Query psy17729
Match_columns 127
No_of_seqs 112 out of 1047
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:29:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 99.8 3.6E-21 1.2E-25 162.2 10.4 103 25-127 2-105 (457)
2 2e9f_A Argininosuccinate lyase 99.8 1.9E-20 6.3E-25 158.1 7.8 103 25-127 4-106 (462)
3 1k7w_A Delta 2 crystallin; eye 99.8 2.6E-19 9E-24 151.2 10.4 105 23-127 7-111 (468)
4 1fur_A Fumarase C, FUMC; hydro 99.5 2.4E-14 8.4E-19 121.0 4.7 99 24-126 19-129 (467)
5 1vdk_A Fumarase C, fumarate hy 99.5 7.5E-14 2.6E-18 117.9 6.8 98 25-126 19-129 (466)
6 1jsw_A L-aspartase, L-aspartat 99.4 1.3E-13 4.5E-18 116.7 4.4 99 25-127 21-134 (478)
7 1yfm_A Fumarase, YFUM; lyase, 99.3 1.1E-12 3.6E-17 111.7 5.1 98 25-126 44-154 (488)
8 2qga_B Adenylosuccinate lyase; 99.3 2.9E-13 9.8E-18 114.2 -1.1 96 25-127 9-118 (465)
9 3bhg_A Adenylosuccinate lyase; 99.2 3E-12 1E-16 107.8 3.3 93 25-127 13-122 (459)
10 4adm_A Fumarase C, fumarate hy 99.2 3.1E-11 1.1E-15 102.9 6.2 97 25-127 48-151 (495)
11 1q5n_A 3-carboxy-CIS,CIS-mucon 99.1 4.2E-11 1.4E-15 100.6 4.5 95 25-127 6-106 (454)
12 3c8t_A Fumarate lyase; structu 99.1 6.5E-10 2.2E-14 93.3 9.8 92 25-127 6-100 (451)
13 2ptr_A Adenylosuccinate lyase; 99.0 1E-10 3.5E-15 98.6 2.2 93 25-127 10-119 (462)
14 3r6q_A Aspartase; aspartate am 98.8 1.1E-08 3.9E-13 86.5 7.4 90 38-127 30-131 (468)
15 1dof_A Adenylosuccinate lyase; 98.8 4.8E-09 1.6E-13 87.0 4.5 85 26-127 5-92 (403)
16 1yis_A Adenylosuccinate lyase; 98.7 3.1E-09 1E-13 89.8 2.9 94 25-127 9-104 (478)
17 1c3c_A Protein (adenylosuccina 98.7 2.3E-08 7.9E-13 83.3 7.4 71 49-127 15-89 (429)
18 2pfm_A Adenylosuccinate lyase; 98.7 2.9E-08 1E-12 83.2 6.9 77 43-127 19-101 (444)
19 2j91_A Adenylosuccinate lyase; 98.6 1.2E-08 3.9E-13 87.0 2.2 93 25-127 37-130 (503)
20 1re5_A 3-carboxy-CIS,CIS-mucon 98.5 1.3E-07 4.5E-12 79.2 7.2 72 48-127 20-102 (450)
21 3ocf_A Fumarate lyase:delta cr 98.5 2.6E-07 8.9E-12 78.5 7.9 89 38-126 48-150 (478)
22 2fel_A 3-carboxy-CIS,CIS-mucon 98.4 4.3E-08 1.5E-12 80.3 0.4 95 25-127 9-104 (359)
23 4eei_A Adenylosuccinate lyase; 98.3 1.6E-06 5.6E-11 72.6 7.0 70 49-127 16-90 (438)
24 3e04_A Fumarase, fumarate hydr 98.2 3.4E-06 1.1E-10 71.9 7.5 89 38-127 55-157 (490)
25 3gtd_A Fumarase C, fumarate hy 98.1 9.1E-06 3.1E-10 69.1 8.0 90 38-127 50-151 (482)
26 4hgv_A Fumarase C, fumarate hy 84.9 3.1 0.0001 35.1 7.6 83 38-120 61-152 (495)
27 3exm_A Phosphatase SC4828; nuc 68.9 4.8 0.00016 31.1 3.9 37 69-105 176-212 (237)
28 2odm_A YLAN, UPF0358 protein M 63.8 14 0.00048 24.5 4.8 39 48-91 45-83 (91)
29 2gbo_A UPF0358 protein EF2458; 58.6 17 0.00058 24.7 4.6 39 48-91 47-85 (104)
30 3t98_B Nucleoporin NUP58/NUP45 42.9 26 0.00088 23.1 3.5 73 34-113 5-77 (93)
31 3bqs_A Uncharacterized protein 34.2 95 0.0033 20.1 5.7 49 59-114 12-62 (93)
32 3anw_B GINS23, putative unchar 31.2 74 0.0025 23.2 4.7 53 64-117 39-92 (171)
33 3eq5_A SKI-like protein; TGF-b 23.2 27 0.00092 24.4 1.0 30 57-86 82-121 (125)
34 3icf_A PPT, serine/threonine-p 22.8 65 0.0022 25.6 3.3 53 66-119 24-87 (335)
35 3fxd_A Protein ICMQ; helix bun 22.7 89 0.003 18.9 3.1 20 72-91 4-23 (57)
36 2z1c_A Hydrogenase expression/ 22.7 58 0.002 20.5 2.5 20 71-90 51-70 (75)
37 4gof_A Small glutamine-rich te 22.5 1.2E+02 0.0041 17.8 3.7 32 68-104 17-48 (52)
38 2zzd_B Thiocyanate hydrolase s 21.9 2.1E+02 0.0072 20.5 5.6 30 62-91 115-144 (157)
39 2d3d_A VTS1 protein; RNA bindi 21.0 1.7E+02 0.0058 18.9 4.5 32 66-97 52-83 (88)
40 2gle_A Neurabin-1; SAM domain, 20.5 97 0.0033 18.4 3.2 26 67-92 46-71 (74)
41 3d3r_A Hydrogenase assembly ch 20.5 69 0.0024 21.5 2.6 21 71-91 75-95 (103)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=99.85 E-value=3.6e-21 Score=162.24 Aligned_cols=103 Identities=31% Similarity=0.547 Sum_probs=98.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC-CCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VEL 103 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~-~~~ 103 (127)
++|+|||++.+++.+..|+.|+.+|++++++||.+++||+.||.++|+||++++.+|.+++.++..++..+.|.++ +..
