RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1773
(359 letters)
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 39.2 bits (92), Expect = 1e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
P+MC + CGK F L+ H+R H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 31.5 bits (72), Expect = 0.007
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
+ + C C KRFT L+ H H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 30.8 bits (70), Expect = 0.014
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 297 FPCPLVTCGKSFLRSEHLQEHMLQH 321
F C CGK F RS+ LQ H H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 26.5 bits (59), Expect = 0.49
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRH 286
+ F CT+ C F+ L+RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH 23
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 38.5 bits (90), Expect = 2e-05
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
P+ C ++GC KS+ + +LK+H R H
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 33.1 bits (76), Expect = 0.002
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K + C + C K ++ L NLK H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 31.2 bits (71), Expect = 0.009
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 295 RMFPCPLVTCGKSFLRSEHLQEHMLQH 321
+ C C KS+ R E+L+ H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 26.5 bits (59), Expect = 0.45
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRH 286
K KCT++GC+ +S LK H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH 23
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 181
Score = 41.7 bits (98), Expect = 3e-05
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 1 RFAVKKLLEFAQDTDDVSARNVLTKLAVLYSTWSLEKHLATFYED 45
VK + D + + VL L +LYS + + + F E
Sbjct: 59 YVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLEG 103
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 38.1 bits (89), Expect = 3e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY C + C + F A L H R+H
Sbjct: 2 PYACPVESCDRRFSRSADLTRHIRIH 27
Score = 31.9 bits (73), Expect = 0.005
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 295 RMFPCPLVTCGKSFLRSEHLQEHMLQH 321
R + CP+ +C + F RS L H+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 30.8 bits (70), Expect = 0.015
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
+ Y C ++C++RF+ ++L H+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 26.5 bits (59), Expect = 0.40
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRH 286
+ + C + C FS + L RH
Sbjct: 1 RPYACPVESCDRRFSRSADLTRH 23
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 36.9 bits (86), Expect = 8e-05
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY+C + GC K F +LKSH H
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 33.1 bits (76), Expect = 0.002
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
+ Y C CNK+F +NLK H++ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 33.1 bits (76), Expect = 0.002
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 295 RMFPCPLVTCGKSFLRSEHLQEHMLQH 321
R + CP C K F +S +L+ H+L H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 28.5 bits (64), Expect = 0.081
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRHNKS 289
+ + C +DGC F+ + LK H +
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
Score = 23.5 bits (51), Expect = 6.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 177 CEELGCGRKFQTMKQYSTHLKEHS 200
C GC +KF +H+ H+
Sbjct: 5 CPFDGCNKKFAQSTNLKSHILTHA 28
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 36.5 bits (85), Expect = 1e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY CD+ GC K+F L H++ H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 33.1 bits (76), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRHGK 171
+ Y CD C+K F +L H H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 31.9 bits (73), Expect = 0.005
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 297 FPCPLVTCGKSFLRSEHLQEHMLQHNE 323
+ C C K+F+R+ L H H E
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 28.1 bits (63), Expect = 0.14
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRH 286
+ + C + GC F L RH
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRH 24
