RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17729
(127 letters)
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 146 bits (371), Expect = 3e-43
Identities = 52/104 (50%), Positives = 69/104 (66%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+LW G F + +E +++F SIS D+ L EDIAGSIAH ML ++ I+ E++ E I+
Sbjct: 4 NKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILA 63
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L +I +IE GK E ELEDIHM IE+ L RIG+VG KLHT
Sbjct: 64 GLDEILEEIEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLHT 107
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 126 bits (320), Expect = 8e-36
Identities = 47/104 (45%), Positives = 67/104 (64%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+LW G F + +++FN SIS D+ L DIAGSIAH ML ++ II E++ I++
Sbjct: 3 NKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILE 62
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+++ +I GK EL + ED+H IE+ LI RIG+VG KLHT
Sbjct: 63 GLEELLEEIRAGKFELDPDDEDVHTAIEARLIERIGDVGGKLHT 106
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 117 bits (295), Expect = 2e-32
Identities = 46/83 (55%), Positives = 54/83 (65%)
Query: 45 SISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE 104
SIS D L+ EDIAGSIAH ML E+ I+ E++ I+ L I +IE G EL E E
Sbjct: 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDE 60
Query: 105 DIHMNIESELIRRIGNVGRKLHT 127
DIHM IE LI RIG+VG KLHT
Sbjct: 61 DIHMAIERRLIERIGDVGGKLHT 83
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 116 bits (292), Expect = 9e-32
Identities = 48/116 (41%), Positives = 76/116 (65%)
Query: 12 GEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERN 71
+ ++ + K+LW G F++ + +++FNESIS D+ LY+EDI GS AH +ML ++
Sbjct: 4 SMSASEEEAAKEKKLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQG 63
Query: 72 IIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
II ++D++ I+ L +IE +IE GK E + + ED+HMN E+ L IG +KLHT
Sbjct: 64 IITDEDRDSILDGLDEIEKEIEAGKFEWRPDREDVHMNNEARLTELIGEPAKKLHT 119
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 103 bits (258), Expect = 5e-27
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F M+ + +FN S+S D+ L DI GSIAH ML + I+ E++ I++ L
Sbjct: 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGL 60
Query: 86 KDIEYDIEHGKVELKVELEDIHMNIESELIRRIG-NVGRKLHT 127
+++ + G L + EDIHM IE ELI R+G ++G KLHT
Sbjct: 61 NELKEEGREGPFILDPDDEDIHMAIERELIDRVGEDLGGKLHT 103
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 77.7 bits (192), Expect = 6e-18
Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEAL 62
Query: 86 KDIEYDIEHG-KVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
++ ++ + L + EDIH +E +LI ++G++G+KLHT
Sbjct: 63 NELLEEVRANPQQILASDAEDIHSWVEGKLIDKVGDLGKKLHT 105
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 73.7 bits (182), Expect = 1e-16
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 53 YREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIES 112
R D+ AH L E ++ ++ E I+ L +I I +VE + M +E
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEE 60
Query: 113 ELIRRIGN-VGRKLHT 127
L R G G +HT
Sbjct: 61 VLAERAGELNGGYVHT 76
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 67.5 bits (165), Expect = 2e-14
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ + +QFN+S+ D L +DI GSIA L ++ E++++ + L
Sbjct: 3 LWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELAL 62
Query: 86 KDIEYDI-EHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
+++ ++ E + L + EDIH +E +LI ++G++G+KLHT
Sbjct: 63 NELKLEVMEDPEQILLSDAEDIHSWVEQQLIGKVGDLGKKLHT 105
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 49.9 bits (119), Expect = 4e-08
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 25 QLWTGCFQQ-SMNEFLQQF-NESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIV 82
++W+G + N+F + I D+ L + +I +A+ L +R +I E+ + ++
Sbjct: 2 KIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVI 61
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKL 125
L DI +E+ ++LED+H IE+ +IRR G++ +
Sbjct: 62 NAL----IDIYKNGIEIDLDLEDVHTAIENFVIRRCGDMFKNF 100
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 34.2 bits (79), Expect = 0.009
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 29 GCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDI 88
G F + + F + + L EDI G A + N++ +++ I+K L ++
Sbjct: 1 GRFTVPADALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAIIKALDEV 60
Query: 89 EYDI-EHGKVELKVELEDIH----MNIE---SELIRRIGNVGRKLHT 127
+ LKV E MN+ EL+ ++ + K+HT
Sbjct: 61 AEEGKADDAFPLKVIQEGSGTAVNMNLNEVIGELLGQLVHPNDKVHT 107
>gnl|CDD|235443 PRK05395, PRK05395, 3-dehydroquinate dehydratase; Provisional.
