
|.. +++++| +.|++ +|
T Consensus 110 ~~~i~~~~~e~~g~~~~~~~~vH 132 (472)
T PRK12273 110 NEVIANRALELLGHEKGEYQYVH 132 (472)
T ss_pred HHHHHHHHHHHhCcccCCcceeC
Confidence 988 667999 45656 99
No 19
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.10 E-value=1.5e-10 Score=98.78 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=79.1
Q ss_pred hhhhhccCCCchHHHHHHHhhC-HHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC-
Q psy17729 24 KQLWTGCFQQSMNEFLQQFNES-ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV- 101 (127)
Q Consensus 24 ~~lw~gR~~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~- 101 (127)
+++||+ ..+..+..|+.| -.++..++++++.++.||+.||.++||||++++.+|.++|..+.....+++|..++
T Consensus 15 ~~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~i~~~~~~~~~~~~~~ 90 (450)
T cd01596 15 DAYYGA----QTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIAGKLDDQFPLDVW 90 (450)
T ss_pred cccccH----hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcccHH
Confidence 468998 667778888854 34679999999999999999999999999999999999999997643346777766
Q ss_pred ---CCcchhHHHHH----HHHHHhCh-hhcc
Q psy17729 102 ---ELEDIHMNIES----ELIRRIGN-VGRK 124 (127)
Q Consensus 102 ---~~EDih~~iE~----~L~e~iG~-~gg~ 124 (127)
..+|+|++||. ++++++|+ .|+|
T Consensus 91 ~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~ 121 (450)
T cd01596 91 QTGSGTSTNMNVNEVIANRALELLGGKKGKY 121 (450)
T ss_pred hccCcccccchHHHHHHHHHHHHhccccCCc
Confidence 58899998887 55577884 5666
No 20
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.06 E-value=3.7e-10 Score=96.37 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=71.6
Q ss_pred chHHH-HHHHh-hCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC----cchh
Q psy17729 34 SMNEF-LQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL----EDIH 107 (127)
Q Consensus 34 ~~~~~-~~~~~-~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~----EDih 107 (127)
+.... +..|- .-..+|.+++++++.+++||+.||.++||||++++++|.+++..+......+.|.+++.. ||+|
T Consensus 20 ~~t~~~~~~~~~~~~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~d~~~~~~~~~~~~~~~~ 99 (450)
T cd01357 20 IQTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTN 99 (450)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCccchhhccccchhh
Confidence 44443 44553 235679999999999999999999999999999999999999999764222667777776 5977
Q ss_pred HHHH----HHHHHHhC-hhhcc
Q psy17729 108 MNIE----SELIRRIG-NVGRK 124 (127)
Q Consensus 108 ~~iE----~~L~e~iG-~~gg~ 124 (127)
+++| .++++++| ++|+|
T Consensus 100 ~~~~~vi~~~~~e~~g~~~g~~ 121 (450)
T cd01357 100 MNANEVIANRALELLGHEKGEY 121 (450)
T ss_pred hhHhHHHHHHHHHHhCccccCC
Confidence 7777 66778899 56886
No 21
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=99.04 E-value=1.4e-10 Score=96.60 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC-CCCcchhHHHHHHHHHHhCh-hhcccC
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VELEDIHMNIESELIRRIGN-VGRKLH 126 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~-~~~EDih~~iE~~L~e~iG~-~gg~LH 126 (127)
|..++++++.+++||+.||.++||||++++.+|.++|..+..+.. .-.+.. +..+|+ .++|++|++++|+ +||++|
T Consensus 7 ~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~-~~~~~~~~~~~~v-~~~e~~L~~~~g~~~~~~vH 84 (381)
T cd01595 7 EENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAE-RIAEIEKETGHDV-IAFVYALAEKCGEDAGEYVH 84 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHH-HHHHHHHHhCcCc-HHHHHHHHHHhhhHhhhHee
Confidence 788999999999999999999999999999999999998733211 111232 557888 9999999999996 999999
Q ss_pred C
Q psy17729 127 T 127 (127)
Q Consensus 127 T 127 (127)
+
T Consensus 85 ~ 85 (381)
T cd01595 85 F 85 (381)
T ss_pred c
Confidence 6
No 22
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=98.94 E-value=1.6e-09 Score=92.64 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=77.1
Q ss_pred hhhhhccCCCchHHHHHHH-hhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC-
Q psy17729 24 KQLWTGCFQQSMNEFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV- 101 (127)
Q Consensus 24 ~~lw~gR~~~~~~~~~~~~-~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~- 101 (127)
+++||. .....+..| +++..++..+++..+.+.+||+.||.+.||||+++++.|.++|..+......++|..++
T Consensus 15 ~~~~g~----~~~~~~~~f~~~~~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al~~i~~~~~~~~~~~~~~ 90 (455)
T cd01362 15 DALWGA----QTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVW 90 (455)
T ss_pred ccchhH----HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCceehh
Confidence 478943 455567788 46667789999999999999999999999999999999999999996542347787777
Q ss_pred ---CCcchhHHHHHHHH----HHhC-hhhcc
Q psy17729 102 ---ELEDIHMNIESELI----RRIG-NVGRK 124 (127)
Q Consensus 102 ---~~EDih~~iE~~L~----e~iG-~~gg~ 124 (127)
..+|+|++++..+. ++.| ++||+
T Consensus 91 ~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~ 121 (455)
T cd01362 91 QTGSGTQTNMNVNEVIANRAIELLGGVLGSK 121 (455)
T ss_pred hccccccccccHHHHHHHHHHHhcCcccCCc
Confidence 88898888665554 7778 45554
No 23
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=98.87 E-value=5.3e-09 Score=89.83 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=69.7
Q ss_pred HHHHHhh-CHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc----chhHH---
Q psy17729 38 FLQQFNE-SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE----DIHMN--- 109 (127)
Q Consensus 38 ~~~~~~~-s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E----Dih~~--- 109 (127)
.+..|-. ...+...+++..+.+.+||+.||.++|+||++++.+|.+++..+......+.|.+++..| |+|++
T Consensus 30 ~~~~f~~~~~~~~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~ 109 (473)
T PRK13353 30 AVENFPITGYKIHPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANE 109 (473)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCCcchhhccccchhcchhhH
Confidence 3555642 234458889999999999999999999999999999999999997653336787887775 97776
Q ss_pred -HHHHHHHHhCh-hhcc
Q psy17729 110 -IESELIRRIGN-VGRK 124 (127)
Q Consensus 110 -iE~~L~e~iG~-~gg~ 124 (127)
|+++|++++|+ .|++
T Consensus 110 vi~~~l~e~~g~~~g~~ 126 (473)
T PRK13353 110 VIANRALELLGGEKGDY 126 (473)
T ss_pred HHHHHHHHHhCccccCC
Confidence 88999999994 6774
No 24
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=98.82 E-value=6.6e-09 Score=87.00 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChhhcccCC
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
|...+++.+.+..||+.||.++|+||++++++|.+++..+..++.. + ..+..+|+ .++|++|++++|++||++|+
T Consensus 13 ~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~~--~-~~~~~~dv-~~~e~~L~~~~g~~~~~lH~ 87 (387)
T cd01360 13 EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVKE--I-EAETKHDV-IAFVTAIAEYCGEAGRYIHF 87 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHHH--H-HHHhCCCh-HHHHHHHHHHHHHhhhheeC
Confidence 6677899999999999999999999999999999999765543211 1 22445666 79999999999999999996
No 25
>PRK06390 adenylosuccinate lyase; Provisional
Probab=98.80 E-value=3.4e-09 Score=90.33 Aligned_cols=77 Identities=19% Similarity=0.108 Sum_probs=62.2
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC-CcchhHHHHHHHHHHhChhhcccCC
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE-LEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~-~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
|...+++++.+..||+.||.++||||++++..|.++|.....+... -...... .+|+ .++|++|++++|++||++|+
T Consensus 21 ~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~-~~~~~~~~~~dv-~~~~~~L~~~~g~~~~~iH~ 98 (451)
T PRK06390 21 DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLER-VREIESEIKHDV-MALVEALSEQCSAGKNYVHF 98 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHH-HHHHHHHhCCCc-HHHHHHHHHHhhhhhhheec
Confidence 6778999999999999999999999999999999998764222111 0112233 6799 89999999999999999996
No 26
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=98.79 E-value=1e-08 Score=88.10 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=69.7
Q ss_pred HHHHHhh-CHHHH--HHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH-hcCCcccCCCC----cchhHH
Q psy17729 38 FLQQFNE-SISVD--EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDI-EHGKVELKVEL----EDIHMN 109 (127)