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 81 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDA 81 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCC
T ss_pred cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999888778888887 889
Q ss_pred cchhHHHHHHHHHHhChhhcccCC
Q psy17729 104 EDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 104 EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
+|+|+++|++|++++|+.|+++|+
T Consensus 82 ~dv~~~v~~~l~e~~g~~g~~vH~ 105 (457)
T 1tj7_A 82 EDIHSWVEGKLIDKVGQLGKKLHT 105 (457)
T ss_dssp SSHHHHHHHHHHHHHGGGGGGTTT
T ss_pred CcHHHHHHHHHHHHccccccceec
Confidence 999999999999999999999996
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=99.81 E-value=1.9e-20 Score=158.08 Aligned_cols=103 Identities=37% Similarity=0.627 Sum_probs=90.0
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E 104 (127)
++|+|||++.++..+.+|+.|+.+|++++++++.+++||+.||.+.|+||++++.+|.+++.+|..++..+.|.+++..+
T Consensus 4 ~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~~~ 83 (462)
T 2e9f_A 4 RTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREELE 83 (462)
T ss_dssp ----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCCCGGGC
T ss_pred cccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999887888899999999
Q ss_pred chhHHHHHHHHHHhChhhcccCC
Q psy17729 105 DIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 105 Dih~~iE~~L~e~iG~~gg~LHT 127 (127)
|+|+++|++|++++|+.|+++|+
T Consensus 84 dv~~~~~~~l~e~~g~~g~~vH~ 106 (462)
T 2e9f_A 84 DVHMNLEARLTELVGPPGGKLHT 106 (462)
T ss_dssp SHHHHHHHHHHHHHCTTHHHHTT
T ss_pred chHHHHHHHHHHHccccccceec
Confidence 99999999999999999999996
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=99.79 E-value=2.6e-19 Score=151.25 Aligned_cols=105 Identities=33% Similarity=0.486 Sum_probs=90.1
Q ss_pred hhhhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q psy17729 23 LKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE 102 (127)
Q Consensus 23 m~~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~ 102 (127)
+.++|+|||++.++..+..|+.|+.+|.+++++++.+.+||+.||.+.|+||++++.+|.+++.+|..++..+.|.+++.
T Consensus 7 ~~~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~ 86 (468)
T 1k7w_A 7 GDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQS 86 (468)
T ss_dssp ------------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTT
T ss_pred cccccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcccCccCCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999998878888999999
Q ss_pred CcchhHHHHHHHHHHhChhhcccCC
Q psy17729 103 LEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 103 ~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
.+|+|+++|++|++++|+.|+++|+
T Consensus 87 ~~dv~m~~~~~l~e~~g~~g~~vH~ 111 (468)
T 1k7w_A 87 DEDIHTANERRLKELIGDIAGKLHT 111 (468)
T ss_dssp CCSHHHHHHHHHHHHHCGGGGGGGT
T ss_pred CCchHHHHHHHHHHHccccccceec
Confidence 9999999999999999999999996
No 4
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=99.47 E-value=2.4e-14 Score=120.99 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=89.1
Q ss_pred hhhhhccCCCchHHHHHHHhhCHHH-HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC-
Q psy17729 24 KQLWTGCFQQSMNEFLQQFNESISV-DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV- 101 (127)
Q Consensus 24 ~~lw~gR~~~~~~~~~~~~~~s~~~-D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~- 101 (127)
.++|++ .+...+.+|+.|..+ |..++++++.+.+||+.||.++|+||++++.+|.+++++|.+....+.|.+++
T Consensus 19 ~~~~g~----~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~ 94 (467)
T 1fur_A 19 DKLWGA----QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIW 94 (467)
T ss_dssp TCCCCH----HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBSS
T ss_pred ccccch----hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccccccchhh
Confidence 368997 788899999999888 99999999999999999999999999999999999999998865566777776
Q ss_pred ---CCcchhHHHHHHH----HHHhC-hhhcc--cC
Q psy17729 102 ---ELEDIHMNIESEL----IRRIG-NVGRK--LH 126 (127)
Q Consensus 102 ---~~EDih~~iE~~L----~e~iG-~~gg~--LH 126 (127)
+.+|+|+++|..+ ++++| +.|+| +|
T Consensus 95 q~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lH 129 (467)
T 1fur_A 95 QTGSGTQSNMNMNEVLANRASELLGGVRGMERKVH 129 (467)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSC
T ss_pred hccccccccccHHHHHHHHHHHHhCcccccccccC
Confidence 6799999999966 89999 78888 88
No 5
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=99.45 E-value=7.5e-14 Score=117.94 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=89.0
Q ss_pred hhhhccCCCchHHHHHHHhhCHH-H--HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESIS-V--DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~-~--D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~ 101 (127)
++|++ .+...+.+|+.|.. + |..++++++.+.+||+.||.++|+||++++.+|.+++.+|......+.|.+++
T Consensus 19 ~~~g~----~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~ 94 (466)
T 1vdk_A 19 KYWGA----QTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVV 94 (466)
T ss_dssp CCCCH----HHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBS
T ss_pred cccch----hhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCCchh
Confidence 68987 78889999998866 6 89999999999999999999999999999999999999998875667788887
Q ss_pred ----CCcchhHHHHHHH----HHHhC-hhh-cccC
Q psy17729 102 ----ELEDIHMNIESEL----IRRIG-NVG-RKLH 126 (127)
Q Consensus 102 ----~~EDih~~iE~~L----~e~iG-~~g-g~LH 126 (127)
+.+|+|+++|..+ ++++| +.| +++|
T Consensus 95 ~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~lH 129 (466)
T 1vdk_A 95 FQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAH 129 (466)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCSSC
T ss_pred hhccccccccccHHHHHHHHHHHHhCccccccccc
Confidence 7899999999977 99999 688 9999
No 6
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=99.40 E-value=1.3e-13 Score=116.73 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=87.1
Q ss_pred hhhhccCCCchHHHHHHHhhCH-HH--HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-HHHhcCCcccC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESI-SV--DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIE-YDIEHGKVELK 100 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~-~~--D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~-~~~~~g~~~~~ 100 (127)
++|+++ ....+..|+.|. .+ |..++++++.+.+||+.||.++|+||++++.+|.+++++|. +....+.|.++
T Consensus 21 ~~~g~~----t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~f~v~ 96 (478)
T 1jsw_A 21 AYYGVH----TLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVD 96 (478)
T ss_dssp CCCCHH----HHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHSTTTCSTTCCCCC
T ss_pred cccchH----HHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcchhccCCccc
Confidence 689873 778899999874 56 89999999999999999999999999999999999999998 76566778888
Q ss_pred C----CCcchhHHHHH----HHHHHhC-hhhc--ccCC
Q psy17729 101 V----ELEDIHMNIES----ELIRRIG-NVGR--KLHT 127 (127)
Q Consensus 101 ~----~~EDih~~iE~----~L~e~iG-~~gg--~LHT 127 (127)
+ +.||+|+++|. ++++++| +.|+ ++|+
T Consensus 97 ~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHp 134 (478)
T 1jsw_A 97 VYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNP 134 (478)
T ss_dssp SSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCC
T ss_pred hhhccCcccccccHHHHHHHHHHHHcCccccccccccc
Confidence 8 89999999996 8889999 4776 8993
No 7
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=99.31 E-value=1.1e-12 Score=111.70 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=82.1
Q ss_pred hhhhccCCCchHHHHHHHhhCHH---HHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESIS---VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV 101 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~---~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~ 101 (127)
++||+ .+...+.+|+.|.. +|..++++++.+.+||+.|+.+.|+|+++++.+|.+++++|......+.|.+++
T Consensus 44 ~~~g~----~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~ 119 (488)
T 1yfm_A 44 KYWGA----QTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVV 119 (488)
T ss_dssp CCCCH----HHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBS
T ss_pred chhch----HHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCCcch
Confidence 68987 77889999999887 589999999999999999999999999999999999999999865566788887
Q ss_pred ----CCcchhHHHHHHH----HHHhC-hhh-cccC
Q psy17729 102 ----ELEDIHMNIESEL----IRRIG-NVG-RKLH 126 (127)
Q Consensus 102 ----~~EDih~~iE~~L----~e~iG-~~g-g~LH 126 (127)
+.+|+|+++|..+ ++++| +.| +++|
T Consensus 120 ~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~vH 154 (488)
T 1yfm_A 120 FQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVH 154 (488)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHHC---------CC
T ss_pred hhccccccccccHHHHHHHHHHHHhCccccCCccC
Confidence 7899999999976 58899 678 9999
No 8
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=99.27 E-value=2.9e-13 Score=114.21 Aligned_cols=96 Identities=13% Similarity=0.234 Sum_probs=75.4
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhcCCcc-----
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NIIDEQDKELIVKTLKDIEYDIEHGKVE----- 98 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~-GII~~eea~~Il~~L~~l~~~~~~g~~~----- 98 (127)
.+|+|||++++++. .++-.|..++++++.+++||+.||.++ ||||++++.+|. +|.++..++..+.+.