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.6 bits (85), Expect = 1e-04
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 297 FPCPLVTCGKSFLRSEHLQEHMLQHNENKPKFTCPY 332
F CP CGKSF +HL+EHM H++ + + C +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36
Score = 34.7 bits (80), Expect = 7e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 206 YMCDYKGCGKSFYLMASLKSHQRVH 230
+ C CGKSF LK H ++H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 30.5 bits (69), Expect = 0.021
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 145 YPCDQKNCNKRFTTLSNLKMHMVRH 169
+ C + C K F +LK HM H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 26.2 bits (58), Expect = 0.67
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 265 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC 299
+F C C F+ K LK H K H + R + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYIC 34
Score = 26.2 bits (58), Expect = 0.74
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 177 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDY 210
C E CG+ F K H+K HS+ Y+C++
Sbjct: 4 CPEPACGKSFNFKKHLKEHMKLHSDTR-DYICEF 36
Score = 25.5 bits (56), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 239 CKGCGKQFKVPCRLREHYKAVHESTKNFKCTY 270
CGK F L+EH K +H T+++ C +
Sbjct: 6 EPACGKSFNFKKHLKEHMK-LHSDTRDYICEF 36
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 198
Score = 39.5 bits (92), Expect = 2e-04
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 1 RFAVKKLLEF-AQDTDDVSARNVLTKLAVLYSTWSLEKHLATFYEDEE------DAITEA 53
V K + QD + L L +Y+ + L KHL F +
Sbjct: 68 LIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQ 127
Query: 54 LQSL 57
L+SL
Sbjct: 128 LRSL 131
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 35.8 bits (83), Expect = 2e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
P+ C ++GCGK F L +L++H R+H
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 30.8 bits (70), Expect = 0.012
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K + C + C KRF+ NL+ H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 29.3 bits (66), Expect = 0.052
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 295 RMFPCPLVTCGKSFLRSEHLQEHMLQH 321
+ F C CGK F +L+ H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 25.0 bits (55), Expect = 1.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRH 286
K F+CT++GC FS L+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH 23
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 34.3 bits (78), Expect = 0.001
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 257
Y C CGKSF + H +H+ C CGK+FK+ L H K
Sbjct: 3 LYPCQ---CGKSFTHKSQRDRHMSMHLGLRPY-GCGVCGKKFKMKHHLVGHMK 51
Score = 33.9 bits (77), Expect = 0.002
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 199
K YPC C K FT S HM H C CG+KF+ H+K H
Sbjct: 2 KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 32.3 bits (73), Expect = 0.007
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 321
K + C C F+ KS RH +++ + P CGK F HL HM H
Sbjct: 2 KLYPCQ---CGKSFTHKSQRDRH---MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 27.7 bits (61), Expect = 0.35
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 304 CGKSFLRSEHLQEHMLQHNENKPKFTCPYQDCLMSYVAKSSLYAHLK 350
CGKSF HM H C + K L H+K
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGL---RPYGCGVCGKKFKMKHHLVGHMK 51
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.4 bits (77), Expect = 0.002
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY C CGK+F + L HQRVH
Sbjct: 7 PYGCVE--CGKAFSRSSILVQHQRVH 30
Score = 29.5 bits (67), Expect = 0.044
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K Y C + C K F+ S L H H
Sbjct: 6 KPYGCVE--CGKAFSRSSILVQHQRVH 30
Score = 26.8 bits (60), Expect = 0.40
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 304 CGKSFLRSEHLQEHMLQH 321
CGK+F RS L +H H
Sbjct: 13 CGKAFSRSSILVQHQRVH 30
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 33.8 bits (77), Expect = 0.002
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 188 TMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 230
++ +Y + + + C + GC K+F +++SH + H
Sbjct: 6 SIDKYVKEMPDK-----TFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 31.8 bits (72), Expect = 0.010
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 126 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 169