Q Consensus 38 ~~~~~~~-s~~~D--~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~-~~g~~~~~~~~----EDih~~ 109 (127)
.+..|-. -..+. ...+++.+.+..||++||.++|+||+++++.|.+++.++.+.- .++.+.+++.. ||+|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~~~ 104 (468)
T TIGR00839 25 ASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMN 104 (468)
T ss_pred HHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccccccccHHHccCccccccc
Confidence 3555542 22333 7889999999999999999999999999999999998875420 11246666666 558888
Q ss_pred H----HHHHHHHhC-hhhcccC
Q psy17729 110 I----ESELIRRIG-NVGRKLH 126 (127)
Q Consensus 110 i----E~~L~e~iG-~~gg~LH 126 (127)
+ |.+|++++| +.||++|
T Consensus 105 v~~vie~~l~e~~g~~~g~~~H 126 (468)
T TIGR00839 105 TNEVIANLALELMGHQKGEYQY 126 (468)
T ss_pred hHHHHHHHHHHHhCccccCeee
Confidence 6 999999999 7999998
No 27
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=98.77 E-value=1.5e-08 Score=86.80 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=73.6
Q ss_pred hhhhccCCCchHHHHHHHh-hCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC---
Q psy17729 25 QLWTGCFQQSMNEFLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK--- 100 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~-~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~--- 100 (127)
++||- ...-.+..|. +-..++..+++..+.+.+||+.||.+.|+||++.+.+|.+++.+|...-..++|..+
T Consensus 17 ~~~g~----~t~r~~~~f~~~~~~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~ 92 (458)
T TIGR00979 17 KYWGA----QTQRSLENFKIGTEKMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEILAGKLDDHFPLVVWQ 92 (458)
T ss_pred chhhH----HHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCceeccc
Confidence 57742 2233466665 334566899999999999999999999999999999999999999764223556555
Q ss_pred -CCCcchhHH----HHHHHHHHhC-hhhcc--cCC
Q psy17729 101 -VELEDIHMN----IESELIRRIG-NVGRK--LHT 127 (127)
Q Consensus 101 -~~~EDih~~----iE~~L~e~iG-~~gg~--LHT 127 (127)
+..+++|++ |+.+|++++| +.||+ +||
T Consensus 93 ~~~~~~~~m~~~~via~~l~e~~g~~~g~~~~vH~ 127 (458)
T TIGR00979 93 TGSGTQSNMNVNEVIANRAIELLGGKLGSKQPVHP 127 (458)
T ss_pred ccccccccccHHHHHHHHHHHHcCcccCCCceeCC
Confidence 456655555 4559999998 57665 995
No 28
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.73 E-value=8.3e-09 Score=85.09 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCc-ccCCCCcchhHHHHHHHHHHhC-hhhc
Q psy17729 46 ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKV-ELKVELEDIHMNIESELIRRIG-NVGR 123 (127)
Q Consensus 46 ~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~-~~~~~~EDih~~iE~~L~e~iG-~~gg 123 (127)
+-.|..+++..+.+.+||+.||.++|+||++++++|.+++.++..+.. .+ .......+.+.++|++|++++| ++|+
T Consensus 14 i~sd~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~~d~~--~~~~~~~~~~~~~~~~~~~l~~~~g~~~g~ 91 (338)
T TIGR02426 14 LFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAAPDLE--ALAHAAATAGNPVIPLVKALRKAVAGEAAR 91 (338)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHH--HHHhHHHhcCCcHHHHHHHHHHHhCccccC
Confidence 445788899999999999999999999999999999999987632211 11 1234567788899999999999 6899
Q ss_pred ccCC
Q psy17729 124 KLHT 127 (127)
Q Consensus 124 ~LHT 127 (127)
++|+
T Consensus 92 ~vH~ 95 (338)
T TIGR02426 92 YVHR 95 (338)
T ss_pred cccC
Confidence 9996
No 29
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=98.64 E-value=1.3e-08 Score=86.27 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCcchhHHHHHHHHHHhC-hhhcccC
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIG-NVGRKLH 126 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~-~~~~~EDih~~iE~~L~e~iG-~~gg~LH 126 (127)
|..+++..+.+.+||+.||.++|+||+++++.|.+++.++..+ ...+. ..+..++.+.++|.+|++++| +.||++|
T Consensus 17 ~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~~~~~--~~~~~~~~~~~~~~v~a~e~~l~e~~g~~~g~~lH 94 (437)
T cd01597 17 DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLD--LEALAEATARTGHPAIPLVKQLTAACGDAAGEYVH 94 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCC--HHHHHHHHHHhCCCcHHHHHHHHHHcCccccCeee
Confidence 5667888999999999999999999999999999998776221 12221 233445556699999999999 5799999
Q ss_pred C
Q psy17729 127 T 127 (127)
Q Consensus 127 T 127 (127)
+
T Consensus 95 ~ 95 (437)
T cd01597 95 W 95 (437)
T ss_pred c
Confidence 6
No 30
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=98.63 E-value=1.9e-08 Score=85.63 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHH--HHHHHhcCCcccCCCCcchhHHHHHHHHHHhC-hhhccc
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKL 125 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~--l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG-~~gg~L 125 (127)
|...++..+.+..||+.||.++|+||++.++.|.++|.. +..+ ..+.+ .+..++.+.++|++|++++| +.|||+
T Consensus 21 ~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~-~~~~~--~~~~~~~v~~~e~~L~~~~~~~~~~~v 97 (449)
T PRK08540 21 EENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLE-RVKEI--EAEIHHDIMAVVKALSEVCEGDAGEYV 97 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHH-HHHHH--HHHhCCCcHHHHHHHHHHhhhhhhcce
Confidence 567788999999999999999999999999999999977 5322 11111 12345555999999999995 899999
Q ss_pred CC
Q psy17729 126 HT 127 (127)
Q Consensus 126 HT 127 (127)
|+
T Consensus 98 H~ 99 (449)
T PRK08540 98 HF 99 (449)
T ss_pred ec
Confidence 96
No 31
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=98.62 E-value=7.5e-08 Score=81.63 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=61.3
Q ss_pred HHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHH-------HHHHHHHHhcCCcccCCCCcchhHH
Q psy17729 37 EFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT-------LKDIEYDIEHGKVELKVELEDIHMN 109 (127)
Q Consensus 37 ~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~-------L~~l~~~~~~g~~~~~~~~EDih~~ 109 (127)
+.+..+.+ |...+.+.+.+.+||+.||.++||||+++++.|.++ +.++... .. ...+|+ .+
T Consensus 8 ~~~~~ifs----~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~~~~~~d~~~l~~~-~~------~~~~~v-~~ 75 (435)
T TIGR00928 8 PEMRAIWS----EENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKANFTDVDLARIKEI-EA------VTRHDV-KA 75 (435)
T ss_pred HHHHHHhC----HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCCCCccCHHHHHHH-HH------HHCcCh-HH
Confidence 35555432 467789999999999999999999999999999987 4334221 11 123555 99
Q ss_pred HHHHHHHHhChhhcccCC
Q psy17729 110 IESELIRRIGNVGRKLHT 127 (127)
Q Consensus 110 iE~~L~e~iG~~gg~LHT 127 (127)
+|++|++++|++||++|+
T Consensus 76 ~e~~l~~~~g~~~~~vh~ 93 (435)
T TIGR00928 76 VVYALKEKCGAEGEFIHF 93 (435)
T ss_pred HHHHHHHHhhhhhhheee
Confidence 999999999999999996
No 32
>PRK08470 adenylosuccinate lyase; Provisional
Probab=98.46 E-value=2.4e-07 Score=78.95 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=59.6
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHH-HHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChhhcccCC
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK-DIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~-~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
|...++..+.+..||+.||.++|+||++++..|.+++. ++... ..+ .++..+|++ ++++.|++++|+.|+++|+
T Consensus 16 ~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~~---~~~-~~~~~~dv~-~~v~~L~e~~g~~~~~vH~ 90 (442)
T PRK08470 16 MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIARI---DEI-EKTTKHDLI-AFLTSVSESLGEESRFVHY 90 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHHH---HHH-HHccCCChH-HHHHHHHHHccccccceec
Confidence 66778899999999999999999999999999999874 22111 111 246779995 5668999999988999996
No 33
>PRK09285 adenylosuccinate lyase; Provisional
Probab=98.17 E-value=2.5e-06 Score=73.25 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=67.5
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCC---CCHHHHHH---HHHHHHHHHHHHhcCCcc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI---IDEQDKEL---IVKTLKDIEYDIEHGKVE 98 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GI---I~~eea~~---Il~~L~~l~~~~~~g~~~ 98 (127)
..|++||+..+.+...-| -|..++++++.+..||+.+|.+.|+ ||+..+.. |.+.. ..+.++.+.