T Consensus 9 s~~~gRy~~~~~~~-----~~~~sd~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~-~l~~~~~~~~~~d~~~i~~~ 82 (465)
T 2qga_B 9 SPIDGRYKKACGEL-----SAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVE-VLNQIATNITDSDIARVKAI 82 (465)
T ss_dssp STTTTTTHHHHGGG-----GGTSSHHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHH-HHHHHHHCCCHHHHHHHHHH
T ss_pred CcccccccCCcHHH-----HHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHHHhhccccHHHHHHH
Confidence 47999999876663 223358999999999999999999999 999999999887 466554443222221
Q ss_pred cCCCCcchhHHHHHHHHHHhC--------hhhcccCC
Q psy17729 99 LKVELEDIHMNIESELIRRIG--------NVGRKLHT 127 (127)
Q Consensus 99 ~~~~~EDih~~iE~~L~e~iG--------~~gg~LHT 127 (127)
.....+|| +++|.+|++++| ++|+++|+
T Consensus 83 e~~~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~ 118 (465)
T 2qga_B 83 EEETNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHY 118 (465)
T ss_dssp HHHHSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTT
T ss_pred hhccCCCh-HHHHHHHHHHhcccccccchhhhhhccC
Confidence 23368999 999999999998 68999996
No 9
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=99.23 E-value=3e-12 Score=107.82 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=76.6
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhc-CC-----CCHHHHHHHHHHHHHHHHHHhcCCcc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI-----IDEQDKELIVKTLKDIEYDIEHGKVE 98 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~-GI-----I~~eea~~Il~~L~~l~~~~~~g~~~ 98 (127)
.+|+|||++++++....|+ |.+++++++.+++||+.||.++ || ||++++.+|.+++.++.. +.+.
T Consensus 13 s~~~gRy~~~~~~~~~~fs-----d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~----~d~~ 83 (459)
T 3bhg_A 13 SPIDGRYVNKTRALSPYFS-----EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNE----SEAE 83 (459)
T ss_dssp STTTTTTHHHHGGGTTTSS-----HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCH----HHHH
T ss_pred CcccccccCChHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhcc----ccHH
Confidence 5799999987666666665 8999999999999999999999 88 569999999999876522 1111
Q ss_pred -----cCCCCcchhHHHHHHHHHHhC------hhhcccCC
Q psy17729 99 -----LKVELEDIHMNIESELIRRIG------NVGRKLHT 127 (127)
Q Consensus 99 -----~~~~~EDih~~iE~~L~e~iG------~~gg~LHT 127 (127)
.....+|| .++|.+|++++| ++|+++|+
T Consensus 84 ~~~~~e~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~ 122 (459)
T 3bhg_A 84 KIKEFEKQTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHF 122 (459)
T ss_dssp HHHHHTTTCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTT
T ss_pred HHHHHHHhcCCCh-HHHHHHHHHHhcccccCchhhhhhcC
Confidence 25668999 999999999998 36899996
No 10
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=99.16 E-value=3.1e-11 Score=102.90 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=81.4
Q ss_pred hhhhccCCCchHHHHHHHhhCH-HHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC--
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESI-SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV-- 101 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~-~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~-- 101 (127)
++||+ .....+++|+.|. .++..+.+....+.+||+.|+.+.|+|+++++.+|.+++++|..+...+.|.+++
T Consensus 48 ~~~G~----~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~~q 123 (495)
T 4adm_A 48 ALWRA----QTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQ 123 (495)
T ss_dssp CSCCH----HHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCGGGCCCBSSS
T ss_pred hhcCc----hhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCcccCCCCcchhh
Confidence 79996 6777899998554 2446666667777999999999999999999999999999998876667788776
Q ss_pred --CCcchhHHHHHHHHHHh--ChhhcccCC
Q psy17729 102 --ELEDIHMNIESELIRRI--GNVGRKLHT 127 (127)
Q Consensus 102 --~~EDih~~iE~~L~e~i--G~~gg~LHT 127 (127)
..+|+|+++|..+..++ | |+++|+
T Consensus 124 ~g~gt~~nmnvnevia~ra~lG--G~~vH~ 151 (495)
T 4adm_A 124 TGSGTSSNMNTNEVIASIAAKG--GVTLHP 151 (495)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHT--TCCCCT
T ss_pred ccccccccccHHHHHHHHHHhC--CCccCc
Confidence 56999999999999955 8 788995
No 11
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=99.10 E-value=4.2e-11 Score=100.56 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=75.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc--cCCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVE--LKVE 102 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~--~~~~ 102 (127)
.+|+|||..+ .+..+- -|..++++++.+.+||+.||.++|+||++++.+|.+++.+|...+..+.+. ....