Length = 146
Score = 31.2 bits (72), Expect = 0.075
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
TL DIE +E EL VELE N E ELI RI
Sbjct: 26 TTLADIEALLEEEAAELGVELEFFQSNHEGELIDRI 61
>gnl|CDD|223828 COG0757, AroQ, 3-dehydroquinate dehydratase II [Amino acid
transport and metabolism].
Length = 146
Score = 29.5 bits (67), Expect = 0.27
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
TL+DIE D+E +L VE+E N E ELI I
Sbjct: 25 TTLEDIEADLEEEAAKLGVEVEFRQSNHEGELIDWI 60
>gnl|CDD|129834 TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
This membrane-associated enzyme converts
1,4-dihydroxy-2-naphthoic acid (DHNA) to
demethylmenaquinone, a step in menaquinone biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 284
Score = 28.3 bits (63), Expect = 1.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 80 LIVKTLKDIEYDIEHGKVELKVELEDI 106
L + L+DI D GK L V L D
Sbjct: 181 LNINNLRDIPTDARAGKNTLAVRLGDA 207
>gnl|CDD|130160 TIGR01088, aroQ, 3-dehydroquinate dehydratase, type II. This model
specifies the type II enzyme. The type I enzyme, often
found as part of a multifunctional protein, is described
by TIGR01093 [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 141
Score = 27.7 bits (62), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
TL++I IE +L VELE N E +LI +I
Sbjct: 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKI 59
>gnl|CDD|189894 pfam01220, DHquinase_II, Dehydroquinase class II.
Length = 140
Score = 27.8 bits (63), Expect = 1.3
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRK 124
TL DIE + EL VELE N E ELI I
Sbjct: 25 TTLADIEARLRELAAELGVELEFFQSNHEGELIDWIHEARGD 66
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Diaminopimelate Decarboxylase.
Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20)
participates in the last step of lysine biosynthesis. It
converts meso-2,6-diaminoheptanedioate to L-lysine. It
is a fold type III PLP-dependent enzyme that contains an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. DapDC exists as homodimers with
active sites that lie at the interface between the TIM
barrel domain of one subunit and the beta-sandwich
domain of the other subunit. Homodimer formation and the
presence of the PLP cofactor are required for catalytic
activity.
Length = 373
Score = 27.4 bits (62), Expect = 1.9
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 83 KTLKDIEYDIEHGKVELKVELEDIHMNIESE-LIRRIGNVGRKL 125
K+ +++E +E G + +N++S + R+G + +L
Sbjct: 82 KSDEELELALELG---------ILRINVDSLSELERLGEIAPEL 116
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 27.3 bits (60), Expect = 2.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 62 AHVTMLGERNIIDEQDKELIVKTLKDIE 89
AH+ ML E N++ +++ + I+ LK +E
Sbjct: 47 AHIVMLTEENLMKKEEAKFILHALKKVE 74
>gnl|CDD|220780 pfam10492, Nrf1_activ_bdg, Nrf1 activator activation site binding
domain. In Drosophila, the erect wing (ewg) protein is
required for proper development of the central nervous
system and the indirect flight muscles. The fly ewg
gene encodes a novel DNA-binding domain that is also
found in four genes previously identified in sea
urchin, chicken, zebrafish, and human. Nuclear
respiratory factor-1 is a transcriptional activator
that has been implicated in the nuclear control of
respiratory chain expression in vertebrates. The first
26 amino acids of nuclear respiratory factor-1 are
required for the binding of dynein light chain. The
interaction with dynein light chain is observed for
both ewg and Nrf-1, transcription factors that are
structurally and functionally similar between humans
and Drosophila. The highest level of expression of both
ewg and Nrf-1 was found in the central nervous system,
somites, first branchial arch, optic vesicle, and otic
vesicle. In the mouse Nrf-1 protein, there is an
activation domain at 303-469, the most conserved part
of which is this domain 446-469. Ewg is a site-specific
transcriptional activator, and evolutionarily conserved
regions of ewg contribute both positively and
negatively to transcriptional activity. The family
Nrf1_DNA-bind is associated with this domain towards
the N-terminal, as is the N terminal of the activation
domain.