T Consensus 10 ~p~~~ry~~~~~e~~~~~-----s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~----~~~~~~d~~ 80 (456)
T PRK09285 10 SPLDGRYASKTAALRPIF-----SEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIV----ENFSEEDAA 80 (456)
T ss_pred CCCccccCCCCHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH----HhhCcccHH
Confidence 369999997544433334 2378899999999999999999998 55554444 54433 122223444
Q ss_pred cCCCCcch--h--HHHHHHHHHHhC------hhhcccCC
Q psy17729 99 LKVELEDI--H--MNIESELIRRIG------NVGRKLHT 127 (127)
Q Consensus 99 ~~~~~EDi--h--~~iE~~L~e~iG------~~gg~LHT 127 (127)
.-...|+. | .++|.+|.+++| ++|+++|+
T Consensus 81 ~i~~~e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~ 119 (456)
T PRK09285 81 RIKEIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHF 119 (456)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhcccCcchhHHhHccC
Confidence 44556777 8 999999999997 57899996
No 34
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=97.67 E-value=4.5e-05 Score=63.43 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCcchhHHHHHHHHHHhC-hhhcccC
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIG-NVGRKLH 126 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~-~~~~~EDih~~iE~~L~e~iG-~~gg~LH 126 (127)
|...++..+.+-.|++.++.++|+||++.+..|.+++..+..+.. .+. ......+.+..+++.|++++| +.|+++|
T Consensus 26 ~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~d~~--~~~~~~~~~g~~v~~~v~~l~~~~g~~~~~~vH 103 (351)
T PRK05975 26 AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFEPDLA--ALRHATARDGVVVPALVRQLRAAVGEEAAAHVH 103 (351)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHH--HHhhHHHhcCCcHHHHHHHHHHHhCchhhCccc
Confidence 667788999999999999999999999999999999977532211 111 223445667889999999998 6899999
Q ss_pred C
Q psy17729 127 T 127 (127)
Q Consensus 127 T 127 (127)
+
T Consensus 104 ~ 104 (351)
T PRK05975 104 F 104 (351)
T ss_pred C
Confidence 5
No 35
>PRK07492 adenylosuccinate lyase; Provisional
Probab=96.06 E-value=0.031 Score=47.88 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=50.3
Q ss_pred HHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHH-------HHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChhh
Q psy17729 50 EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL-------KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVG 122 (127)
Q Consensus 50 ~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L-------~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~g 122 (127)
...+...+.+-.|-+..+.+.|+||++.+.+|.+.. .+|... +. ...-| -.++|++|++++|+.|
T Consensus 17 ~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~~~~d~~~~~~~-~~------~~~h~-v~a~~~~L~~~~g~~~ 88 (435)
T PRK07492 17 ETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVARIDEI-EA------VTKHD-VIAFLTHLAEFVGPDA 88 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcccCCCHHHHHHH-HH------HhCCC-hHHHHHHHHHHhhHhh
Confidence 355666677777888889999999999999997652 222221 00 00111 4689999999999889
Q ss_pred cccCC
Q psy17729 123 RKLHT 127 (127)
Q Consensus 123 g~LHT 127 (127)
+++|+
T Consensus 89 ~~vH~ 93 (435)
T PRK07492 89 RFVHQ 93 (435)
T ss_pred hhhcC
Confidence 99996
No 36
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=94.78 E-value=0.12 Score=44.29 Aligned_cols=84 Identities=7% Similarity=-0.047 Sum_probs=55.3
Q ss_pred ccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCC-CCHHHHHHHHHHH-----HHHHHHHhcCCcccCCC
Q psy17729 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTL-----KDIEYDIEHGKVELKVE 102 (127)
Q Consensus 29 gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GI-I~~eea~~Il~~L-----~~l~~~~~~g~~~~~~~ 102 (127)
|||+.+ .+..+-+ |...+...+.+-.|-+....+.|+ ||++.+..|.+.. .+|... ....