T Consensus 6 ~~~~~ry~~~---~~~~~~----sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~ 78 (454)
T 1q5n_A 6 QLYASLFYQR---DVTEIF----SDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLA 78 (454)
T ss_dssp CTTHHHHSCH---HHHHHT----SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCHHHHHHHHHHH
T ss_pred CccccccCcH---HHHHHc----CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHhhcc
Confidence 5899999972 444432 378899999999999999999999999999999999998665442211111 2236
Q ss_pred CcchhHHHHHHHHHHh----ChhhcccCC
Q psy17729 103 LEDIHMNIESELIRRI----GNVGRKLHT 127 (127)
Q Consensus 103 ~EDih~~iE~~L~e~i----G~~gg~LHT 127 (127)
.+|| .++|++|++++ |+.|+++|+
T Consensus 79 ~~dV-ia~~~~l~e~~g~~~g~~~~~vH~ 106 (454)
T 1q5n_A 79 GNIA-IPFVKQLTAIVKDADEDAARYVHW 106 (454)
T ss_dssp SSSH-HHHHHHHHHHHHTTCTTGGGGTTT
T ss_pred CCcH-HHHHHHHHHHhccccCCccccccC
Confidence 7999 68899999999 889999996
No 12
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=99.06 E-value=6.5e-10 Score=93.32 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=71.6
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHH--HH-HHHhcCCcccCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKD--IE-YDIEHGKVELKV 101 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~--l~-~~~~~g~~~~~~ 101 (127)
.+|+|||+.+ .+..+- -|..++++++.+.+||+.||.++|+||++++.+|.+++.+ +. ..+..+ ...
T Consensus 6 ~~~~~ry~~~---~~~~~~----sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~~~~---~~~ 75 (451)
T 3c8t_A 6 PLYGRSFADD---KMRELF----SAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLRDD---TEI 75 (451)
T ss_dssp CCSSCCCSCH---HHHHHT----SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHHHHH---HHH
T ss_pred CccccccCcH---HHHHHc----CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHHHHH---hhc
Confidence 5899999973 444432 3788999999999999999999999999999999999852 11 111111 122
Q ss_pred CCcchhHHHHHHHHHHhChhhcccCC
Q psy17729 102 ELEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 102 ~~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
..+|| .++|+.|++++|+.|+++|+
T Consensus 76 ~~~dV-ia~~~~l~e~~g~~g~~vH~ 100 (451)
T 3c8t_A 76 VGYPI-LPLVEQLSAHAGEAGKYLHW 100 (451)
T ss_dssp HSSSH-HHHHHHHHHHHGGGGGGSSS
T ss_pred CCCcH-HHHHHHHHHHcccccccccC
Confidence 57999 48899999999988999996
No 13
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=98.99 E-value=1e-10 Score=98.57 Aligned_cols=93 Identities=11% Similarity=0.150 Sum_probs=76.2
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhc-CC-----CCHHHHHHHHHHHHHHHHHHhcCCcc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGER-NI-----IDEQDKELIVKTLKDIEYDIEHGKVE 98 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~-GI-----I~~eea~~Il~~L~~l~~~~~~g~~~ 98 (127)
.+|+|||++++++....|+ |++++++++.+.+||+.||.++ || ||++++.+|.+++.++.. |.+.
T Consensus 10 s~~~gRy~~~~~~~~~~fs-----d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~----g~~~ 80 (462)
T 2ptr_A 10 SPVDGRYGDKVSALRGIFS-----EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSE----EDAA 80 (462)
T ss_dssp STTTTTTGGGSGGGGGTTS-----HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCH----HHHH
T ss_pred CcccccccCchHHHHHHCC-----cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhcc----CCHH
Confidence 4799999988777776666 8999999999999999999999 77 359999999999876632 1111
Q ss_pred c-----CCCCcchhHHHHHHHHHHhCh------hhcccCC
Q psy17729 99 L-----KVELEDIHMNIESELIRRIGN------VGRKLHT 127 (127)
Q Consensus 99 ~-----~~~~EDih~~iE~~L~e~iG~------~gg~LHT 127 (127)
. ....+|| .++|+.|++++|+ .++++|+
T Consensus 81 ~~~~~~~~~~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~ 119 (462)
T 2ptr_A 81 RIKTIERTTNHDV-KAVEYFLKEKVAEIPELHAVSEFIHF 119 (462)
T ss_dssp HHHHHHHHHSCHH-HHHHHHHHHHHTTSHHHHTTGGGTTT
T ss_pred HHHhhccccCCCH-HHHHHHHHHHhccccCCcchhhhccC
Confidence 1 3457999 9999999999984 5799996
No 14
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=98.78 E-value=1.1e-08 Score=86.51 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=73.9
Q ss_pred HHHHHh-hCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC----CcchhHHHH-
Q psy17729 38 FLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE----LEDIHMNIE- 111 (127)
Q Consensus 38 ~~~~~~-~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~----~EDih~~iE- 111 (127)
.+.+|. +...++..++++.+.+.+||+.++.++|+||++++.+|.+++++|......+.|.+++- .+|+|++++
T Consensus 30 a~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvne 109 (468)
T 3r6q_A 30 ATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANE 109 (468)
T ss_dssp HHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTGGGCCSCSSCSSTTHHHHHHHHH
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCccccCCCccHHhccccccccccHHH
Confidence 466774 44556789999999999999999999999999999999999999987655677887764 458888876
Q ss_pred ---HHHHHHhChh-hcc--cCC
Q psy17729 112 ---SELIRRIGNV-GRK--LHT 127 (127)
Q Consensus 112 ---~~L~e~iG~~-gg~--LHT 127 (127)
+++++++|+. |++ +||
T Consensus 110 via~~~~e~~G~~~g~y~~vHp 131 (468)
T 3r6q_A 110 VIANRALELMGEEKGNYSKISP 131 (468)
T ss_dssp HHHHHHHHHTTCCTTCTTTSCC
T ss_pred HHHHHHHHHhccccCCcCccCC
Confidence 6788999964 443 995
No 15
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=98.76 E-value=4.8e-09 Score=86.99 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=65.8
Q ss_pred hhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHH---HHHHHHHHhcCCcccCCC
Q psy17729 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT---LKDIEYDIEHGKVELKVE 102 (127)
Q Consensus 26 lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~---L~~l~~~~~~g~~~~~~~ 102 (127)
.|+|||.. +.+ ..+-.|..++++++.+.+||+.||.+.|+||++++.+|.++ +..+... ....
