RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17730
(101 letters)
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 37.7 bits (88), Expect = 3e-04
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD+ L K R+ LT + + +++D+QE K+P A+
Sbjct: 278 MPQKKNPDVAE-LIRGKT-----GRVQGNLTGMLMTLKALPLAYNRDLQEDKEPLFDALK 331
Query: 59 NRLHVM 64
+
Sbjct: 332 TVELSL 337
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 33.2 bits (77), Expect = 0.011
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 1 MPQKKNPDIP 10
MPQKKNPD+
Sbjct: 282 MPQKKNPDVA 291
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 31.7 bits (73), Expect = 0.034
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 1 MPQKKNPDIP---RTLSEAKPESCLRQRLFNMLTHPMEI-----SASSVHDKDMQECKQP 52
MPQKKNPD+ R + R+ L + A + KD+QE K+P
Sbjct: 258 MPQKKNPDVLELIRGKAG---------RVIGALAGLLTTLKGLPLAYN---KDLQEDKEP 305
Query: 53 RATAID 58
A+D
Sbjct: 306 LFDAVD 311
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 30.8 bits (70), Expect = 0.084
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD P L K R+ L + + + +++D+QE K+P ++D
Sbjct: 294 MPQKKNPD-PMELVRGKS-----ARVIGDLVTVLALCKGLPTAYNRDLQEDKEPLFDSVD 347
Query: 59 N 59
Sbjct: 348 T 348
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 29.9 bits (68), Expect = 0.15
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 1 MPQKKNPDIP 10
MPQKKNPD+
Sbjct: 281 MPQKKNPDVL 290
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 29.8 bits (68), Expect = 0.16
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 1 MPQKKNPDIP 10
MPQK NP I
Sbjct: 253 MPQKVNPVIL 262
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 28.4 bits (64), Expect = 0.55
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 1 MPQKKNPD 8
MPQKKNPD
Sbjct: 280 MPQKKNPD 287
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 28.3 bits (64), Expect = 0.57
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 6/40 (15%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEISASS 40
MPQK NP + L + L +
Sbjct: 168 MPQKVNPVAAELVRG------LAGLVIGNLVAVLTALKGG 201
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 28.2 bits (63), Expect = 0.72
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 1 MPQKKNPDIPRTLSEAKPESCLRQRLFNMLTHPMEI--SASSVHDKDMQECKQPRATAID 58
MPQKKNPD L + ++ R++ L M + ++KDMQE K+ A+D
Sbjct: 280 MPQKKNPD---ALELIRGKT---GRVYGALAGMMMTVKALPLAYNKDMQEDKEGLFDALD 333
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 26.2 bits (58), Expect = 3.5
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 1 MPQKKNPDIP 10
MP K NPD
Sbjct: 291 MPGKVNPDQL 300
>gnl|CDD|235849 PRK06666, fliM, flagellar motor switch protein FliM; Validated.
Length = 337
Score = 25.6 bits (57), Expect = 5.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 22 LRQRLFNMLTHPMEISASSV 41
LR L N+L +EIS SV
Sbjct: 67 LRIGLSNLLRRSVEISVGSV 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.130 0.397
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,728,860
Number of extensions: 349458
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 15
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)