T Consensus 3 ~ry~~~---~~~~~fs----~~~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~d~~~i~~~-------e~~~ 68 (436)
T cd03302 3 SRYASK---EMVYIFS----PRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEIAAAE-------EKKL 68 (436)
T ss_pred CCcCCH---HHHHHcC----hHHHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcCCHHHHHHH-------HHHh
Confidence 666632 4544433 234566667777777778888899 9999999997754 122221 1123
Q ss_pred CcchhHHHHHHHHHHhChhhcccCC
Q psy17729 103 LEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 103 ~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
.-||+..+. .|.+++|++|+++|+
T Consensus 69 ~hdv~a~~~-~l~~~~~~~~~~vH~ 92 (436)
T cd03302 69 RHDVMAHVH-AFGLLCPAAAGIIHL 92 (436)
T ss_pred CcCchHHHH-HHHHHhHhccCeeee
Confidence 346665555 689999999999996
No 37
>PRK07380 adenylosuccinate lyase; Provisional
Probab=94.55 E-value=0.12 Score=44.28 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHH----HHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChhhcc
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~----L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~gg~ 124 (127)
|...+.+.+.+-.|-+..+.+.|+||++.+..|.+. +.+|.+. + ....-||- ++.+.|.+++|+.|++
T Consensus 16 ~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~d~~~i~~~-~------~~~~h~v~-a~v~~l~~~~g~~~~~ 87 (431)
T PRK07380 16 DTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAKANFDPQRILEI-E------AEVRHDVI-AFLTNVNEYVGDAGRY 87 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCCHHHHHHH-H------HHhCCChH-HHHHHHHHHHHHhhcc
Confidence 556677777788899999999999999999999763 2223222 1 11223443 4667799999999999
Q ss_pred cCC
Q psy17729 125 LHT 127 (127)
Q Consensus 125 LHT 127 (127)
+|+
T Consensus 88 vH~ 90 (431)
T PRK07380 88 IHL 90 (431)
T ss_pred ccC
Confidence 996
No 38
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=91.29 E-value=0.49 Score=40.58 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCH------HHHHHHHHHHHH--------HHHHHhcCCcccCCCCcchhHHHHHHH
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDE------QDKELIVKTLKD--------IEYDIEHGKVELKVELEDIHMNIESEL 114 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~------eea~~Il~~L~~--------l~~~~~~g~~~~~~~~EDih~~iE~~L 114 (127)
|...+.+.+.+-.|.+..+.+.|+||+ +.+..|.+.... +... .. ..--| -.++|++|
T Consensus 7 ~~~~~~~~l~vE~ala~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~-~~------~~~hd-v~al~~~l 78 (425)
T cd01598 7 EYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEI-EA------TTNHD-VKAVEYFL 78 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHH-HH------HHCCC-cHHHHHHH
Confidence 566778888889999999999999999 888888764422 2121 00 01112 25899999
Q ss_pred HHHhC------hhhcccCC
Q psy17729 115 IRRIG------NVGRKLHT 127 (127)
Q Consensus 115 ~e~iG------~~gg~LHT 127 (127)
++++| +.|+++|+
T Consensus 79 ~~~~g~~~~~~~~~~~vH~ 97 (425)
T cd01598 79 KEKFETLGLLKKIKEFIHF 97 (425)
T ss_pred HHHhcccccchhhhhHhcc
Confidence 99997 46789996
No 39
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=87.91 E-value=3.5 Score=35.80 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=52.7
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHH-------HHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhC-h
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT-------LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-N 120 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~-------L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG-~ 120 (127)
+...+++-+.+-.|-+..+++-|+|+++.++.|.+. +.+|... +.. . .=|| .+++..|.+.+| +
T Consensus 16 ~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~ei-e~~-t-----~HdV-~a~v~~l~e~~~~~ 87 (438)
T COG0015 16 EEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEI-EAE-T-----GHDV-KALVRALAEKVGEE 87 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCHHHHHHH-HHH-h-----CCCc-HHHHHHHHHhcCcc
Confidence 455677778888899999999999999999888877 5555443 211 1 1122 678899999999 7
Q ss_pred hhcccC
Q psy17729 121 VGRKLH 126 (127)
Q Consensus 121 ~gg~LH 126 (127)
.++++|
T Consensus 88 ~~~~VH 93 (438)
T COG0015 88 ASEYVH 93 (438)
T ss_pred ccccee
Confidence 888988
No 40
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=82.35 E-value=8.5 Score=33.03 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=57.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHH-------HHHHHHhcCCc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK-------DIEYDIEHGKV 97 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~-------~l~~~~~~g~~ 97 (127)
+++++||+.+ .+.+.. -|...++..+.+-.|-+....+.|+||++.+..|.++-+ .+... .+.-
T Consensus 6 ~~~~~~~~~~---~~~~i~----s~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~~~~~--~~~~ 76 (452)
T PRK09053 6 RLTDLYFGSP---AMRAIF----SDRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQA--AALA 76 (452)
T ss_pred hhhhhhcCCH---HHHHHc----CcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCHHHHHHH--Hhhc
Confidence 3556666643 444432 256678888888899999999999999999999988642 22221 1100
Q ss_pred ccCCCCcchhHHHHHHHHHHhC----hhhcccCC
Q psy17729 98 ELKVELEDIHMNIESELIRRIG----NVGRKLHT 127 (127)
Q Consensus 98 ~~~~~~EDih~~iE~~L~e~iG----~~gg~LHT 127 (127)
-. --..+.+.|.+.+| +.++++|+
T Consensus 77 -~~-----~~~~lv~~l~~~~~~~~~~~~~~vH~ 104 (452)
T PRK09053 77 -GN-----LAIPLVKQLTAQVAARDAEAARYVHW 104 (452)
T ss_pred -CC-----chHHHHHHHHHHhcccCcchhccccC
Confidence 00 12334556788885 57899995
No 41
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=79.77 E-value=13 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=35.9
Q ss_pred HHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy17729 51 VLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEH 94 (127)
Q Consensus 51 ~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~ 94 (127)
.|+...+..-.+-+--..+.|+||++.|..|...++.-...+..
T Consensus 11 ~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~q 54 (59)
T PF10925_consen 11 ALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQ 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777888888999999999999999999988776543
No 42
>PLN02848 adenylosuccinate lyase
Probab=78.93 E-value=5.8 Score=34.39 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCC---CH---HHHHHHHHHHHHHH----HHHhcCCcccCCCCcchhHHHHHHHHHHh
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNII---DE---QDKELIVKTLKDIE----YDIEHGKVELKVELEDIHMNIESELIRRI 118 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII---~~---eea~~Il~~L~~l~----~~~~~g~~~~~~~~EDih~~iE~~L~e~i 118 (127)
|..++.+.+.+-.|.+..+.+.|+| |+ +.+..|.+....+. ..+.. . .....-| =.++|..|.+++
T Consensus 32 d~a~~~~~l~vE~ala~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~~~--~-e~~t~hd-v~a~~~~l~~~~ 107 (458)
T PLN02848 32 EFGLIRYRVLVEVKWLLKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEVKK--I-ERVTNHD-VKAVEYFLKQKC 107 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHhhHHHHHH--H-HHHhCCC-cHHHHHHHHHHh
Confidence 5677888888899999999999986 55 88888877552220 00000 0 0111123 356799999999
Q ss_pred C---h---hhcccCC
Q psy17729 119 G---N---VGRKLHT 127 (127)
Q Consensus 119 G---~---~gg~LHT 127 (127)
| + .++++|+
T Consensus 108 ~~~~~~~~~~~~vH~ 122 (458)
T PLN02848 108 KSHPELAKVLEFFHF 122 (458)
T ss_pred ccccchhhhhCcccC
Confidence 6 2 5689996
No 43
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=75.89 E-value=7.1 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=21.7
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy17729 60 SIAHVTMLGERNIIDEQDKELIVKTLK 86 (127)
Q Consensus 60 ~~AH~~mL~~~GII~~eea~~Il~~L~ 86 (127)
-+.....|..+|+||++|-.+..+.|.
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 356678899999999999988776653
No 44
>PF09920 DUF2150: Uncharacterized protein conserved in archaea (DUF2150); InterPro: IPR014518 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.51 E-value=32 Score=26.74 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=48.0
Q ss_pred HHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhC
Q psy17729 53 YREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG 119 (127)
Q Consensus 53 ~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG 119 (127)
+..|+....+-++.+.+.|-|++++|...++..+.|--. +.++..||.-..|+..-+...+
T Consensus 39 ~~dDv~lA~lKIi~~~~~~~l~keeAl~~L~~v~eIVl~------ev~~~~Ed~~~~i~~vQ~SL~~ 99 (190)
T PF09920_consen 39 FQDDVILACLKIIAAYQNGELSKEEALEELEEVREIVLS------EVDFDDEDKDMMIDSVQTSLVV 99 (190)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999999999998764 2345578887777766555443
No 45
>PF07408 DUF1507: Protein of unknown function (DUF1507); InterPro: IPR009983 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; however they form alpha helical bundles and are thought to be involved in control of cell shape [].; PDB: 2ODM_B 2GBO_B.