T Consensus 5 p~~~ry~~---~~~----~~i~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~d~~~~~~~-------~~~~ 70 (403)
T 1dof_A 5 PFDWRYGS---EEI----RRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRL-------ERET 70 (403)
T ss_dssp GGGTTSSC---HHH----HTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------------
T ss_pred CcccccCc---HHH----HHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHH-------hhcc
Confidence 48899997 334 33445899999999999999999999999999999999988 3333332 1125
Q ss_pred CcchhHHHHHHHHHHhChhhcccCC
Q psy17729 103 LEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 103 ~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
.+|| .++|+.|++++| |+++|+
T Consensus 71 ~~dV-ia~~~~l~e~~G--g~~vH~ 92 (403)
T 1dof_A 71 GHDI-LSLVLLLEQKSG--CRYVHY 92 (403)
T ss_dssp -CHH-HHHHHHHHHHHC--CSCTTT
T ss_pred CCcH-HHHHHHHHHHcC--CCcccC
Confidence 6899 588999999999 899996
No 16
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=98.75 E-value=3.1e-09 Score=89.80 Aligned_cols=94 Identities=6% Similarity=-0.052 Sum_probs=72.7
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI--IDEQDKELIVKTLKDIEYDIEHGKVELKVE 102 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GI--I~~eea~~Il~~L~~l~~~~~~g~~~~~~~ 102 (127)
..|.+||..+ +.+..+- | |...+...+.+.+||+.++.+.|| ||++++.+|.+++.++..+...+ + ....
T Consensus 9 spl~~ry~~~--~~m~~~f-s---~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~-~-e~~~ 80 (478)
T 1yis_A 9 SVLSTRYCKN--SPLVSIL-S---ETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRS-E-ERKL 80 (478)
T ss_dssp CHHHHTTTTT--CTHHHHT-S---HHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHH-H-HHHS
T ss_pred CCcccccCCh--HHHHHHc-C---chHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhh-H-HHhc
Confidence 4578899864 2144332 2 234677888899999999999999 99999999999987775543222 2 2467
Q ss_pred CcchhHHHHHHHHHHhChhhcccCC
Q psy17729 103 LEDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 103 ~EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
.+|||.++|. |++++|++||++||
T Consensus 81 ~~DV~a~v~~-l~e~~g~~~~~iH~ 104 (478)
T 1yis_A 81 KHDVMAHNHA-FGKLCPTAAGIIHL 104 (478)
T ss_dssp SCHHHHHHHH-HHHHCTTTGGGTTT
T ss_pred CCcHHHHHHH-HHHhhhhchhheeC
Confidence 8999999996 89999999999997
No 17
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=98.72 E-value=2.3e-08 Score=83.33 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=62.8
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHH----HHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChhhcc
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~----L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~gg~ 124 (127)
|..++++++.+.+||+.||.+.|+||++++.+|.++ +..+..... ...+|| .++|++|++++|+.|++
T Consensus 15 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~~~~~-------~~~~dV-ia~~~~l~e~~g~~g~~ 86 (429)
T 1c3c_A 15 EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKKIEE-------KTNHDV-VAFVEGIGSMIGEDSRF 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHHHHHH-------HHCCHH-HHHHHHHHHHHGGGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHHh-------ccCCCh-HHHHHHHHHHcCccccc
Confidence 889999999999999999999999999999999999 577776522 147999 68899999999988999
Q ss_pred cCC
Q psy17729 125 LHT 127 (127)
Q Consensus 125 LHT 127 (127)
+|+
T Consensus 87 vH~ 89 (429)
T 1c3c_A 87 FHY 89 (429)
T ss_dssp TTT
T ss_pred ccC
Confidence 996
No 18
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=98.68 E-value=2.9e-08 Score=83.15 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=65.6
Q ss_pred hhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHH----HHHHHHHHhcCCcccCCCCcchhHHHHHHHHHHh
Q psy17729 43 NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118 (127)
Q Consensus 43 ~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~----L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~i 118 (127)
..++-.|..++++++.+.+||+.||.+.|+||++++.+|.++ +..+..... ...+|| .++|+.|++++
T Consensus 19 ~~~i~sd~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~d~~~i~~~~~-------~~~~dV-ia~~~~l~e~~ 90 (444)
T 2pfm_A 19 MGAIWTEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIYEIEK-------ETRHDV-VAFTRAVSETP 90 (444)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHCCCCHHHHHHHHH-------HHCCHH-HHHHHHHHTCT
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHHHHhc-------cCCCCH-HHHHHHHHHHc
Confidence 344555899999999999999999999999999999999999 577766421 257899 68899999999
Q ss_pred --ChhhcccCC
Q psy17729 119 --GNVGRKLHT 127 (127)
Q Consensus 119 --G~~gg~LHT 127 (127)
|+.|+++|+
T Consensus 91 g~g~~g~~vH~ 101 (444)
T 2pfm_A 91 ALGEERKWVHY 101 (444)
T ss_dssp TCCGGGGGTTT
T ss_pred CCCcccccccC
Confidence 788999996
No 19
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=98.60 E-value=1.2e-08 Score=86.99 Aligned_cols=93 Identities=9% Similarity=0.046 Sum_probs=72.3
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNI-IDEQDKELIVKTLKDIEYDIEHGKVELKVEL 103 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GI-I~~eea~~Il~~L~~l~~~~~~g~~~~~~~~ 103 (127)
..+.+||..+ .+..+-+ |...+...+...+||+.++.+.|| ||++++.+|.+++.++..+...+ + .....
