RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17729
(127 letters)
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 153 bits (388), Expect = 8e-46
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+ W G F + + +FN S++ D L+RED+ + H ML ++ ++ E I+K
Sbjct: 3 HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILK 62
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L IE +IE G + ELED+HMN+E+ L +G G KLHT
Sbjct: 63 GLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHT 106
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 146 bits (370), Expect = 3e-43
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
+LW G F S + +++ N SI+ D+ L DI GS+A+ L + I+ + + E I+
Sbjct: 8 DKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILS 67
Query: 84 TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHT 127
L+ I + G +K EDIH E L IG++ KLHT
Sbjct: 68 GLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHT 111
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 146 bits (370), Expect = 3e-43
Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 26 LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
LW G F Q+ ++ +QFN+S+ D L +DI GS+A L ++ +++ + + L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 62
Query: 86 KDIEYDIEHGKVE-LKVELEDIHMNIESELIRRIGNVGRKLHT 127
+ D+ + L+ + EDIH +E +LI ++G +G+KLHT
Sbjct: 63 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHT 105
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta
protein, lyase, aromatic amino acid biosynthesis; 1.5A
{Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB:
1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A*
3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Length = 146
Score = 32.8 bits (76), Expect = 0.011
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
LG R E + T ++ IE EL ++ + E++L+ I
Sbjct: 15 RLGRR----EPA---VYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWI 62
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic
amino acid biosynthesis, drug target, citrazinic acid, S
genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis}
PDB: 3n59_A*
Length = 172
Score = 33.0 bits (76), Expect = 0.012
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
LG R E + T ++ IE EL ++ + E++L+ I
Sbjct: 41 RLGRR----EPA---VYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWI 88
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP:
c.23.13.1
Length = 143
Score = 32.8 bits (76), Expect = 0.012
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
LG R E + + +TL DIE D+ L ++L N E +LI I
Sbjct: 13 RLGSR----EPE---VFGRQTLTDIETDLFQFAEALHIQLTFFQSNHEGDLIDAI 60
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A
{Thermus thermophilus}
Length = 149
Score = 32.1 bits (74), Expect = 0.020
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
+LG R E + + TL+++E E EL + + N E +LI +
Sbjct: 12 LLGRR----EPE---VYGRTTLEELEALCEAWGAELGLGVVFRQTNYEGQLIEWV 59
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase,
shikimate pathway, dodecameric quaternary structure;
HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1
PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Length = 156
Score = 32.1 bits (74), Expect = 0.021
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
+LG+ + + I TL D+E ++ N E EL+ I
Sbjct: 19 LLGQA----QPE---IYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWI 66
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center
for structural genomics of infec diseases, csgid,
unknown function; 1.60A {Bifidobacterium longum}
Length = 151
Score = 32.1 bits (74), Expect = 0.022
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
LG R + D + + L + +L +E+E + E+E++R +
Sbjct: 17 RLGVR----QPD---VYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWM 64
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid
biosynthesis, aromatic amino acid biosynthesis, lyase,
structural genomics; 1.65A {Yersinia pestis}
Length = 153
Score = 31.7 bits (73), Expect = 0.027
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
+LG R E + TL +I +E + V L + N E LI I
Sbjct: 20 LLGTR----EPE---KYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSI 67
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino
acid biosynthesis, lyase; 1.7A {Actinobacillus
pleuropneumoniae} SCOP: c.23.13.1
Length = 154