Probab=64.75 E-value=19 Score=24.78 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy17729 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEY 90 (127)
Q Consensus 48 ~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~ 90 (127)
.|..||-.--.++.| .+.|+|+.++++.|++.|++=..
T Consensus 44 lDTQmyGlSreIdFA-----Vrlgli~~~~Gk~ll~~LE~~Ls 81 (90)
T PF07408_consen 44 LDTQMYGLSREIDFA-----VRLGLISEEEGKQLLSELERELS 81 (90)
T ss_dssp HHHHHHHHHHHHHHH-----HHTTSS-HHHHHHHHHHHHHHHC
T ss_pred HHhHHhchhHHHHHH-----HHhCCccHHHHHHHHHHHHHHHH
Confidence 456666655555555 57899999999999998876443
No 46
>PRK13666 hypothetical protein; Provisional
Probab=50.36 E-value=33 Score=23.71 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy17729 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEY 90 (127)
Q Consensus 48 ~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~ 90 (127)
+|..||..--.++.| .+.|+|+.++++.|+..|++=..
T Consensus 46 lDTQmfGlSreVdFA-----vrlgli~~~~Gk~ll~~LE~~Ls 83 (92)
T PRK13666 46 LDTQMFGLSREVDFA-----VRLGLIDEEEGKQLLSRLERELS 83 (92)
T ss_pred HHHHHhhhHHHHHHH-----HHhccccHHHHHHHHHHHHHHHH
Confidence 456666655555554 56799999999999988876544
No 47
>PF14164 YqzH: YqzH-like protein
Probab=49.47 E-value=64 Score=20.87 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=29.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHHHH
Q psy17729 69 ERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIR 116 (127)
Q Consensus 69 ~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e 116 (127)
++-=+|+.|.+.|.+.+.....+ ...+|+|..||..+=+
T Consensus 22 ~~~pls~~E~~~L~~~i~~~~~~---------~~~~Dl~eiVeDvVY~ 60 (64)
T PF14164_consen 22 ECMPLSDEEWEELCKHIQERKNE---------EPDEDLHEIVEDVVYD 60 (64)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhc---------CCCchHHHHHHHHHHH
Confidence 44557889999998888877664 3468999999976544
No 48
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=39.59 E-value=1.4e+02 Score=22.05 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=40.2
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc---------------cCCCCcchhHHHHHHHHH
Q psy17729 60 SIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE---------------LKVELEDIHMNIESELIR 116 (127)
Q Consensus 60 ~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~---------------~~~~~EDih~~iE~~L~e 116 (127)
-.-|.--+.+.|+|+.+.+..|.+.+.++...+.+..+. +-..+.|||.++-.+...
T Consensus 93 i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~av~LVDAF~~~D~~L~S~iG~~DG~vYe~l~~~a~~ 164 (187)
T PF01756_consen 93 IEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPNAVALVDAFDFPDFFLNSPIGRYDGDVYEALFEWAKK 164 (187)
T ss_dssp HHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGGHHHHHHTT---HHHHT-STT-TT--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHcChhccccchHHHHHHHHHHH
Confidence 345666788999999999999999999999888776542 233467888877766543
No 49
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=37.88 E-value=1.6e+02 Score=25.06 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=41.1
Q ss_pred hhcHHHHHHHhhcCCCCHHHHHH---HHHHHHHHHHHH--hcCCcccCCCCcchhHHHHHHHHHHhC
Q psy17729 58 AGSIAHVTMLGERNIIDEQDKEL---IVKTLKDIEYDI--EHGKVELKVELEDIHMNIESELIRRIG 119 (127)
Q Consensus 58 ~~~~AH~~mL~~~GII~~eea~~---Il~~L~~l~~~~--~~g~~~~~~~~EDih~~iE~~L~e~iG 119 (127)
.|-..=+..+.+||+|+.+|..+ +++.=.++.+.. ..++ -+.|++.|.-..+=++|.+.+.
T Consensus 121 ~G~~~aLeAiidq~~i~~~e~~rq~~~l~~at~~ek~~g~a~~~-yi~p~~~d~~~~~~~~l~~~~~ 186 (352)
T TIGR03282 121 EGVIATLESAAEAGIIDEDEVERQKELLKKATEVEKKRGMAKRE-YIEPSYGDDKHKVAKRLVDLIQ 186 (352)
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHhchhhcc-ccCCCCCccHHHHHHHHHHHHh
Confidence 44455667889999999999876 343333333332 2222 2689999988888888888764
No 50
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=36.54 E-value=37 Score=24.39 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHH
Q psy17729 66 MLGERNIIDEQDKELIVKTLK 86 (127)
Q Consensus 66 mL~~~GII~~eea~~Il~~L~ 86 (127)
-+.++|+|+++.+.+|++-..
T Consensus 3 ~w~~~GlI~~~q~~~i~~~~~ 23 (145)
T PF09925_consen 3 RWVEQGLITPEQAEAILAFYG 23 (145)
T ss_pred hHHHCCCCCHHHHHHHHHHhh
Confidence 467999999999999988776
No 51
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=36.11 E-value=89 Score=20.93 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy17729 70 RNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 70 ~GII~~eea~~Il~~L~~l~~~ 91 (127)
+-++++++-+++.+-|+++.+.
T Consensus 9 ~viv~~~d~~~i~~rLD~iEeK 30 (77)
T PRK01026 9 QVVVDPKDFKEIQKRLDEIEEK 30 (77)
T ss_pred eeecCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999886
No 52
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=33.29 E-value=81 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=24.6
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy17729 60 SIAHVTMLGERNIIDEQDKELIVKTLKDIE 89 (127)
Q Consensus 60 ~~AH~~mL~~~GII~~eea~~Il~~L~~l~ 89 (127)
...=...|.++|+++++.+..+..++.-+.
T Consensus 64 T~eRl~~L~~~g~l~~~~~~~l~~A~~~l~ 93 (145)
T PF10335_consen 64 TLERLEALAEAGVLSPDDAEDLIEAFEFLL 93 (145)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 355567899999999999999998876653
No 53
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.94 E-value=65 Score=21.82 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy17729 71 NIIDEQDKELIVKTLKDIEYDI 92 (127)
Q Consensus 71 GII~~eea~~Il~~L~~l~~~~ 92 (127)
.+|++++|+..+.+|+++.+..
T Consensus 54 ~~idEeeAketle~l~e~~~~~ 75 (82)
T COG0298 54 SKIDEEEAKETLEALQEMFDAE 75 (82)
T ss_pred eecCHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999998863
No 54
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=32.46 E-value=58 Score=19.66 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHH
Q psy17729 66 MLGERNIIDEQDKELIVKTLKDIE 89 (127)
Q Consensus 66 mL~~~GII~~eea~~Il~~L~~l~ 89 (127)
.|.+.||-+.....+|++++++++
T Consensus 43 ~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 43 DLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcC
Confidence 567999999999999999998874
No 55
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=32.42 E-value=1.5e+02 Score=19.44 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=24.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy17729 65 TMLGERNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 65 ~mL~~~GII~~eea~~Il~~L~~l~~~ 91 (127)
.+|.+-++||++|.......|.+.+..