T Consensus 37 spl~~ry~~~---~m~~~fS----~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~-~-e~~~~ 107 (503)
T 2j91_A 37 SPLASRYASP---EMCFVFS----DRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAE-E-EKRLR 107 (503)
T ss_dssp CHHHHTTSCH---HHHHHTS----HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHH-H-HHHHS
T ss_pred CCcccccCCH---HHHHHhC----hhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhh-h-hhhcC
Confidence 3577898863 4544433 335777888999999999999999 99999999999886665442222 1 24567
Q ss_pred cchhHHHHHHHHHHhChhhcccCC
Q psy17729 104 EDIHMNIESELIRRIGNVGRKLHT 127 (127)
Q Consensus 104 EDih~~iE~~L~e~iG~~gg~LHT 127 (127)
+|||.++|. |++++|++|+++|+
T Consensus 108 hDV~a~v~~-l~e~~g~~~~~iH~ 130 (503)
T 2j91_A 108 HDVMAHVHT-FGHCCPKAAGIIHL 130 (503)
T ss_dssp CHHHHHHHH-HHHHCTTTGGGTTT
T ss_pred CcHHHHHHH-HHHHhccccccccC
Confidence 999999995 89999999999997
No 20
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=98.55 E-value=1.3e-07 Score=79.22 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHH-------HHHHHHhcCCcccCCCCcchhHHHHHHHHHHhC-
Q psy17729 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK-------DIEYDIEHGKVELKVELEDIHMNIESELIRRIG- 119 (127)
Q Consensus 48 ~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~-------~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG- 119 (127)
.|..++++.+.+.+||+.||.+.|+||++++.+|.++++ .+.... + ...+||| ++|++|++++|
T Consensus 20 s~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~~~~~--~-----~~~~dV~-a~~~~l~e~~g~ 91 (450)
T 1re5_A 20 SDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAI--A-----TAGNSAI-PLVKALGKVIAT 91 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHH--H-----HHSSSHH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHHHHHH--h-----ccCccHH-HHHHHHHHHhCC
Confidence 478899999999999999999999999999999999974 333321 1 2579999 88999999999
Q ss_pred --hh-hcccCC
Q psy17729 120 --NV-GRKLHT 127 (127)
Q Consensus 120 --~~-gg~LHT 127 (127)
+. ++++|+
T Consensus 92 ~~~~~~~~vh~ 102 (450)
T 1re5_A 92 GVPEAERYVHL 102 (450)
T ss_dssp HCGGGGGGTTT
T ss_pred CCCcccccccC
Confidence 76 999996
No 21
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=98.50 E-value=2.6e-07 Score=78.46 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=71.4
Q ss_pred HHHHHhhC---HHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC----CCcchhHHH
Q psy17729 38 FLQQFNES---ISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV----ELEDIHMNI 110 (127)
Q Consensus 38 ~~~~~~~s---~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~----~~EDih~~i 110 (127)
.+.+|--| ++....+.+....+.+||+.++.+.|+|+++++.+|.+++++|......+.|.+++ +.+|+|+++
T Consensus 48 a~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmnv 127 (478)
T 3ocf_A 48 AVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNA 127 (478)
T ss_dssp HHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBTTCSSTTHHHHHHH
T ss_pred HHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCccccCCCcchhhccCCccccchH
Confidence 46667422 22226889999999999999999999999999999999999998754556677765 567899887
Q ss_pred H----HHHHHHhC-hhhcc--cC
Q psy17729 111 E----SELIRRIG-NVGRK--LH 126 (127)
Q Consensus 111 E----~~L~e~iG-~~gg~--LH 126 (127)
+ +++++++| +.|++ +|
T Consensus 128 nevia~~a~e~~G~~~G~~~~vH 150 (478)
T 3ocf_A 128 NEVIANRALEHLGRPRGDYQTIH 150 (478)
T ss_dssp HHHHHHHHHHHTTCCTTCTTTSC
T ss_pred HHHHHHHHHHHhchhcCCCCccC
Confidence 5 67789999 57877 98
No 22
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=98.39 E-value=4.3e-08 Score=80.27 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=68.5
Q ss_pred hhhhccCCCchHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy17729 25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (127)
Q Consensus 25 ~lw~gR~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E 104 (127)
+||++||+.+ .+..+-+ |..++++...+-+||+.||.+.|+||++++.+|.+++.++..++..-. ......+
T Consensus 9 ~l~~~~~~~~---~m~~~fs----~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~~~-~~~~~~~ 80 (359)
T 2fel_A 9 PFLSGLFGDS---EIIELFS----AKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALR-HGVAKDG 80 (359)
T ss_dssp TTTHHHHCCH---HHHGGGS----HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHHHH-HHHHHHS
T ss_pred cccccccCCH---HHHHHcC----cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHHHH-hhccccC
Confidence 4777777743 3333222 566677888888999999999999999999999999976532211000 0112346
Q ss_pred chhHHHHHHHHHHhC-hhhcccCC
Q psy17729 105 DIHMNIESELIRRIG-NVGRKLHT 127 (127)
Q Consensus 105 Dih~~iE~~L~e~iG-~~gg~LHT 127 (127)
+.+.++|+.|++++| +.++++|+
T Consensus 81 ~~~~~~~~~l~~~~g~~~~~~vH~ 104 (359)
T 2fel_A 81 VVVPELIRQMRAAVAGQAADKVHF 104 (359)
T ss_dssp SSHHHHHHHHHTTSCGGGGGGTTT
T ss_pred CcHHHHHHHHHHHcCccccchhcC
Confidence 678899999999999 68999996
No 23
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=98.26 E-value=1.6e-06 Score=72.60 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=56.8
Q ss_pred HHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHH----HHHHHHHhcCCcccCCCCcchhHHHHHHHHHHhChh-hc
Q psy17729 49 DEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL----KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNV-GR 123 (127)
Q Consensus 49 D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L----~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~iG~~-gg 123 (127)
|...++..+.+..||+.++.+ |+||++.+.+|.+++ ..+... .....+||| ++|++|++++|+. ||
T Consensus 16 ~~~~~~~~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~~d~~~i~~~-------e~~~~hdV~-a~~~~l~e~~g~~~~~ 86 (438)
T 4eei_A 16 DENKYAKMLEVELAILEALED-RMVPKGTAAEIRARAQIRPERVDEI-------EKVTKHDII-AFCTSIAEQFTAETGK 86 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-TTSCTTHHHHHHHHCCCCHHHHHHH-------HHHHSCHHH-HHHHHHHTTSCTTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhCCCCHHHHHHH-------HHhcCCCHH-HHHHHHHHHcCHHhhc
Confidence 567888999999999999999 999999999998873 222221 112357998 8999999999976 99
Q ss_pred ccCC
Q psy17729 124 KLHT 127 (127)
Q Consensus 124 ~LHT 127 (127)
++|+
T Consensus 87 ~iH~ 90 (438)
T 4eei_A 87 FFHF 90 (438)
T ss_dssp TTTC
T ss_pred ccCC
Confidence 9996
No 24
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=98.19 E-value=3.4e-06 Score=71.92 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=70.8
Q ss_pred HHHHHhhC-H--HHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCC----CCcchhH--
Q psy17729 38 FLQQFNES-I--SVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKV----ELEDIHM-- 108 (127)
Q Consensus 38 ~~~~~~~s-~--~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~----~~EDih~-- 108 (127)
.+.+|--+ . .+...+.+....+.+|++.++.+.| |+++.+.+|.+++++|......+.|+.++ +-+++++
T Consensus 55 a~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~G-l~~~~a~aI~~a~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~ 133 (490)
T 3e04_A 55 STMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYG-LDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNV 133 (490)
T ss_dssp HHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGT-CCHHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHH
T ss_pred HHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHcCCcccCCceeeecCCCCCcccccH
Confidence 46777533 2 3457899999999999999999999 99999999999999998754445676543 3456555
Q ss_pred --HHHHHHHHHhC-hhhccc--CC
Q psy17729 109 --NIESELIRRIG-NVGRKL--HT 127 (127)
Q Consensus 109 --~iE~~L~e~iG-~~gg~L--HT 127 (127)
.||++++|++| +.|+++ |+
T Consensus 134 NEvia~ra~e~~G~~~g~~~~vHp 157 (490)
T 3e04_A 134 NEVISNRAIEMLGGELGSKIPVHP 157 (490)
T ss_dssp HHHHHHHHHHHTTCCTTSCCSSCC
T ss_pred HHHHHHHHHHHhCcccCCCCCCCc
Confidence 59999999999 789885 74
No 25
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=98.08 E-value=9.1e-06 Score=69.11 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHh-hCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC--------cchhH
Q psy17729 38 FLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL--------EDIHM 108 (127)
Q Consensus 38 ~~~~~~-~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~--------EDih~ 108 (127)
.+.+|- +...++..+.+....+-+|++.+..+.|+|+++.+..|.++.++|.+..-.+.|+.++-. ..+++
T Consensus 50 a~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~Ne 129 (482)
T 3gtd_A 50 SLNNFKISKQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNE 129 (482)
T ss_dssp HHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHH
T ss_pred HHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCcccCCCeehhccCCCccccchHHH
Confidence 466664 333467899999999999999999999999999999999999999875334567665532 24777
Q ss_pred HHHHHHHHHhC-hhhccc--CC
Q psy17729 109 NIESELIRRIG-NVGRKL--HT 127 (127)
Q Consensus 109 ~iE~~L~e~iG-~~gg~L--HT 127 (127)
.||+++++++| +.|+++ |+
T Consensus 130 vIa~ra~e~~G~~~g~~~~vHp 151 (482)
T 3gtd_A 130 VIASIANEELTGKKGGKFPVHP 151 (482)
T ss_dssp HHHHHHHHHHHSCCCSSSSSCC
T ss_pred HHHHHHHHHhCcccCCcCcCCc
Confidence 79999999999 788875 64
No 26
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=84.94 E-value=3.1 Score=35.14 Aligned_cols=83 Identities=14% Similarity=0.014 Sum_probs=61.3
Q ss_pred HHHHHh-hCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc--------chhH
Q psy17729 38 FLQQFN-ESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE--------DIHM 108 (127)
Q Consensus 38 ~~~~~~-~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E--------Dih~ 108 (127)
.+.+|. +...+...+.+....+-+|-+..-.+.|+|+++.+.+|.++.++|....-.+.|..+.-.. -+..