Score = 31.7 bits (73), Expect = 0.030
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRI 118
MLG+R E I +TL DIE ++ EL+ N E LI RI
Sbjct: 14 MLGKR----EPH---IYGSQTLSDIEQHLQQSAQAQGYELDYFQANGEESLINRI 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.031
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 3 LDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIA 62
LDI +N P L + G + + E VD L E I I
Sbjct: 1662 LDIVINN----------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 63 HVTMLGERNIIDEQDKELIVKT 84
+ + +K L+ T
Sbjct: 1712 EHS----TSYTFRSEKGLLSAT 1729
Score = 27.3 bits (60), Expect = 1.6
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 21 KELKQL-WTGC-FQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDK 78
K + L + G ++ SI D + E + ML N+ EQ +
Sbjct: 298 KAITVLFFIGVRCYEAYPN--TSLPPSILEDSLENNEGVPSP-----MLSISNLTQEQVQ 350
Query: 79 ELIVKT 84
+ + KT
Sbjct: 351 DYVNKT 356
Score = 26.9 bits (59), Expect = 2.4
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 22/75 (29%)
Query: 2 MLDIPEDNEEGEQDTPDKPKELKQLW-TGCFQQSMNEFLQQFNESISVDEVLYREDIAGS 60
+L+ +N EG +P L + Q+ + +++ + N + + + I+
Sbjct: 323 ILEDSLENNEGVP-SP-------MLSISNLTQEQVQDYVNKTNSHLPAGKQVE---IS-- 369
Query: 61 IAHVTML--GERNII 73
L G +N++
Sbjct: 370 ------LVNGAKNLV 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.14
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Query: 19 KPKELKQLWTGCFQQSMNEFLQQFNESI----SVDEVLYREDIAGSIAHVTMLGERNIID 74
+P E ++ F + L F S + +++ + I +++
Sbjct: 367 EPAEYRK----MFDR-----LSVFPPSAHIPTILLSLIWFDVIKSD--------VMVVVN 409
Query: 75 E-QDKELIVKTLKDIEYDIEHGKVELKVELED---IHMNI 110
+ L+ K K+ I +ELKV+LE+ +H +I
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Score = 28.3 bits (62), Expect = 0.85
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 28/130 (21%)
Query: 13 EQDTPDKPKELKQLWTG----CFQQSMNEFL-------QQFNESISVDEVL--YREDIAG 59
L +W +N+ Q +IS+ + + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 60 SIA-HVTMLGERNIIDEQDKELIVKTLKD------IEY---DIEHGKVELKVELEDIHMN 109
A H +++ NI D + ++ D I + +IEH E + ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVFLD 499
Query: 110 ---IESELIR 116
+E ++
Sbjct: 500 FRFLEQKIRH 509
Score = 27.9 bits (61), Expect = 0.93
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 34/125 (27%)
Query: 7 EDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTM 66
+ + TPD+ K L + C + L RE + + +++
Sbjct: 292 DHHSMTL--TPDEVKSLLLKYLDC----------------RPQD-LPREVLTTNPRRLSI 332
Query: 67 LGE------------RNIIDEQDKELIVKTLKDIE-YDIEHGKVELKVELEDIHMNIESE 113
+ E +++ ++ +I +L +E + L V +I +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTI 390
Query: 114 LIRRI 118
L+ I
Sbjct: 391 LLSLI 395
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Length = 167
Score = 29.1 bits (66), Expect = 0.27
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEH--GKVELKVELEDIHMNIESELIRRI 118
+LG R E + +L DIE E+ N E +I RI
Sbjct: 27 LLGTR----EPE---KYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRI 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.28
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 22/50 (44%)
Query: 18 DKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIA-HVTM 66
+K + LK+L Q S+ LY +D A ++A TM
Sbjct: 18 EK-QALKKL-----QASLK---------------LYADDSAPALAIKATM 46
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway,
aromatic amino acid biosynthesis, lyase, sulphonamide;
HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A*
2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Length = 176
Score = 29.1 bits (66), Expect = 0.30
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 66 MLGERNIIDEQDKELI--VKTLKDIEYDIEHG--KVELKVELEDIHMNIESELIRRI 118
MLG R + + + TL I ++ + L VELE N E E+I +I
Sbjct: 22 MLGHR----DPR---LYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKI 71
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 25.7 bits (57), Expect = 5.8
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 65 TMLGERNIIDEQDKELIVKTLKDI 88
TMLG + + DI
Sbjct: 101 TMLGSQPYGQSDTPGIFQYAAGDI 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.136 0.377
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,983,397
Number of extensions: 115595
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 39
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)