T Consensus 39 ~~l~kldlVtREEFd~q~~~L~~~r~k 65 (79)
T PF04380_consen 39 SALSKLDLVTREEFDAQKAVLARTREK 65 (79)
T ss_pred HHHHHCCCCcHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999886
No 56
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=32.41 E-value=3.5e+02 Score=23.82 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=67.0
Q ss_pred CCCCCCCch-hhhhhhhccCCCchHHHHHHHhhCHH-HHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy17729 13 EQDTPDKPK-ELKQLWTGCFQQSMNEFLQQFNESIS-VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEY 90 (127)
Q Consensus 13 ~~~~~~~~~-~m~~lw~gR~~~~~~~~~~~~~~s~~-~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~ 90 (127)
|.|+=+... +-.++|+. .....+..|.-+-. +-+++.+.....-+|=+..=.+-|.++++-+..|.++=++|.+
T Consensus 6 E~Dt~G~i~Vpad~~wgA----QTqRs~~nF~ig~~~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev~~ 81 (462)
T COG0114 6 EHDTMGEVEVPADALWGA----QTQRSLENFPIGGEKMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEVLA 81 (462)
T ss_pred ccccCccccccHHHHHHH----HHHHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence 334444433 23478884 22224555543333 5567777776667777777788999999999999999999987
Q ss_pred HHhcCCccc--------CCCCcchhHHHHHHHHHHhC-hhh
Q psy17729 91 DIEHGKVEL--------KVELEDIHMNIESELIRRIG-NVG 122 (127)
Q Consensus 91 ~~~~g~~~~--------~~~~EDih~~iE~~L~e~iG-~~g 122 (127)
.--++.|++ ..++=-+-..|=.+-++..| +.|
T Consensus 82 Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~gg~~g 122 (462)
T COG0114 82 GKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELG 122 (462)
T ss_pred CcccCCCCeEEEecCCCccccccHHHHHHHHHHHHhCcccC
Confidence 433455543 22344455666677777777 355
No 57
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=32.41 E-value=77 Score=20.89 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy17729 70 RNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 70 ~GII~~eea~~Il~~L~~l~~~ 91 (127)
...|++++|+.+++.|+++...
T Consensus 50 i~~ide~eA~e~l~~l~el~~~ 71 (76)
T TIGR00074 50 ISVLDEEEARETLDALQELFDA 71 (76)
T ss_pred hhhCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999775
No 58
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=31.98 E-value=1.2e+02 Score=19.93 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy17729 72 IIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 72 II~~eea~~Il~~L~~l~~~ 91 (127)
++++++-+++.+-|+++.+.
T Consensus 8 iv~~~~~~~i~~rLd~iEeK 27 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEK 27 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999886
No 59
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=31.32 E-value=87 Score=21.06 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=22.2
Q ss_pred HhhhhcHHHHHHHhhcCCCCHHHHHHHHH
Q psy17729 55 EDIAGSIAHVTMLGERNIIDEQDKELIVK 83 (127)
Q Consensus 55 ~di~~~~AH~~mL~~~GII~~eea~~Il~ 83 (127)
.++.++. +.--|.++||+++++...|..
T Consensus 14 ~~l~~~~-l~d~L~q~~VLt~~d~EeI~~ 41 (86)
T cd08785 14 RKINPSR-LTPYLRQCKVLDEQDEEEVLS 41 (86)
T ss_pred HHhhHHH-HHHHHHhcCCCCHHHHHHHhC
Confidence 4455555 677899999999999998875
No 60
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=30.72 E-value=70 Score=21.43 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy17729 70 RNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 70 ~GII~~eea~~Il~~L~~l~~~ 91 (127)
..+|++++|+++++.|+++...
T Consensus 57 i~~ideeeA~etl~~l~el~~~ 78 (82)
T PRK10413 57 MSIIDEDEAKATLDALRQMEYD 78 (82)
T ss_pred hhhCCHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999754
No 61
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=28.96 E-value=97 Score=22.41 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy17729 63 HVTMLGERNIIDEQDKELIVKTLKDIE 89 (127)
Q Consensus 63 H~~mL~~~GII~~eea~~Il~~L~~l~ 89 (127)
-+..+.++|+|+++++..|++..+.+.
T Consensus 89 tl~~a~~~g~i~~~~~~~l~~~ak~l~ 115 (120)
T PF07812_consen 89 TLRAAVRAGIISEEEAAALLAAAKSLY 115 (120)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence 344568899999999999998877663
No 62
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=28.86 E-value=1.4e+02 Score=19.59 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy17729 72 IIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 72 II~~eea~~Il~~L~~l~~~ 91 (127)
++++++-+++.+-|+++.+.
T Consensus 8 ~v~~~d~~~i~~rLd~iEeK 27 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEK 27 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999876
No 63
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=28.49 E-value=1.3e+02 Score=18.39 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=13.6
Q ss_pred HHhhcCCCCHHHHHHHHH
Q psy17729 66 MLGERNIIDEQDKELIVK 83 (127)
Q Consensus 66 mL~~~GII~~eea~~Il~ 83 (127)
-..+.|++|+++...|++
T Consensus 31 ~v~~~g~lt~ee~d~ll~ 48 (55)
T PF10415_consen 31 VVLEEGLLTEEELDELLD 48 (55)
T ss_dssp HHHHTTSS-HHHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHcC
Confidence 345789999999998875
No 64
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=28.30 E-value=1.6e+02 Score=18.89 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=32.9
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHH----HHHHHHHHHHhcCCcccCCCCcchhHHHH
Q psy17729 60 SIAHVTMLGERNIIDEQDKELIV----KTLKDIEYDIEHGKVELKVELEDIHMNIE 111 (127)
Q Consensus 60 ~~AH~~mL~~~GII~~eea~~Il----~~L~~l~~~~~~g~~~~~~~~EDih~~iE 111 (127)
-++.++.|.++|.||-..|+.|. ..+.++... .| +.++-+.||+-.-+|
T Consensus 22 r~~~Ai~lY~~g~iS~gkAAelag~s~~eF~~~L~~--~g-I~~~~~~eel~~dle 74 (76)
T PF03683_consen 22 REELAIKLYEEGKISLGKAAELAGMSRWEFLELLKE--RG-IPINYDEEELEEDLE 74 (76)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHH--CC-CCCCCCHHHHHHHHH
Confidence 34778999999999999999996 334444443 23 445555566654444
No 65
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.21 E-value=97 Score=18.22 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=16.6
Q ss_pred hcHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy17729 59 GSIAHVTMLGERNIIDEQDKELIVKTL 85 (127)
Q Consensus 59 ~~~AH~~mL~~~GII~~eea~~Il~~L 85 (127)
|++.=.....++|+|+ +++.++..|
T Consensus 4 GTlGiL~~Ak~~GlI~--~~~~~l~~l 28 (48)
T PF11848_consen 4 GTLGILLLAKRRGLIS--EVKPLLDRL 28 (48)
T ss_pred ehHHHHHHHHHcCChh--hHHHHHHHH
Confidence 4455566778999999 555554444
No 66
>PF09317 DUF1974: Domain of unknown function (DUF1974); InterPro: IPR015396 This C-terminal domain is functionally uncharacterised and is predominantly found in various prokaryotic acyl-coenzyme a dehydrogenases. ; GO: 0003995 acyl-CoA dehydrogenase activity, 0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase, 0055114 oxidation-reduction process
Probab=28.05 E-value=1.4e+02 Score=24.58 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy17729 61 IAHVTMLGERNIIDEQDKELIVKTLKDIEYDI 92 (127)
Q Consensus 61 ~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~ 92 (127)
...+..-.++||||++|+..|.++-+...+.|
T Consensus 248 ~~~~~~A~~~gvIt~~Ea~~l~~a~~~r~~~I 279 (284)
T PF09317_consen 248 EEQIDEALEKGVITAEEAELLREAEELRDDVI 279 (284)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhHhh
Confidence 35667778999999999999988877666543
No 67
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=27.42 E-value=1.9e+02 Score=19.18 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy17729 71 NIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 71 GII~~eea~~Il~~L~~l~~~ 91 (127)
=++++++-+++.+-|++|.+.