T Consensus 61 a~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~ne 140 (495)
T 4hgv_A 61 SLGNFKIGWEKQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANE 140 (495)
T ss_dssp HHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHH
T ss_pred HHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCchhhccchhhhhhccccccCcchhH
Confidence 466664 3334557788888899999999999999999999999999999997743334565544221 2455
Q ss_pred HHHHHHHHHhCh
Q psy17729 109 NIESELIRRIGN 120 (127)
Q Consensus 109 ~iE~~L~e~iG~ 120 (127)
.|-++..+..|.
T Consensus 141 vian~a~e~lg~ 152 (495)
T 4hgv_A 141 VVSNRAIELLGG 152 (495)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCc
Confidence 677788888884
No 27
>3exm_A Phosphatase SC4828; nucleoside diphosphatase, GDP/UDP'ASE, non-HYD GDP analogue, lipocalcin fold, metalloprotein, hydrolase; HET: GP2; 1.65A {Streptomyces coelicolor A3} PDB: 3cbt_A* 3bxt_A
Probab=68.93 E-value=4.8 Score=31.08 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=33.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcc
Q psy17729 69 ERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELED 105 (127)
Q Consensus 69 ~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~ED 105 (127)
++|.+|++.+..+.++++.|...++.+++.|++.+++
T Consensus 176 ~~g~y~~e~~~~a~~~~~~L~~~I~~~~~PF~~~~~~ 212 (237)
T 3exm_A 176 RDGLMDPASAGRVRRAGRSAVAEIRAWGSPFADGWEH 212 (237)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHTCTTGGGTGGG
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc
Confidence 6899999999999999999999999999988877665
No 28
>2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp}
Probab=63.75 E-value=14 Score=24.53 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy17729 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 48 ~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~ 91 (127)
.|..+|-.--.++.| .+.|+|+.++++.|+..|++=...
T Consensus 45 lDTQmfGlSrEIdFA-----vrlGli~~~~Gk~ll~~LE~~Ls~ 83 (91)
T 2odm_A 45 LDTQMFGLQKEVDFA-----VKLGLVDREDGKQIMLRLEKELSK 83 (91)
T ss_dssp HHHHHHHHHHHHHHH-----HHTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHH-----HHHCCccHHHHHHHHHHHHHHHHH
Confidence 466666665555555 578999999999999999876654
No 29
>2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein, PSI, protein STRU initiative, midwest center for structural genomics; 2.20A {Enterococcus faecalis} SCOP: a.23.6.1
Probab=58.65 E-value=17 Score=24.68 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy17729 48 VDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 48 ~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~ 91 (127)
+|..||-.--.++.| .+.|+|+.++++.|+..|.+=...
T Consensus 47 lDTQmyGlSrEIdFA-----VrlGli~~~~Gk~ll~~LE~~Ls~ 85 (104)
T 2gbo_A 47 VDTQMYGFSRQVTYA-----TRLGILTNDEGHRLLSDLERELNQ 85 (104)
T ss_dssp HHHHHHHHHHHHHHH-----HHHTSSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhchHHHHHHH-----HHHcCccHHHHHHHHHHHHHHHHH
Confidence 456666655555555 577999999999999998876553
No 30
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=42.85 E-value=26 Score=23.10 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=51.9
Q ss_pred chHHHHHHHhhCHHHHHHHHHHhhhhcHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHH
Q psy17729 34 SMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESE 113 (127)
Q Consensus 34 ~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~ 113 (127)
.|.+.+.+.+...+-+-..|+.-|....-|+..+...--+|+.+.. .+|.++.+.+ +.+-....-||..|+..
T Consensus 5 ~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~---~~l~~~h~~F----iaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 5 APADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLS---MAMQKIYQTF----VALAAQLQSIHENVKVL 77 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5777788888888888888999999999999999987788875544 4444444331 12334456788888754
No 31
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=34.18 E-value=95 Score=20.10 Aligned_cols=49 Identities=10% Similarity=-0.041 Sum_probs=35.9
Q ss_pred hcHHHHHHHhhcCCCCHHHHHHHH--HHHHHHHHHHhcCCcccCCCCcchhHHHHHHH
Q psy17729 59 GSIAHVTMLGERNIIDEQDKELIV--KTLKDIEYDIEHGKVELKVELEDIHMNIESEL 114 (127)
Q Consensus 59 ~~~AH~~mL~~~GII~~eea~~Il--~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L 114 (127)
...+...+|.+.||-|.++.+.+= .+-.+|... ..+|.. +++.++|..+
T Consensus 12 iG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~------~~~~c~-~~L~aL~gAi 62 (93)
T 3bqs_A 12 IGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN------DSSVCM-SELYALEGAV 62 (93)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTT------CTTCCH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHH------CCCCCH-HHHHHHHHHH
Confidence 356888999999999999988763 445555442 355665 8888888776
No 32
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=31.23 E-value=74 Score=23.19 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHhhcCCCC-HHHHHHHHHHHHHHHHHHhcCCcccCCCCcchhHHHHHHHHHH
Q psy17729 64 VTMLGERNIID-EQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRR 117 (127)
Q Consensus 64 ~~mL~~~GII~-~eea~~Il~~L~~l~~~~~~g~~~~~~~~EDih~~iE~~L~e~ 117 (127)
+..|.+.|++. .+++..++..|.++..+ +...-++.+=.+|.|..++.++.+.