+ + +++ + K + C C K F N++ H+ H
Sbjct: 2 LPRGSIDKYVKEMPD--KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 28.4 bits (63), Expect = 0.14
Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 280 KSALKRHNKSKHLNMRMFPCPLVTCGKSFLRSEHLQEHMLQHNENK 325
+ ++ ++ K + + F C C K+F R +++ H+ H E++
Sbjct: 4 RGSIDKY--VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 32.2 bits (74), Expect = 0.004
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
P+ C C ++F L +H R H
Sbjct: 3 PFQCRI--CMRNFSRSDHLTTHIRTH 26
Score = 27.6 bits (62), Expect = 0.17
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K + C C + F+ +L H+ H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTH 26
Score = 26.4 bits (59), Expect = 0.48
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 304 CGKSFLRSEHLQEHMLQH 321
C ++F RS+HL H+ H
Sbjct: 9 CMRNFSRSDHLTTHIRTH 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 32.2 bits (74), Expect = 0.005
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
++C+ C ++F LK H R H
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSH 25
Score = 28.4 bits (64), Expect = 0.11
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
+ + C+ C + F +LK H H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
Score = 27.2 bits (61), Expect = 0.23
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 304 CGKSFLRSEHLQEHMLQH 321
C ++F R EHL+ H H
Sbjct: 8 CTRAFARQEHLKRHYRSH 25
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 32.3 bits (74), Expect = 0.006
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 239 CKGCGKQFKVPCRLREHYKAVHESTKNFKC 268
C+ CGK F P L H K VH S + KC
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 27.7 bits (62), Expect = 0.19
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 205 PYMCDYKGCGKSFYLMASLKSH-QRVH 230
PY+C CGK F L H ++VH
Sbjct: 5 PYICQS--CGKGFSRPDHLNGHIKQVH 29
Score = 27.7 bits (62), Expect = 0.20
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 142 KKCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K Y C C K F+ +L H+ +
Sbjct: 3 GKPYICQS--CGKGFSRPDHLNGHIKQV 28
Score = 26.1 bits (58), Expect = 0.74
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL 301
K + C C FS L H K H + R C +
Sbjct: 4 KPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 25.7 bits (57), Expect = 1.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 304 CGKSFLRSEHLQEHM-LQHNENKPKFTC 330
CGK F R +HL H+ H +P C
Sbjct: 11 CGKGFSRPDHLNGHIKQVHTSERP-HKC 37
Score = 23.4 bits (51), Expect = 6.3
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 106 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCD 148
+P+ C+ C GF L H+ ++ + C
Sbjct: 3 GKPYICQS-------CGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.6 bits (72), Expect = 0.008
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY C + C K+F L H + +
Sbjct: 8 PYACSH--CDKTFRQKQLLDMHFKRY 31
Score = 28.5 bits (64), Expect = 0.098
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K Y C C+K F L MH R+
Sbjct: 7 KPYACSH--CDKTFRQKQLLDMHFKRY 31
Score = 26.9 bits (60), Expect = 0.33
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 304 CGKSFLRSEHLQEHMLQHNE 323
C K+F + + L H ++++
Sbjct: 14 CDKTFRQKQLLDMHFKRYHD 33
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.1 bits (71), Expect = 0.011
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K Y C C+ RFT +KMH+++
Sbjct: 7 KPYECYI--CHARFTQSGTMKMHILQK 31
Score = 26.9 bits (60), Expect = 0.39
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 205 PYMCDYKGCGKSFYLMASLKSH-QRVH 230
PY C C F ++K H + H
Sbjct: 8 PYECYI--CHARFTQSGTMKMHILQKH 32
Score = 26.5 bits (59), Expect = 0.62
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 291 HLNMRMFPCPLVTCGKSFLRSEHLQEHMLQH 321
H + + C C F +S ++ H+LQ
Sbjct: 3 HSGEKPYECY--ICHARFTQSGTMKMHILQK 31
Score = 24.9 bits (55), Expect = 2.2
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 259 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 291
H K ++C C F+ +K H KH
Sbjct: 2 THSGEKPYECYI--CHARFTQSGTMKMHILQKH 32
Score = 23.4 bits (51), Expect = 6.2
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 239 CKGCGKQFKVPCRLREHYKAVH 260
C C +F ++ H H
Sbjct: 11 CYICHARFTQSGTMKMHILQKH 32
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 30.8 bits (69), Expect = 0.013