T Consensus 10 v~v~~~dfne~~kRLdeieek 30 (75)
T COG4064 10 VVVDPDDFNEIHKRLDEIEEK 30 (75)
T ss_pred cccCHHHHHHHHHHHHHHHHH
Confidence 367999999999999999876
No 68
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=26.43 E-value=71 Score=18.48 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=12.9
Q ss_pred hhcCCCCHHHHHHHHHH
Q psy17729 68 GERNIIDEQDKELIVKT 84 (127)
Q Consensus 68 ~~~GII~~eea~~Il~~ 84 (127)
.++|+|+++-+..|+++
T Consensus 28 ~~~glId~~~~~~L~e~ 44 (45)
T PF00681_consen 28 IQRGLIDSDTAQKLLEA 44 (45)
T ss_dssp HHTTSS-HHHHHHHHHH
T ss_pred HHCCCcCHHHHHHHHcC
Confidence 57899999999888753
No 69
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=25.41 E-value=1e+02 Score=20.65 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy17729 69 ERNIIDEQDKELIVKTLKDIEYDIEH 94 (127)
Q Consensus 69 ~~GII~~eea~~Il~~L~~l~~~~~~ 94 (127)
.+=++|+..|++|+.+|.+-...|+.
T Consensus 60 sRVimsP~~AKrL~~aL~~~l~~YE~ 85 (92)
T PF11950_consen 60 SRVIMSPQHAKRLLKALQQNLQKYEQ 85 (92)
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 33467999999999999999887653
No 70
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=24.74 E-value=1.3e+02 Score=17.96 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHH
Q psy17729 67 LGERNIIDEQDKELIVKTLKDIE 89 (127)
Q Consensus 67 L~~~GII~~eea~~Il~~L~~l~ 89 (127)
|.+-||-.....++|++++++++
T Consensus 42 L~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 42 LEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp HHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHhC
Confidence 77789999999999999998874
No 71
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=24.18 E-value=1.4e+02 Score=20.03 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=21.2
Q ss_pred HhhhhcHHHHHHHhhcCCCCHHHHHHHH
Q psy17729 55 EDIAGSIAHVTMLGERNIIDEQDKELIV 82 (127)
Q Consensus 55 ~di~~~~AH~~mL~~~GII~~eea~~Il 82 (127)
.++.++. |.--|..+||+|.++...|.
T Consensus 14 ~~L~~~~-l~d~L~s~~ILt~~d~EeI~ 40 (84)
T cd08810 14 DKIIADR-HFDYLRSKRILTRDDCEEIS 40 (84)
T ss_pred HHhcHHH-HHHHHHHcCCCCHHHHHHHh
Confidence 3445555 77789999999999999885
No 72
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.00 E-value=78 Score=26.07 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=33.7
Q ss_pred hhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchh
Q psy17729 58 AGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIH 107 (127)
Q Consensus 58 ~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih 107 (127)
....--..-|.+.|||+++.|..|.+-|+.=... |.-.+-|+.|.|-
T Consensus 82 kA~R~f~~fl~~rgiise~~Ae~lrk~lk~k~~~---g~dlyIp~de~ir 128 (291)
T COG4342 82 KAYRLFIKFLTSRGIISEEFAEKLRKPLKVKKSN---GVDLYIPSDEEIR 128 (291)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHhccCcCC---CcceecCCHHHHH
Confidence 3444556788999999999999998887654332 3334667777776
No 73
>PF10904 DUF2694: Protein of unknown function (DUF2694); InterPro: IPR024426 This family of proteins with unknown function appears to be restricted to Mycobacterium spp.
Probab=23.83 E-value=1.8e+02 Score=20.43 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCcc---cCCCCcchhHHHHHHHHHHh
Q psy17729 82 VKTLKDIEYDIEHGKVE---LKVELEDIHMNIESELIRRI 118 (127)
Q Consensus 82 l~~L~~l~~~~~~g~~~---~~~~~EDih~~iE~~L~e~i 118 (127)
++++.+|+.++...... --|...|+|-++|+.|.-+.
T Consensus 57 Lra~levR~eivaag~tpsa~vPT~~dL~~a~e~l~~h~l 96 (101)
T PF10904_consen 57 LRAQLEVREEIVAAGHTPSAQVPTEDDLDVAIERLLAHRL 96 (101)
T ss_pred HHHHHHHHHHHHHccCCccccCCChhhHHHHHHHHHHhhh
Confidence 56777787776653322 34778999999999987654
No 74
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=23.69 E-value=1e+02 Score=20.30 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=23.6
Q ss_pred hcHHHHHHHhhcCCCCHHHHHHH--HHHHHHHHHH
Q psy17729 59 GSIAHVTMLGERNIIDEQDKELI--VKTLKDIEYD 91 (127)
Q Consensus 59 ~~~AH~~mL~~~GII~~eea~~I--l~~L~~l~~~ 91 (127)
....+..+|.+.||-|.++.+.+ .++..+|...
T Consensus 11 ig~~~e~~L~~vGI~t~~~L~~~Ga~~a~~~Lk~~ 45 (81)
T PF04994_consen 11 IGPKSERMLAKVGIHTVEDLRELGAVEAYLRLKAS 45 (81)
T ss_dssp --HHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCHHHHHHhCHHHHHHHHHHH
Confidence 35678899999999999999987 4566666664
No 75
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=23.62 E-value=1.4e+02 Score=17.42 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy17729 65 TMLGERNIIDEQDKELIVKTLKDIEY 90 (127)
Q Consensus 65 ~mL~~~GII~~eea~~Il~~L~~l~~ 90 (127)
..|.+-||-+.....+|++++..++.
T Consensus 42 ~~l~~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 42 EDLKELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence 34788899999999999999998864
No 76
>PF06883 RNA_pol_Rpa2_4: RNA polymerase I, Rpa2 specific domain ; InterPro: IPR009674 This domain is found between domain 3 and domain 5, but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=23.08 E-value=1.5e+02 Score=18.52 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy17729 71 NIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 71 GII~~eea~~Il~~L~~l~~~ 91 (127)
|.++++.|..+.+.|..+.-.
T Consensus 2 G~~~~~~a~~~~~~LR~~Kv~ 22 (58)
T PF06883_consen 2 GYVSPEEAEQIADQLRYLKVE 22 (58)
T ss_pred ceecHHHHHHHHHHHHHHHHc
Confidence 789999999999999998776
No 77
>PF08335 GlnD_UR_UTase: GlnD PII-uridylyltransferase; InterPro: IPR013546 This entry represents a region found in a family of nucleotide transferases that includes bifunctional uridylyl-removing enzymes/uridylyltransferases (UR/UTases, GlnD; 2.7.7.59 from EC) and glutamine-synthetase adenylyltransferases (GlnE; 2.7.7.42 from EC). The region described in this family is found in many of its members to be C-terminal to a nucleotidyltransferase domain, and N-terminal to an HD domain and two ACT domains []. Bifunctional uridylyl-removing enzymes/uridylyltransferases are responsible for the modification of the regulatory protein PII, or GlnB, thereby acting as the sensory component of the nitrogen regulation (ntr) system []. The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. In response to nitrogen limitation, these transferases catalyse the uridylylation of the PII protein, which in turn stimulates deadenylylation of glutamine synthetase (GlnA), leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters []. Uridylylated PII can act together with NtrB and NtrC to increase transcription of genes in the sigma54 regulon, which include glnA and other nitrogen-level controlled genes []. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters []. It has also been suggested that the product of the glnD gene is involved in other physiological functions such as control of iron metabolism in certain species []. Glutamine-synthetase adenylyltransferase is an adenylyl transferase comprised of an adenylylating domain and a deadenylylating domain which modulate glutamine synthetase (GS) activity, where GS plays an important role in nitrogen assimilation [].; GO: 0016779 nucleotidyltransferase activity; PDB: 3K7D_A 1V4A_A.
