BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17730
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + +S R+F L + + S ++KD+QE K+ +D
Sbjct: 284 MPQKKNPD---SLELIRSKS---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVD 337
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 338 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 373
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + +S R+F L + + S ++KD+QE K+ +D
Sbjct: 268 MPQKKNPD---SLELIRSKS---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVD 321
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 322 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 357
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 1 MPQKKNPDIPRTLSE--AKPESCLRQRLFNMLTHPMEISASSVHDKDMQECKQPRATAID 58
MPQKKNPD + + + L + + P+ ++KDMQE K+ A+D
Sbjct: 280 MPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPL------AYNKDMQEDKEGLFDALD 333
Query: 59 NRLHVMSRPSITI--IYVQKQLC 79
L + ++ + I V++ C
Sbjct: 334 TWLDCLHMAALVLDGIQVKRPRC 356
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + ++ R+F L + + S ++KD+QE K+ +D
Sbjct: 284 MPQKKNPD---SLELIRSKA---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVD 337
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 338 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 373
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + ++ R+F L + + S ++KD+QE K+ +D
Sbjct: 286 MPQKKNPD---SLELIRSKA---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVD 339
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 340 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 375
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + ++ R+F L + + S ++KD+QE K+ +D
Sbjct: 286 MPQKKNPD---SLELIRSKA---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVD 339
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 340 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 375
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + ++ R+F L + + S ++KD+QE K+ +D
Sbjct: 286 MPQKKNPD---SLELIRSKA---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVD 339
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 340 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 375
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + ++ R+F L + + S ++KD+QE K+ +D
Sbjct: 286 MPQKKNPD---SLELIRSKA---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVD 339
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 340 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 375
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + ++ R+F L + + S ++KD+QE K+ +D
Sbjct: 286 MPQKKNPD---SLELIRSKA---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVD 339
Query: 59 NRLHVMSRPSITIIYVQKQLCNSVRGLACTSCAAEL 94
V+ + I +Q N + L A +L
Sbjct: 340 TLTAVLQVATGVISTLQISKENMEKALTPEMLATDL 375
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEISA-----SSVHDKDMQECKQPRAT 55
MPQKKNPDI +R + +L + +SA ++KD+QE K+P
Sbjct: 283 MPQKKNPDILEL---------IRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQEDKEPLLD 333
Query: 56 AI 57
A+
Sbjct: 334 AL 335
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD +L + ++ R+F L + + S ++KD+QE K+ +D
Sbjct: 283 MPQKKNPD---SLELIRSKA---GRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVD 336
Query: 59 NRLHVMSRPSITIIYVQ 75
V+ + I +Q
Sbjct: 337 TLTAVLQVATGVISTLQ 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,703,456
Number of Sequences: 62578
Number of extensions: 76874
Number of successful extensions: 156
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 11
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)