T Consensus 39 A~~L~e~g~vei~d~~~~~I~eL~~il~e-Er~~~~L~~LP~dFY~rvr~yI~~L 92 (171)
T 3anw_B 39 ARELWEAGVVEIVDETDKIIGEIDKVIAE-ERESEPLTLLPEGLYERAEFYAYYL 92 (171)
T ss_dssp HHHHHHTTSEEECCTHHHHHHHHHHHHHH-HTTSSSCCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHCCCEeeccccchHHHHHHHHHHH-hhccCccccCCHHHHHHHHHHHHHH
Confidence 56899999988 34466777788888754 3333456677889999999887643
No 33
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens}
Probab=23.20 E-value=27 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=23.3
Q ss_pred hhhcHHHHHHHhhc----------CCCCHHHHHHHHHHHH
Q psy17729 57 IAGSIAHVTMLGER----------NIIDEQDKELIVKTLK 86 (127)
Q Consensus 57 i~~~~AH~~mL~~~----------GII~~eea~~Il~~L~ 86 (127)
..++..-+..|... |+||+.+|.++.++|.
T Consensus 82 ~~Ct~eQL~~Lk~~GaiP~~a~~CgLITk~DaErLc~~ll 121 (125)
T 3eq5_A 82 SRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALL 121 (125)
T ss_dssp EECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHcCCCCCCCccccceeHHHHHHHHHHhc
Confidence 56677788888765 5566999999998875
No 34
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=22.77 E-value=65 Score=25.62 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=37.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC---------CcchhHHHHHH--HHHHhC
Q psy17729 66 MLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVE---------LEDIHMNIESE--LIRRIG 119 (127)
Q Consensus 66 mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~---------~EDih~~iE~~--L~e~iG 119 (127)
.|.+++.|++++...|+....++... ++.-+.++.. ..|||-++... |.+.+|
T Consensus 24 ~~~~~~~l~~~~~~~l~~~~~~il~~-ep~~~~l~~p~~~~~ri~viGDIHG~~~~L~~ll~~~g 87 (335)
T 3icf_A 24 LFLKGKYLPKKYVAAIISHADTLFRQ-EPSMVELENNSTPDVKISVCGDTHGQFYDVLNLFRKFG 87 (335)
T ss_dssp TGGGTCCCCHHHHHHHHHHHHHHHHT-SCSEEEECCSSSTTCEEEEECCCTTCHHHHHHHHHHHC
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHh-CCCeEEecCCcccCceEEEEecCCCCHHHHHHHHHHcC
Confidence 45688999999999999999999886 4444444332 36999877654 334455
No 35
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=22.70 E-value=89 Score=18.87 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy17729 72 IIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 72 II~~eea~~Il~~L~~l~~~ 91 (127)
-+|++.+.+|+++|.+--..
T Consensus 4 ~lt~eq~~aILkaLdeaIe~ 23 (57)
T 3fxd_A 4 QLSDEQKETILKALNDAIEK 23 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHc
Confidence 46899999999999987665
No 36
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=22.67 E-value=58 Score=20.47 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy17729 71 NIIDEQDKELIVKTLKDIEY 90 (127)
Q Consensus 71 GII~~eea~~Il~~L~~l~~ 90 (127)
..|++++|+.+++.|+++..
T Consensus 51 ~~ideeeA~etl~~l~el~~ 70 (75)
T 2z1c_A 51 EKLDEKKAMEILEAWAEVEK 70 (75)
T ss_dssp EEECHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999876
No 37
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=22.49 E-value=1.2e+02 Score=17.78 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=26.0
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy17729 68 GERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104 (127)
Q Consensus 68 ~~~GII~~eea~~Il~~L~~l~~~~~~g~~~~~~~~E 104 (127)
.+.|-++++.+..|--+.+-|... |.++++..
T Consensus 17 ~~~~~~s~D~~ESleVAiqCi~~a-----F~v~~~d~ 48 (52)
T 4gof_A 17 LRHGGLSSDAQESLEVAIQCLETA-----FGVTVEDS 48 (52)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHH-----HTCCSSCC
T ss_pred cccCCcCHhHHHHHHHHHHHHHHH-----cCCCcccc
Confidence 467999999999999999999886 66666443
No 38
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=21.93 E-value=2.1e+02 Score=20.46 Aligned_cols=30 Identities=3% Similarity=0.110 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy17729 62 AHVTMLGERNIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 62 AH~~mL~~~GII~~eea~~Il~~L~~l~~~ 91 (127)
|=...|.+.|+||++|...-...+..-...
T Consensus 115 ALe~lLvekGvit~~EL~ar~aEv~ar~~~ 144 (157)
T 2zzd_B 115 TAARILVDKQFVTLTELHNKIVEMRERVAS 144 (157)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 455679999999999987666555554443
No 39
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=20.99 E-value=1.7e+02 Score=18.95 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=25.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCc
Q psy17729 66 MLGERNIIDEQDKELIVKTLKDIEYDIEHGKV 97 (127)
Q Consensus 66 mL~~~GII~~eea~~Il~~L~~l~~~~~~g~~ 97 (127)
-|.+.||=..-..++|+.+++.+++.-+.|.+
T Consensus 52 dL~~~GVta~GaRrKil~aI~~lr~~~~~~~~ 83 (88)
T 2d3d_A 52 TLEKKGVLALGARRKLLKAFGIVIDYKERDLI 83 (88)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHcCCccHhHHHHHHHHHHHHHHHHhcCcc
Confidence 46778976699999999999999887555643
No 40
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=20.50 E-value=97 Score=18.42 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.1
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy17729 67 LGERNIIDEQDKELIVKTLKDIEYDI 92 (127)
Q Consensus 67 L~~~GII~~eea~~Il~~L~~l~~~~ 92 (127)
|.+-||-+.....+|++++..++...
T Consensus 46 L~~lGI~~~g~r~kil~~i~~L~~~~ 71 (74)
T 2gle_A 46 LKALGMTSSQDRALVKKKLKEMKMSL 71 (74)
T ss_dssp HHTTTCCCHHHHHHHHHHHHSHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999998763
No 41
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=20.46 E-value=69 Score=21.48 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy17729 71 NIIDEQDKELIVKTLKDIEYD 91 (127)
Q Consensus 71 GII~~eea~~Il~~L~~l~~~ 91 (127)
..|++++|+.+++.|+++...
T Consensus 75 ~kIDeeeA~etl~~l~el~~~ 95 (103)
T 3d3r_A 75 NKIDRNDALQSLELYQEIVSK 95 (103)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHh
Confidence 468999999999999998774
Done!