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY C ++GC K F L + LK H++VH
Sbjct: 3 PYECPHEGCDKRFSLPSRLKRHEKVH 28
Score = 27.7 bits (61), Expect = 0.20
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 266 FKCTYDGCKLLFSTKSALKRHNK 288
++C ++GC FS S LKRH K
Sbjct: 4 YECPHEGCDKRFSLPSRLKRHEK 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.4 bits (69), Expect = 0.018
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
+ C C K F L H + H
Sbjct: 2 KFACPE--CPKRFMRSDHLSKHIKTH 25
Score = 26.9 bits (60), Expect = 0.30
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K + C + C KRF +L H+ H
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTH 25
Score = 25.0 bits (55), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 304 CGKSFLRSEHLQEHMLQHNENK 325
C K F+RS+HL +H+ H K
Sbjct: 8 CPKRFMRSDHLSKHIKTHQNKK 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 30.3 bits (69), Expect = 0.020
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY C CGK+F + L +HQR+H
Sbjct: 2 PYKC--LECGKAFSQNSGLINHQRIH 25
Score = 23.7 bits (52), Expect = 4.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 304 CGKSFLRSEHLQEHMLQH 321
CGK+F ++ L H H
Sbjct: 8 CGKAFSQNSGLINHQRIH 25
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 30.0 bits (67), Expect = 0.032
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRHNKSKH 291
KNF C DGC L F+TK+ +K+H H
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFNRFH 28
Score = 25.0 bits (54), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVR 168
K + CD C+ RFTT +N+K H R
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFNR 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 29.3 bits (66), Expect = 0.062
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVHV 231
P+ C C +SF L H++ H+
Sbjct: 11 PFQCPD--CDRSFSRSDHLALHRKRHM 35
Score = 26.2 bits (58), Expect = 0.62
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K + C C++ F+ +L +H RH
Sbjct: 10 KPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 23.9 bits (52), Expect = 4.5
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 259 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM 294
K F+C FS L H K +H+ +
Sbjct: 5 GSTGIKPFQCPDCDRS--FSRSDHLALHRK-RHMLV 37
Score = 23.2 bits (50), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 304 CGKSFLRSEHLQEHMLQH 321
C +SF RS+HL H +H
Sbjct: 17 CDRSFSRSDHLALHRKRH 34
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 28.6 bits (64), Expect = 0.088
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
P++C C +F A+ H +VH
Sbjct: 7 PFVCRI--CLSAFTTKANCARHLKVH 30
Score = 27.0 bits (60), Expect = 0.32
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 298 PCPLVTCGKSFLRSEHLQEHMLQHNEN 324
P C +F + H+ H +
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 25.1 bits (55), Expect = 1.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 146 PCDQKNCNKRFTTLSNLKMHMVRH 169
P + C FTT +N H+ H
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 28.6 bits (64), Expect = 0.11
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 133 RHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 169
R E + Y CD+ C K F+ S+L H H
Sbjct: 2 RSEWQQRERR-RYKCDE--CGKSFSHSSDLSKHRRTH 35
Score = 26.7 bits (59), Expect = 0.48
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
Y CD CGKSF + L H+R H
Sbjct: 12 RYKCDE--CGKSFSHSSDLSKHRRTH 35
Score = 25.9 bits (57), Expect = 0.81
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 99 HLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 138
+ ++R +KC C F L +H +H
Sbjct: 3 SEWQQRERRRYKCD-------ECGKSFSHSSDLSKHRRTH 35
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 27.9 bits (62), Expect = 0.16
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
PY+C GC K + +SL+ H +
Sbjct: 2 PYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 26.0 bits (57), Expect = 0.83
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K Y C C KR+T S+L+ H+
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 25.6 bits (56), Expect = 1.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 328 FTCPYQDCLMSYVAKSSLYAHLKHVH 353
+ C C Y SSL H+K VH
Sbjct: 3 YVCKLPGCTKRYTDPSSLRKHVKTVH 28
Score = 24.0 bits (52), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 240 KGCGKQFKVPCRLREHYKAVH 260