Probab=21.67 E-value=1.8e+02 Score=20.56 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=23.0
Q ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy17729 60 SIAHVTMLGERNIIDEQDKELIVKTLKDIE 89 (127)
Q Consensus 60 ~~AH~~mL~~~GII~~eea~~Il~~L~~l~ 89 (127)
...-...|.+.|+|+++++..+..+-.-+.
T Consensus 54 t~~~l~~l~~~g~l~~~~~~~L~~ay~fl~ 83 (142)
T PF08335_consen 54 TIDALEALAAAGLLSEEEAEALREAYRFLR 83 (142)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445567899999999999999988865544
No 78
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.10 E-value=2.2e+02 Score=21.18 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy17729 61 IAHVTMLGERNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 61 ~AH~~mL~~~GII~~eea~~Il~~L~~l~~~ 91 (127)
.+-+..|.++| +|++.|..|..++..+...
T Consensus 5 ~~~v~~Le~~G-ft~~QAe~i~~~l~~~l~~ 34 (177)
T PF07798_consen 5 HKFVKRLEAAG-FTEEQAEAIMKALREVLND 34 (177)
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
Confidence 35678898888 5999999999998888764
No 79
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=21.00 E-value=2.3e+02 Score=21.88 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=30.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccc
Q psy17729 64 VTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVEL 99 (127)
Q Consensus 64 ~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~ 99 (127)
..|--+.|+||++.+.+-.+....|..+++.|.|.+
T Consensus 128 L~~Al~~GlIT~~qf~~Ay~~a~aVe~elr~g~~~~ 163 (183)
T COG2306 128 LEDALRYGLITPEQFEKAYRTANAVEAELRNGKFPP 163 (183)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 445678899999999998889999999988887654
No 80
>PRK13662 hypothetical protein; Provisional
Probab=20.97 E-value=1.9e+02 Score=22.10 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHH
Q psy17729 70 RNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESEL 114 (127)
Q Consensus 70 ~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L 114 (127)
++--|++....+.++++.|...+..++++|++++=|+. .|++|
T Consensus 130 ~~~Yp~~~~~~v~~~~~~l~~~i~~~~~PF~~~~i~~~--~~~~~ 172 (177)
T PRK13662 130 QMNYPPDIDRILKENVKILVDWINQKKGPFSPDFVDIW--YERYL 172 (177)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHH--HHHHH
Confidence 55668899999999999999999999999998765543 36664
No 81
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=20.94 E-value=1.2e+02 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy17729 65 TMLGERNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 65 ~mL~~~GII~~eea~~Il~~L~~l~~~ 91 (127)
.-|.+.|++|+++.++|.+..++.-++
T Consensus 295 ~~L~~~g~~see~~~~i~~e~~~~V~e 321 (358)
T COG1071 295 KYLIEAGILSEEELEAIEAEAKAEVDE 321 (358)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999887766554
No 82
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=20.60 E-value=1.8e+02 Score=20.82 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHH-HHHHHHHHhcCC
Q psy17729 50 EVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT-LKDIEYDIEHGK 96 (127)
Q Consensus 50 ~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~-L~~l~~~~~~g~ 96 (127)
+.||-+.-..+--=.++|.++|++++++-.+.+.. +..+.. .+|.
T Consensus 38 ~~LWv~EG~T~Y~~~l~l~RaGl~~~~~yl~~L~~~~~~~~~--~pGr 83 (122)
T PF05299_consen 38 ELLWVYEGFTSYYGDLLLVRAGLISPEEYLEELAKTIARYEN--TPGR 83 (122)
T ss_pred CCEeeeeCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc--CCCc
Confidence 44444444444444569999999999998876655 555544 4554
No 83
>COG2445 Uncharacterized conserved protein [Function unknown]
Probab=20.35 E-value=1.2e+02 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred HHHHhhcCCCCHHHHHHHH--HHHHHHHH
Q psy17729 64 VTMLGERNIIDEQDKELIV--KTLKDIEY 90 (127)
Q Consensus 64 ~~mL~~~GII~~eea~~Il--~~L~~l~~ 90 (127)
...|.+.|||+++++..+. .+|.++.-
T Consensus 71 ~~~L~~~gvi~~e~~e~L~~~~gfRN~lV 99 (138)
T COG2445 71 IDILVEEGVIPEEEAEELKKMVGFRNILV 99 (138)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578899999999988874 45666544
No 84
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=20.34 E-value=1.7e+02 Score=20.36 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=27.6
Q ss_pred hhhcHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHH
Q psy17729 57 IAGSIAHVTMLGERNI-IDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 57 i~~~~AH~~mL~~~GI-I~~eea~~Il~~L~~l~~~ 91 (127)
+..|.==..-|.++|| +++++..+|..+..+....
T Consensus 15 lkfSkHA~~RL~~R~I~l~~~~~~~i~~av~~A~~K 50 (96)
T TIGR02530 15 LKLSKHALERMRERNISINPDDWKKLLEAVEEAESK 50 (96)
T ss_pred eeEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhc
Confidence 4444433346899999 9999999999999998775
No 85
>KOG3520|consensus
Probab=20.05 E-value=4.3e+02 Score=26.15 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=30.3
Q ss_pred HHHHHhhhhcHHHHHHH-----------hhcCCCCHHHHHHHHHHHHHHHH
Q psy17729 51 VLYREDIAGSIAHVTML-----------GERNIIDEQDKELIVKTLKDIEY 90 (127)
Q Consensus 51 ~l~~~di~~~~AH~~mL-----------~~~GII~~eea~~Il~~L~~l~~ 90 (127)
+.....+..-.+||.+| .+.+++++++...|-..|++|..
T Consensus 393 EvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e~~~~~~~l~~LFP~LdeL~e 443 (1167)
T KOG3520|consen 393 EVIYELFQTERHHVRTLKILDRVFYQPMMEELLFPQEELNKLFPCLDELIE 443 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhcccHHHHHH
Confidence 33344466778888886 68899999999999887777744
No 86
>PF11630 DUF3254: Protein of unknown function (DUF3254); InterPro: IPR024509 Anti-lipopolysaccharide factor binds to bacterial LPS and may specifically inhibit the LPS-mediated activation of the hemolymph coagulation. It has a strong antibacterial effect, especially on the growth of Gram-negative bacteria [,]. This entry also includes the antibacterial protein Scygonadin, which has antibacterial activity against the Gram-positive bacterium Micrococcus luteus [].; PDB: 2JOB_A.
Probab=20.00 E-value=78 Score=22.23 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=11.9
Q ss_pred HHhhcCCCCHHHHHHHHH
Q psy17729 66 MLGERNIIDEQDKELIVK 83 (127)
Q Consensus 66 mL~~~GII~~eea~~Il~ 83 (127)
--..+||||++||..-++
T Consensus 83 kA~~~gLiT~eeA~~wL~ 100 (100)
T PF11630_consen 83 KAFQAGLITEEEAQPWLN 100 (100)
T ss_dssp HHHHHT-S-HHHHHHHHH
T ss_pred HHHHcCCccHHHHHHhhC
Confidence 345689999999987653
Done!