Length = 68
Score = 25.7 bits (56), Expect = 2.6
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 33 QSMNEFLQQFNESISVDEVLYREDIAGSIAH--VTMLGERNIIDEQDKELIVKTLKD 87
Q++ +QQ + V V + GS H +TM Q + + V TLKD
Sbjct: 12 QTVVANIQQLITPMQVANVNITQTSGGSTGHHQMTMQAIPGQEPMQGQAVQVVTLKD 68
>gnl|CDD|238262 cd00466, DHQase_II, Dehydroquinase (DHQase), type II.
Dehydroquinase (or 3-dehydroquinate dehydratase)
catalyzes the reversible dehydration of 3-dehydroquinate
to form 3-dehydroshikimate. This reaction is part of two
metabolic pathways: the biosynthetic shikimate pathway
and the catabolic quinate pathway. There are two types
of DHQases, which are distinct from each other in amino
acid sequence and three-dimensional structure. Type I
enzymes usually catalyze the biosynthetic reaction using
a syn elimination mechanism. In contrast, type II
enzymes, found in the quinate pathway of fungi and in
the shikimate pathway of many bacteria, are dodecameric
enzymes that employ an anti elimination reaction
mechanism.
Length = 140
Score = 26.6 bits (60), Expect = 2.9
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 83 KTLKDIEYDI-EHGKVELKVELEDIHMNIESELIRRI 118
TL DIE + E EL VE+E N E ELI I
Sbjct: 24 TTLADIEALLRELAA-ELGVEVEFFQSNHEGELIDWI 59
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 26.9 bits (60), Expect = 3.5
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 9/46 (19%)
Query: 81 IVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLH 126
I++ L ++ +D + G++ L EL D MN+ ELI+ GRK
Sbjct: 60 ILR-LIEVLFDRKTGRLALVFELMD--MNL-YELIK-----GRKRP 96
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 331
Score = 26.6 bits (58), Expect = 3.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 72 IIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIR 116
I D D + + LK YD HG+ + VE++D H+ + + IR
Sbjct: 32 INDLLDADYMAYMLK---YDSTHGRFDGTVEVKDGHLIVNGKKIR 73
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 26.2 bits (58), Expect = 6.0
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 31 FQQSMNEFLQQ-FNESISVDE 50
Q +MN FLQQ E++ D
Sbjct: 411 LQPAMNAFLQQTMKEAVPYDM 431
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 26.0 bits (57), Expect = 6.6
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEF 38
+D+ D+ ++D + + ++ GC +++ N F
Sbjct: 545 IDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWF 580
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 25.8 bits (57), Expect = 7.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 89 EYDIEHGKVELKVELEDIHMNIESELIR 116
+YD HG+ V E + + + IR
Sbjct: 48 KYDTSHGRFAWDVRQERDQLFVGDDAIR 75
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota. This model
describes the Drosophila protein Pelota, the budding
yeast protein DOM34 which it can replace, and a set of
closely related archaeal proteins. Members contain a
proposed RNA binding motif. The meiotic defect in pelota
mutants may be a complex result of a protein translation
defect, as suggested in yeast by ribosomal protein
RPS30A being a multicopy suppressor and by an altered
polyribosome profile in DOM34 mutants rescued by RPS30A.
This family is homologous to a family of peptide chain
release factors. Pelota is proposed to act in protein
translation [Protein synthesis, Translation factors].
Length = 351
Score = 25.5 bits (56), Expect = 8.1
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 70 RNIIDEQDKELIVKT-----LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIG 119
II++ D E L I D V+L +E+E + ++++E +R G
Sbjct: 29 YQIIEKGDVEFAFTKRRTQDLDKIRSDKSKDTVKLGIEVESVEFDMKTERLRYKG 83
>gnl|CDD|183405 PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.
Length = 344
Score = 25.5 bits (56), Expect = 8.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 33 QSMNEFLQQFNESISVDEVLYREDIAGSIAHVTML 67
Q++ LQ+ +SVD++ D ++ VT L
Sbjct: 106 QALEPLLQRVGIDVSVDQLAKYIDPNAAMTLVTNL 140
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 25.7 bits (56), Expect = 8.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 76 QDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
Q+ + +++ +DIE ++E K ELK L+ + + E RI
Sbjct: 237 QENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERI 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.136 0.377
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,670,194
Number of extensions: 616100
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 63
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.5 bits)