GC K++ P LR+H K VH
Sbjct: 8 PGCTKRYTDPSSLRKHVKTVH 28
Score = 23.7 bits (51), Expect = 5.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRHNKSKH 291
K + C GC ++ S+L++H K+ H
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 26.8 bits (59), Expect = 0.48
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 140 EDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 169
D K + C C +RFT +L +H +H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 26.4 bits (58), Expect = 0.55
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 295 RMFPCPLVTCGKSFLRSEHLQEHMLQH 321
+ F C CG+ F +HL H +H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 25.2 bits (55), Expect = 1.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
P++C GCG+ F L H+ H
Sbjct: 6 PFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.6 bits (58), Expect = 0.53
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 143 KCYPCDQKNCNKRFTTLSNLKMHMVRH 169
K +PC ++ C K FT+L +L H + H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 25.0 bits (54), Expect = 1.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 295 RMFPCPLVTCGKSFLRSEHLQEHMLQH 321
+ FPC C K F HL H L H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 23.1 bits (49), Expect = 8.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQRVH 230
P+ C +GC K F + L H H
Sbjct: 2 PFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 23.1 bits (49), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 264 KNFKCTYDGCKLLFSTKSALKRH 286
K F C +GC+ F++ L RH
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRH 23
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 25.8 bits (56), Expect = 0.86
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 303 TCGKSFLRSEHLQEHMLQHNENKP 326
CGK F HL H L H+ KP
Sbjct: 10 ICGKIFRDVYHLNRHKLSHSGEKP 33
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 26.5 bits (58), Expect = 0.96
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 296 MFPCPLVTCGKSFLRSEHLQEHMLQH 321
+ PC L CGK F + L++H QH
Sbjct: 6 ILPCGL--CGKVFTDANRLRQHEAQH 29
Score = 25.3 bits (55), Expect = 2.1
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 237 LVCKGCGKQFKVPCRLREHYKAVHEST 263
L C CGK F RLR+H +A H T
Sbjct: 7 LPCGLCGKVFTDANRLRQH-EAQHGVT 32
Score = 25.0 bits (54), Expect = 2.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 145 YPCDQKNCNKRFTTLSNLKMHMVRHG 170
PC C K FT + L+ H +HG
Sbjct: 7 LPCGL--CGKVFTDANRLRQHEAQHG 30
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.4 bits (55), Expect = 1.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 268 CTYDGCKLLFSTKSALKRHNKSKHLNMR 295
C + GC +FS + L H K +H++ +
Sbjct: 3 CDFPGCGRIFSNRQYLNHHKKYQHIHQK 30
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 24.5 bits (53), Expect = 2.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 205 PYMCDYKGCGKSFYLMASLKSHQ-RVH 230
PYMC+++GC K+F + HQ R H
Sbjct: 2 PYMCEHEGCSKAFSNASDRAKHQNRTH 28
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 24.7 bits (53), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 206 YMCDYKGCGKSFYLMASLKSHQRVH 230
Y+C ++ CGK+F LK HQ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH 26
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.2 bits (52), Expect = 3.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 146 PCDQKNCNKRFTTLSNLKMHMVRHG 170
C K C K F S ++ H+ HG
Sbjct: 3 ACPHKGCTKMFRDNSAMRKHLHTHG 27
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.4 bits (50), Expect = 6.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 213 CGKSFYLMASLKSHQRVH 230
CGK+F + LK HQ VH
Sbjct: 8 CGKAFVESSKLKRHQLVH 25
Score = 23.0 bits (49), Expect = 8.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 304 CGKSFLRSEHLQEHMLQH 321
CGK+F+ S L+ H L H
Sbjct: 8 CGKAFVESSKLKRHQLVH 25
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 24.3 bits (52), Expect = 6.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 234 PEDLVCKGCGKQFKVPCRLREHYKAVHES 262
P V +GC F + L HY+AVH+S
Sbjct: 20 PYRCVHQGCFAAFTIQQNLILHYQAVHKS 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.133 0.423
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,312,828
Number of extensions: 61281
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 170
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)